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USGS2025

Real-time oil spill concentration assessment through fluorescence imaging and deep learning

Oil spills may pose severe ecological and socioeconomic threats, necessitating rapid and accurate environmental assessment. Traditional assessment methods used to determine the extent of a spill including gas chromatography-mass spectrometry, satellite imaging, and visual surveys, are often time-consuming, expensive, and limited by weather conditions or sampling constraints. Furthermore, these methods frequently struggle to provide real-time data crucial for prompt decision-making during spill emergencies. This study addresses these limitations by combining fluorescence imaging, deep learning, a mobile application, and a data management system for automated and real-time oil spill assessment. Our approach leverages a convolutional neural network architecture for feature extraction coupled with a custom regression model, trained and evaluated on a self-curated comprehensive dataset of 1,530 fluorescence images from two distinct oil types, a napthalenic crude oil and an aromatic-napthalenic crude oil, at concentrations ranging from 0 to 500 mg/L. The proposed approach demonstrates superior performance compared to both traditional machine learning models and more complex deep learning architectures, achieving an R² score of 0.9958 and RMSE of 9.28. The application enables rapid, cost-effective field measurements with robust data tracking and analysis capabilities. This research advances oil spill monitoring technology with a scalable solution that balances accuracy, speed, and accessibility for real-time environmental assessment and emergency response.

Journal of Hazardous Materials↗

USGS2023

Advances in morphodynamic modeling of coastal barriers: A review

As scientific understanding of barrier morphodynamics has improved, so has the ability to reproduce observed phenomena and predict future barrier states using mathematical models. To use existing models effectively and improve them, it is important to understand the current state of morphodynamic modeling and the progress that has been made in the field. This manuscript offers a review of the literature regarding advancements in morphodynamic modeling of coastal barrier systems and summarizes current modeling abilities and limitations. Broadly, this review covers both event-scale and long-term morphodynamics. Each of these sections begins with an overview of commonly modeled phenomena and processes, followed by a review of modeling developments. After summarizing the advancements toward the stated modeling goals, we identify research gaps and suggestions for future research under the broad categories of improving our abilities to acquire and access data, furthering our scientific understanding of relevant processes, and advancing our modeling frameworks and approaches.

Virginia↗

USGS1995

Journal news

Statistical power (and conversely, Type II error) is often ignored by biologists. Power is important to consider in the design of studies, to ensure that sufficient resources are allocated to address a hypothesis under examination. Deter- mining appropriate sample size when designing experiments or calculating power for a statistical test requires an investigator to consider the importance of making incorrect conclusions about the experimental hypothesis and the biological importance of the alternative hypothesis (or the biological effect size researchers are attempting to measure). Poorly designed studies frequently provide results that are at best equivocal, and do little to advance science or assist in decision making. Completed studies that fail to reject Ho should consider power and the related probability of a Type II error in the interpretation of results, particularly when implicit or explicit acceptance of Ho is used to support a biological hypothesis or management decision. Investigators must consider the biological question they wish to answer (Tacha et al. 1982) and assess power on the basis of biologically significant differences (Taylor and Gerrodette 1993). Power calculations are somewhat subjective, because the author must specify either f or the minimum difference that is biologically important. Biologists may have different ideas about what values are appropriate. While determining biological significance is of central importance in power analysis, it is also an issue of importance in wildlife science. Procedures, references, and computer software to compute power are accessible; therefore, authors should consider power. We welcome comments or suggestions on this subject.

Journal of Wildlife Management↗

USGS2022

Adaptive problem maps (APM): Connecting data dots to build increasingly informed and defensible environmental conservation decisions

Connecting individual datasets from different projects to each other and to decisions can help manager-researcher-administrator teams build on what is known and adapt their environmental decision-making process as new information becomes available. Throughout their careers, environmental professionals often collect data on many individual projects that address similar sets of natural resource conservation problems. Consequently, the institutions, agencies, and organizations that employ these environmental professionals accumulate a large reservoir of project-specific information. However, bigger-picture opportunities to advance broader natural resource conservation goals are lost if individual projects and datasets are not integrated. Here we illustrate how our adaptive problem mapping (APM) process provides a framing and internal structure that charts relationships among pertinent information types, germane data sets, applicable concepts, and relevant decisions. In the APM process, appropriately defined problem statements and coordinated bridging questions connect data and concepts to build a network of increasingly informed and defensible decisions. Although our APM process can be applied to many environmental problems, here we focus on examples from aquatic systems in which fish are conservation priorities. Prioritizing an initial evaluation and regular modification of the relationships among datasets and decisions using the APM process helps manager-research-administrator teams envision, track, and update what is known, unknown, learned, and needed. The resulting broader point of view advances strategic planning, evaluations of progress, assessments of opportunity costs, identification of options, and justifications of decision-related actions.

