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Salamander chytrid fungus ( Batrachochytrium salamandrivorans ) in the United States—Developing research, monitoring, and management strategies

The recently (2013) identified pathogenic chytrid fungus, Batrachochytrium salamandrivoran s ( Bsal ), poses a severe threat to the distribution and abundance of salamanders within the United States and Europe. Development of a response strategy for the potential, and likely, invasion of Bsal into the United States is crucial to protect global salamander biodiversity. A formal working group, led by Amphibian Research and Monitoring Initiative (ARMI) scientists from the U.S. Geological Survey (USGS) Patuxent Wildlife Research Center, Fort Collins Science Center, and Forest and Rangeland Ecosystem Science Center, was held at the USGS Powell Center for Analysis and Synthesis in Fort Collins, Colorado, United States from June 23 to June 25, 2015, to identify crucial Bsal research and monitoring needs that could inform conservation and management strategies for salamanders in the United States. Key findings of the workshop included the following: (1) the introduction of Bsal into the United States is highly probable, if not inevitable, thus requiring development of immediate short-term and long-term intervention strategies to prevent Bsal establishment and biodiversity decline; (2) management actions targeted towards pathogen containment may be ineffective in reducing the long-term spread of Bsal throughout the United States; and (3) early detection of Bsal through surveillance at key amphibian import locations, among high-risk wild populations, and through analysis of archived samples is necessary for developing management responses. Top research priorities during the preinvasion stage included the following: (1) deployment of qualified diagnostic methods for Bsal and establishment of standardized laboratory practices, (2) assessment of susceptibility for amphibian hosts (including anurans), and (3) development and evaluation of short- and long-term pathogen intervention and management strategies. Several outcomes were achieved during the workshop, including development of an organizational structure with working groups for a Bsal Task Force, creation of an initial influence diagram to aid in identifying effective management actions in the face of uncertainty, and production of a list of potential management actions and key research uncertainties. Additional products under development include a Bsal Strategic Action plan, an emergency response plan, a monitoring and surveillance program, a standardized diagnostic approach, decision models for natural resource agencies, and a reporting database for salamander mortalities. This workshop was the first international meeting to address the threat of Bsal to salamander populations in the United States, with more than 30 participants from U.S. conservation and resource management agencies (U.S. Fish and Wildlife Service, U.S. Forest Service, U.S. Department of Defense, U.S. National Park Service, and Association of Fish and Wildlife Agencies) and academic research institutions in Australia, the Netherlands, Switzerland, the United Kingdom, and the United States.

Open-File Report

Status of whitebarkpine in the Greater Yellowstone Ecosystem: A step-trend analysis comparing 2004-2007 to 2008-2011

