USGS Science⌕ Search

SEARCH · USGS Science

Results for “Data Science Journal”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 541 records · Page 30Linked to original sources

Evaluating a fish monitoring protocol using state-space hierarchical models

Using data collected from three river reaches in Montana, we evaluated our ability to detect population trends and predict fish future fish abundance. Data were collected as part of a long-term monitoring program conducted by Montana Fish, Wildlife and Parks to primarily estimate rainbow (Oncorhynchus mykiss) and brown trout (Salmo trutta) abundance in numerous rivers across Montana. We used a hierarchical Bayesian mark-recapture model to estimate fish abundance over time in each of the three river reaches. We then fit a state-space Gompertz model to estimate current trends and future fish populations. Density dependent effects were detected in 1 of the 6 fish populations. Predictions of future fish populations displayed wide credible intervals. Our simulations indicated that given the observed variation in the abundance estimates, the probability of detecting a 30% decline in fish populations over a five-year period was less than 50%. We recommend a monitoring program that is closely tied to management objectives and reflects the precision necessary to make informed management decisions.

Montana↗

Digital mapping of the Mars Pathfinder landing site: Design, acquisition, and derivation of cartographic products for science applications

The Imager for Mars Pathfinder (IMP) acquired more than 16,000 images and provided panoramic views of the surface of Mars at the Mars Pathfinder landing site in Ares Vallis. This paper describes the stereoscopic, multispectral IMP imaging sequences and focuses on their use for digital mapping of the landing site and for deriving cartographic products to support science applications of these data. Two‐dimensional cartographic processing of IMP data, as performed via techniques and specialized software developed for ISIS (the U.S. Geological Survey image processing software package), is emphasized. Cartographic processing of IMP data includes ingestion, radiometric correction, establishment of geometric control, coregistration of multiple bands, reprojection, and mosaicking. Photogrammetric processing, an integral part of this cartographic work which utilizes the three‐dimensional character of the IMP data, supplements standard processing with geometric control and topographic information [ Kirk et al. , this issue]. Both cartographic and photogrammetric processing are required for producing seamless image mosaics and for coregistering the multispectral IMP data. Final, controlled IMP cartographic products include spectral cubes, panoramic (360° azimuthal coverage) and planimetric (top view) maps, and topographic data, to be archived on four CD‐ROM volumes. Uncontrolled and semicontrolled versions of these products were used to support geologic characterization of the landing site during the nominal and extended missions. Controlled products have allowed determination of the topography of the landing site and environs out to ∼60 m, and these data have been used to unravel the history of large‐ and small‐scale geologic processes which shaped the observed landing site. We conclude by summarizing several lessons learned from cartographic processing of IMP data.

Journal of Geophysical Research E: Planets↗

Between the supercontinents: Mesoproterozoic Deer Trail Group, an intermediate age unit between the Mesoproterozoic Belt–Purcell Supergroup and the Neoproterozoic Windermere Supergroup in northeastern Washington, USA

Mesoproterozoic and Neoproterozoic basins in western North America record the evolving position of the Laurentian craton within two supercontinents during their growth and dismemberment: Columbia (Nuna) and Rodinia. The western-most exposures of the Columbia rift-related Belt–Purcell Supergroup are preserved in northeastern Washington, structurally overlain by the Deer Trail Group and depositionally overlying the Neoproterozoic Windermere Supergroup. It has been disputed whether the Deer Trail Group is correlative with the Belt–Purcell Supergroup, or younger. To help resolve the uncertain correlation of these units and their bearing on supercontinent evolution, we characterized the detrital zircon age populations of units from the Deer Trail Group, the Windermere Supergroup, and the Belt–Purcell Supergroup in northeastern Washington. These data show that the western part of the Columbia supercontinent (now located in Australia and eastern Antarctica) remained attached to western Laurentia and continued to supply 1600–1500 Ma detrital zircon grains to the Belt–Purcell Supergroup until after ca. 1391 Ma. The Deer Trail Group is younger than the Belt–Purcell strata, with the basal unit younger than ca. 1362 Ma and a middle unit younger than ca. 1300 Ma. The Deer Trail Group has a pre-Grenville-age provenance from the southwestern USA and possibly east Antarctica. The Buffalo Hump Formation is younger than the Deer Trail Group, with Grenville-age (ca. 1112 Ma) detrital zircon grains and a detrital zircon signature like that of the overlying Neoproterozoic Windermere Supergroup. We interpret the Deer Trail Group to have been deposited during the rift-demise of supercontinent Columbia and before the Grenville-age assembly of the supercontinent Rodinia.

