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Physics-guided machine learning from simulation data: An application in modeling lake and river systems

This paper proposes a new physics-guided machine learning approach that incorporates the scientific knowledge in physics-based models into machine learning models. Physics-based models are widely used to study dynamical systems in a variety of scientific and engineering problems. Although they are built based on general physical laws that govern the relations from input to output variables, these models often produce biased simulations due to inaccurate parameterizations or approximations used to represent the true physics. In this paper, we aim to build a new data-driven framework to monitor dynamical systems by extracting general scientific knowledge embodied in simulation data generated by the physics-based model. To handle the bias in simulation data caused by imperfect parameterization, we propose to extract general physical relations jointly from multiple sets of simulations generated by a physics-based model under different physical parameters. In particular, we develop a spatio-temporal network architecture that uses its gating variables to capture the variation of physical parameters. We initialize this model using a pre-training strategy that helps discover common physical patterns shared by different sets of simulation data. Then we fine-tune it using limited observation data via a contrastive learning process. By leveraging the complementary strength of machine learning and domain knowledge, our method has been shown to produce accurate predictions, use less training samples and generalize to out-of-sample scenarios. We further show that the method can provide insights about the variation of physical parameters over space and time in two domain applications: predicting temperature in streams and predicting temperature in lakes.

Conference Paper↗

Comparison with CLPX II airborne data using DMRT model

In this paper, we considered a physical-based model which use numerical solution of Maxwell Equations in three-dimensional simulations and apply into Dense Media Radiative Theory (DMRT). The model is validated in two specific dataset from the second Cold Land Processes Experiment (CLPX II) at Alaska and Colorado. The data were all obtain by the Ku-band (13.95GHz) observations using airborne imaging polarimetric scatterometer (POLSCAT). Snow is a densely packed media. To take into account the collective scattering and incoherent scattering, analytical Quasi-Crystalline Approximation (QCA) and Numerical Maxwell Equation Method of 3-D simulation (NMM3D) are used to calculate the extinction coefficient and phase matrix. DMRT equations were solved by iterative solution up to 2 nd order for the case of small optical thickness and full multiple scattering solution by decomposing the diffuse intensities into Fourier series was used when optical thickness exceed unity. It was shown that the model predictions agree with the field experiment not only co-polarization but also cross-polarization. For Alaska region, the input snow structure data was obtain by the in situ ground observations, while for Colorado region, we combined the VIC model to get the snow profile. ??2009 IEEE.

Conference Paper↗

Vicarious calibration of GOES imager visible channel using the moon

In this paper, we study the feasibility of a method for vicarious calibration of the GOES Imager visible channel using the Moon. The measured Moon irradiance from 26 undipped moon imagers exhausted all the potential Moon appearances between July 1998 and December 2005, together with the seven scheduled Moon observation data obtained after November 2005, were compared with the USGS lunar model results to estimate the degradation rate of the GOES-10 Imager visible channel. A total of nine methods of determining the space count and identifying lunar pixels were employed in this study to measure the GOES-10 Moon irradiance. Our results show that the selected mean and the masking Moon appears the best method. Eight of the nine resulting degradation rates range from 4.5%/year to 5.0%/year during the nearly nine years of data, which are consistent with most other degradation rates obtained for GOES-10 based on different references. In particular, the degradation rate from the Moon-based calibration (4.5%/year) agrees very well with the MODIS-based calibration (4.4%/year) over the same period, confirming the capability of relative and absolute calibration based on the Moon. Finally, our estimate of lunar calibration precision as applied to GOES-10 is 3.5%.

