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USGS Telecommunications Responding to Change

The telecommunications industry is undergoing tremendous change due to the court ordered breakup of the monopoly once enjoyed by American Telephone & Telegraph (AT&T). This action has resulted in a plethora of new services and products in all of the communications fields, including traditional voice and data. The new products are making extensive use of computer technology. At the same time, costs of telecommunications services have risen dramatically over the past three years. This article reviews some of the major actions that the Geological Survey has taken in response to these changes.

Journal of Surveying Engineering↗

Magnetic monitoring of earth and space

For centuries, navigators of the world’s oceans have been familiar with an effect of Earth’s magnetic field: It imparts a directional preference to the needle of a compass. Although in some settings magnetic orientation remains important, the modern science of geomagnetismhas emerged from its romantic nautical origins and developed into a subject of great depth and diversity. The geomagnetic field is used to explore the dynamics of Earth’s interior and its surrounding space environment, and geomagnetic data are used for geophysical mapping, mineral exploration, risk mitigation, and other practical applications. A global distribution of ground-based magnetic observatories supports those pursuits by providing accurate records of the magnetic-field direction and intensity at fixed locations and over long periods of time. Magnetic observatories were first established in the early 19th century in response to the influence of Alexander von Humboldt and Carl Friedrich Gauss. Since then, magnetic measurement has advanced significantly, progressing from simple visual readings of magnetic survey instruments to include automatic photographic measurement and modern electronic acquisition. To satisfy the needs of the scientific community, observatories are being upgraded to collect data that meet ever more stringent standards, to achieve higher acquisition frequencies, and to disseminate data in real time. To appreciate why data from magnetic observatories can be used for so many purposes, one needs only to recall that the geomagnetic field is a continuum, connecting the different parts of Earth to each other and to nearby space. Beneath our feet and above our heads, electric currents generate magnetic fields that contribute to the totality of the geomagnetic field measured at an observatory on Earth’s surface. The many physical processes that operate in each geophysical domain give rise to a complicated field that exhibits a wide variety of time-dependent behavior. In this article I review the status of the global community of magnetic observatories, show how Earth and space can be monitored for purposes of scientific understanding and practical application, and highlight the role played by magnetic observatories in the history of geomagnetism research.

Physics Today↗

Soil nutrients influence spatial distributions of tropical trees species

The importance of niche vs. neutral assembly mechanisms in structuring tropical tree communities remains an important unsettled question in community ecology [Bell G (2005) Ecology 86:1757-1770]. There is ample evidence that species distributions are determined by soils and habitat factors at landscape (<104 km2) and regional scales. At local scales (<1 km2), however, habitat factors and species distributions show comparable spatial aggregation, making it difficult to disentangle the importance of niche and dispersal processes. In this article, we test soil resource-based niche assembly at a local scale, using species and soil nutrient distributions obtained at high spatial resolution in three diverse neotropical forest plots in Colombia (La Planada), Ecuador (Yasuni), and Panama (Barro Colorado Island). Using spatial distribution maps of >0.5 million individual trees of 1,400 species and 10 essential plant nutrients, we used Monte Carlo simulations of species distributions to test plant-soil associations against null expectations based on dispersal assembly. We found that the spatial distributions of 36-51% of tree species at these sites show strong associations to soil nutrient distributions. Neutral dispersal assembly cannot account for these plant-soil associations or the observed niche breadths of these species. These results indicate that belowground resource availability plays an important role in the assembly of tropical tree communities at local scales and provide the basis for future investigations on the mechanisms of resource competition among tropical tree species. ?? 2007 by The National Academy of Sciences of the USA.

