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USGS2019

Spatial and temporal variation in river corridor exchange across a 5th order mountain stream network

Although most field and modeling studies of river corridor exchange have been conducted a scales ranging from 10’s to 100’s of meters; results of these studies are used to predict their ecological and hydrological influences at the scale of river networks. Further complicating prediction, exchanges are expected to vary with hydrologic forcing and the local geomorphic setting. While we desire predictive power, we lack a complete spatiotemporal relationship relating discharge to the variation in geologic setting and hydrologic forcing that are expected across a river basin. Indeed, Wondzell’s (2011) conceptual model predicts systematic variation in river corridor exchange as a function of (1) variation in baseflow over time at a fixed location, (2) variation in discharge with location in the river network, and (3) local geomorphic setting. To test this conceptual model we conducted more than 60 solute tracer studies including a synoptic campaign in the 5th order river network of the H.J. Andrews Experimental Forest (Oregon, USA) and replicate-in-time experiments in four watersheds. We interpret the data using a series of metrics describing river corridor exchange and solute transport, testing for consistent direction and magnitude of relationships relating these metrics to discharge and local geomorphic setting. We confirmed systematic decrease in river corridor exchange space through the river networks, from headwaters to the larger mainstem. However, we did not find systematic variation with changes in discharge through time, nor with local geomorphic setting. While interpretation of our results is complicated by problems with the analytical methods, they are sufficiently robust for us to conclude that space-for-time and time-for-space substitutions are not appropriate in our study system. Finally, we suggest two strategies that will improve the interpretability of tracer test results and help the hyporheic community develop robust data sets that will enable comparisons across multiple sites and/or discharge conditions.

Hydrology and Earth System Sciences↗

USGS2024

Benthic foraminiferal community changes across the Miocene climatic optimum Identified by SHEBI analysis (SHE analysis for biozone identification), Calvert Cliffs, Maryland, USA

The Calvert Cliffs, MD, an iconic section of Middle Miocene strata, have been well studied both paleontologically and stratigraphically for over a century. However, few studies of the Calvert Cliffs have looked at the benthic foraminifera. This study uses SHEBI analysis (SHE analysis for biozone identification) of benthic foraminiferal assemblages to analyze community change in the Calvert and Choptank formations of the Calvert Cliffs deposited during the Miocene Climatic Optimum (MCO; 17–14.8 Ma) and the Middle Miocene Climate Transition (MMCT; 14.8–13.8 Ma). SHE analysis differs from traditional analytical methods by defining communities based on changes in diversity rather than the relative abundance of individual species. This study uses SHE analysis on a composite section of benthic foraminiferal assemblages from three vertical transects that span the MCO and MMCT. Two communities were identified from the studied strata. Community 1 was deposited during the MCO and includes incised valley fill (IVF), transgressive system tract (TST), and highstand system tract (HST) deposits. Community 2, deposited during the MMCT, is composed of samples from TST, HST, IVF, and another HST. The assemblages of community 1 are representative of an inner to middle shelf environment whereas those of community 2 are representative of an inner shelf environment. The two foraminiferal communities differentiated by SHE analysis indicate a high relative sea level in the Salisbury Embayment during the warm MCO followed by a decrease in sea level during the subsequent cooler MMCT.

Maryland↗

USGS2004

Population dynamics of the California Spotted Owl (Strix occidentalis occidentalis): a meta-analysis