Whitebark pine (Pinus albicaulis) is a foundation and keystone species in upper subalpine environments of the northern Rocky Mountains that strongly influences the biodiversity and productivity of high-elevation ecosystems (Tomback et al. 2001, Ellison et al. 2005). Throughout its historic range, whitebark pine has decreased significantly as a major component of high-elevation forests. As a result, it is critical to understand the challenges to whitebark pine—not only at the tree and stand level, but also as these factors influence the distribution of whitebark pine across the Greater Yellowstone Ecosystem (GYE). In 2003, the National Park Service (NPS) Greater Yellowstone Inventory & Monitoring Network identified whitebark pine as one of twelve significant natural resource indicators or vital signs to monitor (Jean et al. 2005, Fancy et al. 2009) and initiated a long-term, collaborative monitoring program. Partners in this effort include the U.S. Geological Survey, U.S. Forest Service, and Montana State University with representatives from each comprising the Greater Yellowstone Whitebark Pine Monitoring Working Group. The objectives of the monitoring program are to assess trends in (1) the proportion of live, whitebark pine trees (>1.4-m tall) infected with white pine blister rust (blister rust); (2) to document blister rust infection severity by the occurrence and location of persisting and new infections; (3) to determine mortality of whitebark pine trees and describe potential factors contributing to the death of trees; and (4) to assess the multiple components of the recruitment of understory whitebark pine into the reproductive population. In this report we summarize the past eight years (2004-2011) of whitebark pine status and trend monitoring in the GYE. Our study area encompasses six national forests (NF), two national parks (NP), as well as state and private lands in portions of Wyoming, Montana, and Idaho; this area is collectively described as the GYE here and in other studies. The sampling design is a probabilistic, twostage cluster design with stands of whitebark pine as the primary units and 10x50 m belt transects as the secondary units. Primary sampling units (stands) were selected randomly from a sample frame of approximately 10,770 mapped pure and mixed whitebark pine stands ≥2.0 hectares in the GYE (Dixon 1997, Landenburger 2012). From 2004 through 2007 (monitoring transect establishment or initial time-step), we established 176 permanent belt transects (secondary sampling units=176) in 150 whitebark pine stands and permanently marked approximately 4,740 individual trees >1.4 m tall to monitor long-term changes in blister rust infection and survival rates. Between 2008 and 2011 (revisit time-step), these same 176 transects were surveyed and again all previously tagged trees were observed for changes in blister rust infection and survival status. Objective 1. Using a combined ratio estimator, we estimated the proportion of live trees infected in the GYE in the initial time-step (2004-2007) to be 0.22 (0.031 SE). Following the completion of all surveys in the revisit time-step (2008-2011), we estimated the proportion of live trees infected with white pine blister rust as 0.23 (0.028 SE; Table 2). We detected no significant change in the proportion of trees infected in the GYE between the two time-steps. Objective 2. We documented blister rust canker locations as occurring in the canopy or bole. We compared changes in canker position between the initial time-step (2004-2007) and the revisit time-step (2008-2011) in order to assess changes in infection severity. This analysis included the 3,795 trees tagged during the initial time-step that were located and documented as alive at the end of the revisit time-step. At the end of the revisit time-step, we found 1,217 trees infected with blister rust. This includes the 287 newly tagged trees in the revisit time step of which 14 had documented infections. Of these 1,217 trees, 780 trees were infected with blister rust in both time steps. Trees with only canopy cankers made up approximately 43% (519 trees) of the total number of trees infected with blister rust at the end of the revisit time-step, while trees with only bole cankers comprised 20% (252 trees), and those with both canopy and bole cankers included 37% (446 trees) of the infected sample. A bole infection is considered to be more consequential than a canopy canker, as it compromises not only the overall longevity of the tree, but its functional capacity for reproductive output as well (Kendall and Arno 1990, Campbell and Antos 2000, McDonald and Hoff 2001, Schwandt and Kegley 2004). In addition to infection location, we also documented infection transition between the canopy and bole. Of the 780 live trees that were infected with blister rust in both time-steps, approximately 31% (242) maintained canopy cankers and 36% (281) retained bole infections at the end of the revisit time-step. Infection transition from canopy to bole occurred in 30% (234) of the revisit time-step trees while 3% (23) transitioned from bole to canopy infections during this period. Objective 3. To determine whitebark pine mortality, we resurveyed all belt transects to reassess the life status of permanently tagged trees >1.4 m tall. We compared the total number of live tagged trees recorded during monitoring transect establishment to the total number of resurveyed dead tagged trees recorded during the revisit time-step and identified all potential mortality-influencing conditions (blister rust, mountain pine beetle, fire and other). By the end of the revisit time-step, we observed a total of 975 dead tagged whitebark pine trees; using a ratio estimator, this represents a loss of approximately 20% (SE=4.35%) of the original live tagged tree population (GYWPMWG 2012). Objective 4. To investigate the proportion of live, reproducing tagged trees, we divided the total number of positively identified cone-bearing trees by the total number of live trees in the tagged tree sample at the end of the revisit time-step. To approximate the average density of recruitment trees per stand, trees ≤1.4 m tall were summed by stand (within the 500 m² transect area) and divided by the total number of stands. Reproducing trees made up approximately 24% (996 trees) of the total live tagged population at the end of the revisit time-step. Differentiating between whitebark pine and limber pine seedlings or saplings is problematic given the absence of cones or cone scars. Therefore, understory summaries as presented in this report may include individuals of both species when they are sympatric in a stand. The average density of small trees ≤1.4 m tall was 53 understory trees per 500 m². Raw counts of these understory individuals ranged from 0-635 small trees per belt transect. In addition, a total of 287 trees were added to the tagged tree population by the end of 2011. These newly tagged trees were individuals that upon subsequent revisits had reached a height of >1.4 m tall and subsequently added to the sample. Throughout the past decade in the GYE, monitoring has helped document shifts in whitebark pine forests; whitebark pine stands have been impacted by insect, pathogen, wildland fire, and other disturbance events. Blister rust infection is ubiquitous throughout the ecosystem and infection proportions are variable across the region. And while we have documented mortality of whitebark pine, we have also recorded considerable recruitment. We provide this first step-trend report as a quantifiable baseline for understanding the state of whitebark pine in the GYE. Many aspects of whitebark pine health are highly variable across the range of its distribution in the GYE. Through sustained implementation of the monitoring program, we will continue efforts to document and quantify whitebark pine forest dynamics as they arise under periodic upsurges in insect, pathogen, fire episodes, and climatic events in the GYE. Since its inception, this monitoring program perseveres as one of the only sustained longterm efforts conducted in the GYE with a singular purpose to track the health and status of this prominent keystone species.

