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At least 577 records · Page 32Linked to original sources

A simple analytical procedure to replace HPLC for monitoring treatment concentrations of chloramine-T on fish culture facilities

Concentrations of chloramine-T must be monitored during experimental treatments of fish when studying the effectiveness of the drug for controlling bacterial gill disease. A surrogate analytical method for analysis of chloramine-T to replace the existing high-performance liquid chromatography (HPLC) method is described. A surrogate method was needed because the existing HPLC method is expensive, requires a specialist to use, and is not generally available at fish hatcheries. Criteria for selection of a replacement method included ease of use, analysis time, cost, safety, sensitivity, accuracy, and precision. The most promising approach was to use the determination of chlorine concentrations as an indicator of chloramine-T. Of the currently available methods for analysis of chlorine, the DPD ( N , N -diethyl- p -phenylenediamine) colorimetric method best fit the established criteria. The surrogate method was evaluated under a variety of water quality conditions. Regression analysis of all DPD colorimetric analyses with the HPLC values produced a linear model ( Y =0.9602 X +0.1259) with an r 2 value of 0.9960. The average accuracy (percent recovery) of the DPD method relative to the HPLC method for the combined set of water quality data was 101.5%. The surrogate method was also evaluated with chloramine-T solutions that contained various concentrations of fish feed or selected densities of rainbow trout. When samples were analyzed within 2 h, the results of the surrogate method were consistent with those of the HPLC method. When samples with high concentrations of organic material were allowed to age more than 2 h before being analyzed, the DPD method seemed to be susceptible to interference, possibly from the development of other chloramine compounds. However, even after aging samples 6 h, the accuracy of the surrogate DPD method relative to the HPLC method was within the range of 80–120%. Based on the data comparing the two methods, the U.S. Food and Drug Administration has concluded that the DPD colorimetric method is appropriate to use to measure chloramine-T in water during pivotal efficacy trials designed to support the approval of chloramine-T for use in fish culture.

Aquaculture↗

Utilization of stochastic ground motion simulations for scenario-based performance assessment of geo-structures

Probabilistic seismic performance assessments of engineered structures can be highly sensitive to the seismic input excitation and its variability. In the present study, the scenario-based performance assessment recommended by Federal Emergency Management Agency (FEMA) P-58 guidelines is adopted to estimate seismic fragility of concrete dams for various seismic hazard scenarios. Due to the scarcity of recorded ground motions and thereby their poor representation of uncertainties, stochastic ground motion simulation methods are utilized to obtain the required input excitations. Moreover, to understand the uncertainty in ground motion simulation models, two broadband stochastic simulation models are used to generate input excitations representing six seismic hazard scenarios defined by earthquake magnitude, source-to-site distance, and soil conditions. Optimal intensity measure parameters for each scenario are identified using a systematic procedure that considers criteria such as efficiency, practicality, proficiency, sufficiency, and hazard compatibility. Fragility curves and surfaces are derived using the cloud analysis technique, taking into account various damage measures and limit state functions. The study finds that the derived fragility curves are particularly sensitive to the selection of earthquake scenarios, the choice of records, and the methods used to calculate fragility curves, with less sensitivity observed to different engineering demand parameters. Given this sensitivity, particularly to ground motion selection, the study highlights the necessity of incorporating both model-to-model variability (epistemic uncertainty) and record-to-record variability (aleatory uncertainty), alongside the established material and modeling uncertainties, in the probabilistic seismic assessment.

Reliability Engineering and System Safety (RESS)↗

Sediment oxygen demand in the lower Willamette River, Oregon, 1994

An investigation of sediment oxygen demand (SOD) at the interface of the stream and stream bed was performed in the lower Willamette River (river mile 51 to river mile 3) during August, 1994, as part of a cooperative project with the Oregon Department of Environmental Quality. The primary goals of the investigation were to measure the spatial variability of SOD in the lower Willamette River and to relate SOD to bottom-sediment characteristics. The SOD chambers used in the study were open-bottomed, opaque plastic cylinders that were seated and sealed on the river bottom by scuba divers. When seated, the chambers contained 52 liters of isolated river water, which was slowly recirculated for at least 2 hours over 0.225 square meters of relatively undisturbed bottom sediment. These chambers could not be deployed in areas with gravels and cobbles, which represent about 55 percent of the study area above Willamette Falls and 30 percent of the river below Willamette Falls. Sediment oxygen demand is commonly reported as grams of oxygen consumed per square meter of bottom sediment per day (g/m2 p day). The measured SOD rates, corrected to a temperature of 20 degrees C, ranged from 1.3 to 4.1 g/m2' day in the lower Willamette River. The SOD measured above and below Willamette Falls averaged 2.0 and 2.1 g/m2 ' day, respectively. After adjusting for the amount of bottom material composed of gravels and cobbles, the best estimates for reachwide SOD rates above and below Willamette Falls are 1.4 (+ 0.5) and 1.8 (+ 0.3) g/m2' day, respectively. Sediment samples were collected near each chamber and analyzed for percent water, percent sand, and percent organics. The sand content ranged from 0.1 to 6.2 percent and averaged 1.8 percent. The organic content ranged from 1.4 to 9.6 and averaged 5.6 percent. No statistically significant correlations were found between these sediment characteristics and sediment oxygen demand.

