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At least 559 records · Page 31Linked to original sources
USGS2003

Biorecovery of gold

Recovery of ionic and metallic gold (Au) from a wide variety of solutions by selected species of bacteria, yeasts, fungi, algae, and higher plants is documented. Gold accumulations were up to 7.0 g/kg dry weight (DW) in various species of bacteria, 25.0 g/kg DW in freshwater algae, 84.0 g/kg DW in peat, and 100.0 g/kg DW in dried fungus mixed with keratinous material. Mechanisms of accumulation include oxidation, dissolution, reduction, leaching, and sorption. Uptake patterns are significantly modified by the physicochemical milieu. Crab exoskeletons accumulate up to 4.9 g Au/kg DW; however, gold accumulations in various tissues of living teleosts, decapod crustaceans, and bivalve molluscs are negligible.

Indian Journal of Experimental Biology↗
USGS1979

Potentials and limits for the use of ozone as a fish disease control agent

Ozone and chlorine inactivation curves were determined in three types of freshwater at 20 C for the destruction of the fish pathogens Aeromonas salmonicida the etiologic agent of furunculosis, and Yersinia ruckeri the enteric redmouth bacterium (ERM). Ozone and chlorine inactivation curves were also obtained in the same water types at 10 C for the fish pathogenic viruses infectious hematopoietic necrosis (IHNV), and infectious pancreatic necrosis (IPNV). Acute toxicity tests using the rainbow trout as a representative salmonid revealed that ozone was highly toxic at the dose levels used. Partial chronic (3. mo.) testing revealed that ozone exposure at 2 μg/L causes only minimal physiological changes, none of which would be expected to compromise biological function.

Ozone: Science and Engineering↗
USGS2016

Genetic and phenotypic variation along an ecological gradient in lake trout Salvelinus namaycush

Background Adaptive radiation involving a colonizing phenotype that rapidly evolves into at least one other ecological variant, or ecotype, has been observed in a variety of freshwater fishes in post-glacial environments. However, few studies consider how phenotypic traits vary with regard to neutral genetic partitioning along ecological gradients. Here, we present the first detailed investigation of lake trout Salvelinus namaycush that considers variation as a cline rather than discriminatory among ecotypes. Genetic and phenotypic traits organized along common ecological gradients of water depth and geographic distance provide important insights into diversification processes in a lake with high levels of human disturbance from over-fishing. Results Four putative lake trout ecotypes could not be distinguished using population genetic methods, despite morphological differences. Neutral genetic partitioning in lake trout was stronger along a gradient of water depth, than by locality or ecotype. Contemporary genetic migration patterns were consistent with isolation-by-depth. Historical gene flow patterns indicated colonization from shallow to deep water. Comparison of phenotypic ( Pst ) and neutral genetic variation ( Fst ) revealed that morphological traits related to swimming performance (e.g., buoyancy, pelvic fin length) departed more strongly from neutral expectations along a depth gradient than craniofacial feeding traits. Elevated phenotypic variance with increasing water depth in pelvic fin length indicated possible ongoing character release and diversification. Finally, differences in early growth rate and asymptotic fish length across depth strata may be associated with limiting factors attributable to cold deep-water environments. Conclusion We provide evidence of reductions in gene flow and divergent natural selection associated with water depth in Lake Superior. Such information is relevant for documenting intraspecific biodiversity in the largest freshwater lake in the world for a species that recently lost considerable genetic diversity and is now in recovery. Unknown is whether observed patterns are a result of an early stage of incipient speciation, gene flow-selection equilibrium, or reverse speciation causing formerly divergent ecotypes to collapse into a single gene pool.

Lake Superior, Isle Royale↗
USGS2015

Pollen and spores of terrestrial plants

Pollen and spores are valuable tools in reconstructing past sea level and climate because of their ubiquity, abundance, and durability as well as their reciprocity with source vegetation to environmental change (Cronin, 1999; Traverse, 2007; Willard and Bernhardt, 2011). Pollan is found in many sedimentary environments, from freshwater to saltwater, terrestrial to marine. It can be abundant in a minimal amount of sample material, for example half a gram, as concentrations can be as high as four million grains per gram (Traverse, 2007). The abundance of pollen in a sample lends it to robust statistical analysis for the quantitative reconstruction of environments. The outer cell wall is resistant to decay in sediments and allows palynomorphs (pollen and spores) to record changes in plant communities and sea level over millions of years. These characteristics make pollen and spores a powerful tool to use in sea-level research. This chapter describes the biology of pollen and spores and how they are transported and preserved in sediments. We present a methodology for isolating pollen from sediments and a general language and framework to identify pollen as well as light micrographs of a selection of common pollen grains, We then discuss their utility in sea-level research.

