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Depositional environments of the Pennsylvanian Pottsville Formation in the Black Warrior basin of Alabama
The Pennsylvanian Pottsville Formation of the Black Warrior basin in Alabama comprises as much as 3000 m of shale, sandstone, and coal. The boundary between the informal units of the lower Pottsville and the upper Pottsville is the base of the Black Creek coal group, in the middle part of the section. Lower Pottsville strata include orthoquartzitic sandstone, shale, and coal interpreted as having been deposited in a barrier/back-barrier setting. Upper Pottsville strata consist of lithic arenite, shale, coal, and minor amounts of orthoquartzite, and are interpreted as representing a lateral gradation from lower delta plain to barrier bar. Previous studies indicated northward sediment dispersal. The change in sedimentation patterns in the middle part of the Pottsville suggests introduction into the basin of sediments from an eastern source during Pottsville deposition.
Submarine sand dunes and sedimentary environments in Oceanographer Canyon.
Observations from research submersibles in the northern part of Oceanographer Canyon reveal the presence of an extensive field of large sand dunes on the canyon floor. The dunes are medium to coarse sand, are oriented across the axis, and the largest of them are as high as 3 m and have wavelengths up to 15 m. Their asymmetry, grain size, and height suggest that they are formed by axial currents flowing up- and downcanyon and that the largest dunes require flows of at least 70 cm/sec. Shelf sand, low in silt and clay content, is transported by currents down and along the canyon walls onto the canyon floor. As the sand enters the canyon, it is mixed with immobile gravel deposits on the canyon rim; lower on the walls, the sand is mixed with silt and clay burrowed by organisms from the semiconsolidated sandy silt that underlies the canyon walls and floor. Upon reaching the canyon floor, the sand is sculpted into bed forms by currents, and the fines are winnowed out and transported out of the canyon. At present, the shelf and canyon walls are being eroded by bottom currents and burrowing organisms, whereas the canyon floor is covered by mobile sand that moves both up and down the axis in this part of the canyon.
Patterns of coral disease across the Hawaiian Archipelago: Relating disease to environment
In Hawaii, coral reefs occur across a gradient of biological (host abundance), climatic (sea surface temperature anomalies) and anthropogenic conditions from the human-impacted reefs of the main Hawaiian Islands (MHI) to the pristine reefs of the northwestern Hawaiian Islands (NWHI). Coral disease surveys were conducted at 142 sites from across the Archipelago and disease patterns examined. Twelve diseases were recorded from three coral genera (Porites, Montipora, Acropora) with Porites having the highest prevalence. Porites growth anomalies (PorGAs) were significantly more prevalent within and indicative of reefs in the MHI and Porites trematodiasis (PorTrm) was significantly more prevalent within and indicative of reefs in the NWHI. Porites tissue loss syndrome (PorTLS) was also important in driving regional differences but that relationship was less clear. These results highlight the importance of understanding disease ecology when interpreting patterns of disease occurrence. PorTrm is caused by a parasitic flatworm that utilizes multiple hosts during its life cycle (fish, mollusk and coral). All three hosts must be present for the disease to occur and higher host abundance leads to higher disease prevalence. Thus, a high prevalence of PorTrm on Hawaiian reefs would be an indicator of a healthy coral reef ecosystem. In contrast, the high occurrence of PorGAs within the MHI suggests that PorGAs are related, directly or indirectly, to some environmental co-factor associated with increased human population sizes. Focusing on the three indicator diseases (PorGAs, PorTrm, PorTLS) we used statistical modeling to examine the underlying associations between disease prevalence and 14 different predictor variables (biotic and abiotic). All three diseases showed positive associations with host abundance and negative associations with thermal stress. The association with human population density differed among disease states with PorGAs showing a positive and PorTrm showing a negative association, but no significant explanatory power was offered for PorTLS.