Oregon↗

A Bayesian nonparametric approach to unmixing detrital geochronologic data

Sedimentary deposits constitute the primary record of changing environmental conditions that have acted on Earth’s surface over geologic time. Clastic material is eroded from source locations (parents) in sediment routing systems and deposited at sink locations (children). Both parents and children have characteristics that vary across many different dimensions, including grain size, chemical composition, and the geochronologic age of constituent detrital minerals. During transport, sediment from different parents is mixed together to form a child, which in turn may serve as the parent for other sediment farther down-system or later in time when buried sediment is exhumed. The distribution of detrital mineral ages observed in parent and child sediments allows for investigation of the proportion of each parent in the child sediment, which reflects the properties of the sediment routing system. To model the proportion of dates in a child sample that comes from each of the parent distributions, we use a Bayesian mixture of Dirichlet processes. This model enables us to estimate the mixing proportions with associated uncertainty while making minimal assumptions. We also present an extension to the model whereby we reconstruct unobserved parent distributions from multiple observed child distributions using mixtures of Dirichlet processes. The model accounts for uncertainty in both the number of mineral formation events that constitute each parent distribution and the mixing proportions of each parent distribution that constitutes a child distribution. To demonstrate the model, we perform analyses using simulated data where the true age distribution is known as well as using a real-world case study from the coast of central California, USA.

Mathematical Geosciences↗

Nearshore bathymetric mapping along a 7-mile reach of Lake Sharpe shoreline near Lower Brule, South Dakota, 2013

Shoreline erosion rates along Lake Sharpe, a Missouri River reservoir, near the community of Lower Brule, South Dakota, were studied previously during 2011–12 by the U.S. Geological Survey, the Lower Brule Sioux Tribe, and Oglala Lakota College. The rapid shoreline retreat has caused many detrimental effects along the shoreline of Lake Sharpe, including losses of cultural sites, recreation access points, wildlife habitat, irrigated cropland, and landmass. The Lower Brule Sioux Tribe is considering options to reduce or stop erosion. One such option for consideration is the placement of discontinuous rock breakwater structures in shallow water to reduce wave action at shore. Information on the depth of water and stability characteristics of bottom material in nearshore areas of Lake Sharpe is needed by the Lower Brule Sioux Tribe to develop structural mitigation alternatives. To help address this need, a bathymetric survey of nearshore areas of Lake Sharpe near Lower Brule, South Dakota, was completed in 2013 by the U.S. Geological Survey in cooperation with the Lower Brule Sioux Tribe. HYPACK® hydrographic survey software was used to plan data collection transects for a 7-mile reach of Lake Sharpe shoreline near Lower Brule, South Dakota. Regular data collection transects and oblique transects were planned to allow for quality-assurance/quality-control comparisons. Two methods of data collection were used in the bathymetric survey: (1) measurement from a boat using bathymetric instrumentation where water was more than 2 feet deep, and (2) wading using Real-Time Kinematic Global Navigation Satellite System equipment on shore and where water was shallower than 2 feet deep. A dual frequency, 24- or 200-kilohertz narrow beam, depth transducer was used in conjunction with a Teledyne Odom CV100 dual frequency echosounder for boat-based data collection. In water too shallow for boat navigation, the elevation and nature of the reservoir bottom were mapped using Real-Time Kinematic Global Navigation Satellite System equipment. Once the data collection effort was completed, data editing was performed in HYPACK® to remove erroneous data points and to apply water-surface elevations. Maps were developed separately for water depth and bottom elevation for the study area. Lines of equal water depth for 2, 3, 3.5, 4, and 5 feet from the water surface to the lake bottom were mapped in nearshore areas of Lake Sharpe. Overall, water depths stay shallow for quite a distance from shore. In the 288 transects that crossed a 2 foot depth line, this depth occurred an average of 88 feet from shore. Similarly, in the 317 transects that crossed a 3 foot depth line, this did not occur until an average of 343 feet from shore. Elevation contours of the lake bottom were mapped primarily for elevations ranging from 1,419 to 1,416 feet above North American Vertical Datum of 1988. Horizontal errors of the Real-Time Kinematic Global Navigation Satellite System equipment for the study area are essentially inconsequential because water depth and bottom elevation were determined to change relatively slowly. The estimated vertical error associated with the Real-Time Kinematic Global Navigation Satellite System equipment for the study area ranges from 0.6 to 0.9 inch. This vertical error is small relative to the accuracy of the bathymetric data. Accuracy assessments of the data collected for this study were computed according to the National Standard for Spatial Data Accuracy. The maps showing the lines of equal water depth and elevation contours of the lake bottom are able to support a 1-foot contour interval at National Standards for Spatial Data Accuracy vertical accuracy standards, which require a vertical root mean squared error of 0.30 foot or better and a fundamental vertical accuracy calculated at the 95-percent confidence level of 0.60 foot or better.

