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At least 55 records · Page 3Linked to original sources
USGS2016

Electronic archival tags provide first glimpse of bathythermal habitat use by free-ranging adult lake sturgeon Acipenser fulvescens

Information on lake sturgeon ( Acipenser fulvescens ) depth and thermal habitat use during non-spawning periods is unavailable due to the difficulty of observing lake sturgeon away from shallow water spawning sites. In 2002 and 2003, lake sturgeon captured in commercial trap nets near Sarnia, Ontario were implanted with archival tags and released back into southern Lake Huron. Five of the 40 tagged individuals were recaptured and were at large for 32, 57, 286, 301, and 880 days. Temperatures and depths recorded by archival tags ranged from 0 to 23.5 ºC and 0.1 to 42.4 m, respectively. For the three lake sturgeon that were at large for over 200 days, temperatures occupied emulated seasonal fluctuations. Two of these fish occupied deeper waters during winter than summer while the other occupied similar depths during non-spawning periods. This study provides important insight into depth and thermal habitat use of lake sturgeon throughout the calendar year along with exploring the feasibility of using archival tags to obtain important physical habitat attributes during non-spawning periods.

Lake Huron↗
USGS2021

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California—Fall 2019, sixth annual repor

The U.S. Geological Survey conducts ecological monitoring of rocky subtidal communities at four permanent sites around San Nicolas Island. The sites—Nav Fac 100, West End, Dutch Harbor, and Daytona 100—were based on ones that had been monitored since 1980 by the U.S. Geological Survey and, in cooperation with the U.S. Navy, were combined or expanded in 2014 for better comparability with monitoring programs conducted at the other California Channel Islands. At the sites, we counted a suite of kelps and invertebrates on benthic band transects, measured bottom cover of algae and sessile invertebrate species in quadrats, and counted and sized fish on swimming transects. Holdfast diameter and number of stipes of giant kelp ( Macrocystis pyrifera ) were recorded on these transects and size data were collected for urchins, sea stars, and shelled mollusks. Bottom temperatures were recorded at hourly intervals by archival data loggers that were deployed at the sites. Typically, this monitoring work is conducted semi-annually, in fall and spring. Because the spring 2020 trip was cancelled due to the Coronavirus Disease 2019 pandemic, this report focuses primarily on data collected in fall 2019 and makes comparisons with data collected in previous years, beginning in fall 2014. The sites are distributed around the island and differ in their physical and ecological characteristics. Nav Fac 100, situated on the north side of San Nicolas Island, has a relatively low benthic profile. The invasive brown alga Sargassum horneri was first observed at this site in 2015. West End, to the southwest of the island, also lacks much bottom relief but has more crevice habitat associated with boulders. For almost three decades, West End has been a focal point for the small, but growing, population of southern sea otters ( Enhydra lutris nereis ) at the island. Dutch Harbor, on the south side, has many high relief rocky reefs and had the greatest fish and non-motile invertebrate densities. Daytona 100, on the southeast side, has moderate relief and has remained a patchwork of kelp and sea urchin dominated areas. There were no major changes at the sites since spring 2019, but some trends observed during the last few years continued whereas others changed. Red urchins continued a declining trend (observed during the last 4 years) at Daytona 100. The wavy turban snail ( Megastraea undosa ) began to increase rapidly at Nav Fav 100 in 2015 and has subsequently been increasing at the other sites as well, after more than a decade of very low numbers at all sites. Sea star wasting syndrome, which has devastated multiple species of sea stars along the Pacific coast of North America, affected most species at San Nicolas Island in the year prior to the fall 2014 sampling. Since then, there has been a reduction in the number of bat stars ( Patiria miniata ), and very few sea stars of other species have been observed. There has been a slight recovery of P. miniata since 2016 but little sign of change in other species. All the sites had a slight decline in the densities of purple urchins following an increase during the previous 2 years. Long-term data are presented to illustrate trends and changes during almost four decades of monitoring this dynamic system.

