USGS Science⌕ Search

SEARCH · USGS Science

Results for “Clear Waters”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 559 records · Page 31Linked to original sources

Increasing influence of air temperature on upper Colorado River streamflow

This empirical study examines the influence of precipitation, temperature, and antecedent soil moisture on upper Colorado River basin (UCRB) water year streamflow over the past century. While cool season precipitation explains most of the variability in annual flows, temperature appears to be highly influential under certain conditions, with the role of antecedent fall soil moisture less clear. In both wet and dry years, when flow is substantially different than expected given precipitation, these factors can modulate the dominant precipitation influence on streamflow. Different combinations of temperature, precipitation, and soil moisture can result in flow deficits of similar magnitude, but recent droughts have been amplified by warmer temperatures that exacerbate the effects of relatively modest precipitation deficits. Since 1988, a marked increase in the frequency of warm years with lower flows than expected, given precipitation, suggests continued warming temperatures will be an increasingly important influence in reducing future UCRB water supplies.

Geophysical Research Letters↗

The distribution of bromide in water in the Floridan aquifer system, Duval County, northeastern Florida

Although Duval County, Florida, has ample ground-water resources for public supply, the potential exists for a problem with excessive disinfectant by-products. These disinfectant by-products result from the treatment of raw water containing low concentrations of bromide and naturally occurring organic compounds. Because of this potential problem, the relation of bromide concentrations to aquifer tapped, well location and depth, and chemical characteristics of water in the Floridan aquifer system underlying Duval County were studied to determine if these relations could be applied to delineate water with low-bromide concentrations for future supplies. In 1992, water samples from 106 wells that tap the Floridan aquifer system were analyzed for bromide and major dissolved constituents. A comparison of bromide concentrations from the 1992 sampling with data from earlier studies (1979-80) indicates that higher bromide concentrations were detected during the earlier studies. The difference between the old and new data is probably because of a change in analytical methodology in the analysis of samples. Bromide concentrations exceeded the detection limit (0.10 milligrams per liter) in water from 28 of the 106 wells (26 percent) sampled in 1992. The maximum concentration was 0.56 milligrams per liter. There were no relations between bromide and major dissolved constituents, well depth, or aquifer tapped that would be useful for determining bromide concentrations. Areal patterns of bromide occurrence are not clearly defined, but areas with relatively high bromide concentrations tend to be located in a triangular area near the community of Sunbeam, Florida, and along the St. Johns River throughout Duval County.

Florida↗

Methods for measuring denitrification: Diverse approaches to a difficult problem

Denitrification, the reduction of the nitrogen (N) oxides, nitrate (NO 3 − ) and nitrite (NO 2 − ), to the gases nitric oxide (NO), nitrous oxide (N 2 O), and dinitrogen (N 2 ), is important to primary production, water quality, and the chemistry and physics of the atmosphere at ecosystem, landscape, regional, and global scales. Unfortunately, this process is very difficult to measure, and existing methods are problematic for different reasons in different places at different times. In this paper, we review the major approaches that have been taken to measure denitrification in terrestrial and aquatic environments and discuss the strengths, weaknesses, and future prospects for the different methods. Methodological approaches covered include (1) acetylene-based methods, (2) 15 N tracers, (3) direct N 2 quantification, (4) N 2 :Ar ratio quantification, (5) mass balance approaches, (6) stoichiometric approaches, (7) methods based on stable isotopes, (8) in situ gradients with atmospheric environmental tracers, and (9) molecular approaches. Our review makes it clear that the prospects for improved quantification of denitrification vary greatly in different environments and at different scales. While current methodology allows for the production of accurate estimates of denitrification at scales relevant to water and air quality and ecosystem fertility questions in some systems (e.g., aquatic sediments, well-defined aquifers), methodology for other systems, especially upland terrestrial areas, still needs development. Comparison of mass balance and stoichiometric approaches that constrain estimates of denitrification at large scales with point measurements (made using multiple methods), in multiple systems, is likely to propel more improvement in denitrification methods over the next few years.

Ecological Applications↗

Stratigraphy of lower to middle Paleozoic rocks of northern Nevada and the Antler orogeny