South Dakota↗

Volcano crisis response at Yellowstone volcanic complex - after-action report for exercise held at Salt Lake City, Utah, November 15, 2011

A functional tabletop exercise was run on November 14-15, 2011 in Salt Lake City, Utah, to test crisis response capabilities, communication protocols, and decision-making by the staff of the multi-agency Yellowstone Volcano Observatory (YVO) as they reacted to a hypothetical exercise scenario of accelerating volcanic unrest at the Yellowstone caldera. The exercise simulated a rapid build-up of seismic activity, ground deformation, and hot-spring water-chemistry and temperature anomalies that culminated in a small- to moderate-size phreatomagmatic eruption within Yellowstone National Park. The YVO scientific team's responses to the unfolding events in the scenario and to simulated requests for information by stakeholders and the media were assessed by (a) the exercise organizers; (b) several non-YVO scientists, who observed and queried participants, and took notes throughout the exercise; and (c) the participants themselves, who kept logs of their actions during the exercise and later participated in a group debriefing session and filled out detailed questionnaires. These evaluations were tabulated, interpreted, and summarized for this report, and on the basis of this information, recommendations have been made. Overall, the YVO teams performed their jobs very well. The exercise revealed that YVO scientists were able to successfully provide critical hazards information, issue information statements, and appropriately raise alert levels during a fast-moving crisis. Based on the exercise, it is recommended that several measures be taken to increase YVO effectiveness during a crisis: 1. Improve role clarification within and between YVO science teams. 2. Improve communications tools and protocols for data-sharing and consensus-building among YVO scientists, who are geographically and administratively dispersed among various institutions across the United States. 3. Familiarize YVO staff with Incident Command System (ICS) procedures and protocols, and provide more in-depth training to appropriate staff members, as needed. 4. Train all science team members in the use of all analytical and computational tools available to them, in order to maximize effectiveness of teams in tracking and interpreting possible accelerating unrest at Yellowstone. Desirable pre-crisis preparations include: (a) updating a catalog of existing map and information products (and identifying additional products) that would be helpful during a crisis; (b) creating "to do" lists of early-crisis tasks for each scientific team; (c) coordinating radio frequencies among partner agencies; and (d) brief training on and promotion of the internal YVO Web log as a repository for scientific observations, data, photographs, and other material to be shared among YVO scientific teams during a crisis. This exercise was designed as an opportunity to practice response to a fast-developing volcano crisis and to test for organizational and procedural weaknesses that could emerge during a real crisis. This report is based upon the observations of the exercise organizers during the one-day exercise and upon written evaluations by the participants. It does not attempt to evaluate any other aspect of YVO or the scientific expertise of any of the highly competent YVO staff. Participants unanimously found the exercise to be helpful for improving their response capabilities, and it is our hope that the report will be a starting point for internal discussions that will make YVO even better-prepared for some future volcano crisis.

Utah↗

The nature of porosity in organic-rich mudstones of the Upper Jurassic Kimmeridge Clay Formation, North Sea, offshore United Kingdom

Analyses of organic-rich mudstones from wells that penetrated the Upper Jurassic Kimmeridge Clay Formation, offshore United Kingdom, were performed to evaluate the nature of both organic and inorganic rock constituents and their relation to porosity in this world-class source rock. The formation is at varying levels of thermal maturity, ranging from immature in the shallowest core samples to mature in the deepest core samples. The intent of this study was to evaluate porosity as a function of both organic macerals and thermal maturity. At least four distinct types of organic macerals were observed in petrographic and SEM analyses and they all were present across the study area. The macerals include, in decreasing abundance: 1) bituminite admixed with clays; 2) elongate lamellar masses (alginite or bituminite) with small quartz, feldspar, and clay entrained within it; 3) terrestrial (vitrinite, fusinite, semifusinite) grains; and 4) Tasmanites microfossils. Although pores in all maceral types were observed on ion-milled surfaces of all samples, the pores (largely nanopores with some micropores) vary as a function of maceral type. Importantly, pores in the macerals do not vary systematically as a function of thermal maturity, insofar as organic pores are of similar size and shape in both the immature and mature Kimmeridge rocks. If any organic pores developed during the generation of hydrocarbons, they were apparently not preserved, possibly because of the highly ductile nature of much of the rock constituents of Kimmeridge mudstones (clays and organic material). Inorganic pores (largely micropores with some nanopores) have been observed in all Kimmeridge mudstones. These pores, particularly interparticle (i.e., between clay platelets), and intraparticle (i.e., in framboidal pyrite, in partially dissolved detrital K-feldspar, and in both detrital and authigenic dolomite) are noteworthy because they compose much of the observable porosity in the shales in both immature and mature samples. The absence of a systematic increase in organic porosity as a function of either maceral type or thermal maturity indicates that such porosity was probably unrelated to hydrocarbon generation. Instead, much of the porosity within mudstones of the Kimmeridge appears to be largely intraparticle and interparticle (adjacent to inorganic constituents), so the petroleum storage potential in these organic-rich mudstones largely resides in inorganic pores.