We conducted a meta-analysis to provide a current assessment of the population characteristics of California Spotted Owls (Strix occidentalis occidentalis) resident on four study areas in the Sierra Nevada and one study area in southern California. Our meta-analysis followed rigorous a priori analysis protocols, which we derived through extensive discussion during a week-long analysis workshop. Because there is great interest in the owl?s population status, we used state-of-the-art analytical methods to obtain results as precise as possible. Our meta-analysis included data from five California study areas located on the Lassen National Forest (1990-2000), Eldorado National Forest (1986-2000), Sierra National Forest (1990-2000), Sequoia and Kings Canyon national parks (1990-2000), and San Bernardino National Forest (1987-1998). Four of the five study areas spanned the length of the Sierra Nevada, whereas the fifth study area encompassed the San Bernardino Mountains in southern California. Study areas ranged in size from 343 km2 (Sequoia and Kings Canyon) to 2,200 km (Lassen). All studies were designed to use capture-recapture methods and analysis. We used survival in a meta-analysis because field methods were very similar among studies. However, we did not use reproduction in a meta-analysis because it was not clear if variation among individual study-area protocols used to assess reproductive output of owls would confound results. Thus, we analyzed fecundity only by individual study area. We examined population trend using the reparameterized Jolly-Seber capture-recapture estimator (8t) We did not estimate juvenile survival rates because of estimation problems and potential bias because of juvenile emigration from study areas. We used mark-recapture estimators under an information theoretic framework to assess apparent survival rates of adult owls. The pooled estimate for adult apparent survival for the five study areas was 0.833, which was lower than pooled adult survival rates (0.850) from 15 Northern Spotted Owl (S. o. caurina) studies. Estimates of survival from the best model on the Lassen (N = 0.829, 95% confidence intervals [CI = 0.798 to 0.857), Eldorado (N = 0.815, 95% CI = 0.772 to 0.851), Sierra (N = 0.818, 95% CI = 0.781 to 0.850), and San Bernardino (N = 0.813, 95% CI = 0.782 to 0.841) were not different. However, the Sequoia and Kings Canyon population had a higher survival rate (N = 0.877, 95% CI = 0.842 to 0.905) than the other study areas. Management history and forest structure (e.g. presence of giant sequoia [Sequoiadendron giganteum]) on the Sequoia and Kings Canyon study area differed from all other study areas. There appears to be little or no evidence for temporal variation in adult apparent survival on any of the study areas. Although we did not directly compare fecundity estimates were highly variable among years within all study areas (CV of temporal process variation = 0.672-0.817). Estimates for fecundity among the study populations were Lassen (b = 0.336, SE = 0.083), Eldorado (b = 0.409, SE = 0.087), Sierra (b = 0.284, SE = 0.073), Sequoia and Kings Canyon (b = 0.289, SE = 0.074), and San Bernardino (b = 0.362, SE = 0.038). During most years, the Sierra Nevada populations showed either moderate or poor fecundity. However, 1992 appeared to be an exceptional reproductive year for owls in the Sierra Nevada. In contrast, the San Bernardino population had less variable reproduction (CV of temporal process variation = 0.217), but experienced neither the exceptional reproduction of 1992 nor the extremely poor years that characterized all of the Sierra Nevada study areas. Because fecundity may be influenced by weather patterns, it was possible that the different weather patterns between southern California and the Sierra Nevada accounted for that difference. Except for Eldorado, all estimates for 8t, were <1.0, but none was different from 8 = 1.0 given the 95% confidence i

Ornithological Monographs↗

USGS1983

SUBMICROSCOPIC ( less than 1 mu m) MINERAL CONTENTS OF VITRINITES IN SELECTED BITUMINOUS COAL BEDS.

An important aspect of the petrographic description of coal is the characterization of coal quality, including chemical attributes. For geologic investigations, data on the concentrations, distribution, and modes of occurrence of minor and trace elements provide a basis for reconstructing the probable geochemical environment of the swamp material that was converted into peat, and the geochemical conditions that prevailed during and subsequent to coalification. We have been using electron (EPMA) and proton (PIXE) microprobe analytical methods to obtain data on the chemical characteristics of specific coal constituents in their original associations within coal samples. The present study is aimed at evaluation of the nature of mineral occurrences and heterogeneous elemental concentrations within vitrinites. Vitrinites are usually the most abundant, and therefore most important, maceral group in bituminous coal. 8 refs.