Naval Base Ventura County, San Nicolas Island↗
USGS1993

Uptake of planar polychlorinated biphenyls and 2,3,7,8-substituted polychlorinated dibenzofurans and dibenzo- p -dioxins by birds nesting in the lower Fox River and Green Bay, Wisconsin, USA

The uptake of persistent polychlorinated hydrocarbons (PCHs) by four avian species was investigated at upper trophic levels of two aquatic food chains of the lower Fox River and Green Bay, Wisconsin. Accumulation of total and specific planar polychlorinated biphenyls (PCBs), polychlorinated dibenzofurans (PCDFs), polychlorinated dibenzo-p-dioxin (PCDDs), and H411E rat hepatoma cell bioassay-derived 2,37,8-tetrachlorodibenzop-dioxin equivalents (TCDD-EQ) was evaluated in Forster's tern ( Sterna forsteri ) and common tern ( Sterna hirundo ) chicks, and in tree swallow ( Tachycineta bicolor ) and red-winged blackbird ( Agelaius phoeniceus ) nestlings from colonies nesting in several locations within the watershed. Concentrations of the PCHs were greatest in eggs and chicks of the two tern species, less in the tree swallows and least in the red-winged blackbirds. Young of all four species accumulated total PCBs, PCB congeners 77, 105, 126, and 169, and TCDD-EQ. The young birds also accumulated small concentrations of several 2,3,7,8-sbustituted PCDF and PCDD congeners. Uptake rates for certain of the PCHs for the Forster's tern chicks were: 15 μg/day for total PCBs, 70, 200, 6.5, and 0.14 ng/day for PCB congeners 77, 105, 126, and 169, respectively, and 270 μg/day for TCDD-EQ. Principal components analysis revealed that the patterns of PCH concentrations in the samples were influenced by species of bird, their age (or length of exposure) and nesting location. Collectively, our findings demonstrate that exposure of avian species to contaminants derived from aquatic food chains can be characterized and quantified for the purposes of ecological risk assessment.

Wisconsin↗
USGS2019

Drift of larval darters (Family Percidae) in the upper Roanoke River basin, USA, characterized using phenotypic and DNA barcoding markers

Larval fish ecology is poorly characterized because sampling is difficult and tools for phenotypically identifying larvae are poorly developed. While DNA barcoding can help address the latter problem, ‘universal’ primers do not work for all fish species. The Roanoke River in the southeastern United States includes seven darters (Family Percide: Tribe Etheostomatini). We made 393 collections of larval fishes in 2015 and 2018, examined darter larvae for morphometric and pigmentation traits, developed PCR primers amplifying darter DNA, and evaluated three gear types for collecting larval darters. Amplified DNA sequences for 1351 larvae matched archived mitochondrial cytochrome oxidase I sequences for darters occurring in the ecosystem. Larval darters were classified to genus with 100% accuracy using the ratio of pectoral fin length to body length; however, identification to species using morphometrics alone was subject to a misclassification rate of 11.8%, which can be resolved by considering pigmentation patterns. Gear-types varied considerably in their capture efficacy for larval darters; most Percina larvae were collected in drift nets. Larval Percina species appeared in the drift before Etheostoma species in both study years. Application of molecular genetic and phenotypic tools to larval fish identification can advance understanding of larval darter ecology.

North Carolina, Virginia↗
USGS2016

Tick-, mosquito-, and rodent-borne parasite sampling designs for the National Ecological Observatory Network

Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data on infection rates among vectors and reservoirs, the National Ecological Observatory Network (NEON) will collect measurements and samples of a suite of tick-, mosquito-, and rodent-borne parasites through a continental-scale surveillance program. Here, we describe the sampling designs for these efforts, highlighting sampling priorities, field and analytical methods, and the data as well as archived samples to be made available to the research community. Insights generated by this sampling will advance current understanding of and ability to predict changes in infection and disease dynamics in novel, interdisciplinary, and collaborative ways.

