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USGS2011

Dynamically downscaled climate simulations over North America: Methods, evaluation, and supporting documentation for users

We have completed an array of high-resolution simulations of present and future climate over Western North America (WNA) and Eastern North America (ENA) by dynamically downscaling global climate simulations using a regional climate model, RegCM3. The simulations are intended to provide long time series of internally consistent surface and atmospheric variables for use in climate-related research. In addition to providing high-resolution weather and climate data for the past, present, and future, we have developed an integrated data flow and methodology for processing, summarizing, viewing, and delivering the climate datasets to a wide range of potential users. Our simulations were run over 50- and 15-kilometer model grids in an attempt to capture more of the climatic detail associated with processes such as topographic forcing than can be captured by general circulation models (GCMs). The simulations were run using output from four GCMs. All simulations span the present (for example, 1968-1999), common periods of the future (2040-2069), and two simulations continuously cover 2010-2099. The trace gas concentrations in our simulations were the same as those of the GCMs: the IPCC 20th century time series for 1968-1999 and the A2 time series for simulations of the future. We demonstrate that RegCM3 is capable of producing present day annual and seasonal climatologies of air temperature and precipitation that are in good agreement with observations. Important features of the high-resolution climatology of temperature, precipitation, snow water equivalent (SWE), and soil moisture are consistently reproduced in all model runs over WNA and ENA. The simulations provide a potential range of future climate change for selected decades and display common patterns of the direction and magnitude of changes. As expected, there are some model to model differences that limit interpretability and give rise to uncertainties. Here, we provide background information about the GCMs and the RegCM3, a basic evaluation of the model output and examples of simulated future climate. We also provide information needed to access the web applications for visualizing and downloading the data, and give complete metadata that describe the variables in the datasets.

Open-File Report↗

USGS1999

Traveltimes along Clear Creek and selected tributaries upstream from Golden, Colorado, 1996-97

Increased traffic along mountainous stretches of Interstate Highway 70, U.S. Highway 40, and U.S. Highway 6 in Colorado has resulted in a corresponding increase in the movement of hazardous materials. The proximity of Clear Creek and its tributaries to these highways places downstream water users at risk in the event of an accidental hazardous-material release. A traveltime study was performed on two reaches of Clear Creek and two of its tributaries to provide the necessary information to allow downstream water managers to protect water supplies in the event of a hazardous-material release. The information also can be used by hazardous-materialresponse teams to intercept contaminants as they move downstream. This report summarizes the methods and findings of the traveltime study. Traveltime measurements were made using rhodamine-WT dye as a tracer in two reaches of Clear Creek and two Clear Creek tributaries in Clear Creek and Jefferson Counties, Colorado. The reaches were Clear Creek from the town of Berthoud Falls to the city limits of Golden; Clear Creek from the eastern edge of the Loveland Basin Ski Area parking lot to the town of Georgetown; the headwaters of two Clear Creek tributaries near Loveland Pass to the Loveland Valley Ski Area; and two unnamed tributaries of Hoop Creek (a tributary of Clear Creek) near Berthoud Pass to the confluence with the West Fork of Clear Creek. Measurements were made at three times of the year to obtain data from different flow conditions. Traveltime and average velocities were determined for each stream reach. During high flow, dye-cloud leading-edge traveltimes ranged from about 0.6 hour along the Loveland Pass to the Loveland Valley Ski Area drainage to about 8.8 hours between Berthoud Falls and Golden. During low flow, leading-edge traveltimes ranged from about 2.6 hours along the same drainage from Loveland Pass to about 28.6 hours between Berthoud Falls and Golden. Average velocity between the Loveland Pass sites ranged from about 1.3 miles per hour during high flow to about 0.3 mile per hour during low flow. Average velocities between Berthoud Falls and Golden ranged from about 4.4 miles per hour during high flow to about 1.3 miles per hour during low flow. A curve-fitting program was used to fit Lorentz and Gaussian distributions to the data generated from the traveltime measurements. Because discrete (not continuous) traveltime measurements were made, an estimate of the actual time of the leading edge, peak, and trailing edge needed to be determined from the sample data. The curve-fitting program provided the means to calculate the timing of events (leading edge, peak, and trailing edge) that were not precisely measured. Calculated leading-edge, peak, and trailing-edge times were used to generate a series of graphs for each study reach. Traveltime estimation tables were generated from the data for a range of Clear Creek discharges. Because of the high variability of discharge within the basin, the Lawson surface-water gage located near the center of the basin was used as the reference location. Discharge measurements for the Lawson gage are available on the Internet, which can be accessed by most hazardous-material-team dispatchers. Traveltimes determined during the individual studies were plotted against the corresponding discharge at the reference location. A curve-fitting program was used to generate a series of curves, which were used to produce traveltime estimation tables.