Book chapter↗
USGS2016

Macroinvertebrate and diatom metrics as indicators of water-quality conditions in connected depression wetlands in the Mississippi Alluvial Plain

Methods for assessing wetland conditions must be established so wetlands can be monitored and ecological services can be protected. We evaluated biological indices compiled from macroinvertebrate and diatom metrics developed primarily for streams to assess their ability to indicate water quality in connected depression wetlands. We collected water-quality and biological samples at 24 connected depressions dominated by water tupelo ( Nyssa aquatica ) or bald cypress ( Taxodium distichum ) (water depths = 0.5–1.0 m). Water quality of the least-disturbed connected depressions was characteristic of swamps in the southeastern USA, which tend to have low specific conductance, nutrient concentrations, and pH. We compared 162 macroinvertebrate metrics and 123 diatom metrics with a water-quality disturbance gradient. For most metrics, we evaluated richness, % richness, abundance, and % relative abundance values. Three of the 4 macroinvertebrate metrics that were most beneficial for identifying disturbance in connected depressions decreased along the disturbance gradient even though they normally increase relative to stream disturbance. The negative relationship to disturbance of some taxa (e.g., dipterans, mollusks, and crustaceans) that are considered tolerant in streams suggests that the tolerance scale for some macroinvertebrates can differ markedly between streams and wetlands. Three of the 4 metrics chosen for the diatom index reflected published tolerances or fit the usual perception of metric response to disturbance. Both biological indices may be useful in connected depressions elsewhere in the Mississippi Alluvial Plain Ecoregion and could have application in other wetland types. Given the paradoxical relationship of some macroinvertebrate metrics to dissolved O 2 (DO), we suggest that the diatom metrics may be easier to interpret and defend for wetlands with low DO concentrations in least-disturbed conditions.

Arkansas↗
USGS2021

Use of carbon dioxide to prevent zebra mussel (Dreissena polymorpha) settlement and effects on native mussels (Order Unionoida) and benthic communities

We determined the efficacy of carbon dioxide (CO2) for preventing larval (veliger) settlement of the invasive zebra mussel (Dreissena polymorpha) and compared the response of native juvenile mussels and macroinvertebrate and periphyton communities to hypercapnia. A microcosm system of control (ambient Camb) and CO2 treatments [low PCO2 (Clow)=35,094 µatm, and high PCO2 (Chigh)=66,685 µatm)] was supplied with river water for 11 weeks. We measured zebra mussel settlement, juvenile native mussel (Lampsilis cardium and L. siliquoidea) growth and condition, and macroinvertebrate and periphyton community composition. Zebra mussels settled in all Camb tanks (n=4) from early July through August compared to one mussel in a CO2 treatment tank over the same period. Native mussel growth, tissue condition, and shell condition were reduced in CO2, particularly in the highest treatment. Benthic biomass (excluding zebra mussels) was similar in Camb and Clow but was reduced in Chigh. Macroinvertebrate community composition differed among treatments due to greater abundance of Chironomidae in Clow and Oligochaeata in Chigh. Periphyton abundance and richness increased in both CO2 treatments and was driven by increases in Cyanobacteria, Bacillariophyta and Chlorophyta. Our results indicate that efficacious levels of CO2 (~35,000 µatm PCO2) for reducing biofouling by dreissenids are tolerable to most freshwater benthic taxa. Chronic elevated CO2 infusion (>35,000 µatm PCO2) may reduce native mussel growth and condition and alter benthic invertebrate and periphyton community composition. Further refinement of CO2 application strategies is needed to determine minimal effective dose and duration to prevent dreissenid settlement and minimize effects on nontarget organisms.