Washington↗

Thermal detectability of subsurface water ice on Mars: A comparative analysis for the Subsurface Water Ice Mapping (SWIM) Project

We have developed a new global map of shallow ground ice distribution, SWIM23, based on Mars Global Surveyor Thermal Emission Spectrometer data and made systematic comparisons between this new map and two similar, previously developed data products. We have explored the origin of differences between the three ice maps by detailing technical and procedural differences in their development, by making global pixel-by-pixel comparisons, and by carrying out a series of one-dimensional thermal simulations to explore fundamental physical limitations of thermal ice-detection techniques. These efforts and the production of a composite thermal ice-consistency map supported integration of multiple geophysical data products relevant to ice detection in the upper meter of the Martian regolith into the larger Mars Subsurface Water Ice Mapping project. Our work also highlights fundamental physical limitations to thermal ice detection as a technique, particularly the rapid fall-off in ice detection sensitivity at depths >30 cm, which produces maximum uncertainty in the presence and depth of ice within regions preferred for potential human landing sites. A future Mars orbiter mission designed to detect ice and support crewed landing site selection in the midlatitude region should give payload priority to an instrument capable of probing the 1–5 m depth range (i.e., a high-frequency radar), over a next-generation thermal spectrometer, which is unlikely to offer clarity on ice table depths or lateral continuity of the ice table in the locations of highest interest.

Planetary Science Journal↗

South Africa's experimental fisheries closures and recovery of the endangered African penguin

In a scientifically-transformative project, South Africa implemented a decade-long field experiment to understand how fisheries may be affecting its most iconic seabird, the African penguin Spheniscus demersus. This unique effort prohibits the take of anchovy and sardine within relatively small areas around four African penguin breeding colonies, two in the Benguela upwelling ecosystem and two in the adjacent Agulhas region. For the Benguela, fisheries closures within the birds’ primary foraging range increased their breeding productivity and perhaps reduced parental foraging efforts, indicating that the fisheries are competing with the birds for food. Results were less clear for foraging behaviour in the Agulhas, but no data on breeding success were collected there. The African penguin is endangered, its population continues to decline, and fisheries closures have been demonstrated to improve demographic traits that contribute to population growth. Therefore, given the critical status of the species, fisheries closures should be maintained, at least at Dassen Island where the population has great capacity to expand and support other nearby colonies. Continuing or implementing corresponding fisheries closures in the Agulhas region is also warranted, as well as creating and testing the value of pelagic closed areas during the non-breeding season when the penguins disperse widely across these ecosystems. These management actions would increase penguin food supplies and may help to meet societal goals of halting the decline of the penguin population, as well as maintaining the economic and cultural services provided by fisheries and ecotourism.

Agulhas, Benguela, Dassen Island↗

Trophic ecology of juvenile lean and siscowet lake charr (Salvelinus namaycush) in Lake Superior: Assessing for potential competition

We investigated the spatial overlap, diet, isotopic niche, and growth of juvenile lean and siscowet lake charr ( Salvelinus namaycush ) in Lake Superior to address concerns of potential competition with implications to the study of resource polymorphism. Catch data revealed the greatest levels of sympatry in waters from 40 to 60 m. Juvenile lean and siscowet diet changed ontogenetically with Mysis being the dominant prey item for the smallest lake charr but differentiating with onset of piscivory. As ecotypes increased in size, lean diets became dominated by pelagic prey, whereas siscowets had equal proportions of benthic and pelagic prey. Isotopic niche overlap declined between ecotypes coincident with siscowet lake charr shifting to deeper habitats around 400 mm. Lean and siscowet exhibited different growth trajectories. However, length at age-4 declined in parallel for both ecotypes with no trend in condition suggesting that lake charr growth is sensitive to prey biomass and unlikely related to competition. Our findings indicate minimal evidence of competition and support the concept that multiple sympatric ecotypes of lake charr in Lake Superior are maintained by resource polymorphism.