Colorado↗

USGS2016

Sediment data collected in 2014 from Barnegat Bay, New Jersey

In response to the 2010 Governor’s Action Plan to clean up the Barnegat Bay–Little Egg Harbor (BBLEH) estuary in New Jersey, the U.S. Geological Survey (USGS) partnered with the New Jersey Department of Environmental Protection in 2011 to begin a multidisciplinary research project to understand the physical controls on water quality in the bay. Between 2011 and 2013, USGS scientists mapped the geological and morphological characteristics of the seafloor of the BBLEH estuary using a suite of geophysical tools. However, this mapping effort included only surficial characterization of bay sediments; to verify the sub-surface geophysical data, sediment cores were required. This report serves as an archive of sedimentologic data from 18 vibracores collected from Barnegat Bay between May and August of 2014 by the U.S. Department of Agriculture Natural Resources Conservation Service (NRCS) on behalf of the USGS. The vibracores were collected in conjunction with an ongoing NRCS subaqueous soil survey for the BBLEH estuary. The data presented in this report, including descriptive core logs, core photographs, processed grain-size data, and Geographic Information System (GIS) data files with accompanying formal Federal Geographic Data Committee metadata, can be viewed or downloaded from the Data Products and Downloads page.

New Jersey↗

USGS1978

Evaluation and design of a streamflow-data network in Washington

A method of evaluating the transferability of streamflow information by regional regression analysis was applied in Washington to several streamflow variables. The annual mean and annual standard deviation were chosen to represent the development potential of the water resource, while the mean, standard deviation, and the 50-year recurrence interval of the annual flood series were chosen to represent flood potential. Low-flow characteristics were not used because of the inability to model them by regression analysis. Ephemeral streams in the vicinity of the Columbia Plateau were ignored for the same reason. The results of the study indicate that the standard errors of estimate of the regression relations were good approximations of the medians of the Bayesian distributions of estimates of inaccuracy and that for the streamflow variables used in the study, little if any improvement can be expected in the regression relations by the collection of additional streamflow data. Improved transferability of streamflow information for these variables has a prerequisite of more accurate information-transfer models. It is therefore recommended that the future streamflow-data network contain only those streamflow stations needed to provide data for (1) the design or operation of water-resources projects, (2) the investigation and study of water resources, and (3) monitoring long-term trends in streamflow.

Washington↗

USGS2006

Bedrock Geologic Map of New Hampshire, a Digital Representation of Lyons and Others 1997 Map and Ancillary Files

