SEARCH · USGS Science

Results for “Transactions of the American Fishery Society”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 55 records · Page 3Linked to original sources

USGS2013

Snake River fall Chinook salmon life history investigations: Annual report 2011 (April 2011 - March 2012)

Executive Summary Chapter One – This chapter was published in the Transactions of the American Fisheries Society in 2012. We conducted a three-year radiotelemetry study in the lower Snake River to answer the questions: do fall Chinook salmon juveniles pass dams during winter when bypass systems and structures designed to prevent mortality are not operated; does downstream movement rate vary annually, seasonally, and from reservoir to reservoir; and, what are some of the factors that contribute to annual, seasonal, and spatial variation in downstream movement rate? Fall Chinook salmon juveniles moved downstream up to 169 km and fast enough (7.5 km/d) such that large percentages (up to 93%) of the fish passed one or more dams during winter. Mean downstream movement rate varied annually (9.2-11.3 km/d), increased from winter (7.5 km/d) to spring (16.4 km/d), and increased (6.9-16.8 km/d) as fish moved downstream from reservoir to reservoir. Fish condition factor at tagging explained some of the annual variation ( P ≤ 0.01) in downstream movement rate, whereas water particle velocity ( P ≤0.0001) and temperature ( P ≤0.0001) explained portions of the seasonal variation. An increase in migrational disposition as fish moved downstream helped explain the spatial variation ( P =0.05-0.07). The potential cost of winter movement might be reduced survival due to turbine passage when the bypass systems and spillway passage structures are not operated. Efforts to understand and increase passage survival of winter migrants in large impoundments might help to rehabilitate some imperiled anadromous salmonid populations. Chapter Two – Natural juvenile fall Chinook salmon in the Snake and Clearwater rivers exhibit two life history strategies. “Ocean-type” fish migrate out to the ocean in their first summer of life as subyearlings, but “reservoir-type” fish delay seaward migration during the summer, and some overwinter in reservoirs before continuing their migration the following spring as yearlings. Earlier emerging fish produced in the Snake River tend to adopt the ocean-type life history whereas many of the later emerging fish from the Clearwater River tend to adopt the reservoirtype life history. The underlying cause of the reservoir-type life history is poorly understood, but we believe there may be link to physiological development. We used traditional markers of the parr-smolt transformation (smoltification), including gill Na + /K + -ATPase activity and thyroid hormone levels, along with gene expression microarrays to assess the development of ocean-type juvenile fall Chinook salmon and then compared it to that of juvenile fall Chinook salmon from the Clearwater River. We showed that parr in the Snake River are physiologically distinct from actively-migrating smolts but smolts migrating early and late in the summer and fall are physiologically similar. Juvenile fall Chinook salmon collected from the Clearwater River were similar in size to early-migrating smolts in the Snake River but were most physiologically similar to Snake River parr. Genes differentially expressed between Snake River parr and smolts and between fish from the Clearwater River and smolts from the Snake River were involved in the cell cycle, steroid metabolism and other metabolic pathways, and DNA repair and packaging. Many of the genes differentially expressed in these comparisons had expression patterns that correlated with gill Na + /K + -ATPase activity, suggesting that they were related to smoltification and migration status. Chapter Three – Natural subyearlings produced in the Clearwater River are exposed to cool (~10-12°C) temperatures when water is released from Dworshak Reservoir for summer flow augmentation. Total dissolved gas (TDG) levels range from 100-110% in the lower Clearwater iv River. When fish move into the Snake River, they encounter temperatures up to 24°C at the surface which have the potential to incur gas bubble disease (GBD) in fish as dissolved gases in their bodies expand under warmer temperatures. This may result in both direct and indirect mortality, but this situation has been little studied. We conducted laboratory experiments to examine subyearling mortality rates and incidence and severity of GBD in fish that were moved between waters that varied in TDG and temperature. Fish experienced significant mortality only at temperatures of 25°C, which increased with exposure time. However there was no significance difference in mortality between fish acclimated to 100% TDG and 110% TDG. Fish that died did show signs of GBD. Generally, signs of GBD such as bubbles in the lateral line and unpaired fins were higher in fish acclimated at 110% TDG than in fish acclimated at 100% TDG, but there were few trends related to exposure temperature. Field measurements of TDG showed that TDG ranged from about 100% to 122.5% at some locations. Generally, TDG fluctuated daily, up to 8% during August and early September, and was highest late in the afternoon and lowest in the early morning. Laboratory results and field monitoring demonstrated that emigrating juvenile salmon can potentially be at risk from elevated temperatures, TDG, and GBD albeit to an unknown extent, which may increase their vulnerability to predation. Chapter Four – We conducted monthly beam trawling in Lower Granite and Little Goose reservoirs to describe the seasonal abundance of benthic epifauna that are potentially important as prey to juvenile fall Chinook salmon. The predominant taxa collected were Siberian prawns, the opossum shrimp Neomysis mercedis , and the amphipod Corophium sp. Prawns were relatively abundant at shallow sites in both reservoirs in June, but were more abundant at deep sites in lower and middle reservoir reaches in autumn. Prawn densities were commonly <0.2/m2. Prawn length-frequency data indicated that there were at least two size classes. Juvenile prawns present in shallow water more often than adult prawns, which were generally only found in deep water by autumn. Ovigerous prawns had an average of 171 eggs, which represented about 11.5% of their body weight. Limited diet analyses suggested that prawns consumed Corophium , Neomysis , and aquatic insects. Neomysis dominated all catches both in terms of abundance and biomass, and they were more abundant in Lower Granite compared to Little Goose reservoir. Neomysis were more abundant at shallow sites than at deep sites. Corophium were present in our collections but were never abundant, probably because our trawl was not effective at capturing them. The caloric content of prawns (4,782 Kcal), Neomysis (4,962 Kcal), and Corophium (4,926 Kcal) indicates that these prey would be energetically profitable for juvenile salmon. Subyearling fall Chinook salmon prey heavily on Neomysis and Corophium at times, but the importance of prawns as prey is uncertain.