Conference Paper↗

Pore morphology effect in microlog for porosity prediction in a mature field

In an matured field, developed during the 1950s, no porosity logs were available from sources other than invaded zone resistivity Rxo . The microresistivity porosity is calibrated with the core porosity to yield an accurate estimate of the porosity. However, the procedure of calibrating the porosity with Rxo for a linear regression model may not be predictive without an understanding of the pore types in the reservoir interval. A thorough investigation of the pore types, based on the lithofacies description obtained from the core analysis, and its role in obtaining a good estimate of porosity is demonstrated in the Ogallah field. Therefore, the objective of this paper is to separate the porosity-microlog data into pore-type based zones with characteristic cementation exponents (m) in this multi-petrotype reservoir with a complex mixture of Arbuckle dolomite and sandstone rock. The value of m is critical in making estimates of water saturation. "Rule of thumb" values of cementation might lead to errors in water saturation on either the optimistic or the pessimistic side. The rock types in the Ogallah contain interparticle/intercrystalline, vugs and fractures distributed through the rock-facies, which influence the values of cementation factor. We use the modern typed well to shed light on the Archie's equation parameter values. Rock fabric numbers and flow zone indices have been identified for classification of dolomite and sandstone, respectively. The analysis brings out characteristic cementation factors for distinct pore types in the Arbuckle rock. The porosity predictions The analysis results also compliment the petrofacies delineation using LDA in this complicated rock layout as a quality control of the statistical application. The comparison between the predicted and core porosities shows a significant improvement over using a single m value for carbonates and sandstones which will lead to improved description of a matured field. Copyright 2011, Society of Petroleum Engineers.

Conference Paper↗

Application of decision-tree techniques to forest group and basal area mapping using satellite imagery and forest inventory data

Accurate, current, and cost-effective fire fuel data are required by management and fire science communities for use in reducing wildland fire hazards over large areas. In this paper we present results of applying decision-tree techniques to mapping vegetation parameters (such as vegetation types and canopy structure classification) required for fire fuel characterization. Specifically, we present preliminary results of mapping forest types and average basal area by different forest types at 30-meter resolution. Input data into the decision tree model included Landsat-7 ETM+ spring, summer and fall greenness, brightness and wetness of the tasseled cap transformation, topographic data layers such as slope and elevation, and forest variables measured on inventory plots in the Mid-Atlantic region. Using decision-tree models, eight forest types were successfully identified in training cases and mapped for the entire mapping area. Forest basal area per unit area (conifer and deciduous) was estimated as well using regression tree models. Cross-validation conducted for both forest types and basal area showed that discrete forest type estimation error was 35% and continuous basal area relative errors were between 58 and 72%. Accuracy was higher in homogeneous forested lands and lower in areas with fragmented forest cover. The study demonstrated that decision tree and regression tree methods are efficient for large-area vegetation mapping if sufficient large-amount of reference data are available.

Conference Paper↗

CGS: Coupled growth and survival model with cohort fairness

Fish modeling in complex environments is critical for understanding drivers of population dynamics in aquatic systems. This paper proposes a Bayesian network method for modeling fish survival and growth over multiple connected rivers. Traditional fish survival models capture the effect of multiple environmental drivers (e.g., stream temperature, stream flow) by adding different variables, which increases model complexity and results in very long and impractical run times (i.e., weeks). We propose a coupled survival-growth model that leverages the observations from both sources simultaneously. It also integrates the Bayesian process into the neural network model to efficiently capture complex variable relationships in the system while also conforming to known survival processes used in existing fish models. To further reduce the performance disparity of fish body length across cohorts, we propose two approaches for enforcing fairness by the adjustment of training priorities and data augmentation. The results based on a real-world fish dataset collected in Massachusetts, US demonstrate that the proposed method can greatly improve prediction accuracy in modeling survival and body length compared to independent models on survival and growth, and effectively reduce the performance disparity across cohorts. The fish growth and movement patterns discovered by the proposed model are also consistent with prior studies in the same region, while vastly reducing run times and memory requirements.

Conference Paper↗

Cacades: A reliable dissemination protocol for data collection sensor network

In this paper, we propose a fast and reliable data dissemination protocol Cascades to disseminate data from the sink(base station) to all or a subset of nodes in a data collection sensor network. Cascades makes use of the parentmonitor-children analogy to ensure reliable dissemination. Each node monitors whether or not its children have received the broadcast messages through snooping children's rebroadcasts or waiting for explicit ACKs. If a node detects a gap in its message sequences, it can fetch the missing messages from its neighbours reactively. Cascades also considers many practical issues for field deployment, such as dynamic topology, link/node failure, etc.. It therefore guarantees that a disseminated message from the sink will reach all intended receivers and the dissemination is terminated in a short time period. Notice that, all existing dissemination protocols either do not guarantee reliability or do not terminate [1, 2], which does not meet the requirement of real-time command control. We conducted experiment evaluations in both TOSSIM simulator and a sensor network testbed to compare Cascades with those existing dissemination protocols in TinyOS sensor networks, which show that Cascades achieves a higher degree of reliability, lower communication cost, and less delivery delay. ??2009 IEEE.