The New Hampshire Geological Survey collects data and performs research on the land, mineral, and water resources of the State, and disseminates the findings of such research to the public through maps, reports, and other publications. The Bedrock Geologic Map of New Hampshire, by John B. Lyons, Wallace A. Bothner, Robert H. Moench, and James B. Thompson, was published in paper format by the U.S. Geological Survey (USGS) in 1997. The online version of this CD contains digital datasets of the State map that are intended to assist the professional geologist, land-use planners, water resource professionals, and engineers and to inform the interested layperson. In addition to the bedrock geology, the datasets include geopolitical and hydrologic information, such as political boundaries, quadrangle boundaries, hydrologic units, and water-well data. A more thorough explanation for each of these datasets may be found in the accompanying metadata files. The data are spatially referenced and may be used in a geographic information system (GIS). ArcExplorer, the Environmental Systems Research Institute's (ESRI) free GIS data viewer, is available at http://www.esri.com/software/arcexplorer. ArcExplorer provides basic functions that are needed to harness the power and versatility of the spatial datasets. Additional information on the viewer and other ESRI products may be found on the ArcExplorer website. Although extensive review and revisions of the data have been performed by the USGS and the New Hampshire Geological Survey, these data represent interpretations made by professional geologists using the best available data, and are intended to provide general geologic information. Use of these data at scales larger than 1:250,000 will not provide greater accuracy. The data are not intended to replace site-specific or specific-use investigations. The U.S. Geological Survey, New Hampshire Geological Survey, and State of New Hampshire make no representation or warranty, expressed or implied, regarding the use, accuracy, or completeness of the data presented herein, or from a map printed from these data; nor shall the act of distribution constitute any such warranty. The New Hampshire Geological Survey disclaims any legal responsibility or liability for interpretations made from the map, or decisions based thereon. For more information on New Hampshire Geological Survey programs please visit the State's website at http://des.nh.gov/Geology/. New Hampshire Geographically Referenced Analysis and Information Transfer System (NH GRANIT) provides access to statewide GIS (http://www.granit.unh.edu/). Questions about this CD or about other datasets should be directed to the New Hampshire Department of Environmental Services.

Data Series↗

USGS2020

Sediments and the sea floor of the continental shelves and coastal waters of the United States—About the usSEABED integrated sea-floor-characterization database, built with the dbSEABED processing system

Since the second half of the 20th century, there has been an increase in scientific interest, research effort, and information gathered on the geologic sedimentary character of the continental margins of the United States. Data and information from thousands of sources have increased our scientific understanding of the character of the margin surface, but rarely have those data been combined and integrated. Initially, the U.S. Geological Survey (USGS), in cooperation with the Institute of Arctic and Alpine Research at the University of Colorado Boulder, created the usSEABED database to provide surficial sea-floor-characterization data for USGS assessments of marine-based aggregates and for studies of sea-floor habitat. Since then, the USGS has continued to build up the database as a nationwide resource for many uses and applications. Previously published data derived from the usSEABED database have been released as three USGS data series publications containing data covering the U.S. Atlantic margin, the Gulf of Mexico and Caribbean regions, and the Pacific coast. An updated USGS data release unifies the three publications, incorporates additional data and sources including data from Alaska, Hawaii, and U.S. overseas territories, and provides revised output files that fix known errors and add known or inferred sampling dates. This report accompanies the data release and contains information on the methodology and products of the usSEABED database.

Open-File Report↗

USGS2016

Phosphorus in sediment in the Kent Park Lake watershed, Johnson County, Iowa, 2014–15

Phosphorus data were collected from the Kent Park Lake watershed in Johnson County, Iowa, in 2014 and 2015 to obtain information to assist in the management of the water quality in the lake. Phosphorus concentrations were measured for sediment from several ponds in the watershed and sediment deposited in the lake. The first set of samples was collected in 2014 to understand phosphorus in several potential sources to the lake and the spatial variability in lake sediments. Phosphorus concentrations ranged from 68 to 380 milligrams per kilogram in lake sediment and from 57 to 220 milligrams per kilogram in sedimentation and dredge spoil ponds. Additional samples were collected in 2015 to determine how phosphorus concentrations vary with depth in the lake sediment. Phosphorus concentrations generally decreased with increasing depth within the lake sediment. In 2015, total phosphorus concentrations in lake sediment ranged from 50 to 340 milligrams per kilogram.

Iowa↗

USGS2007

Data for a regional approach to the development of an effects-based nutrient criterion for wadable streams

