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USGS2019

Erratics and other evidence of late Wisconsin Missoula outburst floods in lower Wenatchee and Columbia valleys, Washington

The Pleistocene Missoula floods through eastern and central Washington are by peak flow rate (discharge) the greatest freshwater cataclysms known on Earth. Newly explored features along the Wenatchee reach of Columbia valley give new evidence and revise earlier interpretations of size, frequency, and routing of megafloods. Crystalline-rock erratics derived far northeast lie scattered about the sandstone hills of lower Wenatchee valley and adjacent Columbia valley up to 495 m altitude, 320 m above Columbia River. They can only have been ice-rafted by flood(s) running down the Columbia. Before the late Wisconsin Okanogan lobe of Cordilleran ice blocked the Columbia, at least one monstrous Missoula flood poured down the valley past Wenatchee and backflooded Wenatchee valley. Rhythmically bedded sandy silt in Columbia valley between Trinidad and Wenatchee records repeated silt-rich backfloods up the Columbia from Quincy basin—after Okanogan-lobe ice had blocked the Columbia upvalley. Rhythmically graded silt beds in Wenatchee valley at Dryden containing Columbia-derived dropstones record ten Missoula backfloods up the valley. Thick silt farther up Wenatchee valley between Peshastin and Leavenworth had been thought deposits of a long-lived lake, dammed supposedly by the Malaga landslide. But the heights and distribution of provable lake beds now make Moses Coulee bar the only viable dam—and only up to altitude 275 m. The silt above Dryden lying at 315–385 m altitude must also have been laid by Missoula floods.

Washington↗

USGS2011

The distribution and abundance ofa nuisance native alga, Didymosphenia geminata,in streams of Glacier National Park: Climate drivers and management implications

Didymosphenia geminata (didymo) is a freshwater alga native to North America, including Glacier National Park, Montana. It has long been considered a cold-water species, but has recently spread to lower latitudes and warmer waters, and increasingly forms large blooms that cover streambeds. We used a comprehensive monitoring data set from the National Park Service (NPS) and USGS models of stream temperatures to explore the drivers of didymo abundance in Glacier National Park. We estimate that approximately 64% of the stream length in the park contains didymo, with around 5% in a bloom state. Results suggest that didymo abundance likely increased over the study period (2007–2009), with blooms becoming more common. Our models suggest that didymo abundance is positively related to summer stream temperatures and negatively related to total nitrogen and the distance downstream from lakes. Regional climate model simulations indicate that stream temperatures in the park will likely continue to increase over the coming decades, which may increase the extent and severity of didymo blooms. As a result, didymo may be a useful indicator of thermal and hydrological modification associated with climate warming, especially in a relatively pristine system like Glacier where proximate human-related disturbances are absent or reduced. Glacier National Park plays an important role as a sentinel for climate change and associated education across the Rocky Mountain region.

Montana↗

USGS2026

Hydrologic variability drives environmental and geospatial relationships in Smallmouth Bass (Micropterus dolomieu) distribution

Hydrologic variation is a primary driver of stream ecosystems. Changing hydrology can lead to assemblage shifts and alterations in suitable habitat for freshwater species. As climate change is predicted to alter flow patterns in addition to increasing water temperatures, insight into relationships between species occupancy, hydrology, and temperature is critical for understanding current and future distributions. We examined how hydrologic variability, temperature, and other environmental variables interact to influence Micropterus dolomieu (Smallmouth Bass) occurrence. We used Spatial Stream Network models, allowing for the incorporation of spatial autocorrelation along streams' unique dendritic network, to examine Smallmouth Bass occupancy across a range of hydrologic variation in the Ozark-Ouachita Interior Highlands, USA. Hydrologic variation was the main driver of Smallmouth Bass occurrence, with occurrence more likely in groundwater streams with low hydrologic variation and high flow permanence. For groundwater streams, occurrence was positively associated with summer stream temperature and negatively associated with annual stream temperature. As variation increased, more variables showed significant relationships with occurrence. Distance metrics were important for all models, however as hydrologic disturbance increased, flow connected distance played a lesser role and stream distance played a greater role. Hydrologic variability was the overarching determinant of Smallmouth Bass occurrence and strongly influenced the predictive importance of environmental variables and geospatial relationships. Greater hydrologic variability resulted in stronger statistical relationships between occurrence and environmental variables and an increased importance of system connectivity. As climate change alters hydrologic processes and streams become more variable, understanding and accounting for these shifting relationships is essential.

