USGS Science⌕ Search

SEARCH · USGS Science

Results for “Ecological Applications”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 559 records · Page 31Linked to original sources
USGS1995

Evidence that PCBs are approaching stable concentrations in Lake Michigan fishes

We examined PCB concentration data for seven species of Lake Michigan fishes to determine what trends were apparent °20 yr after PCB restrictions became effective. Total PCB concentrations in all seven species, lake trout (Salvelinus namaycush), rainbow trout (Oncorhynchus mykiss), brown trout (Salmo trutta), chinook salmon (Oncorhynchus tshawytscha), coho salmon (Oncorhynchus kisutch), alewife (Alosa pseudoharengus), and bloater chub (Coregonus hoyi) declined and appeared to stabilize in the mid-to-late 1980s. Concentrations in two species, chinook and coho salmon, appear to have increased slightly since the late 1980s. All species are currently well below the high PCB levels that existed when PCB use was curtailed in the 1970s. We believe stabilizing concentrations are the result of large pools of PCBs that are being recycled in the environment. Atmospheric and sediment PCB inputs to the lake probably constitute current PCB sources. Increasing concentrations in chinook and coho salmon are likely the result of changing growth dynamics caused by alterations in the mid-trophic levels of the food web. Median stable PCB concentrations estimated in this analysis are below the current FDA action level of 2 mg/kg, but not appreciably below this threshold. Improvements beyond these levels may result if management practices that maximize fish growth rates are implemented. Detection of future improvements in PCB levels may require samples in the range of 1000-2000 fish because of the high variability in PCB concentrations among individuals.

Ecological Applications↗
USGS1994

Recent accretion in two managed marsh impoundments in coastal Louisiana

Recent accretion was measured by the feldspar marker horizon method in two gravity-drained, managed, marsh impoundments and unmanaged reference marshes located on the rapidly subsiding coast of Louisiana. Water level management was designed to limit hydrologic exchange to the managed marsh by regulating the direction and rate of water flows. During a drawdown-flooding water management cycle, the unmanaged reference marshes had significantly higher vertical accretion rates, higher soil bulk density and soil mineral matter content, lower soil organic matter content, and higher rates of organic matter accumulation than the managed marsh. The rate of mineral matter accumulation was higher in both reference marshes, but was significantly higher in only one. Spatial variability in accumulation rates was low when analyzed in one managed marsh site, suggesting a primarily autochthonous source of matter. In contrast, the associated reference marsh apparently received allochthonous material that settled out in a distinct spatial pattern as water velocity decreased. The impoundment marshes experienced an accretion deficit of one full order of magnitude (0.1 vs. 1.0 m/yr) based on comparison of accretion and sea level rise data, while the unmanaged reference marshes experienced a five-fold smaller deficit or no deficit. These data suggest that the gravity-drained impoundments likely have a shorter life expectancy than the reference marshes in the rapidly subsiding Louisiana coast.

Ecological Applications↗
USGS1996

Episodic acidification of small streams in the northeastern United States: Episodic response project

The Episodic Response Project (ERP) was an interdisciplinary study designed to address uncertainties about the occurrence, nature, and biological effects of episodic acidification of streams in the northeastern United States. The ERP research consisted of intensive studies of the chemistry and biological effects of episodes in 13 streams draining forested watersheds in the three study regions: the Northern Appalachian region of Pennsylvania and the Catskill and Adirondack Mountains of New York. Wet deposition was measured in each of the three study regions. Using automated instruments and samplers, discharge and chemistry of each stream was monitored intensively from fall 1988 through spring 1990. Biological studies focused on brook trout and native forage fish. Experimental approaches included in situ bioassays, radio transmitter studies of fish movement, and fish population studies. This paper provides an overview of the ERP, describes the methodology used in hydrologic and water chemistry components of the study, and summarizes the characteristics of the study sites, including the climatic and deposition conditions during the ERP and the general chemical characteristics of the study streams.