Oregon, Washington↗

USGS2011

Determinants of fish assemblage structure in Northwestern Great Plains streams

Prairie streams are known for their harsh and stochastic physical conditions, and the fish assemblages therein have been shown to be temporally variable. We assessed the spatial and temporal variation in fish assemblage structure in five intermittent, adventitious northwestern Great Plains streams representing a gradient of watershed areas. Fish assemblages and abiotic conditions varied more spatially than temporally. The most important variables explaining fish assemblage structure were longitudinal position and the proportion of fine substrates. The proportion of fine substrates increased proceeding upstream, approaching 100% in all five streams, and species richness declined upstream with increasing fine substrates. High levels of fine substrate in the upper reaches appeared to limit the distribution of obligate lithophilic fish species to reaches further downstream. Species richness and substrates were similar among all five streams at the lowermost and uppermost sites. However, in the middle reaches, species richness increased, the amount of fine substrate decreased, and connectivity increased as watershed area increased. Season and some dimensions of habitat (including thalweg depth, absolute distance to the main-stem river, and watershed size) were not essential in explaining the variation in fish assemblages. Fish species richness varied more temporally than overall fish assemblage structure did because common species were consistently abundant across seasons, whereas rare species were sometimes absent or perhaps not detected by sampling. The similarity in our results among five streams varying in watershed size and those from other studies supports the generalization that spatial variation exceeds temporal variation in the fish assemblages of prairie and warmwater streams. Furthermore, given longitudinal position, substrate, and stream size, general predictions regarding fish assemblage structure and function in prairie streams are possible. ?? American Fisheries Society 2011.

Transactions of the American Fisheries Society↗

USGS2011

Two alternative juvenile life history types for fall Chinook salmon in the Snake River basin

Fall Chinook salmon Oncorhynchus tshawytscha in the Snake River basin were listed under the Endangered Species Act in 1992. At the time of listing, it was assumed that fall Chinook salmon juveniles in the Snake River basin adhered strictly to an ocean-type life history characterized by saltwater entry at age 0 and first-year wintering in the ocean. Research showed, however, that some fall Chinook salmon juveniles in the Snake River basin spent their first winter in a reservoir and resumed seaward movement the following spring at age 1 (hereafter, reservoir-type juveniles). We collected wild and hatchery ocean-type fall Chinook salmon juveniles in 1997 and wild and hatchery reservoir-type juveniles in 1998 to assess the condition of the reservoir-type juveniles at the onset of seaward movement. The ocean-type juveniles averaged 112-139 mm fork length, and the reservoir-type juveniles averaged 222-224 mm fork length. The large size of the reservoir-type juveniles suggested a high potential for survival to salt water and subsequent return to freshwater. Scale pattern analyses of the fall Chinook salmon spawners we collected during 1998-2003 supported this point. Of the spawners sampled, an overall average of 41% of the wild fish and 51% of the hatchery fish had been reservoir-type juveniles. Males that had been reservoir-type juveniles often returned as small "minijacks" (wild, 16% of total; hatchery, 40% of total), but 84% of the wild males, 60% of the hatchery males, and 100% of the wild and hatchery females that had been reservoir-type juveniles returned at ages and fork lengths commonly observed in populations of Chinook salmon. We conclude that fall Chinook salmon in the Snake River basin exhibit two alternative juvenile life histories, namely ocean-type and reservoir-type. ?? Copyright by the American Fisheries Society 2005.