Arkansas, Kansas, Missouri, Oklahoma↗

USGS2006

Precessional forcing of lacustrine sedimentation in the late Cenozoic Chemeron Basin, Central Kenya Rift, and calibration of the Gauss/Matuyama boundary

The fluviolacustrine sedimentary sequence of the Chemeron Formation exposed in the Barsemoi River drainage, Tugen Hills, Kenya, contains a package of five successive diatomite/fluvial cycles that record the periodic development of freshwater lakes within the axial portion of the Central Kenya Rift. The overwhelming abundance in the diatomite of planktonic species of the genera Aulacoseira and Stephanodiscus, and the virtual absence of benthic littoral diatoms and detrital material indicate areally extensive, deep lake systems. A paleomagnetic reversal stratigraphy has been determined and chronostratigraphic tie points established by 40Ar/39Ar dating of intercalated tuffs. The sequence spans the interval 3.1-2.35??Ma and bears a detailed record of the Gauss/Matuyama paleomagnetic transition. The 40Ar/39Ar age for this boundary of 2.589 ?? 0.003??Ma can be adjusted to concordance with the Astronomical Polarity Time Scale (APTS) on the basis of an independent calibration to 2.610??Ma, 29??kyr older than the previous APTS age. The diatomites recur at an orbital precessional interval of 23??kyr and are centered on a 400-kyr eccentricity maximum. It is concluded that these diatomite/fluvial cycles reflect a narrow interval of orbitally forced wet/dry climatic conditions that may be expressed regionally across East Africa. The timing of the lacustrine pulses relative to predicted insolation models favors origination of moisture from the northern Africa monsoon, rather than local circulation driven by direct equatorial insolation. This moisture event at 2.7-2.55??Ma, and later East African episodes at 1.9-1.7 and 1.1-0.9??Ma, are approximately coincident with major global climatic and oceanographic events. ?? 2006 Elsevier B.V. All rights reserved.

Earth and Planetary Science Letters↗

USGS1999

Correlation of soil and sediment organic matter polarity to aqueous sorption of nonionic compounds

Polarities of the soiL/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment sam pies were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (K(oc)) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct assessment of the polarity of SOM that is not possible by elemental analysis. The percent of organic carbon associated with polar functional groups was estimated from the combined fraction of carbohydrate and carboxylamide-ester carbons. A plot of the measured partition coefficients (K(oc)) of carbon tetrachloride (CT) vs. percent polar organic carbon (POC) shows distinctly different populations of soils and sediments as well as a roughly inverse trend among the soil/sediment populations. Plots of K(oc) values for CT against other structural group carbon fractions did not yield distinct populations. The results indicate that the polarity of SOM is a significant factor in accounting for differences in K(oc) between the organic matter in soils and sediments. The alternate direct correlation of the sum of aliphatic and aromatic structural carbons with K(oc) illustrates the influence of nonpolar hydrocarbon on solute partition interaction. Additional elemental analysis data of selected samples further substantiate the effect of the organic matter polarity on the partition efficiency of nonpolar solutes. The separation between soil and sediment samples based on percent POC reflects definite differences of the properties of soil and sediment organic matters that are attributable to diagenesis.Polarities of the soil/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment samples were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (Koc) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct assessment of the polarity of SOM that is not possible by elemental analysis. The percent of organic carbon associated with polar functional groups was estimated from the combined fraction of carbohydrate and carboxyl-amide-ester carbons. A plot of the measured partition coefficients (Koc) of carbon tetrachloride (CT) vs. percent polar organic carbon (POC) shows distinctly different populations of soils and sediments as well as a roughly inverse trend among the soil/sediment populations. Plots of Koc values for CT against other structural group carbon fractions did not yield distinct populations. The results indicate that the polarity of SOM is a significant factor in accounting for differences in Koc between the organic matter in soils and sediments. The alternate direct correlation of the sum of aliphatic and aromatic structural carbons with Koc illustrates the influence of nonpolar hydrocarbon on solute partition interaction. Additional elemental analysis data of selected samples further substantiate the effect of the organic matter polarity on the partition efficiency of nonpolar solutes. The separation between soil and sediment samples based on percent POC reflects definite differences of the properties of soil and sediment organic matters that are attributable to diagenesis.