Conference Paper↗

One perspective on spatial variability in geologic mapping

This paper discusses some of the differences between geologic mapping and soil mapping, and how the resultant maps are interpreted. The role of spatial variability in geologic mapping is addressed only indirectly because in geologic mapping there have been few attempts at quantification of spatial differences. This is largely because geologic maps deal with temporal as well as spatial variability and consider time, age, and origin, as well as composition and geometry. Both soil scientists and geologists use spatial variability to delineate mappable units; however, the classification systems from which these mappable units are defined differ greatly. Mappable soil units are derived from systematic, well-defined, highly structured sets of taxonomic criteria; whereas mappable geologic units are based on a more arbitrary hierarchy of categories that integrate many features without strict values or definitions. Soil taxonomy is a sorting tool used to reduce heterogeneity between soil units. Thus at the series level, soils in any one series are relatively homogeneous because their range of properties is small and well-defined. Soil maps show the distribution of soils on the land surface. Within a map area, soils, which are often less than 2 m thick, show a direct correlation to topography and to active surface processes as well as to parent material.

Conference Paper↗

The case for infrasound as the long-range map cue in avian navigation

Of the various 'map' and 'compass' components of Kramer's avian navigational model, the long-range map component is the least well understood. In this paper atmospheric infrasounds are proposed as the elusive longrange cues constituting the avian navigational map. Although infrasounds were considered a viable candidate for the avian map in the 1970s, and pigeons in the laboratory were found to detect sounds at surprisingly low frequencies (0.05 Hz), other tests appeared to support either of the currently favored olfactory or magnetic maps. Neither of these hypotheses, however, is able to explain the full set of observations, and the field has been at an impasse for several decades. To begin, brief descriptions of infrasonic waves and their passage through the atmosphere are given, followed by accounts of previously unexplained release results. These examples include 'release-site biases' which are deviations of departing pigeons from the homeward bearing, an annual variation in homing performance observed only in Europe, difficulties orienting over lakes and above temperature inversions, and the mysterious disruption of several pigeon races. All of these irregularities can be consistently explained by the deflection or masking of infrasonic cues by atmospheric conditions or by other infrasonic sources (microbaroms, sonic booms), respectively. A source of continuous geographic infrasound generated by atmosphere-coupled microseisms is also proposed. In conclusion, several suggestions are made toward resolving some of the conflicting experimental data with the pigeons' possible use of infrasonic cues.

Conference Paper↗

Time-optimum packet scheduling for many-to-one routing in wireless sensor networks

This paper studies the WSN application scenario with periodical traffic from all sensors to a sink. We present a time-optimum and energy-efficient packet scheduling algorithm and its distributed implementation. We first give a general many-to-one packet scheduling algorithm for wireless networks, and then prove that it is time-optimum and costs max(2N(u1) - 1, N(u 0) -1) time slots, assuming each node reports one unit of data in each round. Here N(u0) is the total number of sensors, while N(u 1) denotes the number of sensors in a sink's largest branch subtree. With a few adjustments, we then show that our algorithm also achieves time-optimum scheduling in heterogeneous scenarios, where each sensor reports a heterogeneous amount of data in each round. Then we give a distributed implementation to let each node calculate its duty-cycle locally and maximize efficiency globally. In this packet scheduling algorithm, each node goes to sleep whenever it is not transceiving, so that the energy waste of idle listening is also eliminated. Finally, simulations are conducted to evaluate network performance using the Qualnet simulator. Among other contributions, our study also identifies the maximum reporting frequency that a deployed sensor network can handle. ??2006 IEEE.

