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BERM: A Belowground Ecosystem Resiliency Model for estimating Spartina alterniflora belowground biomass

Summary Spatiotemporal patterns of Spartina alterniflora belowground biomass (BGB) are important for evaluating salt marsh resiliency. To solve this, we created the BERM (Belowground Ecosystem Resiliency Model), which estimates monthly BGB (30-m spatial resolution) from freely available data such as Landsat-8 and Daymet climate summaries. Our modeling framework relied on extreme gradient boosting, and used field observations from four Georgia salt marshes as ground-truth data. Model predictors included estimated tidal inundation, elevation, leaf area index, foliar nitrogen, chlorophyll, surface temperature, phenology, and climate data. The final model included 33 variables, and the most important variables were elevation, vapor pressure from the previous four months, Normalized Difference Vegetation Index (NDVI) from the previous five months, and inundation. Root mean squared error for BGB from testing data was 313 g m −2 (11% of the field data range), explained variance ( R 2 ) was 0.62–0.77. Testing data results were unbiased across BGB values and were positively correlated with ground-truth data across all sites and years ( r = 0.56–0.82 and 0.45–0.95, respectively). BERM can estimate BGB within Spartina alterniflora salt marshes where environmental parameters are within the training data range, and can be readily extended through a reproducible workflow. This provides a powerful approach for evaluating spatiotemporal BGB and associated ecosystem function.

New Phytologist

The consequences of climate change for dryland biogeochemistry

Drylands, which cover more than 40% of Earth’s terrestrial surface, are dominant drivers of global biogeochemical cycling and home to more than one third of the human population. Climate projections predict warming, drought frequency and severity, and evaporative demand will increase in drylands at faster rates than global means. Due to extreme temperatures and high biological dependency on limited water availability, drylands are predicted to be exceptionally sensitive to climate change and, indeed, significant climate impacts are already being observed. Yet our understanding and ability to forecast climate change effects on dryland biogeochemistry and ecosystem functions lag behind many mesic systems. To improve our capacity to forecast ecosystem change, we propose focusing on the controls and consequences of two key characteristics affecting dryland biogeochemistry: i) high spatial and temporal heterogeneity in environmental conditions and ii) generalized resource scarcity. In addition to climate change, drylands are experiencing accelerating land use change. Building our understanding of dryland biogeochemistry in both intact and disturbed systems will better equip us to address the interacting effects of climate change and landscape degradation. Responding to these challenges will require a diverse, globally distributed, and interdisciplinary community of dryland experts united towards better understanding these vast and important ecosystems.

New Phytologist Foundation

Bet-hedging and best-bet strategies shape seed dormancy

Seed dormancy (i.e. delayed germination even when conditions are favourable) is a key plant characteristic that occurs among many species worldwide. But, what selective pressures led to seed dormancy? A recent study provides a major analysis of the factors driving this trait at the global scale (Zhang et al ., 2022 ). Using c. 12 000 species and 10 million records across the globe, they conclude that dormancy is a strategy for plants living under ‘seasonal/unpredictable’ environments; and suggest that bet-hedging could be the major mechanism behind the pattern. To reach their conclusions the authors relate the proportion of species with dormant seeds in a grid-cell global map against climate variables related to annual precipitation, temperature and seasonality. Then they showed that the most significant variables were those related to climate seasonality that they equate with unpredictable climates (although seasonal climates usually are highly predictable in their seasonal cycles).

New Phytologist

Thermography captures the differential sensitivity of dryland functional types to changes in rainfall event timing and magnitude

Drylands of the southwestern United States are rapidly warming, and rainfall is becoming less frequent and more intense, with major yet poorly understood implications for ecosystem structure and function. Thermography-based estimates of plant temperature can be integrated with air temperature to infer changes in plant physiology and response to climate change. However, very few studies have evaluated plant temperature dynamics at high spatiotemporal resolution in rainfall pulse-driven dryland ecosystems. We address this gap by incorporating high-frequency thermal imaging into a field-based precipitation manipulation experiment in a semi-arid grassland to investigate the impacts of rainfall temporal repackaging. All other factors held constant, we found that fewer/larger precipitation events led to cooler plant temperatures (1.4°C) compared to that of many/smaller precipitation events. Perennials, in particular, were 2.5°C cooler than annuals under the fewest/largest treatment. We show these patterns were driven by: increased and consistent soil moisture availability in the deeper soil layers in the fewest/largest treatment; and deeper roots of perennials providing access to deeper plant available water. Our findings highlight the potential for high spatiotemporal resolution thermography to quantify the differential sensitivity of plant functional groups to soil water availability. Detecting these sensitivities is vital to understanding the ecohydrological implications of hydroclimate change.