A network extension of species occupancy models in a patchy environment applied to the Yosemite toad ( Anaxyrus canorus )
A central challenge of conservation biology is using limited data to predict rare species occurrence and identify conservation areas that play a disproportionate role in regional persistence. Where species occupy discrete patches in a landscape, such predictions require data about environmental quality of individual patches and the connectivity among high quality patches. We present a novel extension to species occupancy modeling that blends traditionalpredictions of individual patch environmental quality with network analysis to estimate connectivity characteristics using limited survey data. We demonstrate this approach using environmental and geospatial attributes to predict observed occupancy patterns of the Yosemite toad ( Anaxyrus (= Bufo) canorus ) across >2,500 meadows in Yosemite National Park (USA). A. canorus , a Federal Proposed Species, breeds in shallow water associated with meadows. Our generalized linear model (GLM) accurately predicted ~84% of true presence-absence data on a subset of data withheld for testing. The predicted environmental quality of each meadow was iteratively ‘boosted’ by the quality of neighbors within dispersal distance. We used this park-wide meadow connectivity network to estimate the relative influence of an individual Meadow’s ‘environmental quality’ versus its ‘network quality’ to predict: a) clusters of high quality breeding meadows potentially linked by dispersal, b) breeding meadows with high environmental quality that are isolated from other such meadows, c) breeding meadows with lower environmental quality where long-term persistence may critically depend on the network neighborhood, and d) breeding meadows with the biggest impact on park-wide breeding patterns. Combined with targeted data on dispersal, genetics, disease, and other potential stressors, these results can guide designation of core conservation areas for A. canorus in Yosemite National Park.
Roles of host and environment in shift of primary anthrax host species in Kruger National Park
Environmental and climatic factors, as well as host demographics and behaviour, significantly influence the exposure of herbivorous mammalian hosts to pathogens such as Bacillus anthracis , the causative agent of anthrax. Until the early 1990s in Kruger National Park (KNP), kudu ( Tragelaphus strepsiceros ) was the host species most affected by anthrax, with outbreaks occurring predominantly in the dry season, particularly during drought cycles. However, the most affected host species has shifted to impala ( Aepyceros melampus ), with more frequent anthrax outbreaks during the wet season. This study investigates the roles of environmental variation and other host species in this shift. Temporal trends in environmental variables such as precipitation, soil moisture, temperature, and normalised difference vegetation index (NDVI) were analyzed in relation to anthrax occurrence (presence/ absence and counts). Additionally, correlations between host species’ densities and anthrax mortalities over time were examined. Anthrax cases in 1990 were concentrated in the central and northern regions of KNP(excluding Pafuri), primarily affected kudus; while subsequent mortalities affected mostly impala and were restricted to the far north, in Pafuri. Significant correlations were found between kudu anthrax mortality and a decrease in NDVI, average temperature, SPI-6 and SPI-12 (Standardised Precipitation Index in various time intervals. Conversely, anthrax occurrence in impalas was associated with a decline in SPI-3, and temperature rise, with increased mortality during the rainy season. Elephant density correlated negatively with kudu mortality, but a positive correlation with both impala mortality and impala density. The study concludes that environmental variables and species’ densities may alter the diversity and frequency of hosts exposed to B . anthracis . Climate extremes and alterations therein may exacerbate anthrax severity by modifying species susceptibility and their probability of exposure over time.
Some effects of sublethal concentrations of sodium arsenite on bluegills and the aquatic environment
Bluegills were exposed to sodium arsenite at various concentrations and treatment frequencies in outdoor pools. The effects of the treatments on the fish and invertebrates in the pools were assessed. Applications totaling 4.0 ppm or more of NaAsO 2 during the experiment were reflected in reduced survival and growth of the fish, with immature fish being affected to a greater degree than adults. Some pathological changes were observed in adults. Substantial residues of arsenic were found in the water, bottom soil, and throughout the organs and flesh of the bluegills at the termination of the experiment. Bottom fauna and plankton populations were reduced or inhibited in several pools with the highest concentrations of the herbicide.