Commonly accepted concepts concerning the lower Paleozoic stratigraphy of northern Nevada are based on the assumption that the deep-water aspects of Ordovician to Devonian siliceous strata are due to their origin in a distant oceanic environment, and their presence where we find them is due to tectonic emplacement by the Roberts Mountains thrust. The concept adopted here is based on the assumption that their deep-water aspects are the result of sea-level rise in the Cambrian, and all of the Paleozoic strata in northern Nevada are indigenous to that area. The lower part of the Cambrian consists mainly of shallow-water cross-bedded sands derived from the craton. The upper part of the Cambrian, and part of the Ordovician, consists mainly of deep-water carbonate clastics carried by turbidity currents from the carbonate shelf in eastern Nevada, newly constructed as a result of sea-level rise. Ordovician to mid-Devonian strata are relatively deep-water siliceous deposits, which are the western facies assemblage. The basal contact of this assemblage on autochthonous Cambrian rocks is exposed in three mountain ranges and is clearly depositional in all three. The western facies assemblage can be divided into distinct stratigraphic units of regional extent. Many stratigraphic details can be explained simply by known changes in sea level. Upper Devonian to Mississippian strata are locally and westerly derived orogenic clastic beds deposited disconformably on the western facies assemblage. This disconformity, clearly exposed in 10 mountain ranges, indicates regional uplift and erosion of the western facies assemblage and absence of local deformation. The disconformity represents the Antler orogeny.

Nevada↗

Eutrophication of freshwater and marine ecosystems

Initial understanding of the links between nutrients and aquatic productivity originated in Europe in the early 1900s, and our knowledge base has expanded greatly during the past 40 yr. This explosion of eutrophication-related research has made it unequivocally clear that a comprehensive strategy to prevent excessive amounts of nitrogen and phosphorus from entering our waterways is needed to protect our lakes, rivers, and coasts from water quality deterioration. However, despite these very significant advances, cultural eutrophication remains one of the foremost problems for protecting our valuable surface water resources. The papers in this special issue provide a valuable cross section and synthesis of our current understanding of both freshwater and marine eutrophication science. They also serve to identify gaps in our knowledge and will help to guide future research.

Limnology and Oceanography↗

Avoidance behavior of juvenile lake sturgeon (Acipenser fulvescens) exposed to Bayluscide 3.2% Granular Sea Lamprey Larvicide

Avoidance of juvenile lake sturgeons < 100 mm in length in response to application of the Bayluscide 3.2% Granular Sea Lamprey Larvicide was assessed. Clear plexiglas columns (107 cm in height, 30.5 cm in diameter) to evaluate the potential for the normally bottom-dwelling fishes to move vertically in the water column to avoid niclosamide dissolving from the Bayluscide granules. Vertical migration of lake sturgeons to > 15 cm off the bottom of the column was considered avoidance. Lake sturgeons began displaying avoidance behaviors within 4 to 8 min after the granules were applied and continued for up to 60 min. After 60 min, most or all of the sturgeons were near the surface in the treated columns. In contrast, little movement above the 15-cm mark was observed at any time in any of the control columns. The results of this study are similar to a previous study where juvenile lake sturgeons > 100 mm in length showed the ability to avoid granular Bayluscide. Taken together, we conclude that juvenile lake sturgeons of any size range can detect and avoid granular Bayluscide applications.

Report↗

Assessing the risk of dreissenid mussel invasion in Texas based on lake physical characteristics and potential for downstream dispersal

ebra mussels ( Dreissena polymorpha ) and quagga mussels ( Dreissena bugensis ) were likely introduced from Ponto-Caspian Eurasia to the Laurentian Great Lakes inadvertently via ballast water release in the 1980s and have since spread across the US, including Texas. Their spread into the state, including reservoirs in both Brazos River and Colorado River basins, has resulted in a need to delimit suitable dreissenid habitat and dispersal potential in Texas. The objective of our research was to assess invasion risk in Texas by 1) predicting distribution of suitable habitat of zebra and quagga mussels using Maxent models; 2) refining lake-specific predictions for present zebra mussels via collection of physicochemical data; and 3) assessing the potential for downstream spread of zebra mussels by applying environmental DNA (eDNA) methods in the Leon and Lampasas Rivers downstream from the invaded Lakes Belton and Stillhouse Hollow, respectively. Maxent models did not predict the occurrence of suitable habitat for quagga mussels within Texas. However, our models accurately identified global zebra mussel habitat (AUC = 0.919), and Bioclim layers representing temperature and precipitation data both strongly influenced predictions. Predicted “hotspots” of suitable zebra mussel habitat in Texas occurred along the Red and Sabine Rivers of north and east Texas, as well as patches of suitable habitat in central Texas between the Colorado and Brazos Rivers and extending inland along the Gulf Coast. Most of the Texas panhandle, west Texas extending toward El Paso, and the Rio Grande valley were predicted to provide poor habitat suitability. Collection of physicochemical data (dissolved oxygen, pH, specific conductance, and temperature on-site as well as laboratory analysis for Ca, N, and P) from zebra mussel invaded lakes and a subset of identified high-risk lakes of North and Central Texas, did not aid predictions. Visual inspection of biplots of the first three components of a principle component analysis, which together accounted for ~80% of data variability, did not reveal separation between invaded and uninvaded lakes, and logistic regression analysis also failed to identify predictive relationships between measured variables and invasion status. Using eDNA analysis, we detected the presence of zebra mussel eDNA at 11 of 12 sites and up to at least 90.7 river km downstream from a pair of infested reservoirs. Rate of positive detection among water samples at each site ranged from 1/5 to 5/5, and within positive water samples, rate of detection among technical replicates ranged from 1/8 to 8/8, suggesting considerable heterogeneity in the zebra mussel eDNA signal in both rivers. Furthermore, no clear spatial pattern in detection rate occurred. Thus, a monitoring strategy that combines traditional sampling (e.g. settlement substrate samplers and microscopy) at sites immediately below a dam, and transitioning to more sensitive eDNA analysis at distances further from the dam may represent the most successful strategy for detection of dreissenid mussel downstream dispersal. Overall, we have demonstrated that while quagga mussels do not appear to represent an invasive threat in Texas, suitable habitat for continuing zebra mussel invasion exists within Texas, and stream and river connections may contribute to their spread. The threat of continued expansion of this poster-child for negative invasive species impacts warrants further prevention efforts, management, and research.