Journal of Environmental Management↗

USGS2004

Toward a scientifically rigorous basis for developing mapped ecological regions.

Despite the wide use of ecological regions in conservation and resource-management evaluations and assessments, a commonly accepted theoretical basis for ecological regionalization does not exist. This fact, along with the paucity of focus on ecological regionalization by professional associations, journals, and faculties, has inhibited the advancement of a broadly acceptable scientific basis for the development, use, and verification of ecological regions. The central contention of this article is that ecological regions should improve our understanding of geographic and ecological phenomena associated with biotic and abiotic processes occurring in individual regions and also of processes characteristic of interactions and dependencies among multiple regions. Research associated with any ecoregional framework should facilitate development of hypotheses about ecological phenomena and dominant landscape elements associated with these phenomena, how these phenomena are structured in space, and how they function in a hierarchy. Success in addressing the research recommendations outlined in this article cannot occur within an ad hoc, largely uncoordinated research environment. Successful implementation of this plan will require activities--coordination, funding, and education--that are both scientific and administrative in nature. Perhaps the most important element of an infrastructure to support the scientific work of ecoregionalization would be a national or international authority similar to the Water and Science Technology Board of the National Academy of Sciences.

Environmental Management↗

USGS2023

Ten best practices for effective phenological research

The number and diversity of phenological studies has increased rapidly in recent years. Innovative experiments, field studies, citizen science projects, and analyses of newly available historical data are contributing insights that advance our understanding of ecological and evolutionary responses to the environment, particularly climate change. However, many phenological data sets have peculiarities that are not immediately obvious and can lead to mistakes in analyses and interpretation of results. This paper aims to help researchers, especially those new to the field of phenology, understand challenges and practices that are crucial for effective studies. For example, researchers may fail to account for sampling biases in phenological data, struggle to choose or design a volunteer data collection strategy that adequately fits their project’s needs, or combine data sets in inappropriate ways. We describe ten best practices for designing studies of plant and animal phenology, evaluating data quality, and analyzing data. Practices include accounting for common biases in data, using effective citizen or community science methods, and employing appropriate data when investigating phenological mismatches. We present these best practices to help researchers entering the field take full advantage of the wealth of available data and approaches to advance our understanding of phenology and its implications for ecology.

International Journal of Biometeorology↗

USGS1998

Coalbed methane: from hazard to resource

Coalbed gas, which mainly consists of methane, has remained a major hazard affecting safety and productivity in underground coal mines for more than 100 yr. Coalbed gas emissions have resulted in outbursts and explosions where ignited by open lights, smoking or improper use of black blasting powder, and machinery operations. Investigations of coal gas outbursts and explosions during the past century were aimed at predicting and preventing this mine hazard. During this time, gas emissions were diluted with ventilation by airways (eg, tunnels, vertical and horizontal drillholes, shsfts) and by drainage boreholes. The 1970s 'energy crisis' led to studies of the feasibility of producing the gas for commercial use. Subsequent research on the origin, accumulation, distribution, availability, and recoverability has been pursued vigorously during the past two decades. Since the 1970s research investigations on the causes and effects of coal mine outbursts and gas emissions have led to major advances towards the recovery and development of coalbed methane for commercial use. Thus, coalbed methane as a mining hazard was harnessed as a conventional gas resource.Coalbed gas, which mainly consists of methane, has remained a major hazard affecting safety and productivity in underground coal mines for more than 100 years. Coalbed gas emissions have resulted in outbursts and explosions where ignited by open lights, smoking or improper use of black blasting powder, and machinery operations. Investigations of coal gas outbursts and explosions during the past century were aimed at predicting and preventing this mine hazard. During this time, gas emissions were diluted with ventilation by airways (e.g., tunnels, vertical and horizontal drillholes, shafts) and by drainage boreholes. The 1970's `energy crisis' led to studies of the feasibility of producing the gas for commercial use. Subsequent research on the origin, accumulation, distribution, availability, and recoverability has been pursued vigorously during the past two decades. Since the 1970's research investigations on the causes and effects of coal mine outbursts and gas emissions have led to major advances towards the recovery and development of coalbed methane for commercial use. Thus, coalbed methane as a mining hazard was harnessed as a conventional gas resource.