Conference Paper↗

USGS2000

Sampling for mercury at subnanogram per litre concentrations for load estimation in rivers

Estimation of constituent loads in streams requires collection of stream samples that are representative of constituent concentrations, that is, composites of isokinetic multiple verticals collected along a stream transect. An all-Teflon isokinetic sampler (DH-81) cleaned in 75??C, 4 N HCl was tested using blank, split, and replicate samples to assess systematic and random sample contamination by mercury species. Mean mercury concentrations in field-equipment blanks were low: 0.135 ng??L-1 for total mercury (??Hg) and 0.0086 ng??L-1 for monomethyl mercury (MeHg). Mean square errors (MSE) for ??Hg and MeHg duplicate samples collected at eight sampling stations were not statistically different from MSE of samples split in the laboratory, which represent the analytical and splitting error. Low fieldblank concentrations and statistically equal duplicate- and split-sample MSE values indicate that no measurable contamination was occurring during sampling. Standard deviations associated with example mercury load estimations were four to five times larger, on a relative basis, than standard deviations calculated from duplicate samples, indicating that error of the load determination was primarily a function of the loading model used, not of sampling or analytical methods.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2003

An overview on current fluid-inclusion research and applications

This paper provides an overview of some of the more important developments in fluid-inclusion research and applications in recent years, including fluid-inclusion petrography, PVTX studies, and analytical techniques. In fluid-inclusion petrography, the introduction of the concept of 'fluid-inclusion assemblage' has been a major advance. In PVTX studies, the use of synthetic fluid inclusions and hydrothermal diamond-anvil cells has greatly contributed to the characterization of the phase behaviour of geologically relevant fluid systems. Various analytical methods are being developed and refined rapidly, with the Laser-Raman and LA-ICP-MS techniques being particularly useful for volatile and solute analyses, respectively. Ore deposit research has been and will continue to be the main field of application of fluid inclusions. However, fluid inclusions have been increasingly applied to other fields of earth science, especially in petroleum geology and the study of magmatic and earth interior processes.

Acta Petrologica Sinica↗

USGS2004

Vertical hydraulic conductivity measurements in the Denver Basin, Colorado

The Denver Basin is a structural basin on the eastern flank of the Rocky Mountain Front Range, Colorado, containing approximately 3000 ft of sediments that hold a critical groundwater resource supplying many thousands of households with water. Managing this groundwater resource requires understanding how water gets into and moves through water-bearing layers in a complex multiple-layered sedimentary sequence. The Denver Basin aquifer system consists of permeable sandstone interbedded with impermeable shale that has been subdivided into four principle aquifers named, in ascending order, the Laramie-Fox Hills, Arapahoe, Denver, and Dawson aquifers. Although shale can dominate the stratigraphic interval containing the aquifers, there is very little empirical data regarding the hydrogeologic properties of the shale layers that control groundwater flow in the basin. The amount of water that flows vertically within the basin is limited by the vertical hydraulic conductivity through the confining shale layers. Low vertical flow volumes translate to low natural recharge rates and can have a profound negative impact on long-term well yields and the economic viability of utilizing the resource. To date, direct measurements of vertical hydraulic conductivity from cores of fine-grained sediments have been published from only five locations; and the data span a wide range from 1??10-3 to 1??10-11 cm/sec. This range may be attributable, in part, to differences in sample handling and analytical methods; however, it may also reflect subtle differences in the lithologic characteristics of the fine-grained sediments such as grain-size, clay mineralogy, and compaction that relate to position in the basin. These limited data certainly call for the collection of additional data.