States are required by the U.S. Environmental Protection Agency to establish nutrient criteria (concentrations of nutrients above which water quality is deteriorated) as part of their water-quality regulations. A study of wadable streams in the Mid-Atlantic Region was undertaken by the U.S. Geological Survey, the U.S. Environmental Protection Agency, and the Maryland Department of the Environment, with assistance from the Pennsylvania Department of Environmental Protection, to help define current concentrations of nutrients in streams with the goal of associating different nutrient-concentration levels with their effects on water quality. During the summers of 2004 and 2005, diel concentrations of dissolved oxygen, nutrient concentrations, concentrations of chlorophyll a in attached algae, and algal-community structure were measured at 46 stream sites in Maryland, Pennsylvania, Virginia, and West Virginia. Data from this work can be used by individual state agencies to define nutrient criteria. Quality-control measures for the study included submitting blank samples, duplicate samples, and reference samples for analysis of nutrients, total organic carbon, chlorophyll a, and algal biomass. Duplicate and split samples were submitted for periphyton identifications. Three periphyton split samples were sent to an independent lab for a check on periphyton identifications. Neither total organic carbon nor nutrients were detected in blank samples. Concentrations of nutrients and total organic carbon were similar for most duplicate sample pairs, with the exception of a duplicate pair from Western Run. Concentrations of ammonia plus organic nitrogen for this duplicate pair differed by as much as 34 percent. Total organic carbon for the duplicate pair from Western Run differed by 102 percent. The U.S. Geological Survey National Water Quality Laboratory performance on the only valid reference sample submitted was excellent; the relative percent difference values were no larger than 5 percent for any constituent analyzed. For periphyton identifications, duplicate samples had Jaccard Coefficient of Community values slightly greater than 0.5. This indicates the periphyton sampling protocol used provided a sample that was only moderately reproducible. Jaccard Coefficients for three periphyton samples split between two independent labs were 0.2, 0.11, and 0.08. These very low values suggest a poor concurrence on species identifications performed by the two labs. As a result of these quality-control samples, the slides prepared for diatom identifications were sent to the Academy of Natural Sciences for re-identification. Caution is urged when interpreting periphyton-community information from this study. This report and the raw data from the study are available online at http://pubs.usgs.gov/ds257

Maryland, Pennsylvania, Virginia, West Virginia↗

USGS2013

Modeling for the SAFRR Tsunami Scenario-generation, propagation, inundation, and currents in ports and harbors: Chapter D in The SAFRR (Science Application for Risk Reduction) Tsunami Scenario

This U.S. Geological Survey (USGS) Open-File report presents a compilation of tsunami modeling studies for the Science Application for Risk Reduction (SAFRR) tsunami scenario. These modeling studies are based on an earthquake source specified by the SAFRR tsunami source working group (Kirby and others, 2013). The modeling studies in this report are organized into three groups. The first group relates to tsunami generation. The effects that source discretization and horizontal displacement have on tsunami initial conditions are examined in section 1 (Whitmore and others). In section 2 (Ryan and others), dynamic earthquake rupture models are explored in modeling tsunami generation. These models calculate slip distribution and vertical displacement of the seafloor as a result of realistic fault friction, physical properties of rocks surrounding the fault, and dynamic stresses resolved on the fault. The second group of papers relates to tsunami propagation and inundation modeling. Section 3 (Thio) presents a modeling study for the entire California coast that includes runup and inundation modeling where there is significant exposure and estimates of maximum velocity and momentum flux at the shoreline. In section 4 (Borrero and others), modeling of tsunami propagation and high-resolution inundation of critical locations in southern California is performed using the National Oceanic and Atmospheric Administration’s (NOAA) Method of Splitting Tsunami (MOST) model and NOAA’s Community Model Interface for Tsunamis (ComMIT) modeling tool. Adjustments to the inundation line owing to fine-scale structures such as levees are described in section 5 (Wilson). The third group of papers relates to modeling of hydrodynamics in ports and harbors. Section 6 (Nicolsky and Suleimani) presents results of the model used at the Alaska Earthquake Information Center for the Ports of Los Angeles and Long Beach, as well as synthetic time series of the modeled tsunami for other selected locales in southern California. Importantly, section 6 provides a comparison of the effect of including horizontal displacements at the source described in section 1 and differences in bottom friction on wave heights and inundation in the Ports of Los Angeles and Long Beach. Modeling described in section 7 (Lynett and Son) uses a higher order physical model to determine variations of currents during the tsunami and complex flow structures such as jets and eddies. Section 7 also uses sediment transport models to estimate scour and deposition of sediment in ports and harbors—a significant effect that was observed in southern California following the 2011 Tohoku tsunami. Together, all of the sections in this report form the basis for damage, impact, and emergency preparedness aspects of the SAFRR tsunami scenario. Three sections of this report independently calculate wave height and inundation results using the source specified by Kirby and others (2013). Refer to figure 29 in section 3, figure 52 in section 4, and figure 62 in section 6. All of these results are relative to a mean high water (MHW) vertical datum. Slight differences in the results are observed in East Basin of the Port of Los Angeles, Alamitos Bay, and the Seal Beach National Wildlife Refuge. However, given that these three modeling efforts involved different implementations of the source, different numerical wave propagation and runup models, and slight differences in the digital elevation models (DEMs), the similarity among the results is remarkable.