New Phytologist

Linking water use efficiency with water use strategy from leaves to communities

Limitations and utility of three measures of water use characteristics were evaluated: water use efficiency (WUE), intrinsic WUE and marginal water cost of carbon gain ( aE/aA ) estimated, respectively, as ratios of assimilation ( A ) to transpiration ( E ), of A to stomatal conductance ( g s ) and of sensitivities of E and A with variation in g s . Only the measure aE/aA estimates water use strategy in a way that integrates carbon gain relative to water use under varying environmental conditions across scales from leaves to communities. This insight provides updated and simplified ways of estimating aE/aA and adds depth to understanding ways that plants balance water expenditure against carbon gain, uniquely providing a mechanistic means of predicting water use characteristics under changing environmental scenarios.

New Phytologist

Tropical forests and global change: Biogeochemical responses and opportunities for cross-site comparisons, an organized INSPIRE session at the 108th Annual Meeting, Ecological Society of America, Portland, Oregon, USA, August 2023

Tropical forests play a critical role in the global carbon (C) cycle. These ecosystems maintain the highest rates of net primary production (NPP) on Earth (Hengl et al ., 2017 ), contain c . 30% of terrestrial C stocks (Jobbagy & Jackson, 2000 ), and have some of the largest stores of fine-root biomass globally (Jackson et al ., 1996 ), as well as higher fine-root production and turnover rates compared with other biomes (Cusack et al ., 2021 ). Tropical forest responses to projected warming, altered rainfall regimes, and elevated CO 2 concentrations (IPCC, 2021 ) are likely to be different from other ecosystems because of their unique characteristics (Box 1 ), making targeted research and model development important for understanding tropical forest–climate feedbacks. There is now a critical mass of long-term global change field experiments and modeling efforts in tropical forests, yet thus far there has been little synthesis, cross-site comparison, or multi-site standardized experimentation among tropical forests to help us understand how these biomes are changing. An organized INSPIRE session at the 108 th Annual Meeting of the Ecological Society of America set out to tackle just this. Speakers covered large-scale tropical forest field experiments and modeling efforts, with an emphasis on changes in ecosystem biogeochemistry under warming, drying, elevated atmospheric CO 2 , and changing nutrient status. In this Meeting report, we provide an overview of the large-scale global change experiments presented and highlight the main objectives and opportunities for tropical forest research that emerged, including cross-site comparisons and integration with ecosystem-scale models (Fig. 1 ).

New Phytologist

Carbon isotope trends across a century of herbarium specimens suggest CO2 fertilization of C4 grasses.

Increasing atmospheric CO 2 is changing the dynamics of tropical savanna vegetation. C 3 trees and grasses are known to experience CO 2 fertilization, whereas responses to CO 2 by C 4 grasses are more ambiguous. Here, we sample stable carbon isotope trends in herbarium collections of South African C 4 and C 3 grasses to reconstruct 13 C discrimination. We found that C 3 grasses showed no trends in 13 C discrimination over the past century but that C 4 grasses increased their 13 C discrimination through time, especially since 1950. These changes were most strongly linked to changes in atmospheric CO 2 rather than to trends in rainfall climatology or temperature. Combined with previously published evidence that grass biomass has increased in C 4 -dominated savannas, these trends suggest that increasing water-use efficiency due to CO 2 fertilization may be changing C 4 plant–water relations. CO 2 fertilization of C 4 grasses may thus be a neglected pathway for anthropogenic global change in tropical savanna ecosystems.