continental United States↗

A comparison of simultaneous plasma, atomic absorption, and iron colorimetric determinations of major and trace constituents in acid mine waters

Sixty-three water samples collected during June to October 1982 from the Leviathan/Bryant Creek drainage basin were originally analyzed by simultaneous multielement direct-current plasma (DCP) atomic-emission spectrometry, flame atomic-absorption spectrometry, graphite-furnace atomic-absorption spectrometry (GFAAS) (thallium only), ultraviolet-visible spectrometry, and hydride-generation atomic-absorption spectrometry.Determinations were made for the following metallic and semi-metallic constituents: AI, As, B, Ba, Be, Bi, Cd, Ca, Cr, Co, Cu, Fe(11), Fe(total), Li, Pb, Mg, Mn, Mo, Ni, K, Sb, Se, Si, Na, Sr, TI, V, and Zn. These samples were re-analyzed later by simultaneous multielement inductively coupled plasma (ICP) atomic-emission spectrometry and Zeeman-corrected GFAAS to determine the concentrations of many of the same constituents with improved accuracy, precision, and sensitivity. The result of this analysis has been the generation of comparative concentration values for a significant subset of the solute constituents. Many of the more recently determined values replace less-than-detection values for the trace metals; others constitute duplicate analyses for the major constituents. The multiple determinations have yielded a more complete, accurate, and precise set of analytical data. They also have resulted in an opportunity to compare the performance of the plasma-emission instruments operated in their respective simultaneous multielement modes. Flame atomic-absorption spectrometry was judged best for Na and K and hydride-generation atomic-absorption spectrometry was judged best for As because of their lower detection limit and relative freedom from interelement spectral effects. Colorimetric determination using ferrozine as the color agent was judged most accurate, precise, and sensitive for Fe. Cadmium, lead, and vanadium concentrations were too low in this set of samples to enable a determination of whether ICP or DCP is a more suitable technique. Of the remaining elements, Ba, Be, Ca, Cr, Mg, Mn, Sr, and Zn have roughly equivalent accuracy, precision, and detection limit by ICP and DCP. Cobalt and Ni were determined to be better analyzed by ICP, because of lower detection limits; B, Cu, Mo, and Si were determined to be better analyzed by DCP, because of relative freedom from interferences. The determination oral by DCP was far more sensitive, owing to the use of a more sensitive wavelength, compared with the ICP. However, there is a very serious potential interference from a strong Ca emission line near the 396.15 nanometer DCP wavelength. Thus, there is no clear choice between the plasma techniques tested, for the determination oral. The ICP and DCP detection limits are typically between 0.001 and 0.5 milligrams per liter in acid mine waters. For those metals best analyzed by ICP and/or DCP, but below these limits, GFAAS is the method of choice because of its relatively greater sensitivity and specificity. Six of the elements were not determined by DCP, ICP or Zeeman-corrected GFAAS, and are not discussed in this report. These elements are: Bi, Fe(11), Li, Sb, Se, and TI.

Water-Resources Investigations Report↗

Effects of the earthquake of March 27, 1964, in the Copper River Basin area, Alaska