Natural Resource Technical Report

Guidelines for long-term monitoring protocols

Monitoring protocols are detailed study plans that explain how data are to be collected, managed, analyzed, and reported, and are a key component of quality assurance for natural resource monitoring programs. Protocols are necessary to ensure that changes detected by monitoring actually are occurring in nature and not simply a result of measurements taken by different people or in slightly different ways. We developed and present here guidelines for the recommended content and format of monitoring protocols. The National Park Service and United States Geological Survey have adopted these guidelines to assist scientists developing protocols for more than 270 national park units.

Wildlife Society Bulletin

Assessment of microbiological contamination of the Jacks Fork within the Ozark National Scenic Riverways, Missouri—phase I

The Ozark National Scenic Riverways (ONSR), the Nation's first scenic riverway, was created by an Act of Congress (Public Law 88-492) on August 24, 1964, for "the purpose of conserving and interpreting unique scenic and other natural values and objects of historic interest, including preservation of parts of the Current River and the Jacks Fork River in Missouri as free-flowing streams, preservation of springs and caves, management of wildlife, and provisions for use and enjoyment of the outdoor recreation resources thereof by the people of the United States" (National Park Service, 1981). The primary natural resources protected by the park are 134 miles of the Current and Jacks Fork Rivers. About 1.5 million people visit the ONSR annually to take advantage of excellent recreational opportunities, including canoeing, johnboating, swimming, fishing, tubing, camping, hiking, caving, horseback riding, and hunting.

Fact Sheet

Mapping vegetation communities in Ozark National Scenic Riverways: final technical report to the National Park Service

Vegetation communities were mapped at two levels in Ozark National Scenic Riverways (ONSR) usign a hybrid combination of statistical methods and photointerpretation. The primary map includes 49 cover classes, including 24 cleasses that relate to vegetation associations currenly described by the United States National Vegetation Classification Standard (USNVC: The Nature Conservancy, 1994a). The remaining types include cultural features, ruderal communities on abandoned agricultural lands, and non-vegetated classes. Overall map classification accuarcy is 63 percent. The secondary mapping level aggregates communities with similar appearance and ecologically related associations into Community Types. The resultant 33-class Community Type map has an overall classification accuracy of 77 percent and identified groups of communities based on resource management goals within the park. Important additional products include 1) a general probability map for all vegetation associations, which can be used to assess final classification certainty, and 2) individual probability maps for each association, which can be used to identify areas that have a high likelihood of supporting a given type, beyond where that type was identified in the final map products. Other secondary map products include data layers derived from primary color-infrared imagery, secondary imagery data and digital elevation models. A field key and photo guide to associations and complete community descriptions were produced, along with a photo guide of fuel conditions. Wildland fuels data were used to generate a fuels map based upon Anderson's fuels models (1982).

