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Ecological engineering with oysters enhances coastal resilience efforts

Coastal areas are especially vulnerable to habitat loss, sea-level rise, and other climate change effects. Oyster-dominated eco-engineered reefs have been promoted as integral components of engineered habitats enhancing coastal resilience through provision of numerous ecological, morphological, and socio-economic services. However, the assessed ‘success’ of these eco-engineered oyster reefs remains variable across projects and locations, with their general efficacy in promoting coastal resilience, along with related services, often mixed at best. Understanding factors influencing the success of these eco-engineered habitats as valuable coastal management tools could greatly inform related future efforts. Here, we review past studies incorporating reef-building oysters for coastal resilience and enhanced ecosystem services. Our aims are to better understand their utility and limitations, along with critical knowledge gaps to better advance future applicability. Success depends largely on site selection, informed by physical, chemical and biological factors, and adjacent habitats and bottom types. Better understanding of oyster metapopulation dynamics, tolerance and adaptation to changing conditions, and interactions with adjacent habitats will help to better identify suitable locations, and design more effective eco-engineered reefs. These eco-engineered reefs provide a useful tool to assist in developing coastal resilience in the face of climate change and sea level rise.

Ecological Engineering

10,000 m under the sea: An overview of the HADES expedition to Kermadec Trench

The hadal zone of the world oceans (6000– 11,000 m) occupies <1% of the marine realm and is found almost exclusively in trenches but represents ~40% of the total ocean depth range. Jamison et al. (2010 & Jamison, 2015) have reviewed the current state of knowledge about the hydrology, physical characteristics, food supply, ecology and biodiversity of life in hadal trenches. This review concluded that, there appears to be a high level of endemism based on the few specimens collected from historical sampling efforts in the 1950s (Danish Galathea and Soviet Vitjaz expeditions), but because trenches are still largely unexplored there is a lot we do not know about the ecological structure and functioning of hadal environments. However, relatively recent advances in technology using remotely operated vehicles (ROV) and landers can help us explore hadal trenches in greater detail.

Conference Paper

Climate change science and modeling

This chapter provides a brief background on climate change science, climate simulation models, and models that project the impacts of changes in climate on tree species and ecosystems. Throughout the chapter, boxes list resources for more information on each topic. A more detailed scientific review of climate change science, trends, and modeling can be found in the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (IPCC 2014), and the Fourth National Climate Assessment (U.S. Global Climate Research Program [USGCRP] 2017).

Delaware, Maryland, New Jersey, New York, Pennsylv

What is a biocrust? A refined, contemporary definition for a broadening research community

Studies of biological soil crusts (biocrusts) have proliferated over the last few decades. The biocrust literature has broadened, with more studies assessing and describing the function of a variety of biocrust communities in a broad range of biomes and habitats and across a large spectrum of disciplines, and also by the incorporation of biocrusts into global perspectives and biogeochemical models. As the number of biocrust researchers increases, along with the scope of soil communities defined as ‘biocrust’, it is worth asking whether we all share a clear, universal, and fully articulated definition of what constitutes a biocrust. In this review, we synthesize the literature with the views of new and experienced biocrust researchers, to provide a refined and fully elaborated definition of biocrusts. In doing so, we illustrate the ecological relevance and ecosystem services provided by them. We demonstrate that biocrusts are defined by four distinct elements: physical structure, functional characteristics, habitat, and taxonomic composition. We describe outgroups, which have some, but not all, of the characteristics necessary to be fully consistent with our definition and thus would not be considered biocrusts. We also summarize the wide variety of different types of communities that fall under our definition of biocrusts, in the process of highlighting their global distribution. Finally, we suggest the universal use of the Belnap, Büdel & Lange definition, with minor modifications: Biological soil crusts (biocrusts) result from an intimate association between soil particles and differing proportions of photoautotrophic (e.g. cyanobacteria , algae , lichens , bryophytes) and heterotrophic (e.g. bacteria , fungi , archaea) organisms , which live within , or immediately on top of , the uppermost millimetres of soil. Soil particles are aggregated through the presence and activity of these often extremotolerant biota that desiccate regularly , and the resultant living crust covers the surface of the ground as a coherent layer. With this detailed definition of biocrusts, illustrating their ecological functions and widespread distribution, we hope to stimulate interest in biocrust research and inform various stakeholders (e.g. land managers, land users) on their overall importance to ecosystem and Earth system functioning.