Mountain Geologist↗

USGS2012

Summary

This chapter summarizes results in previous chapters by providing estimated densities and population sizes, in the areas we have surveyed, for Alaska, Canada, and both regions combined. A total of 1,554 rapid plots, covering 232 km 2 , and 83 intensive plots were surveyed during the study. The monograph presents >600 density estimates and >200 estimated population sizes. Densities for all shorebirds combined were highest in the Yukon-Kuskokwim Delta and next highest on the Alaska Peninsula and the NPRA. They were lower in eastern Alaska and most of Canada but were high in the Foxe Basin including Southampton, Coats, Prince Charles, and Air Force Islands. Although densities were highest in wetlands, wetlands only contained about 45% of the shorebirds in our study area, and uplands, in which densities were generally very low, contained an estimated 27% of the total population. Uplands therefore should not be ignored in monitoring shorebird populations. We argue that the field and analytic methods are now well developed and can be relied on to produce rigorous estimates of density, habitat relationships, population size, and trend in population size. Comparison of our results with Morrison et al.’s (2006) estimates of population size indicate general agreement at the rank order level but where we could make detailed evaluations of their estimates, they appeared generally to be low. All of the data, programs, and other results are available, free of charge, at http://greatbasin.wr.usgs.gov/CBM/default.asp?PageID=1.

Book chapter↗

USGS2012

Shorebird surveys in western Alaska

Surveys for breeding shorebirds were conducted during 2001-2002 in four National Wildlife Refuges (NWRs) in western Alaska - Alaska Maritime, Alaska Peninsula, Yukon Delta and Selawik. The sizes of our study areas on and adjacent to these four refuges were 9,243 km 2 , 24,493 km 2 , 853 km 2 , and 15,170 km 2 , respectively. Eleven sites were selected non-randomly, 3 in the Alaska Maritime NWR, 6 in the Alaska Peninsula, and one each in the other two NWRs. Survey and analytic methods are described in Chapter 2. Rapid surveys were conducted on 224 plots; 2,163 indicated pairs of shorebirds were recorded of which 1,485 were judged to be nesting in the surveyed plots. Detection ratios were estimated using intensive plot data from northern Alaska as well as from two plots on the Yukon Delta NWR. The highest estimated densities (shorebirds/km 2 ) were on the Yukon Delta Study Area: 416 in wetlands and 300 in moist areas. The estimated densities on the Alaska Peninsula Study Area were 118 in wetlands and 62 in uplands. Other densities were markedly lower. Estimated numbers of shorebirds were 62,000 (CV = 0.58), 1,804,000 (CV = 0.32), 310,000 (CV = 0.11), and 390,000 (CV = 0.35), in the Alaska Maritime, Alaska Peninsula, Yukon Delta, and Selawik study areas, respectively. The former two estimates were affected by selection bias of unknown magnitude and so should be regarded with caution. A small estimate was generated for the Yukon Delta Study Area because it covered only about 1% of the Yukon Delta NWR. We identify several species-specific estimates from our study which appear inconsistent with previous continental estimates. This pilot study provides preliminary estimates of species composition and density in the surveyed areas. By incorporating several region-specific modifications to the sampling protocols for future surveys, we believe that the Arctic PRISM method is suitable for covering large areas in western Alaska.

Alaska↗

USGS1997

Coordination and standardization of federal sedimentation activities

In August 1964, the Bureau of the Budget issued Circular A-67 to set forth guidelines for the coordination of water-data acquisition activities throughout the Federal government. The U.S. Department of the Interior was assigned the task of implementing Circular A-67, which in turn redelegated this responsibility to the U.S. Geological Survey (USGS). Delegation of the lead responsibility for water-data coordination to the USGS occurred because of its historical role as the primary agency for water-data acquisition in the United States. To provide overall leadership for implementing the provisions of Circular A-67, the USGS established the Office of Water Data Coordination in the Water Resources Division (WRD). In addition, regional and district offices of the WRD were delegated responsibility for coordinating water data within their geographic areas of responsibility. On December 10, 1991, the Office of Management and Budget issued OMB Number Memorandum M-92-01, which expands the USGS's coordination role to encompass all water information. This includes data critical to water resources in the following categories: - surface- and ground-water quality and quantity, - sediment, - constituent transport, - erosion, - water chemistry, and - precipitation information critical to water resources management. Memorandum M-92-01 covers primarily freshwater bodies and includes activities, such as "development and distribution of consensus standards, field-data collection and laboratory analytical methods, data processing and interpretation, data-base management, quality control and quality assurance, and water- resources appraisals, assessments, and investigations." Research activities are not included.