Missouri

Vegetation map for the Seboeis Unit of Katahdin Woods and Waters National Monument

The Katahdin Woods and Waters National Monument, located in the forests of central Maine, is a newly (2016) established unit for the National Park Service. To better understand the condition of lands within the monument and inform management planning, Katahdin Woods and Waters National Monument resource managers wanted better information of the vegetation present within the monument. To meet this need, scientists at the U.S. Geological Survey Upper Midwest Environmental Sciences Center worked with ecologists at the Maine Natural Areas Program to catalog and map the vegetation of the Seboeis Unit of the monument. This report details this process, provides results of the survey and mapping efforts, presents results in the form of a vegetation map for the Seboeis Unit, and provides vegetation descriptions and a dichotomous key for the entire Katahdin Woods and Waters National Monument.

Maine

Estimating White-tailed Deer abundance at Gettysburg National Military Park and Eisenhower National Historic Site

The mission at Gettysburg National Military Park and Eisenhower National Historic Site (GNMP-ENHS) is to preserve the historic character of the parks to enable current and future generations to understand and interpret the events that took place at each park. Management objectives include maintaining the landscape as it existed during the historic 1863 Civil War battle (e.g., dense understory in woodlots) in GNMP and as it existed during Eisenhower’s occupancy (e.g., patchwork of cropfields) in ENHS. Browsing by white-tailed deer (Odocoileus virginianus) diminished regeneration of native trees in woodlots and prevented crops from reaching maturity. Thus, to increase regeneration in woodlots and reduce crop damage, the National Park Service (NPS) began culling deer in 1995 to reach a density goal of 10 deer/km 2 of forest. However, park managers were interested in an accurate population estimate to determine if their management goal has been met and possible methods to monitor future abundance.

Pennsylvania

Managers' summary - Ecological studies of the Pryor Mountain Wild Horse Range, 1992-1997

Ecological Studies of the Pryor Mountain Wild Horse Range, 1992-1997 provides a synthesis of key findings of landscape-scale, interdisciplinary studies of the effects of wild horses and native ungulates on a rugged, mountain ecosystem. This is perhaps the most comprehensive study of a wild horse herd conducted. This was a complex study and one involving a truly interagency approach. Six agencies either provided input to research priority setting, funding, or both. The agencies included the Bureau of Land Management, National Park Service, U.S. Geological Survey, Montana Department of Fish, Wildlife and Parks, Wyoming Game and Fish Department, and U.S. Forest Service. The major research direction and effort came from the U.S. Geological Survey and Natural Resources Ecology Lab, Colorado State University with Montana State University and the University of Kentucky also participating. Ungulate monitoring was conducted by the U.S. Geological Survey, Biological Resources Division, Bureau of Land Management, Billings Field Office and the Montana Fish and Wildlife Parks, with funding by Bighorn Canyon National Recreation Area. Many other individuals and groups were involved and deserve credit. The report printing was made possible with funds from the Bureau of Land Management, Wild Horse and Burro Program, Washington Office. This report was prepared by the Information Management Project, Midcontinent Ecological Science Center, U.S. Geological Survey.

Montana, Wyoming

A floral survey of cliff habitats along Bull Run at Manassas National Battlefield Park, Virginia, 2014

Isolated patches of native vegetation in human-modified landscapes are important reservoirs of biological diversity because they may be the only places in which rare or native species can persist. Manassas National Battlefield Park, Virginia, is an island embedded in a matrix of intensively modified lands; it is becoming increasingly isolated due to growth of the greater Washington, D.C. area. A series of cliffs along Bull Run support an eastern white pine community disjunct from its more typical range in the Appalachian Mountains. Cliffs frequently support vegetation communities that differ from surrounding habitat. In this ecological context, the cliffs along Bull Run are islands of specialized habitat within an island of natural and semi-natural communities (the park), surrounded by a human-dominated landscape. A floral survey of these cliffs was a top priority identified by the National Park Service National Capital Region via the National Resource Preservation Program; in 2014, we completed a floral survey of 11 cliffs in the park. We recorded 282 species in 194 genera and 83 families, including 23 newly documented species for the park.