California↗

USGS1998

Evaluation of geophysical logs and video surveys in boreholes adjacent to the Berkley Products Superfund Site, West Cocalico Township, Lancaster County, Pennsylvania

Between February 1998 and April 1998, geophysical logs were collected in nine boreholes adjacent to the Berkley Products Superfund Site, West Cocalico Township, Lancaster County, Pa. Video surveys were conducted on four of the nine boreholes. The boreholes range in depth from 320 to 508 feet below land surface, are completed open holes, have ambient vertical flow of water, and penetrate a series of interbedded siltstone, sandstone, and conglomerate units. The purpose of collecting geophysical-log data was to help determine horizontal and vertical distribution of contaminated ground water migrating from known or suspected sources and to aid in the placement of permanent borehole packers. The primary contaminants were derived from paint waste that included pigment sludges and wash solvents. The chlorinated volatile organic compounds probably originated from the wash solvents. Caliper logs and video surveys were used to locate fractures; inflections on fluid-resistivity and fluid-temperature logs were used to locate possible water-bearing fractures. Heatpulse-flowmeter measurements were used to verify the locations of water-producing or water-receiving zones and to measure rates of flow between water-bearing fractures. Single-point-resistance and natural-gamma logs provided information on stratigraphy. After interpretation of geophysical logs, video surveys, and driller's logs, permanent multiple-packer systems were installed in each borehole to obtain depth specific water samples from one or more water-bearing fractures in each borehole.

Pennsylvania↗

USGS2021

Nearshore water quality and coral health indicators along the west coast of the Island of Hawaiʻi, 2010–2014

Coral reefs worldwide are experiencing rapid degradation in response to climate and land-use change, namely effects of warming sea-surface temperatures, contaminant runoff, and overfishing. Extensive coral bleaching caused by the steady rise of sea-surface temperatures is projected to increase, but our understanding and ability to predict where corals may be most resilient to this effect is limited owing to a lack of knowledge of nearshore habitat conditions and the role of compromised coral health in preconditioning bleaching vulnerability. On high islands and most atolls, fresh to brackish groundwater discharges to the coast through the beach face and seafloor, where it mixes with marine waters and commonly creates cool estuarine nearshore waters that are important to wildlife and ecosystem services that benefit people. Here, we summarize results of a study to evaluate the ecosystem services and effects of groundwater on coral reef health and the potential role of groundwater to maintain cold-water refugia that can buffer corals from thermal stress during temperature maxima. Across 75 kilometers of the west coastline of the Island of Hawaiʻi, paired time-series and discrete measurements of water quality, coral-community and colony size structures, and coral health indicators, including bleaching, at 33 stations grouped into 12 study areas were made from July 2010 to December 2013. The results show that nearshore water temperatures are depressed by groundwater across extensive areas of the nearshore. Persistent cold-water refugia ranging from 1 to 5 degrees Celsius below surrounding marine water temperatures are shown to be associated with identified groundwater inputs. Significant correlations were found between metrics of coral health and water temperature. Because areas of temperature refugia were notable along the west coast of the Island of Hawaiʻi and are identified by ecologists as increasingly important to valued wildlife, improved understanding of groundwater flux to the long-term resilience of coral reefs is likely important. In particular, evaluating the extent that the magnitude and timing of groundwater discharge across the nearshore mitigate thermal bleaching stress may help inform the fate of coral reefs projected to experience rising sea-surface temperatures worldwide.