Environmental Science & Technology↗

USGS2021

Emerging dominance of Paratrochammina simplissima (Cushman and McCulloch) in the northern Gulf of Mexico following hydrologic and geomorphic changes

Grand Bay estuary in coastal Mississippi and Alabama (USA) has undergone significant geomorphic changes over the last few centuries as a result of anthropogenic (bridge, road, and hardened shoreline construction) and climatic (extreme storm events) processes, which reduce freshwater input, sediment supply, and degrade barrier islands. To investigate how geomorphic changes may have altered the Grand Bay estuary, sediment push cores were collected for foraminiferal, sedimentological (organic matter content, grain-size distribution), and radiochemical ( 210 Pb, 137 Cs, and 7 Be) analyses. Clay normalized geochronologies were determined with a constant rate of supply model. Based on downcore age-depth relationships, select intervals were analyzed for foraminifera in order to assess alterations in the microfossil assemblage in Grand Bay estuary over the 20th Century. All estuarine samples were low diversity (species richness: 1–10; Fisher's alpha diversity: 0.14–1.75); two species, Ammotium salsum and Paratrochammina simplissima, dominated all downcore assemblages. Paratrochammina simplissima increased in abundance up-core from a minor subsidiary species (median = 4.7% at 19–20 cm) to dominant or co-dominant with A. salsum over the 20th and early 21st Centuries in six cores, comprising up to 60.7% of a single sample. The emerging dominance of P. simplissima since ~1950 along with the reduction of brackish-estuarine taxa and introduction of calcareous species signifies increased salinity and less marsh organic matter preserved in the sediments. While seasonal dissolution limits our ability to chronologically constrain the introduction of calcareous species, P. simplissima , a species not referenced in taxonomic data from the northern Gulf of Mexico until 2012, is well constrained, following its first occurrence in the 1930s.

Mississippi↗

USGS2020

History and evolution of seepage meters for quantifying flow between groundwater and surface water: Part 1 – Freshwater settings

More than 75 years after its introduction, the seepage meter remains the only device for directly quantifying exchange across the sediment-water interface between groundwater and surface water. This device, first presented in the literature in the 1940s, has been in a state of near-constant improvement and design change, necessitating a review of the history and evolution of the device and a description of current best-measurement practices. Part 1 of this two-part review documents the evolution of seepage meters deployed in freshwater settings, including a listing of suggestions for best-measurement and deployment practices. Part 2 covers the same scope for seepage meters deployed in marine settings. Traditional seepage meters isolate a portion of the sediment bed; seepage commonly is determined by routing the volume of flow across that isolated interface to or from a submerged measurement bag over a known time interval. The time-integrated volume is then divided by the bed area covered by the meter to obtain a seepage flux expressed in distance per time. Both the instrument and the measurement are deceptively simple, leading some early users to question the viability of the measurement. Numerous sources of error have been identified and addressed over the decades, resulting in large improvements in measurement consistency and accuracy. Duration of each measurement depends on the seepage rate and can vary from minutes to days, leading to the erroneous and yet common assumption that seepage is relatively stable over time. Designs that replace the measurement bag with a flowmeter eliminate bag-related errors and provide much finer temporal resolution. Resulting data indicate seepage is highly variable in many settings and responds to numerous sub-daily processes, including evapotranspiration, rainfall, seiches and waves. Combining direct measurements from seepage meters with other measurements, such as vertical hydraulic gradients and vertical temperature profiles, provides far better understanding of the processes that control exchange between groundwater and surface water.