Conference Paper↗

USGS2011

Summary of hydrologic testing of the Floridan aquifer system at Fort Stewart, coastal Georgia, 2009-2010

Two test wells were completed at Fort Stewart, coastal Georgia, to investigate the potential for using the Lower Floridan aquifer as a source of water to satisfy anticipated, increased water needs. The U.S. Geological Survey, in cooperation with the U.S. Department of the Army, completed hydrologic testing of the Floridan aquifer system at the study site, including flowmeter surveys, slug tests, and 24- and 72-hour aquifer tests by mid-March 2010. Analytical approaches and model simulation were applied to aquifer-test results to provide estimates of transmissivity and hydraulic conductivity of the multilayered Floridan aquifer system. Data from a 24-hour aquifer test of the Upper Floridan aquifer were evaluated by using the straight-line Cooper-Jacob analytical method. Data from a 72-hour aquifer test of the Lower Floridan aquifer were simulated by using axisymmetric model simulations. Results of aquifer testing indicated that the Upper Floridan aquifer has a transmissivity of 100,000 feet-squared per day, and the Lower Floridan aquifer has a transmissivity of 7,000 feet-squared per day. A specific storage for the Floridan aquifer system as a result of model calibration was 3E-06 ft–1. Additionally, during a 72-hour aquifer test of the Lower Floridan aquifer, a drawdown response was observed in two Upper Floridan aquifer wells, one of which was more than 1 mile away from the pumped well.

Georgia↗

USGS2005

National parks and protected areas: Appoaches for balancing social, economic, and ecological values

The balance of nature in any strict sense has been upset long ago…The only option we have is to create a new balance objectively determined for each area in accordance with the intended use of that area.” --Aldo Leopold, 1927, in a letter to the Superintendent of Glacier National Park The planning and management staff of state/national parks and protected areas face a complex set of management problems and an uncertain future. Today, internal and external forces are combining with changes in management philosophy (from a species to an ecosystem focus) to create a new direction in natural resources management. National Parks and Protected Areas: Approaches for Balancing Social, Economic and Ecological Values is peerless in its unified treatment of the issues surrounding this subject. From decision-making for planning and management to the principles of ecology and economics, this text examines the analytical methods, information technologies, and planning and management problems associated with protected area planning and management. Protected area managers and students in undergraduate and graduate courses in natural resource management will appreciate this highly readable book.

Book↗

USGS2008

Formulations for aircraft and airfield deicing and anti-icing: aquatic toxicity and biochemical oxygen demand

The Airport Cooperative Research Program (ACRP) has sponsored research on environmental characteristics of aircraft and pavement deicers and anti-icers focusing primarily on biochemical oxygen demand (BOD) and aquatic toxicity of formulated products and individual chemical components of formulations. This report presents a background of issues leading to this research, objectives of this document, and a description of the efforts and findings of this research. Except when the distinction among products is necessary for clarity, “deicer” will refer to aircraft-deicing fluids (ADFs), aircraft anti-icing fluids (AAFs), and pavement-deicing materials (PDMs) generally. The efforts of this project have included the following: A review of regulations and specifications related to the performance and environmental characteristics of deicer formulations A review of issues related to the impact that deicers have on aquatic systems and causes of those impacts Laboratory testing of current-use deicers to establish benchmark values for aquatic toxicity, BOD, and chemical oxygen demand (COD) A review of deicer formulations under development and their relevant performanceand environmental-related characteristics A review of operational and infrastructure considerations A synopsis of current analytical methods used in environmental characterization of airport deicing runoff A toxicity-based investigation of current-use deicers to determine components responsible for toxicity and identify component classes to focus a search for alternative components Identification of gaps in knowledge and data pertaining to the above topics