Biological Reviews

Rock mechanics observations pertinent to the rheology of the continental lithosphere and the localization of strain along shear zones

Emphasized in this paper are the deformation processes and rheologies of rocks at high temperatures and high effective pressures, conditions that are presumably appropriate to the lower crust and upper mantle in continental collision zones. Much recent progress has been made in understanding the flexure of the oceanic lithosphere using rock-mechanics-based yield criteria for the inelastic deformations at the top and base. At mid-plate depths, stresses are likely to be supported elastically because bending strains and elastic stresses are low. The collisional tectonic regime, however, is far more complex because very large permanent strains are sustained at mid-plate depths and this requires us to include the broad transition between brittle and ductile flow. Moreover, important changes in the ductile flow mechanisms occur at the intermediate temperatures found at mid-plate depths. Two specific contributions of laboratory rock rheology research are considered in this paper. First, the high-temperature steady-state flow mechanisms and rheology of mafic and ultramafic rocks are reviewed with special emphasis on olivine and crystalline rocks. Rock strength decreases very markedly with increases in temperature and it is the onset of flow by high temperature ductile mechanisms that defines the base of the lithosphere. The thickness of the continental lithosphere can therefore be defined by the depth to a particular isotherm Tc above which (at geologic strain rates) the high-temperature ductile strength falls below some arbitrary strength isobar (e.g., 100 MPa). For olivine Tc is about 700??-800??C but for other crustal silicates, Tc may be as low as 400??-600??C, suggesting that substantial decoupling may take place within thick continental crust and that strength may increase with depth at the Moho, as suggested by a number of workers on independent grounds. Put another way, the Moho is a rheological discontinuity. A second class of laboratory observations pertains to the general phenomenon of ductile faulting in which ductile strains are localized into shear zones. Ductile faults have been produced in experiments of five different rock types and is generally expressed as strain softening in constant-strain-rate tests or as an accelerating-creep-rate stage at constant differential stress. A number of physical mechanisms have been identified that may be responsible for ductile faulting, including the onset of dynamic recrystallization, phase changes, hydrothermal alteration and hydrolytic weakening. Microscopic evidence for these processes as well as larger-scale geological and geophysical observations suggest that ductile faulting in the middle to lower crust and upper mantle may greatly influence the distribution and magnitudes of differential stresses and the style of deformation in the overlying upper continental lithosphere.

Tectonophysics

Monitoring changes in the Platte River riparian corridor with serial LiDAR surveys

The Platte River in central Nebraska is a wide, sand-bedded river that provides habitat for migratory water birds along the North American flyway. The central Platte River functions as critical habitat for the endangered whooping crane (Grus americana) and also is an important habitat for the endangered least tern (Sterna antillarum) and the threatened piping plover (Charadrius melodus). Upstream water-resource development over the last century has decreased the water and sediment supplied to the central Platte River. This has resulted in vegetation encroachment and narrowing of Platte River channels. The National Academy of Sciences' National Research Council, in a recent review of these critical habitat designations, concluded that the current morphology of Platte River channels is limiting the recovery of the endangered and threatened avian species. Habitat-enhancement efforts along the Platte River currently (2006) are focused on the clearing of vegetation from in-channel and riparian areas, whereas future plans propose the release of water from upstream dams as a means to prevent vegetation from encroaching on the active river channel. For this reason, monitoring the physical response of the river channel to these management treatments is an important component of a proposed habitat recovery program. Understanding the effects of management strategies on Platte River riparian habitat also is a key objective of the U.S. Geological Survey's Platte River Priority Ecosystem Program (http://mcmcweb.er.usgs.gov/platte/). This fact sheet describes applications of LiDAR to monitor changes in the Platte River riparian corridor.