Management of Biological Invasions↗
USGS2015

A field comparison of multiple techniques to quantify groundwater - surface-water interactions

Groundwater–surface-water (GW-SW) interactions in streams are difficult to quantify because of heterogeneity in hydraulic and reactive processes across a range of spatial and temporal scales. The challenge of quantifying these interactions has led to the development of several techniques, from centimeter-scale probes to whole-system tracers, including chemical, thermal, and electrical methods. We co-applied conservative and smart reactive solute-tracer tests, measurement of hydraulic heads, distributed temperature sensing, vertical profiles of solute tracer and temperature in the stream bed, and electrical resistivity imaging in a 450-m reach of a 3 rd -order stream. GW-SW interactions were not spatially expansive, but were high in flux through a shallow hyporheic zone surrounding the reach. NaCl and resazurin tracers suggested different surface–subsurface exchange patterns in the upper ⅔ and lower ⅓ of the reach. Subsurface sampling of tracers and vertical thermal profiles quantified relatively high fluxes through a 10- to 20-cm deep hyporheic zone with chemical reactivity of the resazurin tracer indicated at 3-, 6-, and 9-cm sampling depths. Monitoring of hydraulic gradients along transects with MINIPOINT streambed samplers starting ∼40 m from the stream indicated that groundwater discharge prevented development of a larger hyporheic zone, which progressively decreased from the stream thalweg toward the banks. Distributed temperature sensing did not detect extensive inflow of ground water to the stream, and electrical resistivity imaging showed limited large-scale hyporheic exchange. We recommend choosing technique(s) based on: 1) clear definition of the questions to be addressed (physical, biological, or chemical processes), 2) explicit identification of the spatial and temporal scales to be covered and those required to provide an appropriate context for interpretation, and 3) maximizing generation of mechanistic understanding and reducing costs of implementing multiple techniques through collaborative research.

Pennsylvania↗
USGS2015

Estuarine fish communities respond to climate variability over both river and ocean basins

Estuaries are dynamic environments at the land–sea interface that are strongly affected by interannual climate variability. Ocean–atmosphere processes propagate into estuaries from the sea, and atmospheric processes over land propagate into estuaries from watersheds. We examined the effects of these two separate climate-driven processes on pelagic and demersal fish community structure along the salinity gradient in the San Francisco Estuary, California, USA. A 33-year data set (1980–2012) on pelagic and demersal fishes spanning the freshwater to marine regions of the estuary suggested the existence of five estuarine salinity fish guilds: limnetic (salinity = 0–1), oligohaline (salinity = 1–12), mesohaline (salinity = 6–19), polyhaline (salinity = 19–28), and euhaline (salinity = 29–32). Climatic effects propagating from the adjacent Pacific Ocean, indexed by the North Pacific Gyre Oscillation (NPGO), affected demersal and pelagic fish community structure in the euhaline and polyhaline guilds. Climatic effects propagating over land, indexed as freshwater outflow from the watershed (OUT), affected demersal and pelagic fish community structure in the oligohaline, mesohaline, polyhaline, and euhaline guilds. The effects of OUT propagated further down the estuary salinity gradient than the effects of NPGO that propagated up the estuary salinity gradient, exemplifying the role of variable freshwater outflow as an important driver of biotic communities in river-dominated estuaries. These results illustrate how unique sources of climate variability interact to drive biotic communities and, therefore, that climate change is likely to be an important driver in shaping the future trajectory of biotic communities in estuaries and other transitional habitats.

California↗
USGS2020

Cortisol is an osmoregulatory and glucose-regulating hormone in Atlantic sturgeon, a basal ray-finned fish

Our current understanding of the hormonal control of ion regulation in aquatic vertebrates comes primarily from studies on teleost fishes, with relatively little information on more basal fishes. We investigated the role of cortisol in regulating seawater tolerance and its underlying mechanisms in an anadromous chondrostean, the Atlantic sturgeon ( Acipenser oxyrinchus ). Exposure of freshwater-reared Atlantic sturgeon to seawater (25 ppt) resulted in transient (1–3 day) increases in plasma chloride, cortisol and glucose levels and long-term (6–14 day) increases in the abundance of gill Na + /K + /2Cl − cotransporter (NKCC), which plays a critical role in salt secretion in teleosts. The abundance of gill V-type H + -ATPase, which is thought to play a role in ion uptake in fishes, decreased after exposure to seawater. Gill Na + /K + -ATPase activity did not increase in 25 ppt seawater, but did increase in fish gradually acclimated to 30 ppt. Treatment of Atlantic sturgeon in freshwater with exogenous cortisol resulted in dose-dependent increases in cortisol, glucose and gill NKCC and H + -ATPase abundance. Our results indicate that cortisol has an important role in regulating mechanisms for ion secretion and uptake in sturgeon and provide support for the hypothesis that control of osmoregulation and glucose by corticosteroids is a basal trait of jawed vertebrates.