Lake Superior↗

Comparison of electrofishing and PIT antennas for detection of hatchery-reared Roundtail Chub (Gila robusta) stocked into a desert stream

Stocking of rare native fishes for conservation purposes is a common practice in the southwestern United States. Monitoring typically occurs after hatchery-reared fish are released to assess post-stocking movement and survival. We conducted a two-year study, in which tow-barge electrofishing and portable, flat-bed passive integrated transponder (PIT) antennas were used to monitor PIT-tagged, hatchery-reared roundtail chub ( Gila robusta ) following release into the upper Verde River in Arizona. Specifically, our study aimed to compare the performance of PIT antennas and electrofishing in detecting PIT tagged fish released in a small desert river and to examine the behavioral response of hatchery-reared roundtail chub after stocking. In both years, more fish were detected by antenna arrays (84%) than by electrofishing (30%). roundtail chub were significantly more likely to be detected by antennas than electrofishing each year; however, when antenna data were evaluated only during the few days in which electrofishing took place, there was no significant difference (Year 1, p=0.1784; Year 2, p=0.6295) in detection between gear types for the same time interval, suggesting that electrofishing and antennas are equally likely to detect fish during 48-72 hour time frames. Within 72 hours of release, antennas detected 100% of fish that moved upstream and 93.8% of fish that moved downstream from the stocking location. Overall, less than half (45.6% in Year 1; 41.1% in Year 2) of the stocked roundtail chub were detected using both methods in both years. Utilization of both active capture gear (electrofishing) and passive gear (antennae) had advantages over monitoring with a single method. PIT antennae can be especially useful for managers who lack the personnel or time to implement more intensive methods of capture but want to monitor post-stocking movement and survival of stocked fish.

Arizona↗

Integrated water resources trend assessments: State of the science, challenges, and opportunities for advancement

Water is vital to human life and healthy ecosystems. Here we outline the current state of national-scale water resources trend assessments, identify key gaps, and suggest advancements to better address critical issues related to changes in water resources that may threaten human development or the environment. Questions like, “Do we have less suitable drinking water now than we had 20 years ago?” or “Are flood events more common now than they were in the past?” prompted improvements in data, trend estimation methods, and modeling frameworks to track changes in, and better understand how land use and climate influence four water resources domains: surface and groundwater quantity and quality. However, continued advancement in trend assessments to better address issues related to changes in water availability is needed. Areas of need include more timely and efficient delivery of water resources trend results and improved capacity to estimate trends at unmonitored locations. Additional integration pieces include increased understanding of groundwater–surface water interactions, incorporation of both quantity and quality trends into water availability estimates, and the refinement of trend metrics to account for the competing needs of society and ecological integrity. Coupled with improved driver attribution studies, these components will better inform current and future water resources management.

Journal of the American Water Resource Association↗

Aggregating three sources of long-term trends of swallows and martins to identify priority conservation areas in the Great Lakes region

1. Long-term monitoring of bird populations across scales is important in evaluating conservation targets and creating effective conservation strategies. For nearly six decades, the Breeding Bird Survey (BBS) has served as the primary broad-scaled source of relative abundance trends of swallows and martins in North America. Recently, however, it has become possible to obtain breeding population trends using semi-structured eBird community science data. Moreover, weather surveil-lance radar data of swallow and martin roosting populations yield a third complementary source of trend information. 2. Using results from these three approaches, we propose a novel method of spatially combining estimates of percent change per year into a probability of directional agreement and/or disagreement that describes (1) the direction of the trend within a given region, (2) the amount of evidence associated with the estimate and (3) how much uncertainty surrounds it. We focus our efforts on an area of high Hirundinidae concentration in the North American Great Lakes region and predict trends from 2012 to 2022. 3. We found a high probability of agreement between all three sources about ob-served declines in swallow and martin trends in the region surrounding Lake Ontario and to the west of Lake Michigan. Focusing future research on these regions could improve our understanding of these declines and help build more targeted conservation initiatives. 4. Synthesis and applications. Our data integration methodology allows managers to identify regions that accumulate evidence of concerning trends across multiple wildlife monitoring schemes. These regions can thus be prioritized in conservation and management efforts. This approach can be generalized to other sources of long-term monitoring data of different species, at different stages of their annual cycle, in any geographic location.