Fact Sheet

Human-polar bear interactions

Human-wildlife interactions (HWI) are driven fundamentally by overlapping space and resources. As competition intensifies, the likelihood of interaction and conflict increases. In turn, conflict may impede conservation efforts by lowering social tolerance of wildlife, especially when human-wildlife conflict (HWC) poses a threat to human safety and economic well-being. Thus, mitigating conflict is one of the most consequential components of a wildlife management program, particularly for large carnivores. However, unlike other large carnivores, the causative factors and conservation consequences of interactions between humans and polar bears ( Ursus maritimus ) are poorly understood. Historically, mitigation of human-polar bear conflict has been a low management priority with the exception of a few locations where conflict had been a chronic concern. In part, this was because of low human densities in most of the Arctic and sea ice act as a physical barrier regulating the frequency of human-polar bear interactions. However, as the Arctic has warmed, anthropogenic activities have increased, and polar bears have become more reliant on land. As a result, mitigating interaction and conflict between humans and polar bears has become a growing concern. In this chapter, we explore the nexus of polar bear and human behavior and environmental change in driving the nature and intensity of human-polar bear interaction and conflict. We first provide an overview of behaviors that contribute to the occurrence of interactions and conflicts. We then review historical and contemporary drivers of interaction and conflict and examine how climate-mediated changes to Arctic marine and terrestrial environments are likely to influence distribution and types of future incidents. We close by proposing a conceptual framework that conservationists and managers can use to mitigate the likelihood of future human-polar bear conflict in a rapidly changing Arctic.

Book chapter

Natural occurrence and significance of fluids indicating high pressure and temperature

Most natural minerals have formed from a fluid phase such as a silicate melt or a saline aqueous solution. Fluid inclusions are tiny volumes of such fluids that were trapped within the growing crystals. These inclusions can provide valuable but sometimes ambiguous data on the temperature, pressure, and composition of these fluids, many of which are not available from any other source. They also provide “visual autoclaves” in which it is possible to watch, through the microscope, the actual phase changes take place as the inclusions are heated. This paper reviews the methods of study and the results obtained, mainly on inclusions formed from highly concentrated solutions, at temperatures ≥500°C. Many such fluids have formed as a result of immiscibility with silicate melt in igneous or high-temperature metamorphic rocks. These include fluids consisting of CO 2 , H 2 O, or hydrosaline melts that were <50% H 2 O. From the fluid inclusion evidence it is clear that a boiling, very hot, very saline fluid was present during the formation of most of the porphyry copper deposits in the world. Similarly, from the inclusion evidence it is clear that early (common) pegmatites formed from essentially silicate melts and that the late, rare-element-bearing and chamber-type pegmatites formed from a hydrosaline melt or a more dilute water solution. The evidence on whether this change in composition from early to late solutions was generally continuous or involved immiscibility is not as clear.

Physics and Chemistry of the Earth

Navigating the possibilities and pitfalls of biocrust recovery in a changing climate

Biological soil crusts are complex communities composed of lichens, mosses, bacteria, and cyanobacteria that create a living skin on the soil surface across drylands worldwide. Although small in size, the vast area that biocrusts cover and the critical functions they provide make them a cornerstone of dryland health and resiliency. In addition to being important, biocrusts are exceptionally vulnerable to certain types of disturbance. Although they can withstand a wide range of temperatures and long periods without precipitation, biocrusts are highly sensitive to land-use change and are vulnerable to physical and compressional disturbance (i.e., trampling, vehicles, cattle, heavy machinery). In the face of these disturbances, a critical, long-standing question of interest to dryland ecologists is: Can biocrusts recover following disturbance without active intervention. If so, how long does it take? Early estimates of biocrust recovery suggested recovery can be incredibly slow (on the order of thousands of years), with more modern studies finding potential for faster recovery, especially with intervention. Multiple lines of evidence agree that recovery is context dependent, differing across climates, soils, and with the types of disturbance and biocrust. Additionally, active restoration of biocrusts is becoming more common as tractable strategies are developed for facilitating the establishment of biocrusts after disturbance. Here, we add to the body of knowledge about biocrust recovery following disturbances by reviewing recovery patterns, their connection to climate change, considerations for recovery in changing climates, and the role of restoration.