Journal of Experimental Biology↗
USGS2009

High-resolution sclerochronological analysis of the bivalve mollusk Saxidomus gigantea from Alaska and British Columbia: techniques for revealing environmental archives and archaeological seasonality

The butter clam, Saxidomus gigantea, is one of the most commonly recovered bivalves from archaeological shell middens on the Pacific Coast of North America. This study presents the results of the sclerochronology of modern specimens of S. gigantea, collected monthly from Pender Island (British Columbia), and additional modern specimens from the Dundas Islands (BC) and Mink and Little Takli Islands (Alaska). The methods presented can be used as a template to interpret local environmental conditions and increase the precision of seasonality estimates in shellfish using sclerochronology and oxygen isotope analysis. This method can also identify, with a high degree of accuracy, the date of shell collection to the nearest fortnightly cycle, the time of day the shell was collected and the approximate tidal elevation (i.e., approx. water depth and distance from the shoreline) from which the shell was collected. Life-history traits of S. gigantea were analyzed to understand the timing of growth line formation, the duration of the growing season, the growth rate, and the reliability of annual increments. We also examine the influence of the tidal regime and freshwater mixing in estuarine locations and how these variables can affect both incremental structures and oxygen isotope values. The results of the sclerochronological analysis show that there is a latitudinal trend in shell growth that needs to be considered when using shells for seasonality studies. Oxygen isotope analysis reveals clear annual cycles with the most positive values corresponding to the annual winter growth lines, and the most negative values corresponding to high temperatures during the summer. Intra-annual increment widths demonstrate clear seasonal oscillations with broadest increments in summer and very narrow increments or no growth during the winter months. This study provides new insights into the biology, geochemistry and seasonal growth of S. gigantea, which are crucial for paleoclimate reconstructions and interpreting seasonality patterns of past human collection.

Alaska;British Columbia↗
USGS2012

Over 100 years of environmental change recorded by foraminifers and sediments in a large Gulf of Mexico estuary, Mobile Bay, AL, USA

The marine microfauna of Mobile Bay has been profoundly influenced by the development and expansion of the primary shipping channel over the last ∼100 years. Foraminifers and sediments from seven box cores with excess lead-210 chronology document that channel dredging and spoil disposal have altered circulation, reduced estuarine mixing, changed sedimentation patterns, and caused a faunal turnover within the bay. Beginning in the late 1800s, changes in estuarine mixing allowed for greater low-pH freshwater influence in the bay, and ultimately began environmental changes that resulted in the loss of calcareous foraminifers. By the early 1900s, box cores throughout Mobile Bay record a ∼100-year trend of increasing calcareous test dissolution that continues to the present. Since the completion of the current shipping channel in the 1950s, restricted tidal flushing and increased terrestrial organic matter, documented by carbon-to-nitrogen ratios, stimulated an increase in agglutinated foraminiferal densities. However, in deeper areas of the bay, hypoxic water has negatively impacted the marine microfauna. Comparisons of the present-day foraminiferal assemblage with foraminifers collected in the early 1970s indicate that the continued biologic loss of calcareous foraminifers in the bay has allowed the introduction of a new agglutinated foraminiferal species into the bay.

Alabama↗
USGS1993

How well can fishes prey on zebra mussels in eastern North America?