International Journal of Coal Geology↗

Design and Performance of an Enhanced Bioremediation Pilot Test in a Tidal Wetland Seep, West Branch Canal Creek, Aberdeen Proving Ground, Maryland

Because of a lack of available in situ remediation methods for sensitive wetland environments where contaminated groundwater discharges, the U.S. Geological Survey, in cooperation with the U.S. Army Garrison, Aberdeen Proving Ground, Maryland, conceived, designed, and pilot tested a permeable reactive mat that can be placed horizontally at the groundwater/surface-water interface. Development of the reactive mat was part of an enhanced bioremediation study in a tidal wetland area along West Branch Canal Creek at Aberdeen Proving Ground, where localized areas of preferential discharge (seeps) transport groundwater contaminated with carbon tetrachloride, chloroform, tetrachloroethene, trichloroethene, and 1,1,2,2-tetrachloroethane from the Canal Creek aquifer to land surface. The reactive mat consisted of a mixture of commercially available organic- and nutrient-rich peat and compost that was bioaugmented with a dechlorinating microbial consortium, WBC-2, developed for this study. Due to elevated chlorinated methane concentrations in the pilot test site, a layer of zero-valent iron mixed with the peat and compost was added at the base of the reactive mat to promote simultaneous abiotic and biotic degradation. The reactive mat for the pilot test area was designed to optimize chlorinated volatile organic compound degradation efficiency without altering the geotechnical and hydraulic characteristics, or creating undesirable water quality in the surrounding wetland area, which is referred to in this report as achieving geotechnical, hydraulic, and water-quality compatibility. Optimization of degradation efficiency was achieved through the selection of a sustainable organic reactive matrix, electron donor, and bioaugmentation method. Consideration of geotechnical compatibility through design calculations of bearing capacity, settlement, and geotextile selection showed that a 2- to 3-feet tolerable thickness of the mat was possible, with 0.17 feet settlement predicted for unconsolidated sediments between 1.5 and 6 years following installation of the reactive mat. To ensure hydraulic compatibility in the mat design, mat materials that had a hydraulic conductivity greater than the surrounding wetland sediments were selected, and the mixture was optimized to consist of 1.5 parts compost, 1.5 parts peat and 1 part sand as a safeguard against fluidization. Sediment and matrix properties also indicated that a nonwoven geotextile with a cross-plane flow greater than that of the native sediments was suitable as the base of the reactive mat. Another nonwoven geotextile was selected for installation between the iron mix and organic zones of the mat to create more laminar flow conditions within the mat. Total metals and sequential extraction procedure analyses of mat materials, which were conducted to evaluate water-quality compatibility of the mat materials, showed that concentrations of metals in the compost ranged from one-half to one order of magnitude below consensus-based probable effect concentrations in sediment. A 22-inch-thick reactive mat, containing 0.5 percent WBC-2 by volume, was constructed at seep area 3-4W and monitored from October 2004 through October 2005 for the pilot test. No local, immediate failure of the mat or of wetland sediments was observed during mat installation, indicating that design estimates of bearing capacity and geotextile textile selection ensured the integrity of the mat and wetland sediments during and following installation. Measurements of surface elevation of the mat showed an average settlement of the mat surface of approximately 0.25 feet after 10 months, which was near the predicted settlement for unconsolidated sediment. Monitoring showed rapid establishment and sustainment throughout the year of methanogenic conditions conducive to anaerobic biodegradation and efficient dechlorination activity by WBC-2. The median mass removal of chloromethanes and total chloroethenes and ethane during the

Scientific Investigations Report↗

The modeler's influence on calculated solubilities for performance assessments at the Aspo Hard-rock Laboratory

Four researchers were asked to provide independent modeled estimates of the solubility of a radionuclide solid phase, specifically Pu(OH) 4 , under five specified sets of conditions. The objectives of the study were to assess the variability in the results obtained and to determine the primary causes for this variability. In the exercise, modelers were supplied with the composition, pH and redox properties of the water and with a description of the mineralogy of the surrounding fracture system A standard thermodynamic data base was provided to all modelers. Each modeler was encouraged to use other data bases in addition to the standard data base and to try different approaches to solving the problem. In all, about fifty approaches were used, some of which included a large number of solubility calculations. For each of the five test cases, the calculated solubilities from different approaches covered several orders of magnitude. The variability resulting from the use of different thermodynamic data bases was in most cases, far smaller than that resulting from the use of different approaches to solving the problem.

Materials Research Society Symposium - Proceedings↗

Approaches for assessment of terrestrial vertebrate responses to contaminants: moving beyond individual organisms

Conclusions: A need for a broader range ofinformation on effects of contaminants on individuals exists among the 4 classes of terrestrial vertebrates, especially mammals, reptiles, and amphibians. Separation of contaminant effects from other effects and reduction of speculative extrapolation within and among species requires information that can be produced only by combined field and laboratory investigations that incorporate seasonal or annual cycles and important spatial and interaction conditions. Assessments of contaminant effects at the population level and higher are frequently dependent on extrapolations from a lower organizational level. Actual measurements of the effects of contaminants on populations or communities, possibly in conjunction with case studies that establish relations between effects on individuals and effects on populations, are needed to reduce the uncertainty associated with these extrapolations. Associated with these assessment levels is the need for acceptable definitions of what we mean when we refer to a 'meaningful population change' or an 'effect on communities or ecosystems.' At these higher levels of organization we are also confronted with the need for procedures useful for separating contaminant effects from effects caused by other environmental conditions. Although the bulk of literature surveyed was of the focused cause-and-effect type that is necessary for proving relations between contaminants and wildlife, community or ecosystem field assessments, as sometimes performed with reptiles and amphibians, might be a useful alternative for estimating the potential of a contaminant to cause environmental harm. Assumptions about the special usefulness of reptiles and amphibians as environmental indicators ought to be tested with comparisons to mammals and birds. Information on the effects of contaminants above the individual level is needed to generate accurate estimates of the potential consequences of anthropogenic pollution (e.g., ecological risk assessments). However, realized population, or higher, levels of effects should not be part of regulatory guidelines because the threshold of harm would be too high to be used as a catalyst for action. Measures of realized population or community effects could be used to evaluate the effectiveness of regulatory actions and assess chronic or difficult environmental problems. Some of these information needs can be satisfied with modest effort and expense, but much of the suggested work that incorporates great complexity or long duration is likely to be difficult to accomplish. Cooperation among investigators with different specialties and a willingness by government, academia, and corporate organizations to support the most challenging work will be necessary. Because we are unlikely to have the financial resources to evaluate more than a small number of contaminants for effects at the levels of population, community, or ecosystem, we might need to thoroughly study a few contaminants and then extend the findings to functionally similar contaminants. If sufficient cooperation and organizational support does not materialize, the pursuit of estimation methods will overshadow the collection of actual information on relations between contaminants and wildlife.