Earth-Science Reviews↗

USGS2023

A numerical investigation of the mechanisms controlling salt intrusion in the Delaware Bay Estuary

Salinity intrusion in coastal systems is mainly controlled by freshwater inflows. However, extreme events like drought, low-pressure storms, and longer-term sea level rise can exacerbate the landward salt migration and threaten economic infrastructure and ecological health. Along the eastern seaboard of the United States, approximately 13 million people rely on the water resources of the Delaware River basin. Salinity intrusion is actively managed through river discharge targets to suppress the propagation of the salt front (∼0.52 daily averaged psu line). The purpose of this study is to examine the mechanisms controlling the location of the salt front in the Delaware Bay estuary using a calibrated three-dimensional hydrodynamic model, the Coupled Ocean Atmosphere Wave and Sediment Transport modeling system. This study explored how river discharge, tidal motions, interactions with bathymetric and topographic features, and meteorological events affected the location of the salt front. The model was forced with tides, subtidal water levels, bulk atmospheric conditions, and waves. Compared with the observationally derived location of the salt front line, the model captured the major dynamics throughout the year and performed particularly well during times of low discharge, when salinity intruded up estuary at a constant rate of 0.4 km /day . The daily average salt front moved almost 16 km (10 mi) within a neap-spring tidal cycle, and low-pressure storm systems were found to move the daily averaged salt front by 13–16 km in one event.

Delaware, New Jersey, Pennsylvania↗

USGS2017

Archive of bathymetry data collected in South Florida from 1995 to 2015

Description Land development and alterations of the ecosystem in south Florida over the past 100 years have decreased freshwater and increased nutrient flows into many of Florida's estuaries, bays, and coastal regions. As a result, there has been a decrease in the water quality in many of these critical habitats, often prompting seagrass die-offs and reduced fish and aquatic life populations. Restoration of water quality in many of these habitats will depend partly upon using numerical-circulation and sediment-transport models to establish water-quality targets and to assess progress toward reaching restoration targets. Application of these models is often complicated because of complex sea floor topography and tidal flow regimes. Consequently, accurate and modern sea-floor or bathymetry maps are critical for numerical modeling research. Modern bathymetry data sets will also permit a comparison to historical data in order to help assess sea-floor changes within these critical habitats. New and detailed data sets also support marine biology studies to help understand migratory and feeding habitats of marine life. This data series is a compilation of 13 mapping projects conducted in south Florida between 1995 and 2015 and archives more than 45 million bathymetric soundings. Data were collected primarily with a single beam sound navigation and ranging (sonar) system called SANDS developed by the U.S. Geological Survey (USGS) in 1993. Bathymetry data for the Estero Bay project were supplemented with the National Aeronautics and Space Administration's (NASA) Experimental Advanced Airborne Research Lidar (EAARL) system. Data from eight rivers in southwest Florida were collected with an interferometric swath bathymetry system. The projects represented in this data series were funded by the USGS Coastal and Marine Geology Program (CMGP), the USGS South Florida Ecosystem Restoration Project- formally named Placed Based Studies, and other non-Federal agencies. The purpose of the data collection for all these projects was to support one or more of the following scientific aspects: numerical model applications, sea floor change analysis, or marine habitat investigations. This report serves as an archive of processed bathymetry sounding data, digital bathymetric contours, digital bathymetric maps, sea floor surface grids, and formal Federal Geographic Data Committee (FGDC) metadata. Refer to the Abbreviations page for explanations of acronyms and abbreviations used in this report. Since 2006, the USGS St. Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier or Field Activity Number (FAN) for each field data collection. Projects described in this report conducted prior to 2006 do not have a FAN. Data from the 13 projects presented in this report provided critical hydrographic information to support multiple science projects in south Florida. The projects and the types of sounding data collected are: Florida Bay (1995-1999) - single-beam Lake Okeechobee (2001) - single-beam Tampa Bay (2001-2004) - single-beam Caloosahatchee River (2002)- single-beam Estero Bay to Matlacha Pass and offshore to Wiggins Pass (2003) - single-beam and airborne lidar North and Northwest Forks of the Loxahatchee and Lower St. Lucie Rivers (2003) - single-beam South Charlotte Harbor and offshore Sanibel Island (2003-2004) - single-beam Shark River and Trout Creek (2004) - single-beam and interferometric swath Southwest Florida Rivers (2004) - interferometric swath Offshore from Wiggins Pass to Cape Romano (2005) - single-beam Ten Thousand Islands (2009) - single-beam Lemon Bay (2011) - single-beam Southwest Florida Rivers (2015) - interferometric swath