Ecological Applications↗
USGS1996

Episodic acidification of small streams in the northeastern United States: Ionic controls of episodes

As part of the Episodic Response Project (ERP), we intensively monitored discharge and stream chemistry of 13 streams located in the Northern Appalachian region of Pennsylvania and in the Catskill and Adirondack Mountains of New York from fall 1988 to spring 1990. The ERP clearly documented the occurrence of acidic episodes with minimum episodic pH ≤ 5 and inorganic monomeric Al (Al im ) concentrations > 150 μg/L in at least two study streams in each region. Several streams consistently experienced episodes with maximum Al im concentrations >350 μg/L. Acid neutralizing capacity (ANC) depressions resulted from complex interactions of multiple ions. Base cation decreases often made the most important contributions to ANC depressions during episodes. Organic acid pulses were also important contributors to ANC depressions in the Adirondack streams, and to a lesser extent, in the Catskill and Pennsylvania streams. Nitrate concentrations were low in the Pennsylvania streams, whereas the Catskill and Adirondack study streams had high NO 3 - concentrations and large episodic pulses (≤ 54 μ eq/L). Most of the Pennsylvania study streams also frequently experienced episodic pulses of SO 4 2- (≤ 78 μ eq/L), whereas the Adirondack and Catskill streams did not. High baseline concentrations of SO 4 2- (all three study areas) and NO 3 - (Adirondacks and Catskills) reduced episodic minimum ANC, even when these ions did not change during episodes. The ion changes that controlled the most severe episodes (lowest minimum episodic ANC) differed from the ion changes most important to smaller, more frequent episodes. Pulses of NO 3 - (Catskills and Adirondacks), SO 4 2- (Pennsylvania), or organic acids became more important during major episodes. Overall, the behavior of streamwater SO 4 2- and NO 3 - is an indicator that acidic deposition has contributed to the severity of episodes in the study streams.

Ecological Applications↗
USGS1996

Episodic acidification of small streams in the northeastern United States: Fish mortality in field bioassays

In situ bioassays were performed as part of the Episodic Response Project, to evaluate the effects of episodic stream acidification on mortality of brook trout (Salvelinus fontinalis) and forage fish species. We report the results of 122 bioassays in 13 streams of the three study regions: the Adirondack mountains of New York, the Catskill mountains of New York, and the Northern Appalachian Plateau of Pennsylvania. Bioassays during acidic episodes had significantly higher mortality than did bioassays conducted under nonacidic conditions, but there was little difference in mortality rates in bioassays experiencing acidic episodes and those experiencing acidic conditions throughout the test period. Multiple logistic regression models were used to relate bioassay mortality rates to summary statistics of time-varying stream chemistry (inorganic monomeric aluminum, calcium, pH, and dissolved organic carbon) estimated for the 20-d bioassay periods. The large suite of candidate regressors also included biological, regional, and seasonal factors, as well as several statistics summarizing various features of aluminum exposure duration and magnitude. Regressor variable selection and model assessment were complicated by multicolinearity and overdispersion. For the target fish species, brook trout, bioassay mortality was most closely related to time-weighted median inorganic aluminum. Median Ca and minimum pH offered additional explanatory power, as did stream-specific aluminum responses. Due to high multicollinearity, the relative importance of different aluminum exposure duration and magnitude variables was difficult to assess, but these variables taken together added no significant explanatory power to models already containing median aluminum. Between 59 and 79% of the variation in brook trout mortality was explained by models employing between one and five regressors. Simpler models were developed for smaller sets of bioassays that tested slimy and mottled sculpin (Cottus cognatus and C. bairdi) as well as blacknose dace (Rhinichthys atratulus). For these forage species a single inorganic aluminum exposure variable successfully accounted for 86-98% of the observed mortality. Even though field bioassays showed evidence of multiple toxicity factors, models results suggest that adequate mortality predictions can be obtained from a single index of inorganic Al concentrations during exposure periods.