The Copper River Basin area is in south-central Alaska and covers 17,800 square miles. It includes most of the Copper River Basin and parts of the surrounding Alaska Range and the Talkeetna, Chugach, and Wrangell Mountains. On March 27, 1964, shortly after 5:36 p.m. Alaska standard time, a great earthquake having a Richter magnitude of about 8.5 struck south-central Alaska. Computations by the U.S. Coast and Geodetic Survey place the epicenter of the main shock at lat 61.1° N. and long 147.7° W., and the hypocenter, or actual point of origin, from 20 to 50 kilometers below the surface. The epicenter is near the western shore of Unakwik Inlet in northern Prince William Sound; it is 30 miles from the closest point within the area of study and 180 miles from the farthest point. Releveling data obtained in 1964 after the earthquake indicates that broad areas of south-central Alaska were warped by uplift and subsidence. The configuration of these areas generally parallels the trend of the major tectonic elements of the region. Presumably a large part of this change took place during and immediately after the 1964 earthquake. The water level in several wells in the area lowered appreciably, and the water in many became turbid; generally, however, within a few days after the earthquake the water level returned to normal and the suspended sediment settled out. Newspaper reports that the Copper River was completely dammed and Tazlina Lake drained proved erroneous. The ice on most lakes was cracked, especially around the margins of the lakes where floating ice broke free from the ice frozen to the shore. Ice on Tazlina, Klutina, and Tonsina Lakes was intensely fractured by waves generated by sublacustrine landslides off the fronts of deltas. These waves stranded large blocks of ice above water level along the shores. River ice was generally cracked in the southern half of the area and was locally cracked in the northern half. In the area of study, the majority of the ground cracks occurred within a radius of 100 miles from the epicenter of the earthquake. Ground cracks formed in flood plains of rivers, in deltas, and along the toes of alluvial fans. They also occurred locally in low terraces adjacent to flood plains, in highway and other fill material, along the margins of lakes, along the faces of steep slopes of river bluffs and hillsides, and in areas cleared of vegetation for several years. The ground cracks were restricted to areas underlain by unconsolidated deposits where one or more of the following conditions existed: (1) permafrost was absent or deep lying, (2) the ground-water table was near the surface, (3) bedrock was relatively deep lying, and (4) slopes were steep. Because the earthquake occurred in March, seasonal frost was present throughout the area. Despite the diversity of local conditions, the origin of most of the ground cracks can be explained by the following mechanisms: (1) lateral extension, caused by materials moving toward an unconfined face such as a lakeshore, river bluff, hillside, or terrace escarpment; (2) horizontal compaction, caused by repeated alternate compression and dilation (in the horizontal direction) of materials in flat-lying areas where there are no unconfined faces; (3) differential vertical compaction, caused by the shaking of materials that vary laterally in thickness or character; and (4) combinations of the above. Snowslides, avalanches, and rockslides were restricted to the mountainous areas surrounding the Copper River Basin. They were especially numerous in the Chugach Mountains which are closest to the epicenter of the earthquake. The large amount of snow and rock debris that has cascaded onto the icefield and glaciers of these mountains, and, probably even more important, the overall disturbance to the ice field will affect the regimen of the glaciers. Most of the damage to manmade structures occurred in the southern half of the area, and, primarily because of the sparsity of population and manmade structures, property damage was not great and no lives were lost.

Alaska↗

Hydrologic responses of streams to mining of the Mulberry coal reserves in eastern Kansas

The U.S. Geological Survey investigated the hydrologic responses of streams with respect to coal-mining activities in the Mulberry coal reserves of Miami, Linn, and Bourbon Counties, eastern Kansas. Results of a low-flow water-quality reconnaissance showed that small streams draining previously coal-mined areas generally have relatively large concentrations of sulfate. Large streams in the study area have been relatively unaffected by coal mining. A comparison of two small drainage basins showed that the basin affected by an active strip mine had less high flow and more low flow because of the regulating effects of sediment ponds. Effluent pumped from the strip mine increased the load of sulfate by 244 percent, the load of dissolved solids by 41 percent, and occasionally transported relatively large concentrations of iron, lead, manganese, and zinc to the receiving stream. Accelerated erosion caused by the exposure and disturbance of soil during clearing and excavation increased the sediment load of the receiving stream by 25 percent even though sediment ponds were installed. (USGS)

Water-Resources Investigations Report↗

Geophysical characterization of subsurface properties relevant to the hydrology of the Standard Mine in Elk Basin, Colorado