Florida↗

USGS2021

Comparative effects of energy-related saline wastewaters and sodium chloride on hatching, survival, and fitness-associated traits of two amphibian species

Salinity (sodium chloride [NaCl]) is a prevalent and persistent contaminant that negatively affects freshwater ecosystems. Although most studies focus on effects of salinity from road salts (primarily NaCl), high-salinity wastewaters from energy extraction (wastewaters) could be more harmful because they contain NaCl and other toxic components. Many amphibians are sensitive to salinity, and their eggs are thought to be the most sensitive life-history stage. However, there are few investigations with salinity that include eggs and larvae sequentially in long-term exposures. We investigated the relative effects of wastewaters from a large energy reserve, the Williston Basin (USA), and NaCl on northern leopard ( Rana pipiens ) and boreal chorus ( Pseudacris maculata ) frogs. We exposed eggs and tracked responses through larval stages (for 24 days). Wastewaters and NaCl caused similar reductions in hatching and larval survival, growth, development, and activity, while also increasing deformities. Chorus frog eggs and larvae were more sensitive to salinity than leopard frogs, suggesting species-specific responses. Contrary to previous studies, eggs of both species were less sensitive to salinity than larvae. Our ecologically relevant exposures suggest that accumulating effects can reduce survival relative to starting experiments with unexposed larvae. Alternatively, egg casings of some species may provide some protection against salinity. Notably, effects of wastewaters on amphibians were predominantly due to NaCl rather than other components. Therefore, findings from studies with other sources of increased salinity (e.g., road salts) could guide management of wastewater-contaminated ecosystems, and vice versa, to mitigate effects of salinization.

Montana, Wyoming↗

USGS2021

Activity patterns of anadromous fish below a tide gate: Observations from high‐resolution imaging sonar

The construction of dams and tide gates on waterways has altered the physical structure of many coastal, estuarine, and freshwater systems. These changes have come at a cost to fish populations, most notably diadromous species, which rely on connectivity between marine and freshwater systems. These anthropogenic structures can have direct effects on migrating fish, such as blocking fish passage, or have more subtle effects, such as changing movement patterns. This study used a high‐resolution Adaptive Resolution Imaging Sonar to examine the behavior of Striped Bass Morone saxatilis , a large coastal predator, and Alewife Alosa pseudoharengus and Blueback Herring Alosa aestivalis (collectively known as river herring), which are forage fish, below a tide gate structure on the Herring River in Wellfleet, Massachusetts, during the river herring spring spawning run. Striped Bass were persistently present downstream of the tide gate and exhibited strong diurnal and tidal patterns. Activity of Striped Bass was highest at night and during ebb tides. During peak outflow periods, river herring were observed milling downstream of the dam in a scour pool, indicating delayed upstream passage. River herring upstream migration was primarily associated with daytime and during incoming tides. Downstream‐migrating river herring were primarily observed during nighttime hours. While it was documented that the tide gates provided a physical impediment to migration, their effect on predator behavior could pose an additional challenge to migrating river herring, further complicating their recovery efforts. Due to the prevalence of obstructed waterways, studying the behavior of fish around anthropogenic structures is important in understanding the full range of impacts that these systems have under varying ecological conditions and on ecological relationships.