Literature on mollusk-eating fishes was reviewed to determine the potential for different species of fish to control zebra mussels in eastern North America. At least six species are potential predators of zebra mussels because they possess (1) both upper and lower pharyngeal teeth or (2) lower pharyngeal teeth and chewing pads located on the dorsal roof for crushing mollusk shells. Freshwater drum ( Aplodinotus grunniens ) and two centrarchids, redear sunfish ( Lepomis microlophus ) and pumpkinseed ( L. gibbosus ), possess both upper and lower pharyngeal teeth and are likely to consume more zebra mussels than fishes with only lower pharyngeal teeth. Only two catostomid species, copper and river redhorses ( Moxostoma hubbsi and M. carinatum ), have chewing pads that enable them to crush mollusks. The exotic omnivorous common carp ( Cyprinus carpio ), possessing lower teeth and a chewing pad, may prey on zebra mussels when aquatic insect larvae, its preferred food, become rare. Managing populations of drum, sunfishes and redhorses to reduce exploitation of large individuals and improve their habitats are suggested as means to intensify biological control of zebra mussels in eastern North America. Other Eurasian molluscivores, the roach ( Rutilus rutilus ) and the black carp ( Mylopharyngodon piceus ) should not be introduced into North America because research has shown repeatedly that an introduced biological controller usually does not forage for unwanted pests or reside only in preferred habitats of pests. Drum, sunfishes and redhorses should be preferred over these exotics as biological controllers of zebra mussels in North America because these native fishes will likely occupy newly established habitats of zebra mussels.

Fisheries↗
USGS2021

Egg retention of high-latitude sockeye salmon (Oncorhynchus nerka) in the Pilgrim River, Alaska, during the Pacific marine heatwave of 2014–2016

Ocean and freshwater conditions can influence spawning success of Pacific salmon ( Oncorhynchus spp.) by governing the energy content of fish at the start of and during the spawning migration. Ocean conditions determine the energy stores of fish at the freshwater entry, while freshwater conditions determine how quickly stored energy is depleted as individuals migrate to spawning grounds in natal rivers and lakes. We assessed the occurrence of sockeye salmon ( Oncorhynchus nerka ) egg retention (failure to deposit eggs) in a high-latitude (~ 65°N) watershed that has a large, inter-annual variation in the number of returning adults. We also explored relationships between ocean and freshwater conditions with egg retention of female sockeye salmon. The proportion of females with egg retention (> 50 eggs) varied by threefold (12 to 36%) across years (2013 to 2020) and was related to ocean conditions represented by the North Pacific Index (NPI). Egg retention was more common in years with low NPI values (a stronger Aleutian Low) in association with the Pacific marine heatwave of 2014–2016 that disrupted food webs. This initial study contains the first empirical data observing the influence of ocean conditions on egg retention for any Pacific salmon population. The lack of any relationship between egg retention and freshwater temperatures was consistent with water temperatures primarily occurring below thresholds associated with heat stress related mortality (< 18 °C). Understanding the amount of egg retention and how environmental drivers influence egg retention within Pacific salmon populations provides insights for managers assessing the number of successful spawners and helps refine escapement-based management efforts.

Alaska↗
USGS2005

Water-quality, phytoplankton, and trophic-status characteristics of Big Base and Little Base lakes, Little Rock Air Force Base, Arkansas, 2003-2004