Ecological Applications↗
USGS1996

Episodic acidification of small streams in the northeastern United states: Effects on fish populations

As part of the Episodic Response Project (ERP), we studied the effects of episodic acidification on fish in 13 small streams in the northeastern United States: four streams in the Adirondack region of New York, four streams in the Catskills, New York, and five streams in the northern Appalachian Plateau, Pennsylvania. In situ bioassays with brook trout (Salvelinus fontinalis) and a forage fish species (blacknose dace (Rhinichthys atratulus), mottled sculpin (Cottus bairdi), or slimy sculpin (Cottus cognatus), depending on the region) measured direct toxicity. Movements of individual brook trout, in relation to stream chemistry, were monitored using radiotelemetry. Electrofishing surveys assessed fish community status and the density and biomass of brook trout in each stream. During low flow, all streams except one had chemical conditions considered suitable for the survival and reproduction of most fish species (median pH 6.0-7.2 during low flow; inorganic Al < 60 μg/L). ERP streams with suitable conditions during low flow, but moderate-to-severe episodic acidification during high flow, had higher fish mortality in bioassays, net down-stream movement of brook trout during events, and lower brook trout density and biomass compared to nonacidic streams, and lacked acid-sensitive fish species (blacknose dace and sculpin). Movement of trout into refugia (areas with higher pH and lower Al) during episodes partially mitigated the adverse effects of episodes. Recolonization from alkaline tributaries or microhabitats can maintain low densities of fish in streams that experience severe acidic episodes, but it is not sufficient to sustain fish densities and community composition at levels expected in the absence of these episodes. Fish responses to acid-base chemistry were fairly consistent across regions. In general, trout abundance was reduced and acid-sensitive fish species were absent from ERP streams with median pH < 5.0-5.2 during high flow and inorganic Al > 100-200 μg/L. We conclude that episodic acidification can have long-term effects on fish communities in small streams.

Ecological Applications↗
USGS1996

Spatial and temporal variation in soil and vegetation impacts on campsites

We studied the impacts of camping on soil and vegetation at Delaware Water Gap national Recreation Area. We assessed the magnitude of impact on campsites that varied in amount of use and in topographic position. We also evaluated change over a 5-yr period on long-established, recently opened, and recently closed campsites, as well as on plots subjected to experimental trampling. Campsite impacts were intense and spatially variable. Amount of use and topographic position explained some of this variation. Soil and vegetation conditions changed rapidly when campsites were initially opened to use and when they were closed to use. Changes were less pronounced on the long-established campsites that remained open to use. In the trampling experiments, impact varied greatly with trampling intensity and between vegetation types. An open-canopy grassland vegetation type was much more resistant to trampling than a forb-dominated forest vegetation type. Campsite impacts increased rapidly with initial disturbance, stabilized with ongoing disturbance, and–in contrast to what has been found in most other studies–decreased rapidly once disturbance was terminated. Implications of these results for campsite management strategies, such as use concentration or dispersal, and rotation or closure of campsites, are discussed.

New Jersey, Pennsylvania↗
USGS1996

Effects of nutrients and hydroperiod on Typha, Cladium, and Eleocharis: Implications for everglades restoration

The recent expansion of Typha domingensis ( Typha ) into areas of the Everglades previously dominated by Cladium jamaicense ( Cladium ) communities has led to competing hypotheses about the importance of nutrient concentration vs. hydroperiod in controlling the distribution of these species. In this study, experimental mixtures of Typha domingensis , Cladium jamaicense , and Eleocharis interstincta ( Eleocharis ), a member of the Cladium community, were subjected to two levels of nutrient concentration and three contrasting hydroperiods to determine how these variables might affect Typha 's ability to displace the Cladium community. Mixtures of the three species were established in outdoor tanks containing soil from the northern Everglades region where the experiment was conducted. Nutrient treatments consisted of nutrient additions to adjust ambient water concentrations to either 50 μg/L phosphorus (P) or 100 μg/L P plus nitrogen (N). The three hydroperiods were achieved by maintaining water depths within ranges observed in the northern Everglades. Maximum water depths of 15, 30, and 60 cm were established throughout the wet season (May‐November) followed by lowering to 5 cm during the dry season. Over a 2‐yr period, biomass was monitored nondestructively and aboveground material was harvested at the end of the experiment. Analysis of the biomass changes over time showed that differences between the species developed by the end of the first growing season. Typha and Eleocharis had initial growth rates substantially higher than those observed for Cladium . Typha 's growth in mixtures responded positively to both elevated nutrients (by as much as 45%) as well as to increased water depth (by as much as 60%), while Cladium and Eleocharis did not increase in response to these variables. Tissue P concentrations were found to be higher for Typha and Eleocharis than for Cladium under nearly all conditions. Net accumulation of P in Typha shoots was 2‐3 times greater than in the other species. The enhancement of Typha by elevated nutrients and increased flooding is associated with a syndrome of life history characteristics that includes rapid growth rates, high tissue concentrations of P, tall leaves, and a greater response to contrasting environmental conditions. Cladium , in contrast, showed a slow growth rate, low tissue concentrations of P, a greater capacity to resist invasion by Typha in shallow waters, and less of a growth response to contrasting environmental conditions, traits that would seem to be well suited to the nutrient‐poor, hydrologically unstable conditions natural to the Everglades. Results from this study suggest that attempts to limit the spread of Typha should consider hydrologic restoration as well as reduction in surface water nutrients.