Conference Paper↗

Introduction to the U.S. Geological Survey National Water-Quality Assessment (NAWQA) of ground-water quality trends and comparison to other national programs

Assessment of temporal trends in national ground-water quality networks are rarely published in scientific journals. This is partly due to the fact that long-term data from these types of networks are uncommon and because many national monitoring networks are not driven by hypotheses that can be easily incorporated into scientific research. The U.S. Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) since 1991 has to date (2006) concentrated on occurrence of contaminants because sufficient data for trend analysis is only just becoming available. This paper introduces the first set of trend assessments from NAWQA and provides an assessment of the success of the program. On a national scale, nitrate concentrations in ground water have generally increased from 1988 to 2004, but trends in pesticide concentrations are less apparent. Regionally, the studies showed high nitrate concentrations and frequent pesticide detections are linked to agricultural use of fertilizers and pesticides. Most of these areas showed increases in nitrate concentration within the last decade, and these increases are associated with oxic-geochemical conditions and well-drained soils. The current NAWQA plan for collecting data to define trends needs to be constantly reevaluated to determine if the approach fulfills the expected outcome. To assist this evaluation, a comparison of NAWQA to other national ground-water quality programs was undertaken. The design and spatial extent of each national program depend on many factors, including current and long-term budgets, purpose of the program, size of the country, and diversity of aquifer types. Comparison of NAWQA to nine other national programs shows a great diversity in program designs, but indicates that different approaches can achieve similar and equally important goals. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Conference Paper↗

Toward production from gas hydrates: Current status, assessment of resources, and simulation-based evaluation of technology and potential

Gas hydrates are a vast energy resource with global distribution in the permafrost and in the oceans. Even if conservative estimates are considered and only a small fraction is recoverable, the sheer size of the resource is so large that it demands evaluation as a potential energy source. In this review paper, we discuss the distribution of natural gas hydrate accumulations, the status of the primary international R&D programs, and the remaining science and technological challenges facing commercialization of production. After a brief examination of gas hydrate accumulations that are well characterized and appear to be models for future development and gas production, we analyze the role of numerical simulation in the assessment of the hydrate production potential, identify the data needs for reliable predictions, evaluate the status of knowledge with regard to these needs, discuss knowledge gaps and their impact, and reach the conclusion that the numerical simulation capabilities are quite advanced and that the related gaps are either not significant or are being addressed. We review the current body of literature relevant to potential productivity from different types of gas hydrate deposits, and determine that there are consistent indications of a large production potential at high rates over long periods from a wide variety of hydrate deposits. Finally, we identify (a) features, conditions, geology and techniques that are desirable in potential production targets, (b) methods to maximize production, and (c) some of the conditions and characteristics that render certain gas hydrate deposits undesirable for production. Copyright 2008, Society of Petroleum Engineers.

Conference Paper↗

Toward production from gas hydrates: Current status, assessment of resources, and simulation-based evaluation of technology and potential

Gas hydrates (GHs) are a vast energy resource with global distribution in the permafrost and in the oceans. Even if conservative estimates are considered and only a small fraction is recoverable, the sheer size of the resource is so large that it demands evaluation as a potential energy source. In this review paper, we discuss the distribution of natural GH accumulations, the status of the primary international research and development (R&D) programs, and the remaining science and technological challenges facing the commercialization of production. After a brief examination of GH accumulations that are well characterized and appear to be models for future development and gas production, we analyze the role of numerical simulation in the assessment of the hydrate-production potential, identify the data needs for reliable predictions, evaluate the status of knowledge with regard to these needs, discuss knowledge gaps and their impact, and reach the conclusion that the numerical-simulation capabilities are quite advanced and that the related gaps either are not significant or are being addressed. We review the current body of literature relevant to potential productivity from different types of GH deposits and determine that there are consistent indications of a large production potential at high rates across long periods from a wide variety of hydrate deposits. Finally, we identify (a) features, conditions, geology and techniques that are desirable in potential production targets; (b) methods to maximize production; and (c) some of the conditions and characteristics that render certain GH deposits undesirable for production. Copyright ?? 2009 Society of Petroleum Engineers.