Geophysical data were collected at the Standard Mine in Elk Basin near Crested Butte, Colorado, to help improve the U.S. Environmental Protection Agency's understanding of the hydrogeologic controls in the basin and how they affect surface and groundwater interactions with nearby mine workings. These data are discussed in the context of geologic observations at the site, the details of which are provided in a separate report. This integrated approach uses the geologic observations to help constrain subsurface information obtained from the analysis of surface geophysical measurements, which is a critical step toward using the geophysical data in a meaningful hydrogeologic framework. This approach combines the benefit of many direct but sparse field observations with spatially continuous but indirect measurements of physical properties through the use of geophysics. Surface geophysical data include: (1) electrical resistivity profiles aimed at imaging variability in subsurface structures and fluid content; (2) self-potentials, which are sensitive to mineralized zones at this site and, to a lesser extent, shallow-flow patterns; and (3) magnetic measurements, which provide information on lateral variability in near-surface geologic features, although there are few magnetic minerals in the rocks at this site. Results from the resistivity data indicate a general two-layer model in which an upper highly resistive unit, 3 to 10 meters thick, overlies a less resistive unit that is imaged to depths of 20 to 25 meters. The high resistivity of the upper unit likely is attributed to unsaturated conditions, meaning that the contact between the upper and lower units may correspond to the water table. Significant lateral heterogeneity is observed because of the presence of major features such as the Standard and Elk fault veins, as well as highly heterogeneous joint distributions. Very high resistivities (greater than 10 kiloohmmeters) are observed in locations that may correspond to more silicified, lower porosity rock. Several thin (2 to 3 meters deep and up to tens of meters wide) low-resistivity features in the very near surface coincide with observed surface-water drainage features at the site. These are limited to depths less than 3 meters and may indicate surface and very shallow groundwater flowing downhill on top of less permeable bedrock. The data do not clearly point to discrete zones of high infiltration, but these cannot be ruled out given the heterogeneous nature of joints in the shallow subsurface. Disseminated and localized electrically conductive mineralization do not appear to play a strong role in controlling the resistivity values, which generally are high throughout the site. The self-potential analysis highlights the Standard fault vein, the northwest (NW) Elk vein near the Elk portal, and several polymetallic quartz veins. These features contain sulfide minerals in the subsurface that form an electrochemical cell that produces their distinct self-potential signal. A smaller component of the self-potential signal is attributed to relatively moderate topographically driven shallow groundwater flow, which is most prevalent in the vicinity of Elk Creek and to a lesser extent in the area of surface-water drainage below the Level 5 portal. Given the anomalies associated with the electrochemical weathering near the Standard fault vein, it is not possible to completely rule out downward infiltration of surface water and shallow groundwater intersected by the fault, though this is an unlikely scenario given the available data. Magnetic data show little variation, consistent with the mostly nonmagnetic host rocks and mineralization at the site, which is verified by magnetic susceptibility measurements and X-ray diffraction mineralogy data on local rock samples. The contact between the Ohio Creek Member of the Mesaverde Formation and Wasatch Formation coincides with a change in character of the magnetic signature, though

Colorado↗

Impact of precipitation and increasing temperatures on drought trends in eastern Africa

In eastern Africa droughts can cause crop failure and lead to food insecurity. With increasing temperatures, there is an a priori assumption that droughts are becoming more severe. However, the link between droughts and climate change is not sufficiently understood. Here we investigate trends in long-term agricultural drought and the influence of increasing temperatures and precipitation deficits. Using a combination of models and observational datasets, we studied trends, spanning the period from 1900 (to approximate pre-industrial conditions) to 2018, for six regions in eastern Africa in four drought-related annually averaged variables: soil moisture, precipitation, temperature, and evaporative demand ( E 0 ). In standardized soil moisture data, we found no discernible trends. The strongest influence on soil moisture variability was from precipitation, especially in the drier or water-limited study regions; temperature and E 0 did not demonstrate strong relations to soil moisture. However, the error margins on precipitation trend estimates are large and no clear trend is evident, whereas significant positive trends were observed in local temperatures. The trends in E 0 are predominantly positive, but we do not find strong relations between E 0 and soil moisture trends. Nevertheless, the E 0 trend results can still be of interest for irrigation purposes because it is E 0 that determines the maximum evaporation rate. We conclude that until now the impact of increasing local temperatures on agricultural drought in eastern Africa is limited and we recommend that any soil moisture analysis be supplemented by an analysis of precipitation deficit.