Book chapter↗

Discrete element investigation of the influence of shallow soil density on the manifestations of strike-slip surface fault rupture

This study investigates the influence of soil relative density on strike-slip surface fault rupture manifestations using three-dimensional numerical simulations performed with the discrete element method (DEM). The simulations capture the formation of distinctive fault strands within complex flower structures using tens of millions of grains. The tendency for dense soils to localize shear manifests as multiple localized shear bands within wide zones of deformation in strike-slip fault rupture, whereas diffuse shear deformation develops within narrow zones in loose soils. The spatial extents of soil deformation are consistent between simulations having similar relative densities but with different quantities of grains. However, individual shears are more distinguishable in assemblages of finer grains than in assemblages of coarser grains. The simulations show the progressive development of new shears within the bounds of previously developed shears. Shear activity transitions inward as fault activity diminishes along the outermost shears and continues along newly developed shears until a vertically dipping throughgoing shear structure develops that accommodates most of the fault displacement thereon. The throughgoing fault develops at smaller fault displacements in looser soils because the first shear rupture propagates closer to the vertical direction and does not undergo as much inward translation of shear activity, as is observed in denser soils. In all simulations, ground surface uplift develops between nonintersecting active shears, and ground surface subsidence tends to develop where new shears intersect previous shears. The surface traces in these simulations are shown to be consistent with analog models and case histories of surface fault rupture occurring in different shallow subsurface materials. Although computationally costly, these modeling results are valuable for providing a strong numerical supplement to traditional analog models used to represent the mechanics of strike-slip zones in soil, and they provide quantifiable stresses and large-strain deformations throughout the model domain.

Journal of Geotechnical and Geoenvironmental Engin↗

Spatial decision‐support tools to guide restoration and seed‐sourcing in the Desert Southwest

Altered disturbance regimes and shifting climates have increased the need for large‐scale restoration treatments across the western United States. Seed‐sourcing remains a considerable challenge for revegetation efforts, particularly on public lands where policy favors the use of native, locally sourced plant material to avoid maladaptation. An important area of emphasis for public agencies has been the development of spatial tools to guide selection of genetically appropriate seed. When genetic information is not available, current seed transfer guidelines stipulate use of climate‐based or provisional seed transfer zones, which serve as a proxy for local adaptation by representing climate gradients to which plants are commonly adapted. Despite this guidance, little emphasis has been placed on identifying best practices for deriving provisional seed zones or on incorporating predictions from future climate. We describe a flexible, multivariate procedure for deriving such zones that incorporates a broad range of climatic characteristics while accounting for covariation among climate variables. With this approach, we derive provisional seed zones for four regions in the Desert Southwest (the Mojave Desert, Sonoran Desert, Colorado Plateau, and Southern Great Basin). To facilitate future‐resilient restoration designs, we project each zone into its relative position in the future climate based on near‐term, RCP4.5 and RCP8.5 emissions scenarios. Although provisional seed zones are useful in a variety of contexts, there are also situations in which site‐specific guidance is preferable. To meet this need, we implement Climate Distance Mapper, an interactive decision‐support tool designed to help practitioners match seed sources with restoration sites through an accessible online interface. The application allows users to rank the suitability of seed sources anywhere on the landscape based on multivariate climate distances. Users can perform calculations for either the current or future climates. Additionally, tools are available to guide sample effort in regional‐scale seed collections or to partition the landscape into climate clusters representing suitable planting sites for different seed sources. Our tools and analytic procedures represent a flexible and reproducible framework for advancing native plant development programs in the Desert Southwest and beyond.