Virginia

Digitized generalized areas where surface-water resources likely or potentially are susceptible to groundwater withdrawals in adjacent valleys, Great Basin National Park area, Nevada

Abstract Polygons delineate generalized areas in and around Great Basin National Park where surface-water resources likely or potentially are susceptible to groundwater withdrawals in adjacent valleys. Purpose This data set was created as part of a U.S. Geological Survey study, done in cooperation with the National Park Service, to characterize surface-water resources in and around Great Basin National Park. The intended uses of this data set include, but are not limited to, natural resource modeling, mapping, and visualization applications. Source Information SIR 2006-5099, Plate 1: Generalized areas where surface-water resources likely or potentially are susceptible to ground-water withdrawals in adjacent valleys, Great Basin National Park area, Nevada.

Nevada

Final project memorandum: sea-level rise modeling handbook: resource guide for resource managers, engineers, and scientists

Coastal wetlands of the Southeastern United States are undergoing retreat and migration from increasing tidal inundation and saltwater intrusion attributed to climate variability and sea-level rise. Much of the literature describing potential sea-level rise projections and modeling predictions are found in peer-reviewed academic journals or government technical reports largely suited to reading by other Ph.D. scientists who are more familiar or engaged in the climate change debate. Various sea-level rise and coastal wetland models have been developed and applied of different designs and scales of spatial and temporal complexity for predicting habitat and environmental change that have not heretofore been synthesized to aid natural resource managers of their utility and limitations. Training sessions were conducted with Federal land managers with U.S. Fish and Wildlife Service, National Park Service, and NOAA National Estuarine Research Reserves as well as state partners and nongovernmental organizations across the northern Gulf Coast from Florida to Texas to educate and to evaluate user needs and understanding of concepts, data, and modeling tools for projecting sea-level rise and its impact on coastal habitats and wildlife. As a result, this handbook was constructed from these training and feedback sessions with coastal managers and biologists of published decision-support tools and simulation models for sea-level rise and climate change assessments. A simplified tabular context was developed listing the various kinds of decision-support tools and ecological models along with criteria to distinguish the source, scale, and quality of information input and geographic data sets, physical and biological constraints and relationships, datum characteristics of water and land elevation components, utility options for setting sea-level rise and climate change scenarios, and ease or difficulty of storing, displaying, or interpreting model output. The handbook is designed to be a primer to understanding sea-level rise and a practical synthesis of the current state of knowledge and modeling tools as a resource guide for DOl land management needs and facilitating Landscape Conservation Cooperative (LCC) research and conservation initiatives.

Conference Paper

Proceedings of the fourth conference on research in California's National Parks

The papers in this proceedings were selected from the 63 presentations given at the Fourth Biennial Conference on Research in National Parks in California. The overall theme for this meeting was a recurring one: “The Integration of Research into National Park Service Resource Management Decisions.” The conference was held at the University of California, Davis, on 10-12 September 1991 and was sponsored by the National Park Service Cooperative Park Studies Unit and the Institute of Ecology at the University of California, Davis. This proceedings highlights a variety of research and resource management efforts to improve the stewardship of our most treasured landscapes. In the future, it will become increasingly more important for federal and state agencies, university scientists and students, and the public to cooperate fully to improve the quantity and quality of science and resource management programs in units of the National Park System. As many of the papers in this proceedings attest, we must look beyond the political boundaries of protected landscapes to incorporate entire ecosystems. Competing resource uses inside and outside parklands must be reexamined to weave a common thread of biological conservation. As scientists, our studies must bridge the gap from plots to landscapes and from landscapes to regions. Our studies must built on information from species and populations to ecosystems and the processes that influence them. The papers in this proceedings are modest but important contribution to those ideals. Each paper represents original research and has been peer-reviewed. Many agencies, institutions, and individuals contributed in the development of this product. In the planning stages, National Park Service Western Region scientists provided advice and assistance in structuring the conference format. University of California, Davis, graduate students, directed by Sharon Lynch, assisted with logistics at the meeting, and provided general assistance with the paper sessions. We thank the students, technicians, and support staff who labored unselfishly behind the scenes to collect data and transfer information important to the completion of each paper. Financial support for this publication was provided with funds from the Western Region Resource Management and Resource Program and the Washington Office Servicewide Publications Program of the National Park Service. We thank Denny Fenn, Stan Albright, Bruce Kilgore, Dave Cherry, Gene Hester, and Donna O'Leary of the National Park Service and Charles Goldman of the University of California, Davis, Institute of Ecology for their support throughout the development of the proceedings. Finally, we are entering into a new age of research in the U.S. Department of the Interior. Recently, plans were announced for the creation of the National Biological Survey, dedicated to improving the quantity and quality of research necessary for the wise stewardship of our natural resources and wildlands. We welcome our new partners and pledge our full support to both the new and old agencies. The papers presented here--and past research efforts in national parks--provide an important stepping stone to the future. While many of us will be transferred administratively to the National Biological Survey, our emotional ties to the National Park Service mission of preserving resources for future generations will remain with us forever.