Proceedings of the National Academy of Sciences of↗

Equation-free modeling unravels the behavior of complex ecological systems

Ye et al. (1) address a critical problem confronting the management of natural ecosystems: How can we make forecasts of possible future changes in populations to help guide management actions? This problem is especially acute for marine and anadromous fisheries, where the large interannual fluctuations of populations, arising from complex nonlinear interactions among species and with varying environmental factors, have defied prediction over even short time scales. The empirical dynamic modeling (EDM) described in Ye et al.&rsquo;s report, the latest in a series of papers by Sugihara and his colleagues, offers a promising quantitative approach to building models using time series to successfully project dynamics into the future. With the term &ldquo;equation-free&rdquo; in the article title, Ye et al. (1) are suggesting broader implications of their approach, considering the centrality of equations in modern science. From the 1700s on, nature has been increasingly described by mathematical equations, with differential or difference equations forming the basic framework for describing dynamics. The use of mathematical equations for ecological systems came much later, pioneered by Lotka and Volterra, who showed that population cycles might be described in terms of simple coupled nonlinear differential equations. It took decades for Lotka&ndash;Volterra-type models to become established, but the development of appropriate differential equations is now routine in modeling ecological dynamics. There is no question that the injection of mathematical equations, by forcing &ldquo;clarity and precision into conjecture&rdquo; (2), has led to increased understanding of population and community dynamics. As in science in general, in ecology equations are a key method of communication and of framing hypotheses. These equations serve as compact representations of an enormous amount of empirical data and can be analyzed by the powerful methods of mathematics.

PNAS↗

Simulation testing of unbiasedness of variance estimators

In this article I address the evaluation of estimators of variance for parameter estimates. Given an unbiased estimator X of a parameter θ, and an estimator V of the variance of X , how does one test (via simulation) whether V is an unbiased estimator of the variance of X? The derivation of the test statistic illustrates the need for care in substituting consistent estimators for unknown parameters.

American Statistician↗

Using geometrical, textural, and contextual information of land parcels for classification of detailed urban land use

Detailed urban land use data are important to government officials, researchers, and businesspeople for a variety of purposes. This article presents an approach to classifying detailed urban land use based on geometrical, textural, and contextual information of land parcels. An area of 6 by 14 km in Austin, Texas, with land parcel boundaries delineated by the Travis Central Appraisal District of Travis County, Texas, is tested for the approach. We derive fifty parcel attributes from relevant geographic information system (GIS) and remote sensing data and use them to discriminate among nine urban land uses: single family, multifamily, commercial, office, industrial, civic, open space, transportation, and undeveloped. Half of the 33,025 parcels in the study area are used as training data for land use classification and the other half are used as testing data for accuracy assessment. The best result with a decision tree classification algorithm has an overall accuracy of 96 percent and a kappa coefficient of 0.78, and two naive, baseline models based on the majority rule and the spatial autocorrelation rule have overall accuracy of 89 percent and 79 percent, respectively. The algorithm is relatively good at classifying single-family, multifamily, commercial, open space, and undeveloped land uses and relatively poor at classifying office, industrial, civic, and transportation land uses. The most important attributes for land use classification are the geometrical attributes, particularly those related to building areas. Next are the contextual attributes, particularly those relevant to the spatial relationship between buildings, then the textural attributes, particularly the semivariance texture statistic from 0.61-m resolution images.

Annals of the Association of American Geographers↗

The participatory vulnerability scoping diagram - deliberative risk ranking for community water systems

Natural hazards and climate change present growing challenges to community water system (CWS) managers, who are increasingly turning to vulnerability assessments to identify, prioritize, and adapt to risks. Effectively assessing CWS vulnerability requires information and participation from various sources, one of which is stakeholders. In this article, we present a deliberative risk-ranking methodology, the participatory vulnerability scoping diagram (P-VSD), which allows rapid assessment and integration of multiple stakeholder perspectives of vulnerability. This technique is based on methods of deliberative risk evaluation and the vulnerability scoping diagram. The goal of the methodology is to engage CWS managers and stakeholders collectively to provide qualitative contextual risk rankings as a first step in a vulnerability assessment. We conduct an initial assessment using a case study of CWS in two U.S. counties, sites with broadly similar exposures but differences in population, land use, and other social sensitivity factors. Results demonstrate that CWS managers and stakeholders in the two case study communities all share the belief that their CWS are vulnerable to hazards but differ in how this vulnerability manifests itself in terms of the exposure, sensitivity, and adaptive capacity of the system.