International Journal of Coal Geology↗

USGS2018

Biota connect aquatic habitats throughout freshwater ecosystem mosaics

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Journal of the American Water Resources Associatio↗

USGS2006

Growth and collapse of Hawaiian volcanoes

This special issue is an outgrowth of a session of the same name held at the 2003 Fall Meeting of the American Geophysical Union (AGU) in San Francisco. The session served dual purposes: to highlight recent advances in our understanding of the development and internal structure of Hawaiian volcanoes, and to recognize the important contributions of James Moore to this field of study.

Hawai'i↗

USGS2015

A sinuous tumulus over an active lava tube at Kīlauea Volcano: evolution, analogs, and hazard forecasts

Inflation of narrow tube-fed basaltic lava flows (tens of meters across), such as those confined by topography, can be focused predominantly along the roof of a lava tube. This can lead to the development of an unusually long tumulus, its shape matching the sinuosity of the underlying lava tube. Such a situation occurred during Kīlauea Volcano's (Hawai'i, USA) ongoing East Rift Zone eruption on a lava tube active from July through November 2010. Short-lived breakouts from the tube buried the flanks of the sinuous, ridge-like tumulus, while the tumulus crest, its surface composed of lava formed very early in the flow's emplacement history, remained poised above the surrounding younger flows. At least several of these breakouts resulted in irrecoverable uplift of the tube roof. Confined sections of the prehistoric Carrizozo and McCartys flows (New Mexico, USA) display similar sinuous, ridge-like features with comparable surface age relationships. We contend that these distinct features formed in a fashion equivalent to that of the sinuous tumulus that formed at Kīlauea in 2010. Moreover, these sinuous tumuli may be analogs for some sinuous ridges evident in orbital images of the Tharsis volcanic province on Mars. The short-lived breakouts from the sinuous tumulus at Kīlauea were caused by surges in discharge through the lava tube, in response to cycles of deflation and inflation (DI events) at Kīlauea's summit. The correlation between DI events and subsequent breakouts aided in lava flow forecasting. Breakouts from the sinuous tumulus advanced repeatedly toward the sparsely populated Kalapana Gardens subdivision, destroying two homes and threatening others. Hazard assessments, including flow occurrence and advance forecasts, were relayed regularly to the Hawai'i County Civil Defense to aid their lava flow hazard mitigation efforts while this lava tube was active.

Hawaii↗

USGS1999

Potential impacts on Colorado Rocky Mountain weather due to land use changes on the adjacent Great Plains

Evidence from both meteorological stations and vegetational successional studies suggests that summer temperatures are decreasing in the mountain-plain system in northeast Colorado, particularly since the early 1980s. These trends are coincident with large changes in regional land cover. Trends in global, Northern Hemisphere and continental surface temperatures over the same period are insignificant. These observations suggest that changes in the climate of this mountain-plain system may be, in some part, a result of localized forcing mechanisms. In this study the effects of land use change on the northern Colorado plains, where large regions of grasslands have been transformed into both dry and irrigated agricultural lands, on regional weather is examined in an effort to understand this local deviation from larger-scale trends. We find with high-resolution numerical simulations of a 3-day summer period using a regional atmospheric-land surface model that replacing grasslands with irrigated and dry farmland can have impacts on regional weather and therefore climate which are not limited to regions of direct forcing. Higher elevations remote from regions of land use change are affected as well. Specifically, cases with altered landcover had cooler, moister boundary layers, and diminished low-level upslope winds over portions of the plains. At higher elevations, temperatures also were lower as was low-level convergence. Precipitation and cloud cover were substantially affected in mountain regions. We advance the hypothesis that observed land use changes may have already had a role in explaining part of the observed climate record in the northern Colorado mountain-plain system.