Florida↗
USGS1996

Population delineation of polar bears using satellite collar data

To produce reliable estimates of the size or vital rates of a given population, it is important that the boundaries of the population under study are clearly defined. This is particularly critical for large, migratory animals where levels of sustainable harvest are based on these estimates, and where small errors may have serious long-term consequences for the population. Once populations are delineated, rates of exchange between adjacent populations can be determined and accounted/corrected for when calculating abundance (e.g., based on mark-recapture data). Using satellite radio-collar locations for polar bears in the western Canadian Arctic, we illustrate one approach to delineating wildlife populations that integrates cluster analysis methods for determining group membership with home range plotting procedures to define spatial utilization. This approach is flexible with respect to the specific procedures used and provides an objective and quantitative basis for defining population boundaries.

Ecological Applications↗
USGS1996

A bayesian approach to classification criteria for spectacled eiders

To facilitate decisions to classify species according to risk of extinction, we used Bayesian methods to analyze trend data for the Spectacled Eider, an arctic sea duck. Trend data from three independent surveys of the Yukon-Kuskokwim Delta were analyzed individually and in combination to yield posterior distributions for population growth rates. We used classification criteria developed by the recovery team for Spectacled Eiders that seek to equalize errors of under- or overprotecting the species. We conducted both a Bayesian decision analysis and a frequentist (classical statistical inference) decision analysis. Bayesian decision analyses are computationally easier, yield basically the same results, and yield results that are easier to explain to nonscientists. With the exception of the aerial survey analysis of the 10 most recent years, both Bayesian and frequentist methods indicated that an endangered classification is warranted. The discrepancy between surveys warrants further research. Although the trend data are abundance indices, we used a preliminary estimate of absolute abundance to demonstrate how to calculate extinction distributions using the joint probability distributions for population growth rate and variance in growth rate generated by the Bayesian analysis. Recent apparent increases in abundance highlight the need for models that apply to declining and then recovering species.

Alaska↗
USGS2002

Interactions of an insecticide with competition and pond drying in amphibian communities

Amphibian populations are often imbedded in agricultural landscapes. Therefore the potential for contamination of their habitat is considerable. Our study examined the effects of an insecticide (carbaryl, a neurotoxin), on larval amphibian communities experiencing natural stresses of competition for resources, predation, and pond drying. In a set of experimental ponds, tadpoles of three anuran species (southern leopard frog [ Rana sphenocephala ], plains leopard frog [ R. blairi ], and the Woodhouse's toad [ Bufo woodhousii ]) were added to 1000-L ponds containing leaf litter, plankton, two newts ( Notophthalmus viridescens ), and four overwintered green frog ( R. clamitans ) tadpoles. We manipulated the overall tadpole density (low or high), pond hydroperiod (constant or drying), and chemical exposure (0, 3.5, 5.0, or 7.0 mg/L carbaryl) of the ponds. We measured mass, time, and survival to metamorphosis to determine treatment effects. Carbaryl positively affected Woodhouse's toad survival, although it had a negligible effect on both leopard frog species. Tadpole density interacted with the chemical treatment: Proportionately more Woodhouse's toads survived to metamorphosis in high-density environments than in low-density or control environments. Greater survival may be an indirect effect of increased algal food resources from carbaryl exposure. Most newts lost mass over the course of the experiment, although ponds with drying hydroperiods and high anuran density were the least favorable environments. Overwintered green frogs exposed to carbaryl had longer larval periods on average than did green frogs in control ponds. Our study demonstrated that even sublethal, short-lived contaminants can alter natural communities in ways that cannot be predicted from simple, one-factor studies.