Annals of the Association of American Geographers↗

Comment on ‘New insights on Franciscan Complex geology, architecture, depositional age, and provenance for the western Mt. Tamalpais area, Marin County, California’ by Bero et al. (2020)

Serious errors and inconsistencies in the article undermine many of its interpretations to the point that principal conclusions are not valid. Much dependence is placed on the maximum depositional age (Dmax) of sandstone units based on zircon analysis of 10 samples, but calculation of those Dmax values is flawed, and their use confuses maximum with actual depositional ages and makes age distinctions finer than the resolution of the data. Conclusions that are compromised include the concept of a westward/downward-younging tectonostratigraphic stack of accretionary units, comparison of mapped sandstones with other California Coast Ranges sandstones, comparison of timing of events recorded in the map area with regional events, identification of mélange only in a narrow band in the study area, and detrital provenance of some of the sandstone units.

California↗

Oahu: perspective from space

Satellite remote sensing provides us with a unique perspective from space. This perspective is synoptic in nature and provides regional views of most of the land areas of the earth. The orbital characteristics of the Landsat system are such that repetitive imagery of the same area may be obtained. Because of the permanent nature of the imagery, it may be retrieved for comparative analysis at any time. Comparisons of this image of Oahu with maps of the island (for example, the Oahu, Hawaii, 1:250,000-scale topographic map) will enable the reader to readily identify the place names discussed in this article and permit a more detailed interpretation of the image.

Hawaii↗

Incorporating GIS building data and census housing statistics for sub-block-level population estimation

This article presents a deterministic model for sub-block-level population estimation based on the total building volumes derived from geographic information system (GIS) building data and three census block-level housing statistics. To assess the model, we generated artificial blocks by aggregating census block areas and calculating the respective housing statistics. We then applied the model to estimate populations for sub-artificial-block areas and assessed the estimates with census populations of the areas. Our analyses indicate that the average percent error of population estimation for sub-artificial-block areas is comparable to those for sub-census-block areas of the same size relative to associated blocks. The smaller the sub-block-level areas, the higher the population estimation errors. For example, the average percent error for residential areas is approximately 0.11 percent for 100 percent block areas and 35 percent for 5 percent block areas.

Professional Geographer↗

Celestine-bearing geodes from Wayne and Emery counties, southeastern Utah: Genesis and mineralogy

Geodes containing celestine with associated quartz, calcite, chlorite, and other minerals occur in the Jurassic Curtis Formation of Emery and Wayne counties off the east and south flanks of the San Rafael Swell in southeastern Utah. The two areas discussed in this article produce geodes to 25 cm wide containing bladed to tabular celestine crystals that are as much as 4.5 cm in length. An evaporative littoral system resulting in the formation of anhydrite nodules is proposed as the initial environment for this deposit. Subsequent silicification of the nodules and, in some cases, the formation of hollow spaces within the silicified nodules, provided a geode structure for the eventual crystallization of celestine and associated minerals.

Utah↗

The utility of estimating net primary productivity over Alaska using baseline AVHRR data

Net primary productivity (NPP) is a fundamental ecological variable that provides information about the health and status of vegetation communities. The Normalized Difference Vegetation Index, or NDVI, derived from the Advanced Very High Resolution Radiometer (AVHRR) is increasingly being used to model or predict NPP, especially over large remote areas. In this article, seven seasonally based metrics calculated from a seven-year baseline NDVI dataset were used to model NPP over Alaska, USA. For each growing season, they included maximum, mean and summed NDVI, total days, product of total days and maximum NDVI, an integral estimate of NDVI and a summed product of NDVI and solar radiation. Field (plot) derived NPP estimates were assigned to 18 land cover classes from an Alaskan statewide land cover database. Linear relationships between NPP and each NDVI metric were analysed at four scales: plot, 1-km, 10-km and 20-km pixels. Results show moderate to poor relationship between any of the metrics and NPP estimates for all data sets and scales. Use of NDVI for estimating NPP may be possible, but caution is required due to data seasonality, the scaling process used and land surface heterogeneity.