Desert tortoise hibernation: Temperatures, timing, and environment
This research examined the onset, duration, and termination of hibernation in Desert Tortoises ( Gopherus agassizii ) over several years at multiple sites in the northeastern part of their geographic range, and recorded the temperatures experienced by tortoises during winter hibernation. The timing of hibernation by Desert Tortoises differed among sites and years. Environmental cues acting over the short-term did not appear to influence the timing of the hibernation period. Different individual tortoises entered hibernation over as many as 44 days in the fall and emerged from hibernation over as many as 49 days in the spring. This range of variation in the timing of hibernation indicates a weak influence at best of exogenous cues hypothesized to trigger and terminate hibernation. There do appear to be regional trends in hibernation behavior as hibernation tended to begin earlier and continue longer at sites that were higher in elevation and generally cooler. The emergence date was generally more similar among study sites than the date of onset. While the climate and the subsequent timing of hibernation differed among sites, the average temperatures experienced by tortoises while hibernating differed by only about five degrees from the coldest site to the warmest site. 2007 by the American Society of Ichthyologists and Herpetologists.
Spatial patterns in occupancy and reproduction of Golden Eagles during drought: Prospects for conservation in changing environments
We used a broad-scale sampling design to investigate spatial patterns in occupancy and breeding success of territorial pairs of Golden Eagles ( Aquila chrysaetos ) in the Diablo Range, California, USA, during a period of exceptional drought (2014–2016). We surveyed 138 randomly selected sample sites over 4 occasions each year and identified 199 pairs of eagles, 100 of which were detected in focal sample sites. We then used dynamic multistate modeling to identify relationships between site occupancy and reproduction of Golden Eagles relative to spatial variability in landscape composition and drought conditions. We observed little variability among years in site occupancy (3-yr mean = 0.74), but the estimated annual probability of successful reproduction was relatively low during the study period and declined from 0.39 (± 0.08 SE) to 0.18 (± 0.07 SE). Probabilities of site occupancy and reproduction were substantially greater at sample sites that were occupied by successful breeders in the previous year, indicating the presence of sites that were consistently used by successfully reproducing eagles. We found strong evidence for nonrandom spatial distribution in both occupancy and reproduction: Sites with the greatest potential for occupancy were characterized by rugged terrain conditions with intermediate amounts of grassland interspersed with patches of oak woodland and coniferous forest, whereas successful reproduction was most strongly associated with the amount of precipitation that a site received during the nesting period. Our findings highlight the contribution of consistently occupied and productive breeding sites to overall productivity of the local breeding population, and show that both occupancy and reproduction at these sites were maintained even during a period of exceptional drought. Our approach to quantifying and mapping site quality should be especially useful for the spatial prioritization of compensation measures intended to help offset the impacts of increasing human land use and development on Golden Eagles and their habitats.
Population estimates of Hyla cinerea (Schneider) (Green Tree frog) in an urban environment
Hyla cinerea (Green Treefrog) is a common wetlands species in the southeastern US. To better understand its population dynamics, we followed a relatively isolated population of Green Treefrogs from June 2004 through October 2004 at a federal office complex in Lafayette, LA. Weekly, Green Treefrogs were caught, measured, marked with VIE tags, and released. The data were used to estimate population size. The time frame was split into two periods: before and after August 17, 2004. Before August 17, 2004, the average estimated population size was 143, and after August 24, 2005, this value jumped to 446, an increase possibly due to tadpoles metamorphosing into adults.
Pollen evidence for late pleistocene bering land bridge environments from Norton Sound, Northeastern Bering Sea, Alaska
After more than half a century of paleoenvironmental investigations, disagreements persist as to the nature of vegetation type and climate of the Bering land bridge (BLB) during the late Wisconsin (Sartan) glacial interval. Few data exist from sites on the former land bridge, now submerged under the Bering and Chukchi Seas. Two hypotheses have emerged during the past decade. The first, based on pollen data from Bering Sea islands and adjacent mainlands of western Alaska and Northeast Siberia, represents the likely predominant vegetation on the Bering land bridge during full-glacial conditions: graminoid-herb-willow tundra vegetation associated with cold, dry winters and cool, dry summer climate. The second hypothesis suggests that dwarf birch-shrub-herb tundra formed a broad belt across the BLB, and that mesic vegetation was associated with cold, snowier winters and moist, cool summers. As a step towards resolving this controversy, a sediment core from Norton Sound, northeastern Bering Sea was radiocarbon dated and analyzed for pollen content. Two pollen zones were identified. The older, bracketed by radiocarbon ages of 29,500 and 11,515 14 C yr BP, contains pollen assemblages composed of grass, sedge, wormwood, willow, and a variety of herb (forb) taxa. These assemblages are interpreted to represent graminoid-herb-willow tundra vegetation that developed under an arid, cool climate regime. The younger pollen zone sediments were deposited about 11,515 14 C yr BP, when rising sea level had begun to flood the BLB. This younger pollen zone contains pollen of birch, willow, heaths, aquatic plants, and spores of sphagnum moss. This is interpreted to represent a Lateglacial dwarf birch-heath-willow-herb tundra vegetation, likely associated with a wetter climate with deeper winter snows, and moist, cool summers. This record supports the first hypothesis, that graminoid-herb-willow tundra vegetation extended into the lowlands of the BLB during full glacial conditions of the late Wisconsin.