Idaho, Oregon, Washington↗

USGS2011

PEPA-1* genotype affects return rate for hatchery steelhead

Allozymes continue to be useful as genetic markers in a variety of studies; however, their utility often hinges on the selective neutrality of the allelic variation. Our study tested for neutrality between the two most common alleles (*100 and *110) at the cytosol nonspecific dipeptidase locus (PEPA-1*) in steelhead Oncorhynchus mykiss from Dworshak National Fish Hatchery in Idaho. We tested for differential growth and survival among fish with the * 100/100, *100/ 110, and *110/110 genotypes rearing in a hatchery or a natural stream. We repeated the study for two year-classes, using heterozygous (*100/110) adults to make the experimental crosses. This design avoided differences in family contribution among genotypes because each cross produced all three genotypes. We divided the progeny from each family into two groups. One group was reared in a hatchery for 1 year and then released for migration to the sea and subsequent return to the hatchery as adults. The other group was released into a natural stream and monitored for 3 years. We found no significant differences in size or survival among PEPA-1* genotypes for either the naturally reared fish or the hatchery-reared fish immediately prior to release as smolts. For females, survival to returning adult also was similar among genotypes; however, hatchery-reared males with the *110/110 genotype returned at a higher rate than did males with the *100/ 100 genotype; heterozygous males were intermediate. These results indicate that selection occurs at the PEPA-1* locus or at one or more loci tightly linked to it. The finding of nearly equal frequencies for these two alleles in the source population suggests that selection differentials among genotypes reverse or vary from year to year; otherwise, steady directional selection would drive the *100 allele to low frequencies or extinction. Locus PEPA-1* seems inappropriate for genetic marks in studies of steelhead that span the full life cycle and probably should be avoided for any portion of the life cycle. Inferences about gene flow and population structure from studies that are substantially influenced by PEPA-1* allele frequencies might be misleading. ?? Copyright by the American Fisheries Society 2006.

Transactions of the American Fisheries Society↗

USGS2011

Genetic identity of brook trout in Lake Superior south shore streams: Potential for genetic monitoring of stocking and rehabilitation efforts

Rehabilitation of migratory ('coaster') brook trout Salvelinus fontinalis along Lake Superior's south shore is a topic of high interest among resource stakeholders and management agencies. Proposed strategies for rehabilitation of this brook trout life history variant in Wisconsin include supplemental stocking, watershed management, habitat rehabilitation, harvest regulations, or a combination thereof. In an effort to evaluate the success of coaster brook trout rehabilitation efforts, we collected genetic data from four populations of interest (Whittlesey Creek, Bois Brule River, Bark River, and Graveyard Creek) and the hatchery sources used in the Whittlesey Creek supplementation experiment. We characterized the genetic diversity of 30 individuals from each of four populations using 13 microsatellite DNA loci. Levels of genetic variation were consistent with those in similar studies conducted throughout the basin. Significant genetic variation among the populations was observed, enabling adequate population delineation through assignment tests. Overall, 208 of the 211 sampled fish (98.6%) were correctly assigned to their population of origin. Simulated F1 hybrids between two hatchery strains and the Whittlesey Creek population were identifiable in the majority of attempts (90.5-100% accuracy with 0-2.5% error). The genetic markers and analytical techniques described provide the ability to monitor the concurrent coaster brook trout rehabilitation efforts along Wisconsin's Lake Superior south shore, including the detection of hybridization between hatchery and native populations. ?? Copyright by the American Fisheries Society 2008.