Alaska↗

Field calibration and validation of remote-sensing surveys

The Optical Collection Suite (OCS) is a ground-truth sampling system designed to perform in situ measurements that help calibrate and validate optical remote-sensing and swath-sonar surveys for mapping and monitoring coastal ecosystems and ocean planning. The OCS system enables researchers to collect underwater imagery with real-time feedback, measure the spectral response, and quantify the water clarity with simple and relatively inexpensive instruments that can be hand-deployed from a small vessel. This article reviews the design and performance of the system, based on operational and logistical considerations, as well as the data requirements to support a number of coastal science and management projects. The OCS system has been operational since 2009 and has been used in several ground-truth missions that overlapped with airborne lidar bathymetry (ALB), hyperspectral imagery (HSI), and swath-sonar bathymetric surveys in the Gulf of Maine, southwest Alaska, and the US Virgin Islands (USVI). Research projects that have used the system include a comparison of backscatter intensity derived from acoustic (multibeam/interferometric sonars) versus active optical (ALB) sensors, ALB bottom detection, and seafloor characterization using HSI and ALB.

Alaska↗

Deep learning approaches on Landsat observations: A review and meta-analysis

Although multiple summary reviews of deep learning in remote sensing have been conducted, the field currently lacks a comprehensive analysis of deep learning utilizing Landsat observations in single time pixel-based classification, both qualitatively and quantitatively. This study addresses this gap by conducting a systematic review based on 352 case studies extracted from 279 peer-reviewed articles that supported direct comparisons across deep learning and traditional classifiers. Qualitatively, our findings are as follows: (i) Two dimensional Convolutional Neural Networks (CNNs) remain the dominant methods; however, exploring other architectures is becoming a growing trend. (ii) Most studies focused on single countries (e.g., China, USA, and India) and the last decade, (iii) Sentinel-2 are the most commonly fused sensors, and vegetation indices are the most commonly used spectral indices. The quantitative meta-analysis revealed that Deep Neural Networks (DNNs) offer an approximate 5% improvement for non-DNN accuracy of 80%, with potentially higher improvements for more challenging tasks. By contrasting between popular DNN methods, UNets achieve higher overall accuracy (OA) than CNNs (approximately 10% UNet improvement when CNN OA is at 80%). However, UNets are more challenging to implement because they require labels for large contiguous reference patches, while CNNs, at least at 30m Landsat pixel, pose lower spatial requirements. In another comparison, Transformers achieve higher OA than CNNs (approximately 5% Transformer improvement when CNN OA is at 80%), although the accuracy improvements are smaller compared to the increases associated with UNet benefits. With greater flexibility and more standardized architecture, Transformers can potentially simplify the design process of models. However, Transformers also face challenges having higher computational resource and memory requirements. Increasing availability of reference datasets, further algorithmic developments in the machine learning field, and improvements in cloud-based computing power and data storage, could increase the utility of deep learning methods on Landsat observations.

International Journal of Remote Sensing↗

Basis function models for animal movement

Advances in satellite-based data collection techniques have served as a catalyst for new statistical methodology to analyze these data. In wildlife ecological studies, satellite-based data and methodology have provided a wealth of information about animal space use and the investigation of individual-based animal–environment relationships. With the technology for data collection improving dramatically over time, we are left with massive archives of historical animal telemetry data of varying quality. While many contemporary statistical approaches for inferring movement behavior are specified in discrete time, we develop a flexible continuous-time stochastic integral equation framework that is amenable to reduced-rank second-order covariance parameterizations. We demonstrate how the associated first-order basis functions can be constructed to mimic behavioral characteristics in realistic trajectory processes using telemetry data from mule deer and mountain lion individuals in western North America. Our approach is parallelizable and provides inference for heterogenous trajectories using nonstationary spatial modeling techniques that are feasible for large telemetry datasets. Supplementary materials for this article are available online.