Ecosphere↗
USGS2021

Biogeography and ecology of Ostracoda in the U.S. northern Bering, Chukchi, and Beaufort Seas

Ostracoda (bivalved Crustacea) comprise a significant part of the benthic meiofauna in the Pacific-Arctic region, including more than 50 species, many with identifiable ecological tolerances. These species hold potential as useful indicators of past and future ecosystem changes. In this study, we examined benthic ostracodes from nearly 300 surface sediment samples, >34,000 specimens, from three regions—the northern Bering, Chukchi and Beaufort Seas—to establish species’ ecology and distribution. Samples were collected during various sampling programs from 1970 through 2018 on the continental shelves at 20 to ~100m water depth. Ordination analyses using species’ relative frequencies identified six species, Normanicythere leioderma , Sarsicytheridea bradii , Paracyprideis pseudopunctillata , Semicytherura complanata , Schizocythere ikeyai , and Munseyella mananensis , as having diagnostic habitat ranges in bottom water temperatures, salinities, sediment substrates and/or food sources. Species relative abundances and distributions can be used to infer past bottom environmental conditions in sediment archives for paleo-reconstructions and to characterize potential changes in Pacific-Arctic ecosystems in future sampling studies. Statistical analyses further showed ostracode assemblages grouped by the summer water masses influencing the area. Offshore-to-nearshore transects of samples across different water masses showed that complex water mass characteristics, such as bottom temperature, productivity, as well as sediment texture, influenced the relative frequencies of ostracode species over small spatial scales. On the larger biogeographic scale, synoptic ordination analyses showed dominant species— N . leioderma (Bering Sea), P . pseudopunctillata (offshore Chukchi and Beaufort Seas), and S . bradii (all regions)—remained fairly constant over recent decades. However, during 2013–2018, northern Pacific species M . mananensis and S . ikeyai increased in abundance by small but significant proportions in the Chukchi Sea region compared to earlier years. It is yet unclear if these assemblage changes signify a meiofaunal response to changing water mass properties and if this trend will continue in the future. Our new ecological data on ostracode species and biogeography suggest these hypotheses can be tested with future benthic monitoring efforts.

PLoS ONE↗
USGS2021

Stock composition of the historical New York Bight Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) intercept fishery revealed through microsatellite analysis of archived spines

A targeted commercial fishery for Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus once operated in the New York Bight, where it was assumed that most harvested Atlantic Sturgeon were natal to the Hudson River population. However, more recent evidence suggests that the fishery may have been targeting a mixed-stock aggregation, in which case harvested Atlantic Sturgeon could have been comprised of individuals from multiple populations throughout the species’ range. Although there is now a moratorium on Atlantic Sturgeon harvest in the New York Bight, modern molecular approaches provide an opportunity to use archived tissues to perform a retrospective mixed-stock analysis on the fishery. Genomic DNA extracted from archived fin spines from 80 Atlantic Sturgeon collected nearly 30 years ago suggests that the fishery primarily harvested individuals from the Hudson River population. However, based on individual-based assignment tests, our results indicate that the fishery also harvested individuals from at least eight other populations located throughout the species’ range. This study highlights how archival hard parts that were previously used for age and growth analyses can be employed for retrospective genetic analyses. Further, because the New York Bight harbors relatively high concentrations of Atlantic Sturgeon, the study shows how localized management decisions can influence Atlantic Sturgeon conservation at rangewide scales. When integrated with more recent knowledge of species ecology, these analyses can be used to evaluate the efficacy of previous management strategies and understand the effects of historical processes on contemporary demography.