Report↗

USGS2004

Occurrence of human pharmaceuticals in water resources of the United States: A review

The widespread environmental presence of some pharmaceuticals and other organic wastewater compounds has been documented globally (e.g. Buser et al. 1998; Ternes 1998; Stumpf et al.1999; Heberer et al. 2001; Kümmerer 2001; Ternes et al. 2001; Scheytt et al. 2001; Golet et al. 2002; Kolpin et al. 2002; Boyd et al. 2003; Metcalf et al. 2003). Recently, there have been several literature reviews and summary studies of the occurrence, fate, transport, and treatment of targeted human pharmaceuticals in wastewater effluent and associated environmental waters across the globe (e.g. Daughton and Ternes 1999; Sedlak et al. 2000; Suter and Giger 2000; Daughton and Jones-Lepp 2001; Jones et al. 2001; Heberer 2002; and Drewes et al. 2002). The occurrence of pharmaceutical compounds in water resources is explained by their ubiquitous use, excretion of large percentages of the mass consumed, and incomplete removal during wastewater treatment (Stumpf et al.1999). The recent increase in detection of trace concentrations (typically less than a part per billion) of pharmaceuticals in water resources across the globe reflects improvements in laboratory analytical methods (Sedlak et al. 2000) and the associated increases in field surveys. The detection of pharmaceutical compounds in large rivers in Europe and in the North Sea (Buser et al. 1998; Ternes 1998; Stumpf et al. 1999) highlighted the fact that highly soluble, trace organic compounds, such as pharmaceuticals, may escape removal in wastewater treatment, and the mixing and concentration of wastewaters through conventional wastewater treatment processes could provide a means of delivering these chemicals to environmental waters in a manner that would contaminate water resources on a large scale at trace levels (Richardson and Bowron 1985). In the United States, some of the first detections of a limited number of pharmaceutically active compounds or their transformation products were found in waters associated with landfill leachates or sewage effluent (Tabak and Bunch 1970; Garrison et al. 1976; Hignite and Azarnoff 1977; Bouwer et al. 1982; Eckel et al. 1991) decades ago. At the time of these studies, other industrial contaminants were the focus of regulatory and scientific interest; therefore, further studies on the environmental occurrence and transport of pharmaceutical compounds were rare.

Book chapter↗

USGS2016

Application of decision science to resilience management in Jamaica Bay

This book highlights the growing interest in management interventions designed to enhance the resilience of the Jamaica Bay socio-ecological system. Effective management, whether the focus is on managing biological processes or human behavior or (most likely) both, requires decision makers to anticipate how the managed system will respond to interventions (i.e., via predictions or projections). In systems characterized by many interacting components and high uncertainty, making probabilistic predictions is often difficult and requires careful thinking not only about system dynamics, but also about how management objectives are specified and the analytic method used to select the preferred action(s). Developing a clear statement of the problem(s) and articulation of management objectives is often best achieved by including input from managers, scientists and other stakeholders affected by the decision through a process of joint problem framing (Marcot and others 2012; Keeney and others 1990). Using a deliberate, coherent and transparent framework for deciding among management alternatives to best meet these objectives then ensures a greater likelihood for successful intervention. Decision science provides the theoretical and practical basis for developing this framework and applying decision analysis methods for making complex decisions under uncertainty and risk.

Book chapter↗

USGS2006

Spatial and temporal variation in sea otter demography

1) Better information on historical and current population dynamics is central to understanding patterns of growth and decline in the California sea otter population. We developed a maximum likelihood-based analytical method to estimate historical age/sex specific vital rates as well as spatial and temporal variation in vital rates from longitudinal databases on population census numbers and the age-structure of salvaged carcasses. 2) We estimated current demographic parameters by conducting a mark-recapture study, measuring survival and reproduction of 115 radio-tagged individuals between 2001 and 2004. These current estimates were compared to estimates from a similar study of radiotagged otters conducted in the mid-eighties. 3) Together, these two approaches indicated that survival has decreased substantially between the early 1990s and the present and is lowest in the north-central portion of the population's range. 4) The greatest decrease in survival was for adult females (≥ 4 years of age). Variation in the survival of this age/sex class is primarily responsible for regulating population growth and driving population trends.