Transactions of the American Fisheries Society↗

USGS2011

Application of a multistate model to estimate culvert effects on movement of small fishes

While it is widely acknowledged that culverted road-stream crossings may impede fish passage, effects of culverts on movement of nongame and small-bodied fishes have not been extensively studied and studies generally have not accounted for spatial variation in capture probabilities. We estimated probabilities for upstream and downstream movement of small (30-120 mm standard length) benthic and water column fishes across stream reaches with and without culverts at four road-stream crossings over a 4-6-week period. Movement and reach-specific capture probabilities were estimated using multistate capture-recapture models. Although none of the culverts were complete barriers to passage, only a bottomless-box culvert appeared to permit unrestricted upstream and downstream movements by benthic fishes based on model estimates of movement probabilities. At two box culverts that were perched above the water surface at base flow, observed movements were limited to water column fishes and to intervals when runoff from storm events raised water levels above the perched level. Only a single fish was observed to move through a partially embedded pipe culvert. Estimates for probabilities of movement over distances equal to at least the length of one culvert were low (e.g., generally ???0.03, estimated for 1-2-week intervals) and had wide 95% confidence intervals as a consequence of few observed movements to nonadjacent reaches. Estimates of capture probabilities varied among reaches by a factor of 2 to over 10, illustrating the importance of accounting for spatially variable capture rates when estimating movement probabilities with capture-recapture data. Longer-term studies are needed to evaluate temporal variability in stream fish passage at culverts (e.g., in relation to streamflow variability) and to thereby better quantify the degree of population fragmentation caused by road-stream crossings with culverts. ?? American Fisheries Society 2009.

Transactions of the American Fisheries Society↗

USGS2011

Abnormalities in larvae from the once-largest Pacific herring population in Washington State result primarily from factors independent of spawning location

Among larvae from populations of Pacific herring Clupea pallasii in Washington State those from Cherry Point have consistently demonstrated abnormalities indicative of distress, including low weights and lengths at hatch, increased prevalences of skeletal abnormalities, and shorter survival times in food deprivation studies. The biomass of adult, prespawn Pacific herring at Cherry Point declined from 13,606 metric tons in 1973 to a record low 733 metric tons in 2000. However, correlation of larval abnormalities with adult recruitment was weak, indicating that the larval abnormalities did not directly cause the decline. Larval abnormalities originated primarily from factors independent of conditions at the spawning location because they were not reproduced by incubation of foreign zygotes along the Cherry Point shoreline but were reproduced after the development of indigenous zygotes in controlled laboratory conditions. Although the precise cause of the abnormalities was not determined, recent zoographic trends in elevated natural mortality among adult Pacific herring and resulting reduced age structures may be involved. ?? Copyright by the American Fisheries Society 2005.

Transactions of the American Fisheries Society↗

USGS1997

Food habits of Atlantic sturgeon off the central New Jersey coast

Limited information exists on the marine diet of the Atlantic sturgeon Acipenser oxyrinchus oxyrinchus . We examined the food habits of 275 Atlantic sturgeon (total length, 106–203 cm) caught in the commercial fishery off the coast of New Jersey. Stomachs were provided by fishermen. Significantly more stomachs were empty in the spring than in the fall. Sand and organic debris were a major component in the stomachs (26.3–75.4% by weight). Polycheates were the primary prey group consumed, although the isopod Politolana concharum was the most important individual prey eaten. Mollusks and fish contributed little to the diet. Some prey taxa (i.e., polychaetes, isopods, amphipods) exhibited seasonal variation in importance in the diet of Atlantic sturgeon. Identification of the offshore diet of Atlantic sturgeon is an important step in developing a better understanding of the life history requirements and marine ecology of this species.