New York↗
USGS2016

Supporting diverse data providers in the open water data initiative: Communicating water data quality and fitness of use

Shared, trusted, timely data are essential elements for the cooperation needed to optimize economic, ecologic, and public safety concerns related to water. The Open Water Data Initiative (OWDI) will provide a fully scalable platform that can support a wide variety of data from many diverse providers. Many of these will be larger, well-established, and trusted agencies with a history of providing well-documented, standardized, and archive-ready products. However, some potential partners may be smaller, distributed, and relatively unknown or untested as data providers. The data these partners will provide are valuable and can be used to fill in many data gaps, but can also be variable in quality or supplied in nonstandardized formats. They may also reflect the smaller partners' variable budgets and missions, be intermittent, or of unknown provenance. A challenge for the OWDI will be to convey the quality and the contextual “fitness” of data from providers other than the most trusted brands. This article reviews past and current methods for documenting data quality. Three case studies are provided that describe processes and pathways for effective data-sharing and publication initiatives. They also illustrate how partners may work together to find a metadata reporting threshold that encourages participation while maintaining high data integrity. And lastly, potential governance is proposed that may assist smaller partners with short- and long-term participation in the OWDI.

Journal of the American Water Resources Associatio↗
USGS2020

Using remote sensing products to predict recovery of vegetation across space and time following energy development

Using localized studies to understand how ecosystems recover can create uncertainty in recovery predictions across landscapes. Large archives of remote sensing data offer opportunities for quantifying the spatial and temporal factors influencing recovery at broad scales and predicting recovery. For example, energy production is a widespread and expanding land use among many semi-arid ecosystems of the Western United States dominated by sagebrush ( Artemisia spp.), a keystone species providing a variety of ecological services. With remotely-sensed (Landsat) estimates of vegetation cover collected every 2–5 years from southwestern Wyoming, USA, over nearly three decades (1985–2015), we modeled changes in sagebrush cover on 375 former oil and gas well pads in response to weather and site-level conditions. We then used modeled relationships to predict recovery time across the landscape as an indicator of resilience for vegetation after well pad disturbances, where faster recovery indicates a greater capacity to recover when similarly disturbed. We found the rate of change in sagebrush cover generally increased with moisture and temperature, particularly at higher elevations. Rate of change in sagebrush cover also increased and decreased with greater percent sand and larger well pads, respectively. We predicted 21% of the landscape would recover to pre-disturbance conditions within 60 years, whereas other areas may require >100 years for recovery. These predictions and maps could inform future restoration efforts as they reflect resilience. This approach also is applicable to other disturbance types (e.g., fires and vegetation removal treatments) across landscapes, which can further improve conservation efforts by characterizing past conditions and monitoring trends in subsequent years.

Wyoming↗
USGS2010

Empirical models of wind conditions on Upper Klamath Lake, Oregon

Upper Klamath Lake is a large (230 square kilometers), shallow (mean depth 2.8 meters at full pool) lake in southern Oregon. Lake circulation patterns are driven largely by wind, and the resulting currents affect the water quality and ecology of the lake. To support hydrodynamic modeling of the lake and statistical investigations of the relation between wind and lake water-quality measurements, the U.S. Geological Survey has monitored wind conditions along the lakeshore and at floating raft sites in the middle of the lake since 2005. In order to make the existing wind archive more useful, this report summarizes the development of empirical wind models that serve two purposes: (1) to fill short (on the order of hours or days) wind data gaps at raft sites in the middle of the lake, and (2) to reconstruct, on a daily basis, over periods of months to years, historical wind conditions at U.S. Geological Survey sites prior to 2005. Empirical wind models based on Artificial Neural Network (ANN) and Multivariate-Adaptive Regressive Splines (MARS) algorithms were compared. ANNs were better suited to simulating the 10-minute wind data that are the dependent variables of the gap-filling models, but the simpler MARS algorithm may be adequate to accurately simulate the daily wind data that are the dependent variables of the historical wind models. To further test the accuracy of the gap-filling models, the resulting simulated winds were used to force the hydrodynamic model of the lake, and the resulting simulated currents were compared to measurements from an acoustic Doppler current profiler. The error statistics indicated that the simulation of currents was degraded as compared to when the model was forced with observed winds, but probably is adequate for short gaps in the data of a few days or less. Transport seems to be less affected by the use of the simulated winds in place of observed winds. The simulated tracer concentration was similar between model results when simulated winds were used to force the model, and when observed winds were used to force the model, and differences between the two results did not accumulate over time.