Hawaii↗

USGS1903

Instructions relating to the work of the United States Geological Survey to take effect May 1, 1903

On March 3, 1900, a series of instructions relating to the work of the topographic branch of the Geological Survey was approved and published in pamphlet form. The extensive use of this publication by those engaged in topographic work and others exhausted the first edition and seemed to justify its enlargement so that it would cover the field and office work of the Survey generally. The instructions now published have been adopted after full consultation and consideration, so that they may be regarded as embodying the latest and best information on the various subjects treated. They should be carefully studied by the members of the Geological Survey, as a strict compliance with all the provisions is expected. These "Instructions" are supplementary to the manual of "Regulations," third edition, 1903.

Report↗

USGS2009

Benthic flux of nutrients and trace metals in the northern component of San Francisco Bay, California

Two sets of sampling trips were coordinated in late summer 2008 (weeks of July 8 and August 6) to sample the interstitial and overlying bottom waters at 10 shallow locations (9 sites <3 meters in depth) within the northern component of the San Francisco Bay/Delta (herein referred to as North Bay). The work was performed to better understand sources of biologically reactive solutes (namely, dissolved macronutrients and trace metals) that may affect the base of the food web in this part of the estuary. A nonmetallic pore-water profiler was used to obtain the first centimeter-scale estimates of the vertical solute-concentration gradients for diffusive-flux determinations. This study, performed in collaboration with scientists from San Francisco State University?s Romberg Tiburon Center for Environmental Studies, provides information to assist in developing and refining management strategies for the Bay/Delta system and supports efforts to monitor changes in food-web structure associated with regional habitat modifications directed by the California Bay-Delta Authority. On July 7, 2008, and August 5, 2008, pore-water profilers were successfully deployed at six North Bay sites per trip to measure the concentration gradient of dissolved macronutrients and trace metals near the sediment-water interface. Only two of the sites (433 and SSB009 within Honker Bay) were sampled in both series of profiler deployments. At each sampling site, profilers were deployed in triplicate, while discrete samples and dataloggers were used to collect ancillary data from both the water column and benthos to help interpret diffusive-flux measurements. Benthic flux of dissolved (0.2-micron filtered) inorganic phosphate (that is, soluble reactive phosphorus (SRP)) ranged from negligible levels (-0.003?0.005 millimole per square meter per day (mmole m-2d-1) at Site 4.1 outside Honker Bay) to 0.060?0.006 mmole m-2d-1 near the northern coast of Brown?s Island. Except for the elevated flux at Browns Island, the benthic flux of soluble reactive phosphorus (SRP) was consistently: (1) lower than previously reported for South Bay sites, (2) an order of magnitude lower than oligotrophic Coeur d?Alene Lake, (3) two orders of magnitude lower than determined for eutrophic Upper Klamath Lake, and (4) an order of magnitude or more lower than the estimated summer riverine inputs for SRP (900 to 1,300 kilograms of phosphorous per day (kg-P d-1)). In contrast to fluxes reported for the South Bay, nitrate fluxes were consistently negative (that is, drawn from the water column into the sediment), except for one site with statistically insignificant nitrate fluxes (Site 409 within Suisun Bay). The most negative nitrate flux (-7.3?0.1 mmole m-2d-1) was observed within Grizzly Bay (Site 416). Observed nitrate fluxes bracketed the estimated summer fluvial flux of nitrate (3,500 to 5,000 kg-N d-1). With the exception of the two Grizzly Bay sites (416 and 417), the consistently positive benthic flux of ammonia generally counteracted the negative flux of nitrate to yield a net balance of dissolved inorganic nitrogen. Ammonia benthic fluxes extrapolated for Suisun Bay ranged from 320 kg-N d-1 (Site SSB009 near the entrance to Honker Bay) to 1,900 kg-N d-1 (Montezuma Island). These values represent a significant ammonia source to the water column relative to summer riverine inputs (approximately 400 to 600 kg-N d-1). Dissolved silica also displayed a consistently positive benthic flux, except for Site 409 within Suisun Bay, which showed insignificant fluxes (also insignificant for nitrate and SRP). As with the nitrate fluxes, Grizzly Bay and Browns Island sites yielded the highest dissolved silica fluxes (1.3?1.2 to 2.5?0.6 mmole m-2d-1, respectively). These initial diffusive-flux estimates are greater than those measured in the South Bay using core-incubation experiments, which include bioturbation and bioirrigation effects, but they are nevertheless probably one to t