New Jersey↗

USGS2011

Characterization of the physiological stress response in lingcod

The goal of this study was to describe the duration and magnitude of the physiological stress response in lingcod Ophiodon elongatus after exposure to brief handling and sublethal air stressors. The response to these stressors was determined during a 24-h recovery period by measuring concentrations of plasma cortisol, lactate, glucose, sodium, and potassium. Lingcod were subjected to brief handling followed by either a 15-min or a 45-min air stressor in the laboratory. After the 15-min stressor, an increase in cortisol or glucose could not be detected until after 5 min of recovery. Peak concentrations were measured after 30 min for cortisol and after 60 min for glucose and lactate. Glucose and lactate had returned to basal levels after 12 h, whereas cortisol did not return to basal levels until after 24 h of recovery. Immediately following a 45-min air stressor, all measured parameters were significantly elevated over levels in prestressor control fish. Cortisol concentrations tended to increase and reached a measured peak after 8 h of recovery, whereas glucose and lactate reached a measured peak after 1 h of recovery. Cortisol and lactate returned to basal levels within 24 h. Glucose, however, remained elevated even after 24 h of recovery. Plasma ions initially increased during the first hour of recovery, and the concentrations then declined to a level below that measured in control fish for the remainder of the 24-h recovery period. In addition, we evaluated the effect of fish size on the stress response. There was no significant difference between the stress response of smaller (41-49-cm [total length] and larger (50-67-cm) lingcod after 45 min air exposure. In general, both the magnitude and duration of the primary and secondary stress responses in lingcod are comparable to those of salmonids. ?? Copyright by the American Fisheries Society 2006.

Transactions of the American Fisheries Society↗

USGS2022

Seasonal movements and spatial overlap of juvenile and adult lake sturgeon in Lake Champlain

The lake sturgeon Acipenser fulvescens is a large, long-lived, potamodromous species that is widely distributed throughout freshwater systems in the central part of North America. In this study, we used acoustic telemetry to examine seasonal distribution and movement patterns of endangered Lake Sturgeon in Lake Champlain, Vermont. Acoustic tags were implanted in 29 juvenile Lake Sturgeon (453–874 mm TL) and 19 adults (1,215–1,615 mm TL) from the Winooski River and nearby areas of Lake Champlain between 2015 and 2019; tags were detected with 23 passive acoustic receivers deployed in the river and delta area and an additional 34 receivers deployed throughout Lake Champlain. Home range analysis using a lattice-based density estimator indicated that juvenile home range sizes were the same as adult home range sizes in spring and summer but were statistically larger than adult home ranges in winter. Cumulative home range analysis showed that juvenile and adult home ranges overlapped in shallow (<10-m) water in the summer and fall. In winter and spring, cumulative home ranges from juveniles included deepwater sites (>25 m), while adults remained in shallow water near the mouth of their spawning river. Seven juveniles made long-range movements (18–34 km) during the winter and spring months, and 13 juveniles moved back into the lower section of their natal river after overwintering in Lake Champlain. This study is the first to directly compare adult and juvenile Lake Sturgeon distribution, home range size, movements, and habitat use in a large lake system and provides a baseline for further research on the movement ecology of Lake Sturgeon in Lake Champlain.

Vermont↗

USGS2023

Declines in prey production during the collapse of a tailwater Rainbow Trout population are associated with changing reservoir conditions

Objective Understanding how energy moves through food webs and limits productivity at various trophic levels is a central question in aquatic ecology and can provide insight into drivers of fish population dynamics since many fish populations are food limited. In this study, we seek to better understand what factors drove a decline of >85% in the number of Rainbow Trout Oncorhynchus mykiss found in the tailwater portion of the Colorado River below Glen Canyon Dam during 2012–2016. Methods We estimate the production of dominant prey using data from previously published studies of Rainbow Trout abundance and growth alongside drift and diet samples. We test how prey production correlates to both proximate (e.g., nutrients) and distal (e.g., limnological conditions in the upriver reservoir) drivers. Result Results suggest that gross consumption of invertebrate prey by the Rainbow Trout population declined from an annual mean of 423 to 69 kg/d. Daily production rates of dominant prey in aggregate declined from a high of 0.173 to 0.018 g·m −2 ·d −1 . Chironomids accounted for 70% of the decline in prey production. Foraging efficiency by Rainbow Trout (range, 0.99–0.67) was high across the range of prey production rates. After the Rainbow Trout population had declined by ~90%, prey consumption saturated at higher rates of prey production and the gross quantity of daily drift exported from the reach increased from 8.9 to 12.7 kg/d. Conclusion Rainbow Trout population dynamics are largely influenced by changes in prey production, which is itself driven by soluble reactive phosphorus ( SRP ) concentrations in the reservoir. The SRP model predicted that prey production would increase by 32 kg/d (SE, 9) for each 1 μg/L increase in SRP . These concentrations were indirectly influenced by reservoir hydrology and biogeochemistry, linkages that may extend far beyond the confines of this tailwater fishery and into the downstream reaches of the Grand Canyon's Colorado River ecosystem. Impact Statement We combined Rainbow Trout diet, growth, and abundance estimates with concentrations of drifting invertebrates to estimate the biomass of Rainbow Trout prey produced over time. Trends in prey biomass production track trends in phosphorous concentrations in the river.