Ecosphere↗

Seismicity and seismic structure at Okmok Volcano, Alaska

Okmok volcano is an active volcanic caldera located on the northeastern portion of Umnak Island in the Aleutian arc, with recent eruptions in 1997 and 2008. The Okmok area had ~900 locatable earthquakes between 2003 and June 2008, and an additional ~600 earthquakes from the beginning of the 2008 eruption to mid 2009, providing an adequate dataset for seismic tomography. To image the seismic velocity structure of Okmok, we apply waveform cross-correlation using bispectrum verification and double-difference tomography to a subset of these earthquakes. We also perform P-wave attenuation tomography using a spectral decay technique. We examine the spatio-temporal characteristics of seismicity in the opening sequence of the 2008 eruption to investigate the path of magma migration during the establishment of a new eruptive vent. We also incorporate the new earthquake relocations and three-dimensional (3D) velocity model with first-motion polarities to compute focal mechanisms for selected events in the 2008 pre-eruptive and eruptive periods. Through these techniques we obtain precise relocations, a well-constrained 3D P-wave velocity model, and a marginally resolved S-wave velocity model. We image a main low Vp and Vs anomaly directly under the caldera consisting of a shallow zone at 0–2 km depth connected to a larger deeper zone that extends to about 6 km depth. We find that areas of low Qp are concentrated in the central to southwestern portion of the caldera and correspond fairly well with areas of low Vp. We interpret the deeper part of the low velocity anomaly (4–6 km depth) beneath the caldera as a magma body. This is consistent with results from ambient noise tomography and suggests that previous estimates of depth to Okmok's magma chamber based only on geodetic data may be too shallow. The distribution of events preceding the 2008 eruption suggest that a combination of overpressure in the zone surrounding the magma chamber and the introduction of new material from below were jointly responsible for the explosive eruption. Magma escaping from the top of the main magma chamber likely reacted with both a smaller shallow pod of magma and groundwater on its way up below the Cone D area. The earthquakes in the 2008 pre-eruptive and eruptive periods are found to have a mixture of strike-slip, oblique normal, and oblique thrust mechanisms, with a dominant P-axis orientation that is nearly perpendicular to the regional tectonic stress. This may indicate that the stresses related to magmatic activity locally dominated regional tectonic forces during this time period.

Alaska↗

Petrography and geochemistry of selected lignite beds in the Gibbons Creek mine (Manning Formation, Jackson Group, Paleocene) of east-central Texas

This study examined the petrographic and geochemical characteristics of two lignite beds (3500 and 4500 beds, Manning Formation, Jackson Group, Eocene) that are mined at the Gibbons Creek mine in east-central Texas. The purpose of the study was to identify the relations among sample ash yield, coal petrography, and trace-element concentrations in lignite and adjoining rock layers of the Gibbons Creek mine. Particular interest was given to the distribution of 12 environmentally sensitive trace elements (As, Be, Cd, Cr, Co, Hg, Mn, Ni, Pb, Sb, Se, and U) that have been identified as potentially hazardous air pollutants (HAPs) in the United States Clean Air Act Amendments of 1990. Eleven lignite, floor, and rock parting samples were collected from incremental channel samples of the 3500 and 4500 beds that were exposed in a highwall of pit A3 at the Gibbons Creek mine. Short proximate and ultimate and forms of sulfur analyses were performed on all lignite samples, and lignite and rock samples were analyzed for 60 major, minor and trace elements. Representative splits of all lignite samples were ground and cast into pellets, and polished for petrographic analyses in blue-light fluorescence and reflected white light to determine liptinite, inertinite, and huminite maceral group percentages. The following observations summarize our results and conclusions about the geochemistry, petrography, and sedimentology of the 3500 and 4500 beds of the Gibbons Creek lignite deposit: (1) Weighted average dry (db) ash yield for the two beds is 29.7%, average total sulfur content is 2.6%, and average calorific value is 7832 Btu (18.22 MJ/kg). Ash yields are greatest in the lower bench (59.33% db) of the 3500 bed and in the upper bench of the 4500 bed (74.61% db). (2) For lignite samples (on a whole-coal basis), the distributions of two of the HAPs (Pb and Sb) are positively related to ash yield, probably indicating an inorganic affinity for these elements. By using cluster analysis we found that Be and Cd were poorly associated with ash yield, indicating a possible organic affinity, and that Ni, Se, Hg, U, and Pb cluster with most of the rare-earth elements. (3) The dominance of the crypto-eugelinite maceral subgroup over the crypto-humotelinite subgroup suggests that all Gibbons Creek lignites were subjected to peat-forming conditions (either biogenic or chemical) conducive to the degradation of wood cellular material into matrix gels, or that original plant material was not very woody and was prone to formation of matrix gels. The latter idea is supported by pollen studies of Gibbons Creek lignite beds; results indicate that the peat was derived in part from marsh plants low in wood tissue. (4) The occurrence of siliceous sponge spicules in the lower benches of the 3500 bed suggests the original peat in this part of the bed was deposited in standing, fresh water. (5) The petrographic data indicate that the upper sample interval of the 3500 bed contains more inertinite (3%) than the other samples studied. Increases in inertinite content in the upper part of the 3500 bed may have been associated with alteration of the peat by acids derived from the volcanic ash or could have been caused by fire, oxidation and drying, or biologic alteration of the peat in the paleo-mire.