Great Lakes region↗

Diminishing productivity and hyperstable harvest in northern Wisconsin walleye fisheries

Managing fisheries in a changing socio-ecological environment may require holistic approaches for identifying and adapting to novel ecosystem dynamics. Using 32 years of Ceded Territory of Wisconsin (CTWI) walleye (Sander vitreus) data, we estimated production (P), biomass (B), biomass turnover (P/B), yield (Y), and yield over production (Y/P) and tested for hyperstability in walleye yield. Most CTWI walleye populations showed low P, and B, and Y/P < 1. Yet, production overharvest (Y/P > 1) was prevalent among Wisconsin walleye recruitment-based management approaches (natural recruitment [NR], sustained only by stocking, combination). Production, B, and P/B have declined in NR populations, while Y and Y/P have remained constant. Walleye Y was hyperstable along a production gradient among all management approaches and fishery types (i.e., angling only, angling/tribal harvest combined). Diminishing productivity and hyperstable yield may be jointly contributing to observed walleye declines. We classified lakes into management groups of low, moderate, or high vulnerability to harvest based on Y/P and P/B dynamics and recommend that exploitation may need to decline to maintain or increase the adaptive capacity of CTWI walleye.

Wisconsin↗

Extensive coral mortality in the US Virgin Islands in 2005/2006: A review of the evidence for synergy among thermal stress, coral bleaching and disease

In the summer/fall of 2005, extensive coral bleaching on reefs in the US Virgin Islands (USVI) was associated with sea water temperatures exceeding 30°C. Almost all coral species bleached, including Acropora palmata , which bleached for the first time on record in the USVI. As water temperatures cooled, corals began to regain their normal coloration. However, a severe disease outbreak then occurred on deeper, non-acroporid reefs. The disease demonstrated signs consistent with white plague. Monitoring of coral cover along previously established long-term transects on several reefs in St. John and St. Croix was intensified. Data on bleaching and disease were collected before, during and after this bleaching/disease episode. Average coral cover declined by over 50%, from 21.4% to 10.3% at the long-term study sites, within one year of the onset of bleaching, declining further to 8.3% after two years. This loss of coral cover was greater than from all other stressors affecting the USVI reefs in preceding years, and no significant recovery is evident. Disease prevalence increased on bleached A. palmata colonies that were being monitored as well as on the colonies of other species on the deeper reefs. Bleached A. palmata colonies had more disease (primarily white pox and other un-described diseases) than unbleached colonies. The non-acroporid corals that bleached most severely suffered the highest mortality from disease. Although the research summarized in this paper is not conclusive, the results suggest that high water temperatures lead to bleaching, which weakens corals and makes them more vulnerable to diseases.

U.S. Virgin Islands↗

Rapid growth in the early marine period improves the marine survival of Chinook salmon (Oncorhynchus tshawytscha) in Puget Sound, Washington

We examined the effect of early marine entry timing and body size on the marine (smolt-to-adult) survival of Puget Sound Chinook salmon ( Oncorhynchus tshawytscha ). We used data from coded wire tag release groups of hatchery Chinook salmon to test whether hatchery release date, release size, and size in offshore waters in July and September influenced marine survival. Marine survival was most strongly related to the average body size in July, with larger sizes associated with higher survivals. This relationship was consistent over multiple years (1997–2002), suggesting that mortality after July is strongly size-dependent. Release size and date only slightly improved this relationship, whereas size in September showed little relationship to marine survival. Specifically, fish that experienced the highest marine survivals were released before 25 May and were larger than 17 g (or 120 mm fork length) by July. Our findings highlight the importance of local conditions in Puget Sound (Washington, USA) during the spring and summer, and suggest that declines in marine survival since the 1980s may have been caused by reductions in the quality of feeding and growing conditions during early marine life.