Little Rock Air Force Base is the largest C-130 base in the Air Force and is the only C-130 training base in the Department of Defense. Little Rock Air Force Base is located in central Arkansas near the eastern edge of the Ouachita Mountains, near the Mississippi Alluvial Plain, and within the Arkansas Valley Ecoregion. Habitats include upland pine forests, upland deciduous forest, broad-leaved deciduous swamps, and two small freshwater lakes?Big Base Lake and Little Base Lake. Big Base and Little Base Lakes are used primarily for recreational fishing by base personnel and the civilian public. Under normal (rainfall) conditions, Big Base Lake has a surface area of approximately 39 acres while surface area of Little Base Lake is approximately 1 acre. Little Rock Air Force Base personnel are responsible for managing the fishery in these two lakes and since 1999 have started a nutrient enhancement program that involves sporadically adding fertilizer to Big Base Lake. As a means of determining the relations between water quality and primary production, Little Rock Air Force Base personnel have a need for biological (phytoplankton density), chemical (dissolved-oxygen and nutrient concentrations), and physical (water temperature and light transparency) data. To address these monitoring needs, the U.S. Geological Survey in cooperation with Little Rock Air Force Base, conducted a study to collect and analyze biological, chemical, and physical data. The U.S. Geological Survey sampled water quality in Big Base Lake and Little Base Lake on nine occasions from July 2003 through June 2004. Because of the difference in size, two sampling sites were established on Big Base Lake, while only one site was established on Little Base Lake. Lake profile data for Big Base Lake indicate that low dissolved- oxygen concentrations in the hypolimnion probably constrain most fish species to the upper 5-6 feet of depth during the summer stratification period. Dissolved-oxygen concentrations in Big Base Lake below a depth of 6 feet generally were less than 3 milligrams per liter for summer months that were sampled in 2003 and 2004. Some evidence indicates that phosphorus was limiting primary production during the sampling period. Dissolved nitrogen constituents frequently were detected in water samples (indicating availability) but dissolved phosphorus constituents-orthophosphorus and dissolved phosphorus-were not detected in any samples collected at the two lakes. The absence of dissolved phosphorus constituents and presence of total phosphorus indicates that all phosphorus was bound to suspended material (sediment particles and living organisms). Nitrogen:phosphorus ratios on most sampling occasions tended to be slightly higher than 16:1, which can be interpreted as further indication that phosphorus could be limiting primary production to some extent. An alkalinity of 20 milligrams per liter of calcium carbonate or higher is recommended to optimize nutrient availability and buffering capacity in recreational fishing lakes and ponds. Median values for water samples collected at the three sites ranged from 12-13 milligrams per liter of calcium carbonate. Alkalinities ranged from 9-60 milligrams per liter of calcium carbonate, but 13 of 17 samples collected at the deepest site had alkalinities less than 20 milligrams per liter of calcium carbonate. Results of three trophic-state indices, and a general trophic classification, as well as abundant green algae and large growths of blue-green algae indicate that Big Base Lake may be eutrophic. Trophic-state index values calculated using total phosphorus, chlorophyll a, and Secchi disc measurements from both lakes generally exceeded criteria at which lakes are considered to be eutrophic. A second method of determining lake trophic status-the general trophic classification-categorized the three sampling sites as mesotrophic or eutrophic. Green algae were found to be in abundance throughout mos

Scientific Investigations Report↗
USGS2021

A global perspective on the influence of the COVID-19 pandemic on freshwater fish biodiversity

The COVID-19 global pandemic and resulting effects on the economy and society (e.g., sheltering-in-place, alterations in transportation, changes in consumer behaviour, loss of employment) have yielded some benefits and risks to biodiversity. Here, we considered the ways the COVID-19 pandemic has influenced (or may influence) freshwater fish biodiversity (e.g., richness, abundance). In many cases, we could only consider potential impacts using documented examples (often from the media) of likely changes, because anecdotal observations are still emerging and data-driven studies are yet to be completed or even undertaken. We evaluated the potential for the pandemic to either mitigate or amplify widely acknowledged, pre-existing threats to freshwater fish biodiversity (i.e., invasive species, pollution, fragmentation, flow alteration, habitat loss and alteration, climate change, exploitation). Indeed, we identified examples spanning the extremes of positive and negative outcomes for almost all known threats. We also considered the pandemic's impact on freshwater fisheries demand, assessment, research, compliance monitoring, and management interventions (e.g., restoration), with disruptions being experienced in all domains. Importantly, we provide a forward-looking synthesis that considers the potential mechanisms and pathways by which the consequences of the pandemic may positively and negatively impact freshwater fishes over the longer term. We conclude with a candid assessment of the current management and policy responses and the extent to which they ensure freshwater fish populations and biodiversity are conserved for human and aquatic ecosystem benefits in perpetuity.