New Phytologist

C4 photosynthesis, trait spectra, and the fast-efficient phenotype

It has been 60 years since the discovery of C 4 photosynthesis, an event that rewrote our understanding of plant adaptation, ecosystem responses to global change, and global food security. Despite six decades of research, one aspect of C 4 photosynthesis that remains poorly understood is how the pathway fits into the broader context of adaptive trait spectra, which form our modern view of functional trait ecology. The C 4 CO 2 -concentrating mechanism supports a general C 4 plant phenotype capable of fast growth and high resource-use efficiencies. The fast-efficient C 4 phenotype has the potential to operate at high productivity rates, while allowing for less biomass allocation to root production and nutrient acquisition, thereby providing opportunities for the evolution of novel trait covariances and the exploitation of new ecological niches. We propose the placement of the C 4 fast-efficient phenotype near the acquisitive pole of the world-wide leaf economic spectrum, but with a pathway-specific span of trait space, wherein selection shapes both acquisitive and conservative adaptive strategies. A trait-based perspective of C 4 photosynthesis will open new paths to crop improvement, global biogeochemical modeling, the management of invasive species, and the restoration of disturbed ecosystems, particularly in grasslands.

New Phytologist

Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions

Are non-native plants abundant because they are non-native, and have advantages over native plants, or because they possess ‘fast’ resource strategies, and have advantages in disturbed environments? This question is central to invasion biology but remains unanswered. We quantified the relative importance of resource strategy and biogeographic origin in 69 441 plots across the conterminous United States containing 11 280 plant species. Non-native species had faster economic traits than native species in most plant communities (77%, 86% and 82% of plots for leaf nitrogen concentration, specific leaf area, and leaf dry matter content). Non-native species also had distinct patterns of abundance, but these were not explained by their fast traits. Compared with functionally similar native species, non-native species were (1) more abundant in plains and deserts, indicating the importance of biogeographic origin, and less abundant in forested ecoregions, (2) were more abundant where co-occurring species had fast traits, for example due to disturbance, and (3) showed weaker signals of local environmental filtering. These results clarify the nature of plant invasion: Although non-native plants have consistently fast economic traits, other novel characteristics and processes likely explain their abundance and, therefore, impacts.

conterminous United States

Cryptic CAM photosynthesis in Joshua tree (Yucca brevifolia, Y. jaegeriana)

Joshua trees are long-lived perennial monocots native to the Mojave Desert in North America. Composed of two species, Yucca brevifolia and Y. jaegeriana (Asparagaceae), Joshua trees are imperiled by climate change, with decreases in suitable habitat predicted under future climate change scenarios. Relatively little is understood about the ecophysiology of Joshua trees across their range, including the extent to which populations are locally adapted or phenotypically plastic to environmental stress. Plants in our common gardens showed evidence of Crassulacean acid metabolism photosynthesis (CAM) in a pilot experiment, despite no prior report of this photosynthetic pathway in these species. We further studied the variation and strength of CAM within a single common garden, measuring seedlings representing populations across the range of the two species. A combination of physiology and transcriptomic data showed low levels of CAM that varied across populations but were unrelated to home environmental conditions. Gene expression confirmed CAM activity and further suggested differences in carbon and nitrogen metabolism between Y. brevifolia and Y. jaegeriana. Together the results suggest greater physiological diversity between these species than initially expected, particularly at the seedling stage, with implications for future survival of Joshua trees under a warming climate.

New Phytologist

Experimental warming alters free-living nitrogen fixation in a humid tropical forest

Microbial nitrogen (N) fixation accounts for c. 97% of natural N inputs to terrestrial ecosystems. These microbes can be free-living in the soil and leaf litter (asymbiotic) or in symbiosis with plants. Warming is expected to increase N-fixation rates because warmer temperatures favor the growth and activity of N-fixing microbes. We investigated the effects of warming on asymbiotic components of N fixation at a field warming experiment in Puerto Rico. We analyzed the function and composition of bacterial communities from surface soil and leaf litter samples. Warming significantly increased asymbiotic N-fixation rates in soil by 55% (to 0.002 kg ha −1 yr −1 ) and by 525% in leaf litter (to 14.518 kg ha −1 yr −1 ) . This increase in N fixation was associated with changes in the N-fixing bacterial community composition and soil nutrients. Our findings suggest that warming increases the natural N inputs from the atmosphere into this tropical forest due to changes in microbial function and composition, especially in the leaf litter. Given the importance of leaf litter in nutrient cycling, future research should investigate other aspects of N cycles in the leaf litter under warming conditions.

Luquillo Experimental Forest, northeastern Puerto