International Journal of Coal Geology↗

Normalization of stable isotope data for carbonate minerals: implementation of IUPAC guideline

Carbonate minerals provide a rich source of geochemical information because their δ 13 C and δ 18 O values provide information about surface and subsurface Earth processes. However, a significant problem is that the same δ 18 O value is not reported for the identical carbonate sample when analyzed in different isotope laboratories in spite of the fact that the International Union of Pure and Applied Chemistry (IUPAC) has provided reporting guidelines for two decades. This issue arises because (1) the δ 18 O measurements are performed on CO 2 evolved by reaction of carbonates with phosphoric acid, (2) the acid-liberated CO 2 is isotopically fractionated (enriched in 18 O) because it contains only two-thirds of the oxygen from the solid carbonate, (3) this oxygen isotopic fractionation factor is a function of mineralogy, temperature, concentration of the phosphoric acid, and δ 18 O value of water in the phosphoric acid, (4) researchers may use any one of an assortment of oxygen isotopic fractionation factors that have been published for various minerals at various reaction temperatures, and (5) it sometimes is not clear how one should calculate δ 18 O VPDB values on a scale normalized such that the δ 18 O value of SLAP reference water is −55.5 ‰ relative to VSMOW reference water. To enable researchers worldwide to publish the same δ 18 O value (within experimental uncertainty) for the same carbonate sample, we have re-evaluated reported acid fractionation factors for calcite at 25, 50, and 75 °C and propose a revised relation for the temperature dependence of oxygen isotopic acid fractionation factor, α CO 2 ( ACID ) -calcite αCO2(ACID)-calcite , of 1000ln α CO 2 ( ACID ) -calcite=3.48(10 3 /T)-1.47 1000lnαCO2(ACID)-calcite=3.48(103/T)-1.47 Turn MathJax on where T is temperature in kelvin. At 25 °C, α CO 2 ( ACID ) -calcite=1.01025 αCO2(ACID)-calcite=1.01025 , the most commonly accepted value for this quantity. We propose a normalization protocol in which (1) the internationally distributed carbonate isotopic reference materials NBS 18 and NBS 19 are interspersed among carbonate samples analyzed by treatment with phosphoric acid, (2) the δ 18 O values of the calcite reference materials and the carbonate samples are calculated, respectively, by using the α CO 2 ( ACID ) -calcite αCO2(ACID)-calcite relation above and oxygen-isotope acid fractionation factors appropriate for the sample mineralogy and reaction temperature, (3) the δ 18 O values of solid carbonate samples are determined on the VPDB scale ( δ 18 O VPDB ) with IUPAC-recommended scale expansion such that the δ 18 O of SLAP reference water is −55.5 ‰ relative to VSMOW reference water by normalizing δ 18 O values of carbonate samples with 2014-IUPAC-recommended δ 18 O values of NBS 18 and NBS 19, and (4) δ 18 O values on the VPDB scale are converted to δ 18 O values on the VSMOW-SLAP scale by using IUPAC recommendations. To ease calculations in the protocol, a software application titled “Carbon and Oxygen Isotopic Normalization Tool for Carbonates” is available that relies upon IUPAC-recommended δ 13 C and δ 18 O values of carbonate isotopic reference materials ( http://isotopes.usgs.gov/research/topics/carbonatesnormalizationtool.html ).

Geochimica et Cosmochimica Acta↗

The performance of nearshore dredge disposal at Ocean Beach, San Francisco, California, 2005-2007

Ocean Beach, California, contains an erosion hot spot in the shadow of the San Francisco ebb tidal delta that threatens valuable public infrastructure as well as the safe recreational use of the beach. In an effort to reduce the erosion at this location a new plan for the management of sediment dredged annually from the main shipping channel at the mouth of San Francisco Bay was implemented in May 2005 by the United States Army Corps of Engineers, San Francisco District (USACE). The USACE designated a temporary nearshore dredge disposal site for the annual disposal of about 230,000 m3 (300,000 yd3) of sand about 750 m offshore and slightly south of the erosion hot spot, in depths between approximately 9 and 14 m. The site has now been used three times for a total sediment disposal of about 690,000 m3 (about 900,000 yds3). The disposal site was chosen because it is in a location where strong tidal currents and open-ocean waves can potentially feed sediment toward the littoral zone in the reach of the beach that is experiencing critical erosion, as well as prevent further scour on an exposed outfall pipe. The onshore migration of sediment from the target disposal location might feed the primary longshore bar or the nearshore zone, and provide a buffer to erosion that peaks during winter months when large waves impact the region. The United States Geological Survey (USGS) has been monitoring and modeling the bathymetric evolution of the test dredge disposal site and the adjacent coastal region since inception in May 2005. This paper reports on the first 2.5 years of this monitoring program effort (May 2005 to December 2007) and assesses the short-term coastal response. Here are the key findings of this report: *Approximately half of the sediment that has been placed in the nearshore dredge-disposal site during the 2.5 years of this study remains within the dredge focus area. *In the winter of 2006-7, large waves transported the dredge-mound material onshore. *High rates of seasonal cross-shore sediment transport mask any potential profile change in the Coastal Profiling System data due to dredge placement. *Pockets of accretion have been recorded by topographic surveying adjacent to the dredge site, but it is unclear if the accretion is linked to the nourishment. *Cross-shore profile modeling suggests that dredge material must be placed in water depths no greater than 5 m to drive a positive shoreline response. *Area modeling demonstrates that the new dredge site increases wave dissipation and modifies local sediment-transport patterns, although the effect on the nearshore morphology is largely negligible. *Any increase in beach width or wave energy-dissipation related to the nourishment is likely to be realized only in the vicinity directly onshore of the nourishment site, which is several hundred meters south of the area of critical erosion. *Larger waves from the northwest and smaller waves from the west or southwest contribute most to the sediment transport from the dredge mound onshore.