Biological Conservation↗
USGS2001

Pesticide toxicity index for freshwater aquatic organisms

The U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program is designed to assess current water-quality conditions, changes in water quality over time, and the effects of natural and human factors on water quality for the Nation's streams and ground-water resources. For streams, one of the most difficult parts of the assessment is to link chemical conditions to effects on aquatic biota, particularly for pesticides, which tend to occur in streams as complex mixtures with strong seasonal patterns. A Pesticide Toxicity Index (PTI) was developed that combines pesticide exposure of aquatic biota (measured concentrations of pesticides in stream water) with toxicity estimates (standard endpoints from laboratory bioassays) to produce a single index value for a sample or site. The development of the PTI was limited to pesticide compounds routinely measured in NAWQA studies and to toxicity data readily available from existing databases. Qualifying toxicity data were found for one or more types of test organisms for 75 of the 83 pesticide compounds measured in NAWQA samples, but with a wide range of bioassays per compound (1 to 65). There were a total of 2,824 bioassays for the 75 compounds, including 287 48-hour EC50 values (concentration at which 50 percent of test organisms exhibit a nonlethal response) for freshwater cladocerans, 585 96-hour LC50 values (concentration lethal to 50 percent of test organisms) for freshwater benthic invertebrates, and 1,952 96-hour LC50 values for freshwater fish. The PTI for a particular sample is the sum of toxicity quotients (measured concentration divided by the median toxicity concentration from bioassays) for each detected pesticide. The PTI can be calculated for specific groups of pesticides and for specific taxonomic groups. While the PTI does not determine whether water in a sample is toxic, its values can be used to rank or compare the toxicity of samples or sites on a relative basis for use in further analysis or additional assessments. The PTI approach may be useful as a basis for comparing the potential significance of pesticides in different streams on a common basis, for evaluating relations between pesticide exposure and observed biological conditions, and for prioritizing where further studies are most needed.

Water-Resources Investigations Report↗
USGS2009

Warmwater fish in wadeable streams

Both “warmwater” and “wadeable” are terms of convenience without precise definition and are used by biologists to describe streams that are generally too warm to have sustainable salmonid populations and can be safely traversed by walking (i.e., a section of stream should have the majority of its length less than 1 m deep, and it should be possible to cross in chest waders in nearly all areas). Warmwater streams in North America are estimated to provide more than a half-million kilometers of fishable waters and many times that amount of waters containing fish (Rabeni and Jacobson 1999). Warmwater streams have experienced a surge of attention in the past three decades because of increased sportfishing opportunities due to point-source pollution abatement and because of the popularity of using fish assemblages as indicators of biological integrity for regulatory and management purposes. At least 38 states have fish bioassessment programs in place (USEPA 2002). Sampling fish in warmwater streams is usually done for one of two reasons: (1) to evaluate a targeted species (e.g., sport fish or endangered species), or (2) to evaluate the entire fish assemblage. Thirty-two species of sport fishes, as defined by state and provincial agencies, occur in warmwater streams. The most popular are largemouth bass, smallmouth bass, spotted bass, striped bass, muskellunge, northern pike, walleye, several catfishes, and common carp. Important species regionally are rock bass, pumpkinseed, bluegill, white crappie, black crappie, other sunfishes, white perch, yellow perch, chain pickerel, buffalo, other suckers, and freshwater drum.

Book chapter↗
USGS2017

Sampling uncharted waters: Examining rearing habitat of larval Longfin Smelt (Spirinchus thaleichthys) in the upper San Francisco Estuary

The southern-most reproducing Longfin Smelt population occurs in the San Francisco Estuary, California, USA. Long-term monitoring of estuarine habitat for this species has generally only considered deep channels, with little known of the role shallow waters play in supporting their early life stage. To address the need for focused research on shallow-water habitat, a targeted study of Longfin Smelt larvae in littoral habitat was conducted to identify potential rearing habitats during 2013 and 2014. Our study objectives were to (1) determine if larval densities vary between littoral habitats (tidal slough vs. open-water shoal), (2) determine how larval densities in littoral habitats vary with physicochemical and biological attributes, (3) determine if larval densities vary between littoral habitats and long-term monitoring channel collections, and (4) determine what factors predict larval rearing distributions from the long-term monitoring channel collections. Larval densities did not vary between littoral habitats but they did vary between years. Water temperature, salinity, and chlorophyll a were found important in predicting larval densities in littoral habitats. Larval densities do not vary between littoral and channel surveys; however, the analysis based on channel data suggests that Longfin Smelt are hatching and rearing in a much broader region and under higher salinities (∼2–12 psu) than previously recognized. Results of this study indicate that conservation efforts should consider how freshwater flow, habitat, climate, and food webs interact as mechanisms that influence Longfin Smelt recruitment in estuarine environments.

California↗