California

Balancing natural resource use and extraction of uranium and other elements in the Grand Canyon region

The Grand Canyon region is an important natural, cultural, and archeological resource known worldwide. The region contains uranium resources that could be used to generate electricity. The U.S. Geological Survey (USGS), in cooperation with the National Park Service, Bureau of Land Management, and U.S. Department of Agriculture Forest Service, is conducting studies to answer questions about the environmental effects of mining uranium and other associated elements in the region.

Arizona

A Framework for Long-term Ecological Monitoring in Olympic National Park: Prototype for the Coniferous Forest Biome

This report is the result of a five-year collaboration between scientists of the U.S. Geological Survey Forest and Rangeland Ecosystem Science Center, Olympic Field Station, and the natural resources staff of Olympic National Park to develop a comprehensive strategy for monitoring natural resources of Olympic National Park. Olympic National Park is the National Park Serviceʼs prototype monitoring park, representing parks in the coniferous forest biome. Under the umbrella of the National Park Serviceʼs prototype parks program, U.S. Geological Survey and Olympic National Park staffs are obligated to: develop strategies and designs for monitoring the long-term health and integrity of national park ecosystems with a significant coniferous forest component. design exportable monitoring protocols that can be used by other parks within the coniferous forest biome (i.e., parks having similar environments), and create a demonstration area and ʻcenter of excellenceʼ for assisting other parks in developing ecological monitoring programs. Olympic National Park is part of the North Coast and Cascades Network, a network of seven Pacific Northwestern park units created recently by the National Park Serviceʼs Inventory and Monitoring Program to extend the monitoring of ʻvital signsʼ of park health to all National Park Service units. It is our intent and hope that the monitoring strategies and conceptual models described here will meet the overall purpose of the prototype parks monitoring program in proving useful not only to Olympic National Park, but also to parks within the North Coast and Cascades Network and elsewhere. Part I contains the conceptual design and sampling framework for the prototype long-term monitoring program in Olympic National Park. In this section, we explore key elements of monitoring design that help to ensure the spatial, ecological, and temporal integration of monitoring program elements and discuss approaches used to design an ecosystem-based monitoring program. Basic monitoring components include ecosystem drivers, (e.g., climate, atmospheric inputs, human pressures), indicators of ecosystem integrity (e.g., biogeochemical indicators), known threats (e.g., impacts of introduced mountain goats), and focal or ʻkeyʼ species (e.g., rare or listed species, Roosevelt elk). Monitoring system drivers and key indicators of ecosystem integrity provide the long-term baseline needed to judge what constitutes ʻunnaturalʼ variation in park resources and provide the earliest possible warning of unacceptable change. Monitoring effects of known threats and the status of focal species will provide information useful to park managers for dealing with current park issues. In Part I we describe the process of identifying potential indicators of ecological condition and present conceptual models of park ecosystems. In addition we report results from several workshops held in conjunction with Olympic National Park aimed at identifying potential indicators of change in the parkʼs ecosystem. First, we describe the responses of Olympic National Park staff to the generic question, “What is the most important resource to monitor in Olympic National Park and why?” followed by the responses from resource and land managers from areas adjoining the park. We also catalogue the responses of various expert groups that we asked to help identify the most appropriate system drivers and indicators of change in the Olympic National Park ecosystems. Results of the workshops provided the justification for selecting basic indicators of ecosystem integrity, effects of current threats to park resources, and focal resources of parks to detect both the currently evident and unforeseeable changes in park resources. We conclude Part I by exploring several generic statistical issues relevant to monitoring natural resources in Olympic National Park. Specifically we discuss trade-offs associated with sampling extensively versus sampling intensively in smaller geographic regions and describe a conceptual framework to guide development of a generic sampling frame for monitoring. We recommend partitioning Olympic National Park into three zones of decreasing accessibility to maximize monitoring efficiency. We present examples of how the generic sampling frame could be used to help ensure spatial integration of individual monitoring projects. Part II of the report is a record of the potential monitoring questions and indicators identified to date in our workshops. The presentation is organized according to the major system drivers, components, and processes identified in the intermediate-level working model of the Olympic National Park ecosystem. For each component of the park system, we develop the need and justification for monitoring, articulate park management issues, and describe key resources and ecosystem functions. We also present a pictorial conceptual model of each ecological subsystem, identify monitoring questions, and list potential indicators for each monitoring question. We conclude each section by identifying linkages of indicators to other ecological subsystems in our general ecosystem model, spatial and temporal contexts for monitoring (where and how often to monitor), and research and development needs. Part II represents the most current detailed listing of potential indicators—the material for subsequent discussions of monitoring priorities and selection of indicators for protocol development. Collectively, the sections of this report contain a comprehensive list of the important monitoring questions and potential indicators as well as recommendations for designing an integrated monitoring program. In Part I, Chapter 6 we provide recommendations on how to proceed with the important next steps in the design process: establishing priorities among the many possible monitoring questions and indicators, and beginning to research and design effective long-term monitoring protocols.