Massachusetts↗

USGS2016

Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a &sim;1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last &sim;150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last &sim;500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services.

Lake Tanganyika, Mahale Mountains National Park↗

USGS2019

Vertical distribution of microplastics in the water column and surficial sediment from the Milwaukee River basin to Lake Michigan

Microplastic contamination was studied along a freshwater continuum from inland streams to the Milwaukee River estuary to Lake Michigan, and vertically from the water surface, water subsurface and sediment. Microplastics were detected in all 96 water samples and nine sediment samples collected. Results indicated a gradient of polymer presence with depth: low-density particles decreased from water surface to subsurface to sediment, and high-density particles had the opposite result. Polymer identification results indicated water surface and subsurface samples were dominated by low-density polypropylene particles and sediment samples were dominated by more dense polyethylene terephthalate particles. Of the five particle-type categories (fragments, films, foams, pellets/beads and fibers/lines), fibers/lines were the most common particle type and were present in every water and sediment sample collected. Fibers represented 45% of all particles in water samples and were distributed vertically throughout the water column regardless of density. Sediment samples were dominated by black foams (66%, identified as styrene-butadiene rubber, SBR) and to a lesser extent fibers/lines (29%) with approximately 89% of all the sediment particles coming from polymers with densities greater than 1.1 g cm-3. Results demonstrated polymer density influenced partitioning between water surface and subsurface and the underlying surficial sediment and the common practice of sampling only the water surface can result in substantial bias, especially in estuarine, harbor and lake locations where water surface concentrations tend to overestimate mean water column concentrations.

Wisconsin↗

USGS2018

Zooplankton dynamics in the Cache Slough complex of the upper San Francisco Estuary

We studied abundance and dynamics of zooplankton in the tidal freshwater Cache Slough Complex (CSC) in the northern Delta of the San Francisco Estuary during June, July, and October 2015. We asked whether the CSC was an area of high zooplankton production that could act as a source region for open waters of the estuary. Abundance of the copepod Pseudodiaptomus forbesi was similar to that in freshwater reaches of the central and eastern Delta and higher than that in the adjacent Sacramento River. Growth rate of P. forbesi was higher than previously measured in large estuarine channels because of higher temperature and phytoplankton biomass in the CSC. Samples of P. forbesi examined with molecular techniques contained an unexpectedly high proportion of DNA from cyanobacteria and little DNA from more nutritious phytoplankton. We also examined tidal exchanges of phytoplankton biomass and copepods between Liberty Island, a shallow tidal lake within the CSC, and the adjacent southern Cache Slough, which links the CSC to the Sacramento River. We calculated zero net flux of phytoplankton over 127 days between June and October. The tidal flux of copepods, calculated using tidal flow from an in situ flow station and half-hourly sampling over three 24.8-hr tidal cycles, varied a great deal because of temporal patchiness and day/night variation in abundance. Overall, the tidal flux was indistinguishable from zero, while the tidally-averaged water flow (and therefore the net copepod flux) was always into the wetland. Our results show some promise for the CSC as a productive habitat for planktivorous fishes and as a laboratory for learning how to design future wetland restoration. However, we remain cautious about whether wetlands such as the CSC may export large quantities of food organisms that can support fishes in other regions of the estuary.