Amphibian populations in the terrestrial environment: Is there evidence of declines of terrestrial forest amphibians in northwestern California?
Amphibian declines have been documented worldwide; however the vast majority are species associated with aquatic habitats. Information on the status and trends of terrestrial amphibians is almost entirely lacking. Here we use data collected across a 12-yr period (sampling from 1984-86 and from 1993-95) to address the question of whether evidence exists for declines among terrestrial amphibians in northwestern California forests. The majority of amphibians, both species and relative numbers, in these forests are direct-developing salamanders of the family Plethodontidae. We examined amphibian richness and evenness, and the relative abundances of the four most common species of plethodontid salamanders. We examined evidence of differences between years in two ecological provinces (coastal and interior) and across young, mature, and late seral forests and with reference to a moisture gradient from xeric to hydric within late seral forests. We found evidence of declines in species richness across years on late seral mesic stands and in the coastal ecological province, but these differences appeared to be caused by differences in the detection of rarer species, rather than evidence of an overall pattern. We also found differences among specific years in numbers of individuals of the most abundant species, Ensatina eschscholtzii, but these differences also failed to reflect a consistent pattern of declines between the two decadal sample periods. Results showing differences in richness, evenness, and relative abundances along both the seral and moisture continua were consistent with previous research. Overall, we found no compelling evidence of a downward trend in terrestrial plethodontid salamanders. We believe that continued monitoring of terrestrial salamander populations is important to understanding mechanisms of population declines in amphibian species. Copyright 2007 Society for the Study of Amphibians and Reptiles.
Factors affecting the thermal environment of Agassiz’s Desert Tortoise ( Gopherus agassizii ) cover sites in the Central Mojave Desert during periods of temperature extremes
Agassiz's Desert Tortoises (Gopherus agassizii) spend >95% of their lives underground in cover sites that serve as thermal buffers from temperatures, which can fluctuate >40°C on a daily and seasonal basis. We monitored temperatures at 30 active tortoise cover sites within the Soda Mountains, San Bernardino County, California, from February 2004 to September 2006. Cover sites varied in type and structural characteristics, including opening height and width, soil cover depth over the opening, aspect, tunnel length, and surficial geology. We focused our analyses on periods of extreme temperature: in summer, between July 1 and September 1, and winter, between November 1 and February 15. With the use of multivariate regression tree analyses, we found cover-site temperatures were influenced largely by tunnel length and subsequently opening width and soil cover. Linear regression models further showed that increasing tunnel length increased temperature stability and dampened seasonal temperature extremes. Climate change models predict increased warming for southwestern North America. Cover sites that buffer temperature extremes and fluctuations will become increasingly important for survival of tortoises. In planning future translocation projects and conservation efforts, decision makers should consider habitats with terrain and underlying substrate that sustain cover sites with long tunnels and expanded openings for tortoises living under temperature extremes similar to those described here or as projected in the future.
Grid computing in the SCEC community modeling environment
No abstract available.
Sedimentary environments of east and west Flower Garden Banks area
No abstract available.