California↗

Results of a workshop concerning impacts of various activities on the functions of bottomland hardwoods

Under Section 404 of the Clean Water Act, the U.S. Environmental Protection Agency (EPA) has regulatory responsibilities related to the discharge of dredged or fill material into the Nation’s waters. In addition to its advisory role in the U.S. Army Corps of Engineers' permit program, EPA has a number of specific authorities, including formulation of the Section 404(b)(1) guidelines, use of Section 404(c) to prohibit disposal at particular sites, and enforcement actions for unauthorized discharges. A number of recent court cases focus on the geographic scope of Section 404 jurisdiction in potential bottomland hardwood (BLH) wetlands and the nature of landclearing activities in these areas that require a permit under Section 404. Accordingly, EPA needs to establish the scientific basis for implementing its responsibilities under Section 404 in bottomland hardwoods. EPA is approaching this task through a series of workshops designed to provide current scientific information on bottomland hardwoods and to organize that information in a manner pertinent to key policy questions. The first two workshops in the series were originally conceived as technically oriented meetings that would provide the information necessary to develop policy options at the third workshop. More specifically, the first workshop was designed to examine a zonation concept as a means of characterizing different BLH communities and describing variations in their functions along a soil moisture gradient. The second workshop was perceived as an attempt to evaluate the impacts of various activities on those functions. However, one conclusion of the first workshop, which was held in December 1984 in St. Francisville, Louisiana, was that the zonation approach does not describe the variability in the functions performed by BLH ecosystems sufficiently well to allow its use as the sole basis for developing a regulatory framework. That is, factors other than zone were considered critical for an effective characterization of the structure and functions of bottomland hardwoods. The approach to the second workshop, the results of which are described in this report, was therefore modified in response to the conclusions from the first workshop. The focus of the second workshop remained an analysis of the impacts of various activities or the functions of BLH ecosystems. However, as a prerequisite to this analysis, participants were also asked to develop a list of characteristics that determine the extent to which BLH sites perform the important functions. The workshop was organized such that alternating plenary and workgroup sessions allowed ample time for communication while still maintaining a focus on the overall goal. In the initial session, various individuals gave presentations concerning methodologies for evaluating the functions performed by wetlands, factors influencing the conversion of BLH forests to other uses, and the impacts of conversion activities. These were followed by a series of case study presentations designed to familiarize participants with the kinds of issues that are dealt with in the Section 404 program. These presentations are cited in this report as (author, workshop presentation). At the conclusion of these presentations, participants were divided into six workgroups to examine the functions of BLH ecosystems in the areas of hydrology, water quality, fisheries, wildlife, ecosystem processes, and culture/recreation/economics. Each workgroup was asked to undertake the following tasks. 1. Developed a list of functions performed by BLH ecosystems from the perspective of the workgroup's expertise and area of responsibility. 2. Identify those activities (e.g., impoundment construction, conversion to soybean farming) that impact the major functions (e.g., sediment retention, detrital export) performed by BLH ecosystems. 3. Develop a list of characteristics that determine the extent to which a BLH site performs each function and describe the relationship of each characteristic to the function. Develop, with supporting evidence where possible, an analysis of the impact of each activity (Task 2) on each characteristic (Task 3) and on each function as a whole. Upon completion of Task 2, in an effort to provide some uniformity in the analysis by the various workgroups, EPA personnel and several participants met and compiled a complete list of all the activities identified as having significant impacts in bottomland hardwoods (Table 1). From this list the group derived a set of seven activities, and a number of specific actions associated with each, for analysis by the workgroups (Table 2). These activities were selected on the basis of their perceived importance in BLH ecosystems and their interest from the perspective of EPA. Each workgroup was also encourage to ass any activities of particular important from its perspective. The workgroup reports that follow document the results of discussion concerning the above tasks. The WORKSHOP SUMMARY attempts to summarize these workgroup results, discuss availability of information, and identify some problems that must be addressed prior to the third workshop in this series.

Report↗

Techniques to improve ecological interpretability of black box machine learning models

Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with a categorical response variable. They also tend to be robust against outliers. However, their black-box nature makes it difficult to interpret these models. We introduce several recently developed statistical tools to the environmental research community in order to advance interpretation of these black-box models. To analyze the properties of the tools, we applied gradient boosted trees to investigate biological health of streams within the contiguous USA, as measured by a benthic macroinvertebrate biotic index. Based on these data and a simulation study, we demonstrate the advantages and limitations of partial dependence plots (PDP), individual conditional expectation (ICE) curves and accumulated local effects (ALE) in their ability to identify covariate–response relationships. Additionally, interaction effects were quantified according to interaction strength (IAS) and Friedman’s H 2 "> H 2 statistic. Interpretable machine learning techniques are useful tools to open the black-box of gradient boosted trees in the environmental sciences. This finding is supported by our case study on the effect of impervious surface on the benthic condition, which agrees with previous results in the literature. Overall, the most important variables were ecoregion, bed stability, watershed area, riparian vegetation and catchment slope. These variables were also present in most identified interaction effects. In conclusion, graphical tools (PDP, ICE, ALE) enable visualization and easier interpretation of GBT but should be supported by analytical statistical measures. Future methodological research is needed to investigate the properties of interaction tests. Supplementary materials accompanying this paper appear on-line.

Journal of Agricultural, Biological, and Environme↗