San Francisco Estuary and Watershed Science↗

USGS2010

Nitrous oxide emission from denitrification in stream and river networks

Nitrous oxide (N 2 O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N 2 O via microbial denitrification that converts N to N 2 O and dinitrogen (N 2 ). The fraction of denitrified N that escapes as N 2 O rather than N 2 (i.e., the N 2 O yield) is an important determinant of how much N 2 O is produced by river networks, but little is known about the N 2 O yield in flowing waters. Here, we present the results of whole-stream 15 N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N 2 O at rates that increase with stream water nitrate (NO 3 − ) concentrations, but that <1% of denitrified N is converted to N 2 O. Unlike some previous studies, we found no relationship between the N 2 O yield and stream water NO 3 − . We suggest that increased stream NO 3 − loading stimulates denitrification and concomitant N 2 O production, but does not increase the N 2 O yield. In our study, most streams were sources of N 2 O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y −1 of anthropogenic N inputs to N 2 O in river networks, equivalent to 10% of the global anthropogenic N 2 O emission rate. This estimate of stream and river N 2 O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change. Humans have more than doubled the availability of fixed nitrogen (N) in the biosphere, particularly through the production of N fertilizers and the cultivation of N-fixing crops ( 1 ). Increasing N availability is producing unintended environmental consequences including enhanced emissions of nitrous oxide (N 2 O), a potent greenhouse gas ( 2 ) and an important cause of stratospheric ozone destruction ( 3 ). The Intergovernmental Panel on Climate Change (IPCC) estimates that the microbial conversion of agriculturally derived N to N 2 O in soils and aquatic ecosystems is the largest source of anthropogenic N 2 O to the atmosphere ( 2 ). The production of N 2 O in agricultural soils has been the focus of intense investigation (i.e., >1,000 published studies) and is a relatively well constrained component of the N 2 O budget ( 4 ). However, emissions of anthropogenic N 2 O from streams, rivers, and estuaries have received much less attention and remain a major source of uncertainty in the global anthropogenic N 2 O budget. Microbial denitrification is a large source of N 2 O emissions in terrestrial and aquatic ecosystems. Most microbial denitrification is a form of anaerobic respiration in which nitrate (NO 3 − , the dominant form of inorganic N) is converted to dinitrogen (N 2 ) and N 2 O gases ( 5 ). The proportion of denitrified NO 3 − that is converted to N 2 O rather than N 2 (hereafter referred to as the N 2 O yield and expressed as the mole ratio) partially controls how much N 2 O is produced via denitrification ( 6 ), but few studies provide information on the N 2 O yield in streams and rivers because of the difficulty of measuring N 2 and N 2 O production in these systems. Here we report rates of N 2 and N 2 O production via denitrification measured using whole-stream 15 NO 3 − -tracer experiments in 72 headwater streams draining different land-use types across the United States. This project, known as the second Lotic Intersite Nitrogen eXperiment (LINX II), provides unique whole-system measurements of the N 2 O yield in streams. Although N 2 O emission rates have been reported for streams and rivers ( 7 , 8 ), the N 2 O yield has been studied mostly in lentic freshwater and marine ecosystems, where it generally ranges between 0.1 and 1.0%, although yields as high as 6% have been observed ( 9 ). These N 2 O yields are low compared with observations in soils (0–100%) ( 10 ), which may be a result of the relatively lower oxygen (O 2 ) availability in the sediments of lakes and estuaries. However, dissolved O 2 in headwater streams is commonly near atmospheric equilibrium and benthic algal biofilms can produce O 2 at the sediment–water interface, resulting in strong redox gradients more akin to those in partially wetted soils. Thus, streams may have variable and often high N 2 O yields, similar to those in soils ( 11 ). The N 2 O yield in headwater streams is of particular interest because much of the NO 3 − input to rivers is derived from groundwater upwelling into headwater streams. Furthermore, headwater streams compose the majority of stream length within a drainage network and have high ratios of bioreactive benthic surface area to water volume ( 12 ).