Arizona↗

USGS2023

Reach-scale associations between introduced Brook Trout and juvenile and stream-resident Bull Trout in Idaho

Objective Native Bull Trout Salvelinus confluentus populations can be influenced by a variety of stressors operating at multiple spatial scales, making the relative importance of biotic versus abiotic controls difficult to discern at small scales where monitoring and management typically occur. Nonnative Brook Trout S. fontinalis were widely introduced throughout western North America and negatively affect Bull Trout occurrence. Here, we examine reach-scale associations between nonnative Brook Trout and juvenile and stream-resident Bull Trout (i.e., <250 mm) abundances through the lens of a constraining threshold, where nonnative fish exceeding a certain fish density may constrain native fish abundance. Methods We used a large spatial data set to define the abiotic conditions in which stream-dwelling Brook Trout and Bull Trout smaller than 250 mm typically co-occur in Idaho. Next, we queried multipass electrofishing survey data collected in reaches with abiotic conditions suitable for both species within localized areas where their distributions overlap. We then used two-dimensional Kolmogorov–Smirnov tests to identify threshold Brook Trout densities beyond which Bull Trout less than 250 mm were consistently rare or absent. Result Bull Trout smaller than 250 mm were rare or absent where Brook Trout density exceeded 0.54 fish/100 m 2 across the full range of abiotic conditions over which both species overlapped. However, Brook Trout rarely occurred in habitats associated with high Bull Trout density (e.g., where mean August water temperatures were 8.2°C). Conclusion Our results support existing hypotheses that the long-term co-occurrence of Bull Trout and Brook Trout in stream reaches suitable for both species may be unstable. Because low densities of Brook Trout appear to threaten Bull Trout, additional research is needed to better understand factors driving ongoing range shifts and invasion dynamics in Bull Trout habitat. We provide a simple tool to inform where Brook Trout represent a primary threat to Bull Trout, with potential applications for future monitoring, threat assessments, and conservation efforts.

Idaho↗

USGS2024

Developing a predictive model to identify Sea Lamprey parasitism on Lake Trout using biologgers

Objective Sea Lamprey Petromyzon marinus remain problematic for Lake Trout Salvelinus namaycush restoration in the Laurentian Great Lakes. Fisheries assessments would benefit from knowledge of spatial–temporal patterns of Sea Lamprey parasitism on Lake Trout; however, such patterns are challenging to estimate from wounding rates on caught Lake Trout. Electronic tags have been used to identify distinct fish behaviors (e.g., foraging or spawning) using measurements of acceleration or heart rate. We hypothesized that Sea Lamprey attachment would elicit changes in the heart rate and swimming behavior of Lake Trout. Here, we determined whether tagging devices could record these changes and whether we could accurately predict lamprey attachment on Lake Trout using these recordings. Methods Adult Lake Trout (n = 34) were implanted with acceleration and heart rate tags and then were subjected to Sea Lamprey parasitism within a laboratory setting. Approximately 70 different acceleration and heart rate metrics were collected and tried as predictors of lamprey attachment. The top variables were used to train random forest models and then tried on test data sets. The accuracy of these models was then validated using a jackknife approach. Result Metrics related to body orientation and heart rate were identified as the best predictors of Sea Lamprey attachment. The best models predicted lamprey attachments with high accuracy; however, individual‐level jackknife tests resulted in less accurate cross‐individual prediction and regularly predicted false negatives. These findings may be related to individual variance in the Lake Trout response to attachment, but there was evidence that the shifting of tags after implantation impacted predictive performance, which could be remedied with adjustments during implantation. Conclusions Our study highlights the potential to use tagging devices for quantifying Sea Lamprey attachments on Lake Trout in the wild. Further development appears necessary; however, once improved, these predictive models have the potential to generate field‐based estimates of Sea Lamprey attack rates on Lake Trout.