Open-File Report↗

USGS2000

Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems

The desire of resource managers, risk assessors, and the general public to better understand the consequences of environmental contamination has produced a strong and growing need for information on the effects of contaminants on populations and groups of species, and over moderate to large areas of land or water. However, the problems associated with research involving populations and groups of species or large and complex geographic areas, especially in terrestrial environments, are well known within the scientific community. With the previous thoughts in mind, an interactive symposium was held at the University of Maryland in October 1998. The purpose of the symposium was to review and critically evaluate our understanding of the effects of contaminants on terrestrial vertebrates at levels of organization above that of the individual. Invited background and technical presentations provided a common baseline of information for symposium participants. Discussion groups were then asked to critically evaluate the topics of two technical sessions. Several presentations of recent or ongoing research provided participants with examples of current approaches to assessments of the effects of contaminants on terrestrial vertebrates at the population or higher level of organization. The book consists of 10 chapters written by presenters at the symposium and three chapters conveying the reports of discussion group.

SETAC Special Publications Series.↗

USGS2006

A database of lotic invertebrate traits for North America

The assessment and study of stream communities may be enhanced if functional characteristics such as life-history, habitat preference, and reproductive strategy were more widely available for specific taxa. Species traits can be used to develop these functional indicators because many traits directly link functional roles of organisms with controlling environmental factors (for example, flow, substratum, temperature). In addition, some functional traits may not be constrained by taxonomy and are thus applicable at multiple spatial scales. Unfortunately, a comprehensive summary of traits for North American invertebrate taxa does not exist. Consequently, the U.S. Geological Survey's National Water-Quality Assessment Program in cooperation with Colorado State University compiled a database of traits for North American invertebrates. A total of 14,127 records for over 2,200 species, 1,165 genera, and 249 families have been entered into the database from 967 publications, texts and reports. Quality-assurance procedures indicated error rates of less than 3 percent in the data entry process. Species trait information was most complete for insect taxa. Traits describing resource acquisition and habitat preferences were most frequently reported, whereas those describing physiological tolerances and reproductive biology were the least frequently reported in the literature. The database is not exhaustive of the literature for North American invertebrates and is biased towards aquatic insects, but it represents a first attempt to compile traits in a web-accessible database. This report describes the database and discusses important decisions necessary for identifying ecologically relevant, environmentally sensitive, non-redundant, and statistically tractable traits for use in bioassessment programs.

Data Series↗

USGS2015

Digital representation of oil and natural gas well pad scars in southwest Wyoming: 2012 update

The recent proliferation of oil and natural gas energy development in the Greater Green River Basin of southwest Wyoming has accentuated the need to understand wildlife responses to this development. The location and extent of surface disturbance that is created by oil and natural gas well pad scars are key pieces of information used to assess the effects of energy infrastructure on wildlife populations and habitat. A digital database of oil and natural gas pad scars had previously been generated from 1-meter (m) National Agriculture Imagery Program imagery (NAIP) acquired in 2009 for a 7.7-million hectare (ha) (19,026,700 acres) region of southwest Wyoming. Scars included the pad area where wellheads, pumps, and storage facilities reside and the surrounding area that was scraped and denuded of vegetation during the establishment of the pad. Scars containing tanks, compressors, the storage of oil and gas related equipment, and produced-water ponds were also collected on occasion. This report updates the digital database for the five counties of southwest Wyoming (Carbon, Lincoln, Sublette, Sweetwater, Uinta) within the Wyoming Landscape Conservation Initiative (WLCI) study area and for a limited portion of Fremont, Natrona, and Albany Counties using 2012 1-m NAIP imagery and 2012 oil and natural gas well permit information. This report adds pad scars created since 2009, and updates attributes of all pad scars using the 2012 well permit information. These attributes include the origination year of the pad scar, the number of active and inactive wells on or near each pad scar in 2012, and the overall status of the pad scar (active or inactive). The new 2012 database contains 17,404 pad scars of which 15,532 are attributed as oil and natural gas well pads. Digital data are stored as shapefiles projected to the Universal Transverse Mercator (zones 12 and 13) coordinate system. These data are available from the U.S. Geological Survey (USGS) at http://dx.doi.org/10.3133/ds934.