Proceedings of the National Academy of Sciences of↗

USGS2022

Modeling functional flows in California rivers

Environmental flows are critical to the recovery and conservation of freshwater ecosystems worldwide. However, estimating desired ranges of environmental flows across large, diverse landscapes is challenging. To advance protections of environmental flows for streams in California, USA, we developed a statewide modeling approach focused on functional components of the natural flow regime. Functional flow components in California streams—fall pulse flows, wet season peak flows and base flows, the spring flow recession, and dry season baseflows—support essential physical and ecological processes in riverine ecosystems. These functional flow components can be represented by functional flow metrics (FFMs) and quantified by their magnitude, timing, frequency, duration, and rate-of-change from daily streamflow records. After quantifying FFMs at reference-quality streamflow gages in California, we used machine-learning methods to estimate their natural range of values for all stream reaches in the state based on physical watershed characteristics and climatic factors. We found that the models performed well in predicting FFMs in streams across a diversity of landscape and climate contexts, according to several model performance criteria. Using the predicted FFM values, we established initial estimates of ecological flows that are expected to support critical functions and are broadly protective of ecosystem health. Modeling functional flows statewide offers a pathway for increasing the pace and scale of environmental flow protections in California and beyond.

California↗

USGS2024

Environmental DNA reveals invasion of Puerto Rican waterways by non-native Clarias catfish

The Sharptooth walking catfish ( Clarias gariepinus ) is native to parts of the Middle East, Asia, and Africa but is one of the world's most invasive freshwater fish species. The species’ ability to invade is partly due to its ability to breathe atmospheric oxygen, thereby avoiding hypoxia or poor water quality in receiving waterbodies; further, it can crawl over moist land to disperse to new systems. In 2018, two individuals purported to be Sharptooth walking catfish were collected and identified within the Canal de Patillas, a canal in the Guayama municipality in southeastern Puerto Rico. Several other specimens were also collected the following year. Given that this invasion was in its infancy, environmental DNA (eDNA) surveillance was employed as a rapid and efficient surveillance tool to help delineate the extent of this invasion. Water samples were collected and analyzed for Clarias eDNA from 66 sites encompassing a wide range of habitats in canals, lakes, and a river surrounding the area where they were first reported. Using eDNA-metabarcoding, we detected Clarias eDNA at 40 of the 63 sites throughout the sampled waterbodies. Furthermore, our molecular analysis indicated that the Whitespotted Clarias ( C. fuscus ) is the likely invader, and the original specimens, classified as C. gariepinus , were misidentified based on the use of morphological rather than genetic features for species classification. Environmental DNA surveillance indicated that the distribution of Clarias catfish in this system is substantially more extensive than previously documented. These findings suggest that additional survey efforts could help determine the invasion's full spatial extent and leading edge to inform the scope and scale of any potential management responses.

Puerto Rico↗

USGS2016

Assessing the feasibility of using acoustic monitoring for Burbot conservation, management, and production

Burbot Lota lota is the sole freshwater representative of the cod-like fishes and supports subsistence, commercial, and recreational fisheries worldwide above approximately 40° N. It is a difficult species to manage effectively due to its preference for deep-water habitats and spawning activity under the ice in winter. Like other gadiform fishes, Burbot use acoustic signaling as part of their mating system, and while the acoustic repertoire of the species has been characterized under artificial conditions (i.e., net pen suspended under ice in a natural lake), there has been no work to determine whether the species is as vocal in natural spawning aggregations. Our objective was to assess the feasibility of collecting and using acoustic data to characterize the spawning activity and locations of Burbot under field conditions. We recorded audio and video of Burbot spawning aggregations through holes drilled into the ice at known spawning grounds at Moyie Lake in British Columbia, Canada. Acoustic recordings (call counts and audiograms) were analyzed using Raven Pro v 1. 4 software. Acoustic behavior was also related to video data to determine how acoustic activity correlated to any observed spawning behavior. In general, wild Burbot spawning in Moyie Lake did not vocalize as frequently as counterparts spawning under artificial conditions. Further, Burbot vocalizations were not recorded in conjunction with spawning activity. While it may be feasible to use passive acoustic monitoring to locate Burbot spawning grounds and identify periods of activity, it does not seem to hold much promise for locating and quantifying spawning activity in real time.

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