Washington↗

An automated technique for flow measurements from mariotte reservoirs

The mariotte reservoir supplies water at a constant hydraulic pressure by self-regulation of its internal gas pressure. Automated outflow measurements from mariotte reservoirs are generally difficult because of the reservoir's self-regulation mechanism. This paper describes an automated flow meter specifically designed for use with mariotte reservoirs. The flow meter monitors changes in the mariotte reservoir's gas pressure during outflow to determine changes in the reservoir's water level. The flow measurement is performed by attaching a pressure transducer to the top of a mariotte reservoir and monitoring gas pressure changes during outflow with a programmable data logger. Using a simple linear relation between reservoir gas pressure and water-level changes with time, the data logger converts the transducer signal into outflow-flux values. To demonstrate the usefulness of the new technique, two constant-head experiments are described that have vastly different flux ranges and time durations. The first experiment was a 1-h infiltration run in which infiltration rates dropped from 0.6 to 0.2 cm/min. The second experiment was a 3-week evaporation experiment in which the evaporation rate ranged from 1.0 to 3.0 cm/d. Results indicate that the automated flow measurement technique performed well when compared to a manual sight-tube technique for flux measurements; the difference between the two methods was never more than 9% for the infiltration experiment and 5% for the evaporation experiment. The advantages of the new technique over previously available automated flow measurement techniques include: (i) the ability to rapidly record a large range of fluxes without restricting outflow, and (ii) the ability to accurately average the pulsing flow, which commonly occurs during outflow from the mariotte reservoir.

Soil Science Society of America Journal↗

Measurement error associated with surveys of fish abundance in Lake Michigan

In fisheries, imprecise measurements in catch data from surveys add uncertainty to the results of fishery stock assessments. The USGS Great Lakes Science Center (GLSC) began to survey the fall fish community of Lake Michigan in 1962 with bottom trawls. The measurement error was evaluated at the level of individual tows for nine fish species collected in this survey by applying a measurementerror regression model to replicated trawl data. It was found that the estimates of measurement-error variance ranged from 0.37 (deepwater sculpin, Myoxocephalus thompsoni ) to 1.23 (alewife, Alosa pseudoharengus ) on a logarithmic scale corresponding to a coefficient of variation = 66 to 156%. The estimates appeared to increase with the range of temperature occupied by the fish species. This association may be a result of the variability in the fall thermal structure of the lake. The estimates may also be influenced by other factors, such as pelagic behavior and schooling. Measurement error might be reduced by surveying the fish community during other seasons and/or by using additional technologies, such as acoustics. Measurement-error estimates should be considered when interpreting results of assessments that use abundance information from USGS-GLSC surveys of Lake Michigan and could be used if the survey design was altered. This study is the first to report estimates of measurement-error variance associated with this survey.

Lake Michigan↗

Salmon-mediated nutrient flux in selected streams of the Columbia River basin, USA

Salmon provide an important resource subsidy and linkage between marine and land-based ecosystems. This flow of energy and nutrients is not uni-directional (i.e., upstream only); in addition to passive nutrient export via stream flow, juvenile emigrants actively export nutrients from freshwater environments. In some cases, nutrient export can exceed import. We evaluated nutrient fluxes in streams across central Idaho, USA using Chinook salmon (Oncorhynchus tshawytscha) adult escapement and juvenile production data from 1998 to 2008. We found in the majority of stream-years evaluated, adults imported more nutrients than progeny exported; however, in 3% of the years, juveniles exported more nutrients than their parents imported. On average, juvenile emigrants exported 22 ± 3% of the nitrogen and 30 ± 4% of the phosphorus their parents imported. This relationship was density dependent and nonlinear; during periods of low adult abundance juveniles were larger and exported up to 194% and 268% of parental nitrogen and phosphorus inputs, respectively. We highlight minimum escapement thresholds that appear to 1) maintain consistently positive net nutrient flux and 2) reduce the average proportional rate of export across study streams. Our results suggest a state-shift occurs when adult spawner abundance falls below a threshold to a point where the probability of juvenile nutrient exports exceeding adult imports becomes increasingly likely.