Information and Technology Report

Trip report: pilot study of factors linking watershed function and coastal ecosystem health in American Samoa

Coral reef resources in the territory of American Samoa face significant problems from overfishing, non-point source pollution, global warming, and continuing population growth and development. The islands are still relatively isolated relative to other parts of the Pacific and have managed to avoid some of the more devastating invasive species that have reached other archipelagoes. As a result, there are opportunities for collaborative and integrative research and monitoring programs to help restore and maintain biodiversity and functioning natural ecosystem in the archipelago. We found that the “Ridge to Reef” paradigm already exists in American Samoa, with a high degree of interagency cooperation and efficient use of limited resources already taking place in the Territory. USGS may be able to make contributions as a partner organization in the Coral Reef Advisory Group (CRAG) through deployment of sediment monitoring instrumentation to supplement stream monitoring by the American Samoa Environmental Protection Agency, by providing high resolution vegetation and land-use maps of main islands, by providing additional support to the American Samoa Department of Marine and Wildlife Resources and the National Park Service for monitoring of invasive species, by working with members of CRAG to initiate sediment transport studies on Samoan reefs, and by developing new projects on the effects of bacterial contamination and pollutants on coral reef physiology and demography.

Open-File Report

Water-quality assessment of the Merced River, California

The Merced River and its major tributaries have been subject of water-quality and water-quantity studies by local, State, and Federal agencies since before 1900. Data have been compiled and analyzed, and even though water-quality problems exist in the basin, the water generally is of good quality for most of the beneficial uses defined by the California State Water Resources Control Board. Water-quality objectives for dissolved oxygen, pesticides, and pH were violated in some parts of the basin. The most likely cause of the dissolved-oxygen and pesticide violations is the return of agricultural irrigation water to the river in the lower 30 miles of the river. Violations of pH objectives occurred only in the upper drainage and were likely due to naturally occurring, poorly buffered water. Water quality is currently being monitored at three stations in the basin by California Department of Water Resources, at one station by the U.S. Geological Survey, and at several sites by the National Park Service. Modifications to the current water-quality monitoring program are proposed to gain further information on dissolved-oxygen fluctuations and pesticide concentrations in the lower river and to investigate nutrient input to Lake McClue. (USGS)