Missouri↗
USGS2005

Roads and traffic: Effects on ecology and wildlife habitat use; applications for cooperative adaptive management

The land of the United States in dissected by more than 4 million miles of roads that fragment wildlife habitat on both public and private lands. Traffic on these roads causes additional effects. On secondary roads, which provide access to the most natural habitat, the levels, timing, and types of traffic are seldom known. In order to understand the effects of traffic on wildlife, USGS is conducting research cooperatively with the Bureau of Land Management, the U.S. Forest Service, the National Park Service, and the Colorado Division of Wildlife.

Colorado↗
USGS2003

Marine reserve design for conservation and fisheries management: a case study from the California Channel Islands

Five races of cottontail rabbits belonging to three species occur in Virginia. One of them, the Mearns cottontail (Sylvilagus floridanus mearnsi), is reported here for the first time. It occurs in six southwestern counties of the state, while the eastern cottontail (S. f. mallurus) occurs in the remainder of the state with the exception of Smith and Fishermans islands off the eastern coast of Cape Charles, where it is replaced by Hitchens cottontail (S. f. hitchensi). The New England cottontail (S. transitionalis) is found on the higher mountain peaks, above 3000 feet, and the swamp rabbit (S. palustris) occurs in the Dismal Swamp region of southeastern Virginia.....The height of the breeding season for the eastern cottontail in Virginia is March and April, but breeding continues through the entire year except in December and January. The average litter size based on embryo counts was 4.7. The sex ratio of 234 specimens from all parts of the state, taken mostly in the December to February period, was 53 males to 47 females. That of a group of 145 rabbits live-trapped at Blacksburg during February and Marchwas 58 males to 42 females. The figures show that males are more active than females during the winter months, and therefore are more easily taken then....In transplanting cottontails from one section of the state to another, it is recommended that only cottontails of the same race as those originally present in the region being restocked be released there....Tularemia is not a common disease among rabbits in Virginia, but the rabbit ticks are often carriers of the disease and may transmit it to rabbits. Rabbit ticks are also found to be carriers of Rocky Mountain fever and American Q. fever. After the ticks drop off the rabbits to hibernate in the ground, which is likely to occur during mid-winter in Virginia, there is relatively little danger of humans contracting tularemia by contact with rabbits. Present laws in Virginia which prohibit rabbit hunting until the opening of the general hunting season, November 15and November 20--west and east of the Blue Ridge Mountains, respectively--protect the licensed hunters to which these regulations apply, but landowners or tenants are still allowed to take rabbits for their own use on their own land at any time. It is recommended that as a public health measure the taking of cottontails be completely prohibited to all until the opening of the general hunting season.

Ecological Applications↗
USGS2006

Estimating the abundance of mouse populations of known size: promises and pitfalls of new methods

Knowledge of animal abundance is fundamental to many ecological studies. Frequently, researchers cannot determine true abundance, and so must estimate it using a method such as mark-recapture or distance sampling. Recent advances in abundance estimation allow one to model heterogeneity with individual covariates or mixture distributions and to derive multimodel abundance estimators that explicitly address uncertainty about which model parameterization best represents truth. Further, it is possible to borrow information on detection probability across several populations when data are sparse. While promising, these methods have not been evaluated using mark?recapture data from populations of known abundance, and thus far have largely been overlooked by ecologists. In this paper, we explored the utility of newly developed mark?recapture methods for estimating the abundance of 12 captive populations of wild house mice (Mus musculus). We found that mark?recapture methods employing individual covariates yielded satisfactory abundance estimates for most populations. In contrast, model sets with heterogeneity formulations consisting solely of mixture distributions did not perform well for several of the populations. We show through simulation that a higher number of trapping occasions would have been necessary to achieve good estimator performance in this case. Finally, we show that simultaneous analysis of data from low abundance populations can yield viable abundance estimates.