American Journal of Botany

Volcanological applications of unoccupied aircraft systems (UAS): Developments, strategies, and future challenges

Unoccupied aircraft systems (UAS) are developing into fundamental tools for tackling the grand challenges in volcanology; here, we review the systems used and their diverse applications. UAS can typically provide image and topographic data at two orders of magnitude better spatial resolution than space-based remote sensing, and close-range observations at temporal resolutions down to those of video frame rates. Responsive deployments facilitate dense time-series measurements, unique opportunities for geophysical surveys, sample collection from hostile environments such as volcanic plumes and crater lakes, and emergency deployment of ground-based sensors (and robots) into hazardous regions. UAS have already been used to support hazard management and decision-makers during eruptive crises. As technologies advance, increased system capabilities, autonomy and availability, supported by more diverse and lighter-weight sensors, will offer unparalleled potential for hazard monitoring. UAS are expected to provide opportunities for pivotal advances in our understanding of complex physical and chemical volcanic processes.

Volcanica

Monitoring plans for Louisiana’s system-wide assessment and monitoring program (SWAMP). Version IV

The System-Wide Assessment and Monitoring Program (SWAMP) has been envisioned as a long-term monitoring program to ensure a comprehensive network of coastal data collection activities is in place to support the development, implementation, and adaptive management of the coastal protection and restoration program within coastal Louisiana. The Coastwide Reference Monitoring System (CRMS) and Barrier Island Comprehensive Monitoring (BICM) programs have been implemented under SWAMP, while other aspects of system dynamics, including offshore and inland water-body boundary conditions, nontidal freshwater habitats, riverine conditions, risk status, and protection performance, are not presently the subject of CPRA-coordinated (Coastal Protection and Restoration Authority) monitoring. In order to implement these additional aspects of SWAMP, CPRA partnered with The Water Institute of the Gulf and others to develop 1) a programmatic monitoring plan for evaluating the effectiveness of the coastal protection and restoration program on a coastwide scale, and 2) basinwide monitoring plans that will incorporate the elements of the programmatic plan with specific data collection activities designed to capture effects within the basin. Monitoring plans were developed for Barataria Basin, Pontchartrain Region (includes Breton Sound, Pontchartrain and Mississippi River Delta Basins), and the western basins (Calcasieu-Sabine, Mermentau, Teche-Vermilion, Atchafalaya, and Terrebonne) for both the natural and human systems using a process to identify the monitoring variables, objectives, and sampling design. The monitoring variables and objectives identified fall under the general categories of weather and climate, biotic integrity, water quality, hydrology, physical terrain, population and demographics, housing and community characteristics, economy and employment, ecosystem dependency, residential properties protection, and critical infrastructure and essential services protection. A rigorous statistical analysis, examination of modeling needs, and thorough reviews of previous planning and monitoring efforts were conducted to develop the sampling designs for the natural and human system monitoring plans. The plan relies heavily on the use of existing data, thus, coordination with other agencies (e.g., LDEQ , LDWF) and CPRA’s existing monitoring programs (e.g., BICM, CRMS) is critical to the plan’s success. Implementation of the plans will require development of quality control and quality assurance protocols, specific standardized operating procedures for each of the data collection efforts, a data management plan, and a reporting framework to contribute to decision making and reducing uncertainty in management actions.

Louisiana

Insights on the 2009 South Pacific tsunami in Samoa and Tonga from field surveys and numerical simulations

An M w ≈ 8.1 earthquake south of the Samoan Islands on 29 September 2009 generated a tsunami that killed 189 people. From 4 to 11 October, an International Tsunami Survey Team surveyed the seven major islands of the Samoan archipelago. The team measured locally focused runup heights of 17 m at Poloa and inundation of more than 500 m at Pago Pago. A follow-up expedition from 23 to 28 November surveying the three main islands of Tonga's northernmost Niua group revealed surprising 22 m runup and 1 km inundation. We analyze the extreme tsunami runup and complex impact distribution based on physical and societal observations combined with numerical modeling. That an outer rise/outer trench slope (OR/OTS) event is responsible for a tsunami disaster in the Pacific calls for care in identifying and defining tsunami hazards. Evacuation exercises conducted in Samoa in the preceding year may have limited the human toll; however, cars were identified as potential death traps during tsunami evacuations. This event highlights the extreme hazards from near source tsunamis when the earthquake's shaking constitutes the de facto warning, and further underscores the importance of community based education and awareness programs as essential in saving lives.