Earth Systems Science Dynamics↗

Assessment of the role of bottomland hardwoods in sediment and erosion control

Drainage and clearing of bottomland hardwoods have long been recognized by the U.S. Environmental Protection Agency (EPA) and the U.S. Fish and Wildlife Service (Service) as important impacts of Federal water projects in the lower Mississippi River Valley. More recently, the water quality impacts of such projects (e.g., increases in sediments, nutrients, and pesticides) have also become of concern. In 1984, in an effort to better define problems concerning wetland losses and water degradation, EPA initiated a cooperative project with the Western Energy and Land Use Team (now the National Ecology Research Center) of the Service. Three phases of the project were identified: 1. To collect existing literature and data; 2. To select, develop, and test the utility of methods to quantify the relationships between land use, cover types, soils, hydrology, and water quality (as represented by sediment); and 3. To apply selected methodologies to several sites within the Yazoo Basin of Mississippi to determine the, potential effectiveness of various management alternatives to reduce sediment yield, increase sediment deposition, and improve water quality. Methods development focused on linking a simulation of water and sediment movement to a computerized geographic information system. We had several objectives for the resulting model. We desired that it should: 1. Estimate the importance of bottomland and hardwoods as a cover type that performs the functions of erosion and sediment control, 2. Simulate effects of proportions of ' various cover types and their specific spatial configurations, 3. Be applicable to moderately large spatial areas with minimal site-specific calibration, 4. Simulate spatial patterns of sediment loss-gain over time, and 5. Represent both sediment detachment and transport. While it was recognized that impacts and management alternatives could be sorted roughly into landscape measures and channel measures, the decision was made to focus study efforts mainly on landscape measures. Landscape measures include altered drainage and flooding patterns, altered cover types (e.g., conversion of bottomland hardwoods to agricultural crops, reforestation of cropland to bottomland hardwoods, and creation of riparian buffer strips), altered cropping and tillage patterns, altered routing of water, and creation of buffer strips along wetlands and channel margins. Channel measures include vegetative bank stabilization, grade control structures, and regulation of channel water volume and velocity. During the first year of the study, EPA decided not to fund the third phase of the project. This required considerable rescoping of the project with the result that application of the sediment mobilization, routing, and deposition models to various management alternatives and portions of the Yazoo Basin was somewhat restricted. We believe, however, that this report will provide a good understanding of the various modes of sediment mobilization, transport, and deposition within the Yazoo Basin, as well as of the role of bottomland hardwoods. The model developed in this study could be applied to a variety of management or mitigation alternatives prior to implementation to determine their relative effectiveness. Policy, political, and socio-economic consequences of any proposed management/mitigation practice, however, must ultimately be taken into consideration by those charged with management of water resources within the Yazoo Basin before any practice is implemented. This study makes no effort to judge the feasibility of management alternatives in this regard.

Report↗

Effect of climate change on disease spread in wildlife

A growing body of evidence indicates that climate change alone, or acting synergistically with current anthropogenic threats, is affecting the health of wild populations of aquatic and terrestrial wildlife. Measurable by-products of climate change include elevated atmospheric concentrations of greenhouse gases, higher average global temperatures; variations in global precipitation patterns, rising and warming oceans, altered hydrographs of rivers, and increased mid-continental drying during summer. These consequences affect the terrestrial environment through shifts in phenology, vegetation cover, and fire regimes. Warmer ocean temperatures, increased acidification, rise in sea levels, and reduction in sea ice cover are also leading to widespread ecological changes in marine systems. Wildlife populations face a variety of climate-related pressures, such as changes in animal distribution or density, limitation of food resources, and alteration to critical habitats. The increased potential for emergence and resurgence of diseases that are responsive to environmental conditions also has implications for wildlife populations. Shifts in temperature or other climatic factors may directly affect the incidence of disease in wildlife by altering host-pathogen interactions, promoting vector populations or allowing new ranges for vectors, or reducing development times for parasites. A number of examples from both field and laboratory studies have demonstrated a clear link between warming environments and disease spread. Many climate-related environmental changes also influence wildlife health indirectly. For example, increasing temperatures, in combination with shifts in rainfall and humidity, may aggravate current trends for water resource limitation and habitat degradation or destruction and lead to increased crowding of animal populations, thereby promoting transmission opportunities of pathogens within populations or across species. Although it may be difficult to disentangle the influences of other anthropogenic changes from the direct effects of warming, some ecosystems provide especially useful models for studying climate-related disease spread in wildlife. For example, the effects of climate change on parasite dynamics may be easily observed in the Arctic, where environmental changes are occurring rapidly, anthropogenic influences are relatively limited, and biodiversity is generally low. Marine ecosystems are also undergoing rapid rates of change and may be vulnerable to a variety of natural and anthropogenic perturbations. Although many factors affect the health of organisms in ocean environments, temperature has been clearly linked to an increase in disease prevalence among sessile organisms such as corals. In this chapter, we discuss observed and predicted changes to wildlife health resulting from climate change. Our review will not include all aspects of wildlife health, but will instead focus on established or suspected links between climate drivers and disease spread and discuss examples from the current literature. Here, we define disease spread to include: 1) change in geographical or altitudinal distribution of pathogens, parasites, and vectors and the diseases they cause; 2) change in prevalence or severity of disease; and 3) emergence of novel diseases. Additionally, because wildlife species serve as reservoirs for zoonotic diseases that affect both animals and humans, we include select examples of the effect of climate change on the capacity of wildlife to harbor and spread these disease agents.

Book chapter↗

Temporal evaluation of estrogenic endocrine disruption markers in smallmouth bass (Micropterus dolomieu) reveals seasonal variability in intersex