Ecological Applications↗
USGS2004

Estimating site occupancy and species detection probability parameters for terrestrial salamanders

Recent, worldwide amphibian declines have highlighted a need for more extensive and rigorous monitoring programs to document species occurrence and detect population change. Abundance estimation methods, such as mark-recapture, are often expensive and impractical for large-scale or long-term amphibian monitoring. We apply a new method to estimate proportion of area occupied using detection/nondetection data from a terrestrial salamander system in Great Smoky Mountains National Park. Estimated species-specific detection probabilities were all <1 and varied among seven species and four sampling methods. Time (i.e., sampling occasion) and four large-scale habitat characteristics (previous disturbance history, vegetation type, elevation, and stream presence) were important covariates in estimates of both proportion of area occupied and detection probability. All sampling methods were consistent in their ability to identify important covariates for each salamander species. We believe proportion of area occupied represents a useful state variable for large-scale monitoring programs. However, our results emphasize the importance of estimating detection and occupancy probabilities rather than using an unadjusted proportion of sites where species are observed where actual occupancy probabilities are confounded with detection probabilities. Estimated detection probabilities accommodate variations in sampling effort; thus comparisons of occupancy probabilities are possible among studies with different sampling protocols.

North Carolina, Tennessee↗
USGS2006

Proximate and landscape factors influence grassland bird distributions

Ecologists increasingly recognize that birds can respond to features well beyond their normal areas of activity, but little is known about the relative importance of landscapes and proximate factors or about the scales of landscapes that influence bird distributions. We examined the influences of tree cover at both proximate and landscape scales on grassland birds, a group of birds of high conservation concern, in the Sheyenne National Grassland in North Dakota, USA. The Grassland contains a diverse array of grassland and woodland habitats. We surveyed breeding birds on 2015 100 m long transect segments during 2002 and 2003. We modeled the occurrence of 19 species in relation to habitat features (percentages of grassland, woodland, shrubland, and wetland) within each 100-m segment and to tree cover within 200-1600 m of the segment. We used information-theoretic statistical methods to compare models and variables. At the proximate scales, tree cover was the most important variable, having negative influences on 13 species and positive influences on two species. In a comparison of multiple scales, models with only proximate variables were adequate for some species, but models combining proximate with landscape information were best for 17 of 19 species. Landscape-only models were rarely competitive. Combined models at the largest scales (800-1600 m) were best for 12 of 19 species. Seven species had best models including 1600-m landscapes plus proximate factors in at least one year. These were Wilson's Phalarope (Phalaropus tricolor), Sedge Wren (Cistothorus platensis), Field Sparrow (Spizella pusilla), Grasshopper Sparrow (Ammodramus savannarum), Bobolink (Dolychonix oryzivorus), Red-winged Blackbird (Agelaius phoeniceus), and Brown-headed Cowbird (Molothrus ater). These seven are small-bodied species; thus larger-bodied species do not necessarily respond most to the largest landscapes. Our findings suggest that birds respond to habitat features at a variety of scales. Models with only landscape-scale tree cover were rarely competitive, indicating that broad-scale modeling alone, such as that based solely on remotely sensed data, is likely to be inadequate in explaining species distributions. ?? 2006 by the Ecological Society of America.

Ecological Applications↗
USGS2006

Simulating the effects of frequent fire on southern california coastal shrublands

Fire disturbance is a primary agent of change in the mediterranean-climate chaparral shrublands of southern California, USA. However, fire frequency has been steadily increasing in coastal regions due to ignitions at the growing wildland-urban interface. Although chaparral is resilient to a range of fire frequencies, successively short intervals between fires can threaten the persistence of some species, and the effects may differ according to plant functional type. California shrublands support high levels of biological diversity, including many endangered and endemic species. Therefore, it is important to understand the long-term effects of altered fire regimes on these communities. A spatially explicit simulation model of landscape disturbance and succession (LANDIS) was used to predict the effects of frequent fire on the distribution of dominant plant functional types in a study area administered by the National Park Service. Shrubs dependent on fire-cued seed germination were most sensitive to frequent fire and lost substantial cover to other functional types, including drought-deciduous subshrubs that typify coastal sage scrub and nonnative annual grasses. Shrubs that resprout were favored by higher fire frequencies and gained in extent under these treatments. Due to this potential for vegetation change, caution is advised against the widespread use of prescribed fire in the region. ?? 2006 by the Ecological Society of America.

Ecological Applications↗