Open-File Report

A Servicewide Benthic Mapping Program for National Parks

In 2007, the National Park Service (NPS) Inventory and Monitoring Program directed the initiation of a benthic habitat mapping program in ocean and coastal parks in alignment with the NPS Ocean Park Stewardship 2007-2008 Action Plan. With 74 ocean and Great Lakes parks stretching over more than 5,000 miles of coastline across 26 States and territories, this Servicewide Benthic Mapping Program (SBMP) is essential. This program will deliver benthic habitat maps and their associated inventory reports to NPS managers in a consistent, servicewide format to support informed management and protection of 3 million acres of submerged National Park System natural and cultural resources. The NPS and the U.S. Geological Survey (USGS) convened a workshop June 3-5, 2008, in Lakewood, Colo., to discuss the goals and develop the design of the NPS SBMP with an assembly of experts (Moses and others, 2010) who identified park needs and suggested best practices for inventory and mapping of bathymetry, benthic cover, geology, geomorphology, and some water-column properties. The recommended SBMP protocols include servicewide standards (such as gap analysis, minimum accuracy, final products) as well as standards that can be adapted to fit network and park unit needs (for example, minimum mapping unit, mapping priorities). SBMP Mapping Process. The SBMP calls for a multi-step mapping process for each park, beginning with a gap assessment and data mining to determine data resources and needs. An interagency announcement of intent to acquire new data will provide opportunities to leverage partnerships. Prior to new data acquisition, all involved parties should be included in a scoping meeting held at network scale. Data collection will be followed by processing and interpretation, and finally expert review and publication. After publication, all digital materials will be archived in a common format. SBMP Classification Scheme. The SBMP will map using the Coastal and Marine Ecological Classification Standard (CMECS) that is being modified to include all NPS needs, such as lacustrine ecosystems and submerged cultural resources. CMECS Version III (Madden and others, 2010) includes components for water column, biotic cover, surface geology, sub-benthic, and geoform. SBMP Data Archiving. The SBMP calls for the storage of all raw data and final products in common-use data formats. The concept of 'collect once, use often' is essential to efficient use of mapping resources. Data should also be shared with other agencies and the public through various digital clearing houses, such as Geospatial One-Stop (http://gos2.geodata.gov/wps/portal/gos). To be most useful for managing submerged resources, the SBMP advocates the inventory and mapping of the five components of marine ecosystems: surface geology, biotic cover, geoform, sub-benthic, and water column. A complete benthic inventory of a park would include maps of bathymetry and the five components of CMECS. The completion of mapping for any set of components, such as bathymetry and surface geology, or a particular theme (for example, submerged aquatic vegetation) should also include a printed report.

Open-File Report

U.S. Geological Survey—Energy and wildlife research annual report for 2017

Introduction Terrestrial and aquatic ecosystems provide valuable services to humans and are a source of clean water, energy, raw materials, and productive soils. The Nation’s food supply is more secure because of wildlife. For example, native pollinators enhance agricultural crops, and insect-eating bats provide pest control services worth billions of dollars to farmers annually. Fish and wildlife are also vital to a vibrant outdoor recreation and tourism industry. Recreational activities, such as hunting, shooting, boating, and angling, generated \$1.1 billion in excise taxes paid to State wildlife agencies in 2017. National parks, wildlife refuges, and monuments accounted for $35 billion in economic output and 318,000 jobs nationwide in 2016. Additional economic benefits are generated from the use and enjoyment of wildlife in State-owned lands and waters. Although the United States is rich in natural resources, human activity continues to place new pressures on fish and wildlife and the habitats they rely on. The United States became the world’s top producer of petroleum and natural gas products in 2012, surpassing Russia’s natural gas production levels in 2009 and Saudi Arabia’s petroleum production in 2013. The U.S. Energy Information Administration projects that the demand for liquid fuel, natural gas, and renewable energy will show strong growth in the next 20 years. Wind energy has demonstrated consistent growth since 2007 with now more than 53,000 wind turbines contributing to power grids in 41 States, Guam, and Puerto Rico. Solar energy has seen rapid growth since 2013 and made up nearly one-third of the total electricity generation additions in 2016. Yet as our Nation works to advance energy security and sustain wildlife, some conflicts have surfaced. Impacts of an expanding energy infrastructure include fragmentation and loss of habitat as well as mortality of birds, bats, fish, and other animals from interactions with energy generation facilities. Because energy development can often occur in wildlife habitats, ecological science can help guide project siting and operational decisions to areas that present the lowest risk to wildlife and energy developers. To address these challenges and make the most of new opportunities, the U.S. Geological Survey is producing innovative science to develop workable solutions that can help sustain wildlife and the habitat they rely upon, while allowing informed development.

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