Idaho↗

Evidence of sound production by spawning lake trout (Salvelinus namaycush) in lakes Huron and Champlain

Two sounds associated with spawning lake trout ( Salvelinus namaycush ) in lakes Huron and Champlain were characterized by comparing sound recordings to behavioral data collected using acoustic telemetry and video. These sounds were named growls and snaps, and were heard on lake trout spawning reefs, but not on a non-spawning reef, and were more common at night than during the day. Growls also occurred more often during the spawning period than the pre-spawning period, while the trend for snaps was reversed. In a laboratory flume, sounds occurred when male lake trout were displaying spawning behaviors; growls when males were quivering and parallel swimming, and snaps when males moved their jaw. Combining our results with the observation of possible sound production by spawning splake ( Salvelinus fontinalis × Salvelinus namaycush hybrid), provides rare evidence for spawning-related sound production by a salmonid, or any other fish in the superorder Protacanthopterygii. Further characterization of these sounds could be useful for lake trout assessment, restoration, and control.

Michigan↗

Geospatial resources for the geologic community: The USGS National Map

Geospatial data are a key component of investigating, interpreting, and communicating the geological sciences. Locating geospatial data can be time-consuming, which detracts from time spent on a study because these data are not obviously placed in central locations or are served from many disparate databases. The National Map of the US Geological Survey is a publicly available resource for accessing the geospatial base map data needs of the geological community from a central location. The National Map data are available through a viewer and download platform providing access to eight primary data themes, plus the US Topo and scanned historical topographic maps. The eight themes are elevation, orthoimagery, hydrography, geographic names, boundaries, transportation, structures, and land cover, and they are being offered for download as predefined tiles in formats supported by leading geographic information system software. Data tiles are periodically refreshed to capture the most current content and are an efficient method for disseminating and receiving geospatial information. Elevation data, for example, are offered as a download from the National Map as 1&deg; &times; 1&deg; tiles for the 10- and 30- m products and as 15&prime; &times; 15&prime; tiles for the higher-resolution 3-m product. Vector data sets with smaller file sizes are offered at several tile sizes and formats. Partial tiles are not a download option&mdash;any prestaged data that intersect the requesting bounding box will be, in their entirety, part of the download order. While there are many options for accessing geospatial data via the Web, the National Map represents authoritative sources of data that are documented and can be referenced for citation and inclusion in scientific publications. Therefore, National Map products and services should be part of a geologist&rsquo;s first stop for geospatial information and data.

Journal of Geology↗

Climate-induced trends in predator–prey synchrony differ across life-history stages of an anadromous salmonid

Differential climate-induced shifts in phenology can create mismatches between predators and prey, but few studies have examined predator–prey mismatch across multiple life-history stages. We used long-term data from a warming stream with shifting salmonid migration timings to quantify intra-annual migration synchrony between predatory Dolly Varden ( Salvelinus malma ) and Pacific salmon prey and examined how predator–prey synchrony has been influenced by climate change. We demonstrate that Dolly Varden have become increasingly mismatched with spring downstream migrations of abundant pink salmon ( Oncorhynchus gorbuscha ) juveniles. However, Dolly Varden have remained matched with fall upstream migrations of spawning Pacific salmon, including coho ( Oncorhynchus kisutch ), sockeye ( Oncorhynchus nerka ), and pink salmon. Downstream predator–prey migration synchrony decreased over time and with higher temperatures, particularly with pink salmon. In contrast, upstream migration synchrony was temporally stable and increased with rising temperatures. Differing trends in Dolly Varden predator–prey synchrony may be explained by the direct use of salmon to cue upstream migration, but not downstream migration. Overall, we show that climate change can have differing impacts on predator–prey synchrony across life-history stages.

Alaska↗