Conference Paper↗

Hydrology and water quality in two mountain basins of the northeastern US: Assessing baseline conditions and effects of ski area development

Mountain regions throughout the world face intense development pressures associated with recreational and tourism uses. Despite these pressures, much of the research on bio-geophysical impacts of humans in mountain regions has focused on the effects of natural resource extraction. This paper describes findings from the first 3 years of a study examining high elevation watershed processes in a region undergoing alpine resort development. Our study is designed as a paired-watershed experiment. The Ranch Brook watershed (9.6 km2) is a relatively pristine, forested watershed and serves as the undeveloped 'control' basin. West Branch (11.7 km2) encompasses an existing alpine ski resort, with approximately 17% of the basin occupied by ski trails and impervious surfaces, and an additional 7% slated for clearing and development. Here, we report results for water years 2001-2003 of streamflow and water quality dynamics for these watersheds. Precipitation increases significantly with elevation in the watersheds, and winter precipitation represents 36-46% of annual precipitation. Artificial snowmaking from water within West Branch watershed currently augments annual precipitation by only 3-4%. Water yield in the developed basin exceeded that in the control by 18-36%. Suspended sediment yield was more than two and a half times greater and fluxes of all major solutes were higher in the developed basin. Our study is the first to document the effects of existing ski area development on hydrology and water quality in the northeastern US and will serve as an important baseline for evaluating the effects of planned resort expansion activities in this area.

Conference Paper↗

Partial differential equation driven dynamic graph networks for predicting stream water temperature

This paper presents a physics-guided machine learning approach that incorporates partial differential equations (PDEs) in a graph neural network model to improve the prediction of water temperature in river networks. The standard graph neural network model often uses pre-defined edge weights based on distance or similarity measures. Such static graph structure can be limited in capturing multiple processes in a physical system that interact and evolve over time. The limitation to represent underlying physical processes can severely affect the performance of the predictive model, especially when we have access to limited training data. To better capture the dynamic interactions among multiple segments in a river network, we built a dynamic graph model, where the graph structure is driven by the PDE that describes underlying physical processes. We further combine the dynamic graph structure and the recurrent layers to model temporal dependencies and improve the prediction. We demonstrate the effectiveness of the proposed method in a subnetwork of the Delaware River Basin. In particular, we show that the proposed method outperforms existing physics-based and machine learning models in temperature prediction using sparse observation data for training. The proposed method has also been shown to produce better performance when generalized to different seasons.

Conference Paper↗

Spatial and temporal trends in nitrate concentrations in the eastern San Joaquin Valley regional aquifer and implications for fertilizer management

Ground-water withdrawals in the San Joaquin Valley totaled 64 million m 3 /day (19 million ac-ft) in 2000, supplying about 45% of agricultural irrigation demand and about 80% of municipal supply (Hutson et al., 2004). Most of the population and ground-water use are in the eastern San Joaquin Valley, where reliance on ground water is expected to increase as a result of rapid population growth and limited surface water supplies. Protection of ground-water quality for future use requires monitoring and understanding the mechanisms controlling the long-term quality of ground water in the regional aquifer system. Nitrate has been widely detected above background concentrations in ground water in the eastern San Joaquin Valley. Nitrate concentrations (reported as nitrogen in this paper) were above the MCL of 10 mg/L in 24% of domestic wells screened in the shallow part of the aquifer that were sampled during 1993–95 (Dubrovsky et al., 1998) and the Central Valley is one of the top three regions in the state in terms of the number of public drinking-water wells exceeding the MCL for nitrate (California State Water Resources Control Board, 2002). To assess spatial and temporal trends in nitrate concentrations in the eastern San Joaquin Valley and to evaluate the long-term effects of nitrogen fertilizer use on ground-water quality in this region, data were evaluated at multiple spatial scales. Data from regional-scale monitoring networks were used to map the regional occurrence of nitrate and to determine whether shallow ground water containing elevated nitrate is migrating to deeper parts of the aquifer system. At the local scale, mean ground-water ages from analysis of age-dating tracers were combined with concentrations of nitrate to reconstruct nitrate inputs in recharge through time and to compare with estimated nitrogen applications. Ground-water flow and transport simulations of a typical public-supply well screened from about 100 to 400 ft below the water table were used to evaluate long-term concentrations beneath agricultural areas under different nitrogen management scenarios.