Scientific Investigations Report↗
USGS2020

Evaluation of the Washington State Department of Transportation stormwater monitoring and effectiveness program for 2014–19

The U.S. Geological Survey was asked by the Washington State Department of Transportation to provide technical assistance as a third-party reviewer of their stormwater effectiveness monitoring program during the transition between the completion of the 2014 Washington State Department of Ecology permit requirements and start of the new 2019 Washington State Department of Ecology permit requirements. For the purposes of this evaluation, the U.S. Geological Survey reviewed Washington State Department of Transportation’s 2014 National Pollution Discharge Elimination System permit. This review focuses on sections S7, S8, G9, and appendix 4 of the permit that are specific to monitoring. These sections cover the methods of monitoring, the constituents that were monitored, laboratory requirements, reporting requirements, and data archival. Next, all quality-assurance project plans for the 2014 general permit and annual reports required for the permit were reviewed. The quality-assurance project plans and annual reports were reviewed to ensure that monitoring was executed and reported as required by the 2014 general permit. The monitoring requirements put forth from the permits were fully addressed in quality-assurance project plans and were completed and presented in the annual monitoring reports. Overall, the Washington State Department of Transportation monitoring program does not change much under its new 2019 permit. The Washington State Department of Transportation has followed through with the plan set out in each of its approved quality-assurance project plans and therefore, is in a good position to meet or exceed the new permit requirements in the upcoming 5-year permit cycle.

Open-File Report↗
USGS1983

Breeding success of barn owls (Tyto alba) fed low levels of DDE and dieldrin

The relative importance of two organochlorine pesticides in the recent reproductive failure of raptors was investigated. Captive barn owls were fed 3.0 ppm DDE and 0.5 ppm dieldrin; doses were given separately and in combination for two years. Breeding success was followed from the laying of eggs through natural incubation and rearing of young. DDE was associated with significant eggshell thinning, egg breakage, embryo mortality, and reduced production per pair. Dieldrin alone was associated with slight but significant eggshell thinning, but not with reduction of breeding success. Ecological implications of the results are discussed; it is suggested that DDE had a much more severe effect on reproduction in wild raptors than dieldrin, which contributed to their decline primarily through adult mortality.

Archives of Environmental Contamination and Toxico↗
USGS2015

Effects of age, colony, and sex on mercury concentrations in California sea lions

We measured total mercury (THg) concentrations in California sea lions ( Zalophus californianus ) and examined how concentrations varied with age class, colony, and sex. Because Hg exposure is primarily via diet, we used nitrogen ( δ 15 N) and carbon ( δ 13 C) stable isotopes to determine if intraspecific differences in THg concentrations could be explained by feeding ecology. Blood and hair were collected from 21 adult females and 57 juveniles from three colonies in central and southern California (San Nicolas, San Miguel, and Año Nuevo Islands). Total Hg concentrations ranged from 0.01 to 0.31 μg g −1 wet weight (ww) in blood and 0.74 to 21.00 μg g −1 dry weight (dw) in hair. Adult females had greater mean THg concentrations than juveniles in blood (0.15 vs. 0.03 μg −1 ww) and hair (10.10 vs. 3.25 μg −1 dw). Age class differences in THg concentrations did not appear to be driven by trophic level or habitat type because there were no differences in δ 15 N or δ 13 C values between adults and juveniles. Total Hg concentrations in adult females were 54 % (blood) and 24 % (hair) greater in females from San Miguel than females from San Nicolas Island, which may have been because sea lions from the two islands foraged in different areas. For juveniles, we detected some differences in THg concentrations with colony and sex, although these were likely due to sampling effects and not ecological differences. Overall, THg concentrations in California sea lions were within the range documented for other marine mammals and were generally below toxicity benchmarks for fish-eating wildlife.