Transactions of American Fisheries Society↗

USGS2011

Effects of fish size, habitat, flow, and density on capture probabilities of age-0 rainbow trout estimated from electrofishing at discrete sites in a large river

We estimated size-specific capture probabilities of age-0 rainbow trout Oncorhynchus mykiss in the Lee's Ferry Reach of the Colorado River, Arizona, by backpack and boat electrofishing at discrete shoreline sites using both depletion and mark-recapture experiments. Our objectives were to evaluate the feasibility of estimating capture probability for juvenile fish in larger rivers; to determine how it is influenced by fish size, habitat, flow, density, and recovery period; and to test population closure assumptions. There was no mortality among the 351 rainbow trout that were captured by electrofishing, marked, and held for 24 h. Of a total of 2,966 fish that were marked and released, only 0.61% were captured outside of mark-recapture sites, and total emigration from mark-recapture sites was 2.2-2.6%. These data strongly suggest that populations within discrete sites can be treated as effectively closed for the 24-h period between marking and recapture. Eighty percent of capture probability estimates from 66 depletion experiments and 42 mark-recapture experiments ranged from 0.28 to 0.75 and from 0.17 to 0.45, respectively, and the average coefficient of variation of estimates was 0.26. There was strong support for a fish size-capture probability relationship that accounted for the differences in vulnerability across habitat types. Smaller fish were less vulnerable in high-angle shorelines that were sampled by boat electrofishing. There was little support for capture probability models that accounted for within-day and across-month variation in flow. The effects of fish density on capture probability were challenging to discern, variable among habitat types and estimation methodologies, and confounded with the effect of fish size. As capture probability estimates were generally precise and the closure assumption was met, our results demonstrate that electrofishing-based mark-recapture experiments at discrete sites can be used to estimate the abundance of juvenile fish in large rivers.

Arizona↗

USGS2019

Evaluation of Potential Translocation Sites for an Imperiled Cyprinid, theHornyhead Chub

Translocation of isolated species into suitable habitats may help secure vulnerable, geographically limited species. Due to the decline of Wyoming Hornyhead Chub Nocomis biguttatus , conservation actions such as translocation of populations within the plausible historical range are being considered to improve population redundancy and resiliency to disturbance events. Translocation of Wyoming Hornyhead Chub must be rigorously evaluated because a hatchery stock does not exist, so all fish used in translocations will come from the wild population. We present an approach to identify best available translocation sites prior to translocation efforts taking place. We evaluated fish community composition and habitat conditions at 54 potential translocation sites for Hornyhead Chub within 12 streams of the North Platte River Basin of Wyoming. We used two analyses to identify translocation sites most similar to currently occupied Hornyhead Chub sites on the Laramie River: hurdle models to predict hypothetical abundance of Hornyhead Chub at translocation sites and non-metric multidimensional scaling (NMDS) with fish community and habitat conditions. Presence and abundance of Hornyhead Chub was related to lack of nonnative predators and habitat features characteristic of backwater and velocity refuge habitats. We used a rank scoring system to weight the outcomes of each analysis and the highest ranking translocation sites occurred at a historical locality, the Sweetwater River. Our approach may be appropriate for other at-risk species with isolated distributions and little historical data.

Wyoming↗

USGS2018

Behavior and reproductive ecology of the Sicklefin Redhorse: An imperiled southern Appalachian Mountain fish

Many nongame fishes are poorly understood but are essential to maintaining healthy aquatic ecosystems globally. The undescribed Sicklefin Redhorse Moxostoma sp. is a rare, imperiled, nongame fish endemic to two southern Appalachian Mountain river basins. Little is known of its behavior and ecology, but this information is urgently needed for conservation planning. We assessed the spatial and temporal bounds of spawning migration, quantified seasonal weekly movement patterns, and characterized seasonal and spawning behavior using radiotelemetry and weir sampling in the Hiwassee River basin, North Carolina–Georgia, during 2006 and 2007. Hiwassee River tributaries were occupied predominantly during the fish's spawning season, lower reaches of the tributaries and the Hiwassee River were primarily occupied during the postspawning season (i.e., summer and fall), and lower lotic reaches of Hiwassee River (upstream from Hiwassee Lake) were occupied during winter. Adults occupied Hiwassee Lake only as a movement corridor during spawning migrations. Both sexes conducted upstream spawning migrations simultaneously, but males occupied spawning tributaries longer than females. Sicklefin Redhorse exhibited interannual spawning‐area and tributary fidelity. Cold water temperatures associated with hypolimnetic releases from reservoirs and meteorological conditions influenced spawning migration distance and timing. During 2007, decreased discharges during the spawning season were associated with decreases in migration distance and spawning tributary occupancy duration. Foraging was the dominant behavior observed annually, followed by reproductive behaviors (courting and spawning) during the spawning season. No agonistic reproductive behavior was observed, but females exhibited a repetitious postspawning digging behavior that may be unique in the family Catostomidae. Our findings suggest that protection and restoration of river continuity, natural flow regimes, seasonally appropriate water temperatures, and geographic range expansion are critical components to include in Sicklefin Redhorse conservation planning. Fisheries and ecosystem managers can use our findings to justify sensitive management decisions that conserve and restore critical streams and rivers occupied by this imperiled species.