Journal of Geophysical Research D: Atmospheres↗

USGS2012

Mysis diluviana and Hemimysis anomala : reviewing the roles of a native and invasive mysid in the Laurentian Great Lakes region

Mysis diluviana and Hemimysis anomala are the only two species of mysid shrimps in the order Mysidacea that are present in the Laurentian Great Lakes of North America. M. diluviana has inhabited the deep, cold waters of this region since Pleistocene-era glacial retreat and is widely considered to have a central role in the functioning of offshore food webs in systems they inhabit. More recently, the Great Lakes were invaded by the Ponto-Caspian native Hemimysis , a species that inhabits warmer water and shallower depths relative to M. diluviana . Hemimysis has rapidly expanded throughout the Great Lakes region and has become integrated into nearshore food webs as both food for planktivorous fish and predators and competitors of zooplankton. This special issue is composed of 14 papers that represent the most recent advances in our understanding of the ecological importance of both species of mysids to lake and river ecosystems in the Great Lakes region of North America. Topics discussed in this special issue will inform future research in all systems influenced by mysid ecology.

Lake Erie;Lake Huron;Lake Michigan;Lake Ontario;La↗

USGS2020

Preparing wildlife for climate change: How far have we come?

Global biodiversity is in unprecedented decline and on-the-ground solutions are imperative for conservation. Although there is a large volume of evidence related to climate change effects on wildlife, research on climate adaptation strategies is lagging. To assess the current state of knowledge in climate adaptation, we conducted a comprehensive literature review and evaluated 1,346 peer-reviewed publications for management recommendations designed to address the consequences of climate change on wildlife populations. From 509 publications, we identified 2,306 recommendations and employed both qualitative and quantitative methods for data analysis. Although we found an increase in the volume and diversity of recommendations since 2007, a focus on protected areas (26%, 596 of 2,306 recommendations) and the non-reserve matrix (12%, 276 of 2,306 recommendations) remained prominent in the climate adaptation literature. Common concepts include protected areas, invasive species, ecosystem services, adaptive management, stepping stones, assisted migration, and conservation easements. In contrast, only 1% of recommendations focused on reproduction ( n = 26), survival ( n = 14), disease ( n = 26), or human-wildlife conflict ( n = 24). Few recommendations reflected the potential for local-scale management interventions. We demonstrate limited advancement in preparing natural resource managers in climate adaptation at local, management-relevant scales. Additional research is needed to identify and evaluate climate adaptation strategies aimed at reducing the vulnerability of wildlife to contemporary climate change. © 2020 The Wildlife Society.

Journal of Wildlife Management↗

USGS2002

Interactions between groundwater and surface water: The state of the science

The interactions between groundwater and surface water are complex. To understand these interactions in relation to climate, landform, geology, and biotic factors, a sound hydrogeoecological framework is needed. All these aspects are synthesized and exemplified in this overview. In addition, the mechanisms of interactions between groundwater and surface water (GW-SW) as they affect recharge-discharge processes are comprehensively outlined, and the ecological significance and the human impacts of such interactions are emphasized. Surface-water and groundwater ecosystems are viewed as linked components of a hydrologic continuum leading to related sustainability issues. This overview concludes with a discussion of research needs and challenges facting this evolving field. The biogeochemical processes within the upper few centimeters of sediments beneath nearly all surface-water bodies (hyporheic zone) have a profound effect on the chemistry of the water interchange, and here is where most of the recent research has been focusing. However, to advance conceptual and other modeling of GW-SW systems, a broader perspective of such interactions across and between surface-water bodies is needed, including multidimensional analyses, interface hydraulic characterization and spatial variability, site-to-region regionalization approaches, as well as cross-disciplinary collaborations.