Book chapter↗

USGS2002

Design and performance of limestone drains to increase pH and remove metals from acidic mine drainage, Chapter 2

Data on the construction characteristics and the composition of influent and effluent at 13 underground, limestone-filled drains in Pennsylvania and Maryland are reported to evaluate the design and performance of limestone drains for the attenuation of acidity and dissolved metals in acidic mine drainage. On the basis of the initial mass of limestone, dimensions of the drains, and average flow rates, the initial porosity and average detention time for each drain were computed. Calculated porosity ranged from 0.12 to 0.50 with corresponding detention times at average flow from 1.3 to 33 h. The effectiveness of treatment was dependent on influent chemistry, detention time, and limestone purity. At two sites where influent contained elevated dissolved Al (>5 mg/liter), drain performance declined rapidly; elsewhere the drains consistently produced near-neutral effluent, even when influent contained small concentrations of dissolved Fe^+ ( <5 mg/liter). Rates of limestone dissolution computed on the basis of average long-term Ca ion flux normalized by initial mass and purity of limestone at each of the drains ranged from 0.008 to 0.079 year -1 . Data for alkalinity concentration and flux during 11-day closed-container tests using an initial mass of 4kg crushed limestone and a solution volume of 2.3 liter yielded dissolution rate constants that were comparable to these long-term field rates. An analytical method is proposed using closed-container test data to evaluate long-term performance (longevity) or to estimate the mass of limestone needed for a limestone treatment. This method condisers flow rate, influent alkalinity, steady-state alkalinity of effluent, and desired effluent alkalinity or detention time at a future time(s) and aplies first-order rate laws for limestone dissolution (continuous) and production of alkalinity (bounded).

Book chapter↗

USGS2018

Estimating freshwater productivity, overwinter survival, and migration patterns of Klamath River Coho Salmon

An area of great importance to resource management and conservation biology in the Klamath Basin is balancing water usage against the life history requirements of threatened Coho Salmon. One tool for addressing this topic is a freshwater dynamics model to forecast Coho Salmon productivity based on environmental inputs. Constructing such a forecasting tool requires local data to quantify the unique life history processes of Coho Salmon inhabiting this region. Here, we describe analytical methods for estimating a series of sub-models, each capturing a different life history process, which will eventually be synchronized as part of a freshwater dynamics model for Klamath River Coho Salmon. Specifically, we draw upon extensive population monitoring data collected in the basin to estimate models of freshwater productivity, overwinter survival, and migration patterns. Our models of freshwater productivity indicated that high summer temperatures and high winter flows can both adversely affect smolt production and that such relationships are more likely in tributaries with naturally regulated flows due to substantial intraannual environmental variation. Our models of overwinter survival demonstrated extensive variability in survival among years, but not among rearing locations, and demonstrated that a substantial proportion (~ 20%) of age-0+ fish emigrate from some rearing sites in the winter. Our models of migration patterns indicated that many age-0+ fish redistribute in the basin during the summer and winter. Further, we observed that these redistributions can entail long migrations in the mainstem where environmental stressors likely play a role in cueing refuge entry. Finally, our models of migration patterns indicated that changes in discharge are important in cueing the seaward migration of smolts, but that the nature of this behavioral response can differ dramatically between tributaries with naturally and artificially regulated flows. Collectively, these analyses demonstrate that environmental variation interacts with most phases of the freshwater life history of Klamath River Coho Salmon and that anthropogenic environmental variation can have a particularly large bearing on productivity.

Arcata Fisheries Technical Report↗