Wyoming↗

USGS2013

A compilation of U.S. Geological Survey pesticide concentration data for water and sediment in the Sacramento–San Joaquin Delta region: 1990–2010

Beginning around 2000, abundance indices of four pelagic fishes (delta smelt, striped bass, longfin smelt, and threadfin shad) within the San Francisco Bay and Sacramento–San Joaquin Delta began to decline sharply (Sommer and others, 2007). These declines collectively became known as the pelagic organism decline (POD). No single cause has been linked to this decline, and current theories suggest that combinations of multiple stressors are likely to blame. Contaminants (including current-use pesticides) are one potential stressor being investigated for its role in the POD (Anderson, 2007). Pesticide concentration data collected by the U.S. Geological Survey (USGS) at multiple sites in the delta region over the past two decades are critical to understanding the potential effects of current-use pesticides on species of concern as well as the overall health of the delta ecosystem. In April 2010, a compilation of contaminant data for the delta region was published by the State Water Resources Control Board (Johnson and others, 2010). Pesticide occurrence was the major focus of this report, which concluded that “there was insufficient high quality data available to make conclusions about the potential role of specific contaminants in the POD.” The report cited multiple sources; however, data collected by the USGS were not included in the publication even though these data met all criteria listed for inclusion in the report. What follows is a summary of publicly available USGS data for pesticide concentrations in surface water and sediments within the Sacramento–San Joaquin Delta region from the years 1990 through 2010. Data were retrieved though the USGS National Water Information System (NWIS) database, a publicly available online-data repository (U.S. Geological Survey, 1998), and from published USGS reports (also available online at http://pubs.er.usgs.gov/). The majority of the data were collected in support of two long term USGS monitoring programs—National Water Quality Assessment Program (NAWQA; http://water.usgs.gov/ nawqa/) and National Stream Quality Accounting Network (NASQAN; http://water.usgs.gov/nasqan/)—and through projects associated with the USGS Toxics Substances Hydrology Program (http://toxics.usgs.gov/). In addition, data were collected during multiple research projects that were supported by various federal, state, and local agencies. Although these data have been previously published in some form, it is hoped that by focusing on samples collected within the delta region and presenting these data in a concise format, they will be a valuable resource for scientists, resource managers, and members of the public working to understand the role of pesticides in the POD and their potential effects on the overall health of the delta ecosystem.

California↗

USGS2015

Stream geomorphic and habitat data from a baseline study of Underwood Creek, Wisconsin, 2012

Geomorphic and habitat data were collected along Underwood Creek as part of a larger study of stream water quality conditions in the greater Milwaukee, Wisconsin, area. The data were collected to characterize baseline physical conditions in Underwood Creek prior to a potential discharge of wastewater return flow to the stream from the city of Waukesha, Wis. Geomorphic and habitat assessments were conducted in the summer and fall of 2012 by the U.S. Geological Survey (USGS) in cooperation with the Milwaukee Metropolitan Sewerage District. The assessments used a transect based, reach scale assessment at a total of eight reaches—six reaches along Underwood Creek and two reaches along the Menomonee River upstream and downstream of its confluence with Underwood Creek. The reach scale assessment was an updated version of the USGS National Water Quality Assessment Program habitat assessment integrated with an intensive geomorphic assessment. Channel cross sections and longitudinal profiles were surveyed along each of the eight reaches, and discharge and water temperature were measured. Additionally, a geomorphic river walk-through was completed along a 10 kilometer reach that spanned the individual assessment reaches and the sections of channel between them. The assessments and river walk-through described channel and bank stability, channel shape and size, sediment and riparian conditions along these areas of Underwood Creek and the Menomonee River. Since the time of the data collection, focus has turned to other Lake Michigan tributary watersheds for possible Waukesha return-flow discharges; however, the data collected for this effort remains a valuable asset for the baseline characterization, design, and prioritization of planned stream rehabilitation activities in Underwood Creek. The data files presented in this report include a variety of formats including geographic information system files, spreadsheets, photos, and scans of field forms. A subset of habitat-specific data collected during the baseline study can be retrieved through USGS BioData https://aquatic.biodata.usgs.gov/landing.action .

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