Journal of the American Statistical Association↗

Morphology, ecology and biogeography of Stauroneis pachycephala P.T. Cleve (Bacillariophyta) and its transfer to the genus Envekadea

Stauroneis pachycephala was described in 1881 from the Baakens River, Port Elizabeth, South Africa. Recently, it was found during surveys of the MacKenzie River (Victoria, Australia), the Florida Everglades (USA) and coastal marshes of Louisiana (USA). The morphology, ecology and geographic distribution of this species are described in this article. This naviculoid species is characterised by lanceolate valves with a gibbous centre, a sigmoid raphe, an axial area narrowing toward the valve ends, and capitate valve apices. The central area is a distinct stauros that is slightly widened near the valve margin. The raphe is straight and filiform, and the terminal raphe fissures are strongly deflected in opposite directions. Striae are fine and radiate in the middle of the valve, becoming parallel and eventually convergent toward the valve ends. The external surface of the valves and copulae is smooth and lacks ornamentation. We also examined the type material of S. pachycephala . Our observations show this species has morphological characteristics that fit within the genus Envekadea. Therefore, the transfer of S. pachycephala to Envekadea is proposed and a lectotype is designated.

Florida;Louisiana;Victoria↗

Status and conservation of interior Redband Trout in the western United States

In this article we describe the current status and conservation of interior (potamodromous) Redband Trout Oncorhynchus mykiss sspp. throughout its range in the western United States using extant data and expert opinion provided by fish managers. Redband Trout historically occupied 60,295 km of stream habitat and 152 natural lakes. Currently, Redband Trout occupy 25,417 km of stream habitat (42% of their historical range) and 124 lakes or reservoirs. Nonhybridized populations are assumed to occupy 11,695 km (46%) of currently occupied streams; however, fish from only 4,473 km (18%) have been genetically tested. Approximately 47% of the streams occupied by Redband Trout occur on private land, 45% on government lands, and 8% in protected areas. A total of 210 Redband Trout populations, occupying 15,252 km of stream habitat (60% of the current distribution) and 95,158 ha of lake habitat (52%), are being managed as &ldquo;conservation populations.&rdquo; Most conservation populations have been designated as weakly to strongly connected metapopulations (125; 60%) and occupy much more stream length (14,112 km; 93%) than isolated conservation populations (1,141 km; 7%). The primary threats to Redband Trout include invasive species, habitat degradation and fragmentation, and climate change. Although the historical distribution of interior Redband Trout has declined dramatically, we conclude that the species is not currently at imminent risk of extinction because it is still widely distributed with many populations isolated by physical barriers and active conservation efforts are occurring for many populations. However, the hybridization status of many populations has not been well quantified, and introgression may be more prevalent than documented here. We recommend (1) collecting additional genetic data and estimating distribution and abundance by means of a more rigorous spatial sampling design to reduce uncertainties, (2) collecting additional information to assess and predict the impacts of climate on populations, and (3) continuing to use this database to evaluate the status of Redband Trout and inform conservation efforts through time.

North American Journal of Fisheries Management↗

Apparent discrepancies in the review “Avian host range of Chlamydophila spp. based on isolation, antigen detection and serology” by Kaleta, E.F. & Taday, E.M.A. (2003), Avian Pathology, 32, 435–462

Citing published reports and their own diagnostic data, Kaleta and Taday ( Citation 2003 ) ( https://doi.org/10.1080/03079450310001593613 ) reported that 469 domestic and free-living bird species were determined to be chlamydia-positive, based on isolation of the organism and antigen detection or on serological detection of circulating antibodies. However, I was unable to reconcile the designation of chlamydia-positive in some of the species listed by Kaleta and Taday ( Citation 2003 ) with the information provided in the corresponding references cited. For example, Eddie et al . ( Citation 1966 ) tested sera from 24 species of birds in Alaska (see their Table 1 ) by “direct and indirect complement fixation techniques in the presence of the standard psittacosis antigen.” Eddie et al . ( Citation 1966 ) reported that serum samples from only two species reacted, and the authors considered those titres too low to be of diagnostic significance. However, Kaleta and Taday ( Citation 2003 ) listed 20 bird species from Eddie et al . ( Citation 1966 ) as being positive for chlamydia. Additional apparent discrepancies are listed in Table 1 of the current article.

Avian Pathology↗