A reconnaissance project completed in 2009 identified intersex and elevated plasma vitellogenin in male smallmouth bass inhabiting the Missisquoi River, VT. In an attempt to identify the presence and seasonality of putative endocrine disrupting chemicals or other factors associated with these observations, a comprehensive reevaluation was conducted between September 2012 and June 2014. Here, we collected smallmouth bass from three physically partitioned reaches along the river to measure biomarkers of estrogenic endocrine disruption in smallmouth bass. In addition, polar organic chemical integrative samples (POCIS) were deployed to identify specific chemicals associated with biological observations. We did not observe biological differences across reaches indicating the absence of clear point source contributions to the observation of intersex. Interestingly, intersex prevalence and severity decreased in a stepwise manner over the timespan of the project. Intersex decreased from 92.8% to 28.1%. The only significant predictor of intersex prevalence was year of capture, based on logistic regression analysis. The mixed model of fish length and year-of-capture best predicted intersex severity. Intersex severity was also significantly different across late summer and early spring collections indicating seasonal changes in this metric. Plasma vitellogenin and liver vitellogenin Aa transcript abundance in males did not indicate exposure to estrogenic endocrine disrupting chemicals at any of the four sample collections. Analysis of chemicals captured by the POCIS as well as results of screening discrete water samples or POCIS extracts did not indicate the contribution of appreciable estrogenic chemicals. It is possible that unreported changes in land-use activity have ameliorated the problem, and our observations indicate recovery. Regardless, this work clearly emphasizes that single, snap shot sampling for intersex may not yield representative data given that the manifestation of this condition within a population can change dramatically over time.

Vermont↗

Forest cover lessens the impact of drought on streamflow in Puerto Rico

Tropical regions are experiencing high rates of forest cover loss coupled with changes in the volume and timing of rainfall. These shifts can compromise streamflow and water provision, highlighting the need to identify how forest cover influences streamflow generation under variable rainfall conditions. Although rainfall is the key driver of streamflow regimes, the role of forests is less clear, particularly in tropical regions where forest loss is an ongoing risk. Forest cover loss alters evapotranspiration, rainfall infiltration and storage, and may increase stream ecosystem vulnerability to rainfall extremes. Puerto Rico, an island with spatially heterogenous forest cover and a marked geographic rainfall gradient, is projected to experience more frequent droughts and flash flooding. Using 15-minute streamflow data collected between 2005 and 2016 from 20 USGS stream gages and 3-hourly Multi-Source Weighted-Ensemble Precipitation rainfall estimates, we utilized flow-duration curves and linear mixed regression models to examine the role of forest cover in regulating the timing and volume of streamflow. The mixed model approach helps to account for differences in watershed characteristics. We determined the effects of rainfall and forest cover on low and peak flows in Puerto Rican streams, then evaluated changes in these relationships under dry and wet antecedent rainfall conditions. Watersheds with high forest cover had consistently greater low and peak streamflow than deforested ones under all rainfall conditions, although the effect was more marked during wet antecedent conditions, suggesting that peak flow is largely the result of saturation excess overland flow. During dry antecedent rainfall conditions, highly forested watersheds had higher streamflow than deforested ones, suggesting greater hillslope storage and release may also be at play. Our results demonstrate that forest cover generated a net increase in hillslope infiltration and storage and may lessen drought impacts on streamflow in Puerto Rico. Resilience to prolonged drought may be limited by finite water storage potential in this steep, mountainous setting, highlighting maintenance of forest cover as an important water management strategy to increase infiltration.