Earth-Science Reviews

Chemistry and palynology of carbon seams and associated rocks from the Witwatersrand goldfields, South Africa

Carbon seams in the Witwatersrand System of South Africa host some of the richest gold concentrations in the world. A study of the microscopic characteristics in thin sections and acid residues, and of the chemical and physical nature of the carbon-bearing phases, was undertaken to gain some understanding of the biological precursors and thermal changes that have occurred since the seams were buried. The HCl HF acid-resistant organic tissues in this Early Proterozoic coal are filamentous and spherical, which are typical morphologies for microorganisms. The tissues are carbonized black as would be expected for metamorphic rocks, so usual palynological techniques were of limited use. Therefore, the chemical and physical nature of the organic remains was studied by H C "> HC ratios, X-ray diffraction (XRD), 13 C nuclear magnetic resonance (NMR), reductive chemistry, crosspolarization/magic angle spinning NMR (CP/MAS), and electron spin resonance (ESR). The H C "> HC ratios of the samples examined are similar to those of semi-anthracite and petroleum cokes from delayed cokers. XRD shows graphite is not present and that the gold is in elemental form, not chemically bound or intercalated between carbon planes. NMR shows that both aromatic and paraffinic carbons are present. Integration of the carbon NMR spectra suggests that 80% of the carbon is sp 2 -hybridized and 20% is sp 3 -hybridized. Reductive chemistry shows that the benzenoid entities are larger than common polynuclear aromatic hydrocarbons such as perylene and decacyclene. Dipolar dephasing CP/MAS NMR suggests the presence of two types of paraffinic carbons, a rigid methylene group and a rotating methyl group. The narrowing of the ESR linewidth between room temperature and 300°C shows that the materials examined have not previously been subjected to temperatures as high as 300°C.

Witwatersrand goldfields

Connectivity of streams and wetlands to downstream waters: An integrated systems framework

Interest in connectivity has increased in the aquatic sciences, partly because of its relevance to the Clean Water Act. This paper has two objectives: (1) provide a framework to understand hydrological, chemical, and biological connectivity, focusing on how headwater streams and wetlands connect to and contribute to rivers; and (2) briefly review methods to quantify hydrological and chemical connectivity. Streams and wetlands affect river structure and function by altering material and biological fluxes to the river; this depends on two factors: (1) functions within streams and wetlands that affect material fluxes; and (2) connectivity (or isolation) from streams and wetlands to rivers that allows (or prevents) material transport between systems. Connectivity can be described in terms of frequency, magnitude, duration, timing, and rate of change. It results from physical characteristics of a system, e.g., climate, soils, geology, topography, and the spatial distribution of aquatic components. Biological connectivity is also affected by traits and behavior of the biota. Connectivity can be altered by human impacts, often in complex ways. Because of variability in these factors, connectivity is not constant but varies over time and space. Connectivity can be quantified with field‐based methods, modeling, and remote sensing. Further studies using these methods are needed to classify and quantify connectivity of aquatic ecosystems and to understand how impacts affect connectivity.

Journal of the American Water Resources Associatio

Synchrotron x-ray spectroscopy of EuHN O3 aqueous solutions at high temperatures and pressures and Nb-bearing silicate melt phases coexisting with hydrothermal fluids using a modified hydrothermal diamond anvil cell and rail assembly

A modified hydrothermal diamond anvil cell (HDAC) rail assembly has been constructed for making synchrotron x-ray absorption spectroscopy, x-ray fluorescence, and x-ray mapping measurements on fluids or solid phases in contact with hydrothermal fluids up to ???900??C and 700 MPa. The diamond anvils of the HDAC are modified by laser milling grooves or holes, for the reduction of attenuation of incident and fluorescent x rays and sample cavities. The modified HDAC rail assembly has flexibility in design for measurement of light elements at low concentrations or heavy elements at trace levels in the sample and the capability to probe minute individual phases of a multiphase fluid-based system using focused x-ray microbeam. The supporting rail allows for uniform translation of the HDAC, rotation and tilt stages, and a focusing mirror, which is used to illuminate the sample for visual observation using a microscope, relative to the direction of the incident x-ray beam. A structure study of Eu(III) aqua ion behavior in high-temperature aqueous solutions and a study of Nb partitioning and coordination in a silicate melt in contact with a hydrothermal fluid are described as applications utilizing the modified HDAC rail assembly. ?? 2007 American Institute of Physics.