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Scientific objectives of the Gulf of Mexico gas hydrate JIP leg II drilling

The Gulf of Mexico Methane Hydrate Joint Industry Project (JIP) has been performing research on marine gas hydrates since 2001 and is sponsored by both the JIP members and the U.S. Department of Energy. In 2005, the JIP drilled the Atwater Valley and Keathley Canyon exploration blocks in the Gulf of Mexico to acquire downhole logs and recover cores in silt- and clay-dominated sediments interpreted to contain gas hydrate based on analysis of existing 3-D seismic data prior to drilling. The new 2007-2009 phase of logging and coring, which is described in this paper, will concentrate on gas hydrate-bearing sands in the Alaminos Canyon, Green Canyon, and Walker Ridge protraction areas. Locations were selected to target higher permeability, coarser-grained lithologies (e.g., sands) that have the potential for hosting high saturations of gas hydrate and to assist the U.S. Minerals Management Service with its assessment of gas hydrate resources in the Gulf of Mexico. This paper discusses the scientific objectives for drilling during the upcoming campaign and presents the results from analyzing existing seismic and well log data as part of the site selection process. Alaminos Canyon 818 has the most complete data set of the selected blocks, with both seismic data and comprehensive downhole log data consistent with the occurrence of gas hydrate-bearing sands. Preliminary analyses suggest that the Frio sandstone just above the base of the gas hydrate stability zone may have up to 80% of the available sediment pore space occupied by gas hydrate. The proposed sites in the Green Canyon and Walker Ridge areas are also interpreted to have gas hydrate-bearing sands near the base of the gas hydrate stability zone, but the choice of specific drill sites is not yet complete. The Green Canyon site coincides with a 4-way closure within a Pleistocene sand unit in an area of strong gas flux just south of the Sigsbee Escarpment. The Walker Ridge site is characterized by a sand-prone sedimentary section that rises stratigraphically across the base of the gas hydrate stability zone and that has seismic indicators of gas hydrate.

Conference Paper↗

Multi-species attributes as the condition for adaptive sampling of rare species using two-stage sequential sampling with an auxiliary variable

Assessing populations of rare species is challenging because of the large effort required to locate patches of occupied habitat and achieve precise estimates of density and abundance. The presence of a rare species has been shown to be correlated with presence or abundance of more common species. Thus, ecological community richness or abundance can be used to inform sampling of rare species. Adaptive sampling designs have been developed specifically for rare and clustered populations and have been applied to a wide range of rare species. However, adaptive sampling can be logistically challenging, in part, because variation in final sample size introduces uncertainty in survey planning. Two-stage sequential sampling (TSS), a recently developed design, allows for adaptive sampling, but avoids edge units and has an upper bound on final sample size. In this paper we present an extension of two-stage sequential sampling that incorporates an auxiliary variable (TSSAV), such as community attributes, as the condition for adaptive sampling. We develop a set of simulations to approximate sampling of endangered freshwater mussels to evaluate the performance of the TSSAV design. The performance measures that we are interested in are efficiency and probability of sampling a unit occupied by the rare species. Efficiency measures the precision of population estimate from the TSSAV design relative to a standard design, such as simple random sampling (SRS). The simulations indicate that the density and distribution of the auxiliary population is the most important determinant of the performance of the TSSAV design. Of the design factors, such as sample size, the fraction of the primary units sampled was most important. For the best scenarios, the odds of sampling the rare species was approximately 1.5 times higher for TSSAV compared to SRS and efficiency was as high as 2 (i.e., variance from TSSAV was half that of SRS). We have found that design performance, especially for adaptive designs, is often case-specific. Efficiency of adaptive designs is especially sensitive to spatial distribution. We recommend that simulations tailored to the application of interest are highly useful for evaluating designs in preparation for sampling rare and clustered populations.

Conference Paper↗