Hiwassee River↗

USGS2018

Fall and winter microhabitat use and suitability for spring chinook salmon parr in a U.S. Pacific Northwest River

Habitat degradation has been implicated as a primary threat to Pacific salmon Oncorhynchus spp. Habitat restoration and conservation are key toward stemming population declines; however, winter microhabitat use and suitability knowledge are lacking for small juvenile salmonids. Our objective was to characterize microhabitat use and suitability for spring Chinook Salmon Oncorhynchus tshawytscha parr during fall and winter. Using radiotelemetry techniques during October–February (2009–2011), we identified fall and winter microhabitat use by spring Chinook Salmon parr in Catherine Creek, northeastern Oregon. Tagged fish occupied two distinct gradient reaches (moderate and low). Using a mixed‐effects logistic regression resource selection function (RSF) model, we found evidence that microhabitat use was similar between free‐flowing and surface ice conditions. However, habitat use shifted between seasons; most notably, there was greater use of silt substrate and areas farther from the bank during winter. Between gradients, microhabitat use differed with greater use of large wood (LW) and submerged aquatic vegetation in the low‐gradient reach. Using a Bayesian RSF approach, we developed gradient‐specific habitat suitability criteria. Throughout the study area, deep depths and slow currents were most suitable, with the exception of the low‐gradient reach where moderate depths were optimal. Near‐cover coarse and fine substrates were most suitable in the moderate‐ and low‐gradient reaches, respectively. Near‐bank LW was most suitable throughout the study area. Multivariate principal component analyses (PCA) indicated co‐occurring deep depths supporting slow currents near cover were intensively occupied in the moderate‐gradient reach. In the low‐gradient reach, PCA indicated co‐occurring moderate depths, slow currents, and near‐bank cover were most frequently occupied. Our study identified suitable and interrelated microhabitat combinations that can guide habitat restoration for fall migrant and overwintering Chinook Salmon parr in Catherine Creek and potentially the Pacific Northwest.

Oregon↗

USGS2018

Lake Sturgeon, Lake Whitefish, and Walleye egg deposition patterns with response to fish spawning substrate restoration in the St. Clair–Detroit River system

Egg deposition and use of restored spawning substrates by lithophilic fishes (e.g., Lake Sturgeon Acipenser fulvescens , Lake Whitefish Coregonus clupeaformis , and Walleye Sander vitreus ) were assessed throughout the St. Clair–Detroit River system from 2005 to 2016. Bayesian models were used to quantify egg abundance and presence/absence relative to site-specific variables (e.g., depth, velocity, and artificial spawning reef presence) and temperature to evaluate fish use of restored artificial spawning reefs and assess patterns in egg deposition. Lake Whitefish and Walleye egg abundance, probability of detection, and probability of occupancy were assessed with detection-adjusted methods; Lake Sturgeon egg abundance and probability of occurrence were assessed using delta-lognormal methods. The models indicated that the probability of Walleye eggs occupying a site increased with water velocity and that the rate of increase decreased with depth, whereas Lake Whitefish egg occupancy was not correlated with any of the attributes considered. Egg deposition by Lake Whitefish and Walleyes was greater at sites with high water velocities and was lower over artificial spawning reefs. Lake Sturgeon eggs were collected least frequently but were more likely to be collected over artificial spawning reefs and in greater abundances than elsewhere. Detection-adjusted egg abundances were not greater over artificial spawning reefs, indicating that these projects may not directly benefit spawning Walleyes and Lake Whitefish. However, 98% of the Lake Sturgeon eggs observed were collected over artificial spawning reefs, supporting the hypothesis that the reefs provided spawning sites for Lake Sturgeon and could mitigate historic losses of Lake Sturgeon spawning habitat.

Transactions of the American Fisheries Society↗