Archives of Environmental Contamination and Toxico↗
USGS2010

Visible and infrared remote imaging of hazardous waste: A review

One of the critical global environmental problems is human and ecological exposure to hazardous wastes from agricultural, industrial, military and mining activities. These wastes often include heavy metals, hydrocarbons and other organic chemicals. Traditional field and laboratory detection and monitoring of these wastes are generally expensive and time consuming. The synoptic perspective of overhead remote imaging can be very useful for the detection and remediation of hazardous wastes. Aerial photography has a long and effective record in waste site evaluations. Aerial photographic archives allow temporal evaluation and change detection by visual interpretation. Multispectral aircraft and satellite systems have been successfully employed in both spectral and morphological analysis of hazardous wastes on the landscape and emerging hyperspectral sensors have permitted determination of the specific contaminants by processing strategies using the tens or hundreds of acquired wavelengths in the solar reflected and/or thermal infrared parts of the electromagnetic spectrum. This paper reviews the literature of remote sensing and overhead imaging in the context of hazardous waste and discusses future monitoring needs and emerging scientific research areas.

Remote Sensing↗
USGS2022

Population dynamics of Yellowstone Cutthroat Trout in Henrys Lake, Idaho

Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri is a species with significant ecological and recreational value. In many YCT fisheries, managers are tasked with balancing angler expectations and fish conservation. Henrys Lake supports a popular trophy trout fishery, but the increase of nonnative Utah Chub Gila atraria has caused concern for YCT. We summarized long-term trends in abundance, length structure, body condition, and growth of YCT to evaluate the effect of Utah Chub. Additionally, we investigated abiotic and biotic factors influencing YCT. We examined archived hard structures to provide a comprehensive evaluation of changes in age and growth of YCT in the system. We used stocking records and catch rates of Utah Chub and trout in Henrys Lake as covariates to explain changes in YCT catch rates and growth. Catch rates varied from 1.5 to 15.4 YCT per net night during the 2002 to 2020 sampling period, but we did not identify consistent patterns. Length structure was consistently dominated by stock- to quality-length fish, and we captured few fish >600 mm in total length. Relative weight of YCT was decreased from a mean ± standard deviation (SD) of 115.9 ± 16.5 in 2004 to 93.2 ± 8.2 in 2020. The age of YCT varied between 1 and 11 years; fish that we captured during 2010 to 2020 were the oldest. The majority of fish that we sampled were age 4 and younger. Total annual mortality of age-2 and older YCT was higher than other Cutthroat Trout populations (i.e., 0.70 during 2002 to 2010 and 0.60 during 2011 to 2020). Based on regression models, we identified positive relationships between catch rates of YCT, Brook Trout Salvelinus fontinalis, and Rainbow Trout Oncorhynchus mykiss × YCT hybrid trout. We observed negative relationships between growth of YCT and abundance of Utah Chub and Brook Trout. Although we identified negative relationships, YCT growth in recent decades is as fast as or faster than earlier time periods. Results from this research suggest that major changes in YCT population dynamics are not evident over the last 20 years. This study provides insight into the factors influencing an adfluvial trout population. In particular, results from this research may be useful for managers of systems where Utah Chub have been introduced.

Idaho↗
USGS2006

Reassessing a troublesome fact of mountain life: Avalanches in Glacier National Park

For the past decade, our U.S. Geological Survey (USGS) research team has rummaged through Glacier National Park’s archives looking for records of snow avalanches. Our searches have paid off. We have found photographs that show snow avalanches blocking progress during the annual spring opening of the famed Going-to-the-Sun Road, ranger logs that describe cabins and telephone lines destroyed by avalanches, and superintendents’ reports that recount avalanche accidents that killed employees or visitors. Recently, we have combined these historical sources with field studies to investigate whether snow avalanches in the park may be more cyclical than random and as much an ecological process as a natural hazard. Our ongoing research in Montana has yielded relevant information for park managers elsewhere who deal with avalanche threats to park infrastructure and for ecologists seeking a better understanding of how mountain ecosystems function. Our research has focused on two transportation corridors: the Going-to-the-Sun Road that bisects the center of the park, and John F. Stevens Canyon, at the park’s southwest corner ( fig. 1 ). The Going-to-the-Sun Road is the park’s most visited attraction; deep snow and avalanches force the road’s closure each winter, and in spring, park crews dig it out using bulldozers and other heavy equipment ( fig. 2 ). Springtime avalanches can bury workers or push equipment off the road and over cliffs ( figs. 3a and 3b ), as happened in 1953, when two workers died. Our research started with a study of how interannual variations in snowfall and avalanches affect the road opening. The initial study helped park managers predict and plan for the road opening in spring and respond to the many topical questions from park visitors and locals. More recent studies have focused on determining the conditions that create springtime avalanches, which are a poorly understood aspect of the avalanche phenomenon.