Effects of climate change on long-term population growth of pronghorn in an arid environment
Climate often drives ungulate population dynamics, and as climates change, some areas may become unsuitable for species persistence. Unraveling the relationships between climate and population dynamics, and projecting them across time, advances ecological understanding that informs and steers sustainable conservation for species. Using pronghorn ( Antilocapra americana ) as an ecological model, we used a Bayesian approach to analyze long-term population, precipitation, and temperature data from 18 populations in the southwestern United States. We determined which long-term (12 and 24 months) or short-term (gestation trimester and lactation period) climatic conditions best predicted annual rate of population growth (λ). We used these predictions to project population trends through 2090. Projections incorporated downscaled climatic data matched to pronghorn range for each population, given a high and a lower atmospheric CO 2 concentration scenario. Since the 1990s, 15 of the pronghorn populations declined in abundance. Sixteen populations demonstrated a significant relationship between precipitation and λ, and in 13 of these, temperature was also significant. Precipitation predictors of λ were highly seasonal, with lactation being the most important period, followed by early and late gestation. The influence of temperature on λ was less seasonal than precipitation, and lacked a clear temporal pattern. The climatic projections indicated that all of these pronghorn populations would experience increased temperatures, while the direction and magnitude of precipitation had high population-specific variation. Models predicted that nine populations would be extirpated or approaching extirpation by 2090. Results were consistent across both atmospheric CO 2 concentration scenarios, indicating robustness of trends irrespective of climatic severity. In the southwestern United States, the climate underpinning pronghorn populations is shifting, making conditions increasingly inhospitable to pronghorn persistence. This realization informs and steers conservation and management decisions for pronghorn in North America, while exemplifying how similar research can aid ungulates inhabiting arid regions and confronting similar circumstances elsewhere.
Development of a passive, in situ, integrative sampler for hydrophilic organic contaminants in aquatic environments
Increasingly it is being realized that a holistic hazard assessment of complex environmental contaminant mixtures requires data on the concentrations of hydrophilic organic contaminants including new generation pesticides, pharmaceuticals, personal care products, and many chemicals associated with household, industrial, and agricultural wastes. To address this issue, we developed a passive in situ sampling device (the polar organic chemical integrative sampler [POCIS]) that integratively concentrates trace levels of complex mixtures of hydrophilic environmental contaminants, enables the determination of their time-weighted average water concentrations, and provides a method of estimating the potential exposure of aquatic organisms to the complex mixture of waterborne contaminants. Using a prototype sampler, linear uptake of selected herbicides and pharmaceuticals with log K ow S < 4.0 was observed for up to 56 d. Estimation of the ambient water concentrations of chemicals of interest is achieved by using appropriate uptake models and determination of POCIS sampling rates for appropriate exposure conditions. Use of POCIS in field validation studies targeting the herbicide diuron in the United Kingdom resulted in the detection of the chemical at estimated concentrations of 190 to 600 ng/L. These values are in agreement with reported levels found in traditional grab samples taken concurrently.
Environment of ore deposition in the Creede mining district, San Juan Mountains, Colorado: Part VI. Maximum duration for mineralization of the OH vein
The rate at which ore deposits form is one of the least well established parameters in all of economic geology. However, increased detail in sampling, improved technology of dating, and sophistication in modeling are reducing the uncertainties and establishing that ore formation, at least for the porphyry copper-skarn-epithermal base and precious metals deposit package, may take place in surprisingly brief intervals. This contribution applies another approach to examine the duration of mineralization. The degree to which compositional gradients within single crystals has flattened through solid-state diffusion offers a measure of the thermal dose (that is temperature combined with time) that the crystals have been subjected to since deposition. Here we examine the steepness of gradients in iron content within individual single sphalerite crystals from the epithermal silver-lead-zinc deposit in the OH vein at Creede, Colorado. Two initial textures are considered: growth-banded crystals and compositionally contrasting overgrowths that succeed crosscutting dissolution or fractured surfaces. The model used estimates the maximum possible time by assuming a perfectly sharp original compositional step, and it asks how long it would take at a known temperature for the gradient measured today to have formed. Applying the experimentally determined diffusion rates of Mizuta (1988a) to compositional gradients (ranging from 0.4-2.2 mol % FeS/??m) measured by the electron microprobe in 2-??m steps on banded sphalerite formed early in the paragenetic history yields a maximum duration of less than ???10,000 yr. Sphalerite from a solution unconformity in a position midway through the paragenetic sequence is indistinguishable from instantaneous deposition, supporting the conclusion of rapid ore formation. While this formation interval seems very brief, it is consistent with less well constrained estimates using entirely different criteria. ?? 2005 Society of Economic Geologists, Inc.