Review of Scientific Instruments

Potential effects of climate change on aquatic ecosystems of the Great Plains of North America

The Great Plains landscape is less topographically complex than most other regions within North America, but diverse aquatic ecosystems, such as playas, pothole lakes, ox-bow lakes, springs, groundwater aquifers, intermittent and ephemeral streams, as well as large rivers and wetlands, are highly dynamic and responsive to extreme climatic fluctuations. We review the evidence for climatic change that demonstrates the historical importance of extremes in north-south differences in summer temperatures and east-west differences in aridity across four large subregions. These physical driving forces alter density stratification, deoxygenation, decomposition and salinity. Biotic community composition and associated ecosystem processes of productivity and nutrient cycling respond rapidly to these climatically driven dynamics. Ecosystem processes also respond to cultural effects such as dams and diversions of water for irrigation, waste dilution and urban demands for drinking water and industrial uses. Distinguishing climatic from cultural effects in future models of aquatic ecosystem functioning will require more refinement in both climatic and economic forecasting. There is a need, for example, to predict how long-term climatic forecasts (based on both ENSO and global warming simulations) relate to the permanence and productivity of shallow water ecosystems. Aquatic ecologists, hydrologists, climatologists and geographers have much to discuss regarding the synthesis of available data and the design of future interdisciplinary research.

Hydrological Processes

Crotalus oreganus lutosus (Great Basin Rattlesnake). Defensive behavior/head hiding and tongue display

A variety of snake species employ head hiding as defensive behavior (Greene 1973. J. Herpetol. 7:143–161), but such behavior seems to be rarely observed in rattlesnakes. A recent report (Medica 2009. Herpetol. Rev. 40:95–97) presented observations on Crotalus scutulatus scutulatus and cited cases of similar behavior involving C. atrox , C. ruber , and C. viridis viridis . Here we report an encounter on 28 May 2016 with a C. oreganus lutosus (total length ca. 900 mm) observed 16 km S of Fallon, Churchill County, Nevada, USA. At 0925 h this snake was spotted by AKJ near the edge of the pavement on U.S. Hwy. 95. When approached, the snake presented typical active defensive behavior, with the rattle elevated (although not rattling), striking occasionally, and frequently flicking its conspicuous lavender and black tongue. As AKJ continued to take pictures the snake coiled more tightly (Fig. 1A), maintaining its rattle concealed and finally hiding its head beneath its coils (Fig. 1B). After photographing this pose AKJ made his first physical contact with the snake by scooping it up with a small shovel and placing it off the road. At this point the snake recovered its feisty attitude and would not retreat despite attempts to move it further away from the road. The snake did not rattle during the entire encounter (which lasted less than 5 min). Head hiding as a “last resort” in response to a persistent unavoidable threat may be more widespread within the family Crotalidae than previously documented.

Nevada

Rivers of the Lower Mississippi Basin

Discussed in this chapter are seven significant tributaries of the Lower Mississippi River and its major distributary. As a group, these eight rivers and their basins encompass substantial variation in physical form, hydrology, biota, ecology, and human impacts. The Current River, Ouachita River, and Saline River, flow to the Mississippi out of the U.S. Interior Highlands. The Cache River basin, centered in Arkansas, contains a vast expanse of bottomland hardwood forest and is famous for wintering waterfowl. The Hatchie River, flowing west out of Tennessee, is the longest free-flowing tributary of the Lower Mississippi River and famous for its rich diversity of mussels and fishes. The Wolf River of Tennessee supports a magnificent bald cypress-tupelo swamp and is notable as a protected urban river that flows through Memphis. The Big Sunflower River begins and ends in the alluvial floodplain of the Mississippi River and flows through a basin of intense agriculture and historical human conflict. The Atchafalaya River, the primary distributary of the Mississippi River, supports the nation's largest expanse of bottomland hardwood forest and swamp wetlands. In this chapter, we review the physiography, geomorphology, hydrology, water chemistry, land use, biological diversity, ecological processes, human impacts, and areas of need for research and management of each of these eight rivers and their basins.

Lower Mississippi River basin