Wyoming↗
USGS2016

The bee microbiome: Impact on bee health and model for evolution and ecology of host-microbe interactions

As pollinators, bees are cornerstones for terrestrial ecosystem stability and key components in agricultural productivity. All animals, including bees, are associated with a diverse community of microbes, commonly referred to as the microbiome. The bee microbiome is likely to be a crucial factor affecting host health. However, with the exception of a few pathogens, the impacts of most members of the bee microbiome on host health are poorly understood. Further, the evolutionary and ecological forces that shape and change the microbiome are unclear. Here, we discuss recent progress in our understanding of the bee microbiome, and we present challenges associated with its investigation. We conclude that global coordination of research efforts is needed to fully understand the complex and highly dynamic nature of the interplay between the bee microbiome, its host, and the environment. High-throughput sequencing technologies are ideal for exploring complex biological systems, including host-microbe interactions. To maximize their value and to improve assessment of the factors affecting bee health, sequence data should be archived, curated, and analyzed in ways that promote the synthesis of different studies. To this end, the BeeBiome consortium aims to develop an online database which would provide reference sequences, archive metadata, and host analytical resources. The goal would be to support applied and fundamental research on bees and their associated microbes and to provide a collaborative framework for sharing primary data from different research programs, thus furthering our understanding of the bee microbiome and its impact on pollinator health.

mBio↗
USGS2022

Evidence of a dietary shift by the Florida manatee (Trichechus manatus latirostris) in the Indian River Lagoon inferred from stomach content analyses

Investigating the long-term fluctuations of the feeding ecology of megaherbivores such as sirenians is important, as any changes could be indicative of shifts in resource availability. The Indian River Lagoon (IRL), eastern Florida, USA, is a critical habitat for the Florida manatee ( Trichechus manatus latirostris ). However, the IRL has experienced a substantial decline in seagrass due to the persistence of several harmful algal blooms. Using microhistological analysis, we examined the diet of manatees over a discontinuous sampling period spanning over 38 years using stomach contents collected from carcasses recovered in the IRL. Samples collected between 2013–2015 (post-seagrass die-off, n = 90) were compared to archived stomach samples collected between 1977–1989 (pre-seagrass die-off, n = 103). Samples analyzed from 1977–1989 contained primarily seagrasses (61.7%), followed by algae (28.4%) and vascular plants (1.7%). In contrast, stomach samples from the post-seagrass die-off primarily contained algae (49.5%), followed by seagrasses (34%) and vascular plants (2.7%). Between 1977–1989 and 2013–2015, manatees in the IRL experienced a 44.9% decline in seagrass consumption, and a 74.3% increase in algal consumption. This dietary shift was not influenced by body length, a proxy of age, or sex. Our results indicate that the dietary shift experienced by manatees is due to the decline of available seagrass forage in the IRL, and highlight the dietary plasticity of manatees in the face of changes in resource availability. However, the individual health and population-level consequences of this dietary shift are unknown. An increase in mortality due to undetermined causes in this region since 2012 can be associated with deteriorating body conditions of manatees in the IRL, possibly resulting from a lack of seagrass diet. Future research should further investigate behavioral changes affecting manatees in relation to seagrass decline in the IRL, including the energetic costs of this dietary change.

Florida↗