Hydrogeology Journal↗

USGS2004

Scientific advances provide opportunities to improve pediatric environmental health

The health consequences of contaminants in the environment, with respect to the health of children and infants, recently have been dramatically brought to public attention by the motion pictures Erin Brockovich and A Civil Action . These productions focused public attention on the potential link between water contaminants and pediatric health, a continuing subject of public concern. As a consequence of the increasing production of new commercial chemicals, many chemicals have appeared in the scientific and public awareness as potential threats to health. These new or novel compounds eventually distribute in the environment and often are termed emerging contaminants . Gitterman and Bearer stated, "Children may serve as unwitting sentinels for society; they are often the youngest exposed to many environmental toxicants and may become the youngest in age to manifest adverse responses." The discipline of pediatric environmental health is still in its adolescence, but it will be increasingly important as new chemicals are generated and as more is learned about the health effects of chemicals already in commerce. Here, we provide an overview of recent advances in biomonitoring and environmental monitoring of environmental contaminants including emerging contaminants. Our purpose in writing this commentary is to make pediatricians aware of the current resources available for learning about pediatric environmental health and of ongoing research initiatives that provide opportunities to improve pediatric environmental health.

Journal of Pediatrics↗

USGS2006

Special issue: The changing shapes of active volcanoes: Recent results and advances in volcano geodesy

The 18 papers herein report on new geodetic data that offer valuable insights into eruptive activity and magma transport; they present new models and modeling strategies that have the potential to greatly increase understanding of magmatic, hydrothermal, and volcano-tectonic processes; and they describe innovative techniques for collecting geodetic measurements from remote, poorly accessible, or hazardous volcanoes. To provide a proper context for these studies, we offer a short review of the evolution of volcano geodesy, as well as a case study that highlights recent advances in the field by comparing the geodetic response to recent eruptive episodes at Mount St. Helens. Finally, we point out a few areas that continue to challenge the volcano geodesy community, some of which are addressed by the papers that follow and which undoubtedly will be the focus of future research for years to come.

Journal of Volcanology and Geothermal Research↗

USGS2007

Research activities at U.S. Government agencies in subsurface reactive transport modeling

The fate of contaminants in the environment is controlled by both chemical reactions and transport phenomena in the subsurface. Our ability to understand the significance of these processes over time requires an accurate conceptual model that incorporates the various mechanisms of coupled chemical and physical processes. Adsorption, desorption, ion exchange, precipitation, dissolution, growth, solid solution, redox, microbial activity, and other processes are often incorporated into reactive transport models for the prediction of contaminant fate and transport. U.S. federal agencies use such models to evaluate contaminant transport and provide guidance to decision makers and regulators for treatment issues. We provide summaries of selected research projects and programs to demonstrate the level of activity in various applications and to present examples of recent advances in subsurface reactive transport modeling.

Vadose Zone Journal↗

USGS2024

The potential for species distribution models to distinguish source populations from sinks

1. While species distribution models (SDM) are frequently used to predict species occurrences to help inform conservation management, there is limited evidence evaluating whether habitat suitability can reliably predict intrinsic growth rates or distinguish source from sink populations. Filling this knowledge gap is critical for conservation science, as applications of SDMs for management purposes ultimately depend on these typically unobserved population or metapopulation dynamics. 2. Using regression, we associate previously published population level estimates of intrinsic growth and abundance derived from a Bayesian analysis of mark-recapture data for 17 bird species found in the contiguous United States with SDM habitat suitability estimates fitted here to opportunistic data for these same species. We then use AUC to measure how well SDMs can distinguish populations categorized as sources and sinks, depending on their intrinsic growth rates estimated from the mark-recapture data. We built SDMs using two different approaches, boosted regression trees (BRT) and Generalized Linear Models (GLM), and compared their predictive performance. Each SDM was built with presence points obtained from eBird and 10 environmental variables previously selected to model intrinsic growth rates and abundance for these species. 3. We show that SDMs built with opportunistic data are poor predictors of species demography in general; both BRT and GLM explained very little spatial variation of intrinsic growth rate and population abundance (median R2 across 17 species was close to 0.1 for both SDM methods). SDMs do, however, estimate higher suitability for source populations as compared to sinks. Out of 13 species which had both source and sink populations, both BRT and GLM had AUC values greater than 0.7 for 7 species when discriminating between sources and sinks. 4. Habitat suitability have the potential to be a useful measure to indicate a population’s ability to sustain itself as a source population, however more research on a diverse set of taxa is essential to fully explore this potential. This interpretation of habitat suitability can be particularly useful for conservation practice, and identification of explicit cases of when and how SDMs fail to match population demography can be informative for advancing ecological theory.

Journal of Animal Ecology↗