Puerto Rico↗

Geologic history of sea water: An attempt to state the problem

Paleontology and biochemistry together may yield fairly definite information, eventually, about the paleochemistry of sea water and atmosphere. Several less conclusive lines of evidence now available suggest that the composition of both sea water and atmosphere may have varied somewhat during the past; but the geologic record indicates that these variations have probably been within relatively narrow limits. A primary problem is how conditions could have remained so nearly constant for so long. It is clear, even from inadequate data on the quantities and compositions of ancient sediments, that the more volatile materials—H 2 O, CO 2 , Cl, N, and S— are much too abundant in the present atmosphere, hydrosphere, and biosphere and in ancient sediments to be explained, like the commoner rock-forming oxides, as the products of rock weathering alone. If the earth were once entirely gaseous or molten, these “excess” volatiles may be residual from a primitive atmosphere. But if so, certain corollaries should follow about the quantity of water dissolved in the molten earth and the expected chemical effects of a highly acid, primitive ocean. These corollaries appear to be contradicted by the geologic record, and doubt is therefore cast on this hypothesis of a dense primitive atmosphere. It seems more probable that only a small fraction of the total “excess” volatiles was ever present at one time in the early atmosphere and ocean. Carbon plays a significant part in the chemistry of sea water and in the realm of living matter. The amount now buried as carbonates and organic carbon in sedimentary rocks is about 600 times as great as that in today's atmosphere, hydrosphere, and biosphere. If only 1/100 of this buried carbon were suddenly added to the present atmosphere and ocean, many species of marine organisms would probably be exterminated. Furthermore, unless CO 2 is being added continuously to the atmosphere-ocean system from some source other than rock weathering, the present rate of its subtraction by sedimentation would, in only a few million years, cause brucite to take the place of calcite as a common marine sediment. Apparently, the geologic record shows no evidence of such simultaneous extinctions of many species nor such deposits of brucite. Evidently the amount of CO 2 in the atmosphere and ocean has remained relatively constant throughout much of the geologic past. This calls for some source of gradual and continuous supply, over and above that from rock weathering and from the metamorphism of older sedimentary rocks. A clue to this source is afforded by the relative amounts of the different “excess” volatiles. These are similar to the relative amounts of the same materials in gases escaping from volcanoes, fumaroles, and hot springs and in gases occluded in igneous rocks. Conceivably, therefore, the hydrosphere and atmosphere may have come almost entirely from such plutonic gases. During the crystallization of magmas, volatiles such as H 2 O and CO 2 accumulate in the remaining melt and are largely expelled as part of the final fractions. Volcanic eruptions and lava flows have brought volatiles to the earth's surface throughout the geologic past; but intrusive rocks are probably a much more adequate source of the constituents of the atmosphere and hydrosphere. Judged by the thermal springs of the United States, hot springs (carrying only 1 per cent or less of juvenile matter) may be the principal channels by which the “excess” volatiles have escaped from cooling magmas below. This mechanism fails to account for a continuous supply of volatiles unless it also provides for a continuous generation of new, volatile-rich magmas. Possibly such local magmas form by a continuous process of selective fusion of subcrustal rocks, to a depth of several hundred kilometers below the more mobile areas of the crust. This would imply that the volume of the ocean has grown with time. On this point, geologic evidence permits differences of interpretation; the record admittedly does not prove, but it seems consistent with, an increasing growth of the continental masses and a progressive sinking of oceanic basins. Perhaps something like the following mechanism could account for a continuous escape of volatiles to the earth's surface and a relatively uniform composition of sea water through much of geologic time: (1) selective fusion of lower-melting fractions from deep-seated, nearly anhydrous rocks beneath the unstable continental margins and geosynclines; (2) rise of these selected fractions (as granitic and hydrous magmas) and their slow crystallization nearer the surface; (3) essentially continuous isostatic readjustment between the differentiating continental masses and adjacent ocean basins; and (4) renewed erosion and sedimentation, with resulting instability of continental margins and mountainous areas and a new round of selective fusion below.

Geological Society of America Bulletin↗

csa2sac—A program for computing discharge from continuous slope-area stage data

Introduction Continuous Slope-Area (CSA) gages were developed by the Arizona Water Science Center to enable the estimation of hydrographs when direct measurements of discharge cannot be made (Smith and others, 2010). CSA gages extend standard U.S. Geological Survey (USGS) methods for determining peak discharges to mid and high flows over a hydrograph computed at regular intervals with indirect measurement methods (Benson and Dalrymple, 1967; Dalrymple and Benson, 1967). CSA gages combine continuous stage records at two or more (typically three or four) cross sections with crosssection surveys and estimates of channel roughness to compute discharge over a range of flows. With standard indirect methods of determining peak discharge, water-surface elevation in the study reach at the peak flow is estimated from surveys of debris associated with the peak-flow water line. With CSA gages, stages are continuously measured at the cross sections, at regular and synchronized intervals (typically 5 minutes) over a flow event, and discharge can be calculated at each interval. Calculation of discharge using indirect methods has been automated with the slope-area computation (SAC) program (Fulford, 1994). SAC is a widely used program within the USGS; it is easily run and displays output in a clear and convenient format, which includes flags that alert the user to shortcomings in the calculation. Use of SAC has been facilitated by SACGUI (Bradley, 2012; SACGUI uses a version of SAC called SAC7), a user interface that directly reads and displays survey data, allows for specification of water-surface slope and channel roughness, writes the input file for SAC7, runs SAC7, and displays SAC7 output. csa2sac is a program (appendix 1) that repeatedly runs SAC7 using stage data and a SAC7 input template file to compute the discharge at CSA gages. It is written in the C programming language, and is compatible with 64-bit Windows operating systems. The program reads a SAC7 input file and a file containing stage-data time series. It writes a new version of the SAC7 input file with the stage data for one time step, runs SAC7, then extracts computed discharges from the SAC7 output file and collates the discharges and stages to a separate file. It repeats these steps for each time interval in the stage file to produce a discharge time series from the stage data. csa2sac has been tested with two, three, four, and six cross sections and found to operate successfully. By running SAC7, csa2sac maintains consistency and comparability of both discharges calculated from CSA gages and of standard USGS methods for computing discharges indirectly. Brown and Metcalfe (2014) have made available alternative software for producing CSA discharges. In addition to csa2sac, the SAC7 program is required. It is the same as the original SAC program, except that it is compiled for 64-bit Windows operating systems and has a slightly different command line input. It is available online (http://water.usgs.gov/software/SAC/) as part of the SACGUI installation program. The program name, &ldquo;SAC7.exe,&rdquo; is coded into csa2sac, and must not be changed.

Open-File Report↗