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Soil microbial community profiles and functional diversity in limestone cedar glades
Rock outcrop ecosystems, such as limestone cedar glades (LCGs), are known for their rare and endemic plant species adapted to high levels of abiotic stress. Soils in LCGs are thin (< 25 cm), soil-moisture conditions fluctuate seasonally between xeric and saturated, and summer soil temperatures commonly exceed 48 °C. The effects of these stressors on soil microbial communities (SMC) remain largely unstudied, despite the importance of SMC-plant interactions in regulating the structure and function of terrestrial ecosystems. SMC profiles and functional diversity were characterized in LCGs using community level physiological profiling (CLPP) and plate-dilution frequency assays (PDFA). Most-probable number (MPN) estimates and microbial substrate-utilization diversity (H) were positively related to soil thickness, soil organic matter (OM), soil water content, and vegetation density, and were diminished in alkaline soil relative to circumneutral soil. Soil nitrate showed no relationship to SMCs, suggesting lack of N-limitation. Canonical correlation analysis indicated strong correlations between microbial CLPP patterns and several physical and chemical properties of soil, primarily temperature at the ground surface and at 4-cm depth, and secondarily soil-water content, enabling differentiation by season. Thus, it was demonstrated that several well-described abiotic determinants of plant community structure in this ecosystem are also reflected in SMC profiles.
Sediment deposition and sources into a Mississippi River floodplain lake; Catahoula Lake, Louisiana
Floodplain lakes are important wetlands on many lowland floodplains of the world but depressional floodplain lakes are rare in the Mississippi River Alluvial Valley. One of the largest is Catahoula Lake, which has existed with seasonally fluctuating water levels for several thousand years but is now in an increasingly hydrologically altered floodplain. Woody vegetation has been encroaching into the lake bed and the rate of this expansion has increased since major human hydrologic modifications, such as channelization, levee construction, and dredging for improvement of navigation, but it remains unknown what role those modifications may have played in altering lake sedimentation processes. Profiles of thirteen 137 Cs sediment cores indicate sedimentation has been about 0.26 cm y − 1 over the past 60 years and has been near this rate since land use changes began about 200 years ago ( 210 Pb, and 14 C in Tedford, 2009). Carbon sequestration was low (10.4 g m − 2 y − 1 ), likely because annual drying promotes mineralization and export. Elemental composition (high Zr and Ti and low Ca and K) and low pH of recent (<~60 y) or surface sediments suggest Gulf Coastal Plain origin, but below the recent sediment deposits, 51% of sediment profiles showed influence of Mississippi River alluvium, rich in base cations such as K + , Ca 2 + , and Mg 2 + . The recent shift to dominance of Coastal Plain sediments on the lake-bed surface suggests hydrologic modification has disconnected the lake from sediment-bearing flows from the Mississippi River. Compared to its condition prior to hydrologic alterations that intensified in the 1930s, Catahoula Lake is about 15 cm shallower and surficial sediments are more acidic. Although these results are not sufficient to attribute ecological changes directly to sedimentological changes, it is likely the altered sedimentary and hydrologic environment is contributing to the increased dominance of woody vegetation.
Pedogenic evolution on the arid Bishop Creek moraines, eastern Sierra Nevada, California
Soil chronosequences on alpine moraine complexes have been used to help unravel the glacial histories of the eastern Sierra Nevada. The moraine sequence along Bishop Creek includes well-preserved moraines that have been previously dated using cosmogenic 36 Cl surface exposure ages. The goal of this study was to interpret pedogenesis within a soil geomorphic context on these quantitatively dated moraines. Soil development, surface clast cover, and moraine morphology were studied on seven of the moraines, ranging in age from 15 to 170 ka. Older moraines had gentler slopes, broader crests, and decreased surface rock cover. Soils showed weak development across the chronosequence of moraines. Pedogenesis involved slight increases in clay, the formation of clay lamellae, development of a vesicular horizon in a surface layer of aeolian dust, and weathering of surface and subsurface granitic clasts. Soil reddening and structure development were minimal. Soil formation was likely inhibited by the arid to semi-arid climate and intermittent wind and water erosion during the time span of the chronosequence.
Ecological effects of establishing a 40-year oasis protection system in a Northwestern China Desert
Aims: Desertification around oasis areas is a serious problem in semi-arid and arid regions, which is expected to continue into the future due to a rapidly increasing human population. Oasis protection systems are created to reverse desertification by recovering degraded soil and vegetation properties and improving ecosystem services. Most research has focused on the short-term effects of a single restoration practice using an individual vegetation or soil metric, while more complete assessments along a gradient of an entire oasis protection system have seldom been studied. In this study, soil and vegetation properties were measured along a 40-year oasis-protection system to assess the effectiveness of increasing land protection belts along a gradient from prohibiting grazing, to fencing shrubland, to establishing shrub- and tree-plantations in northwestern China. Methods: Three sites in each belt of the oasis-protection system were selected to measure soil texture, soil organic carbon, total nitrogen, total phosphorus, pH, electrical conductivity, and eight ions under the plant canopy and in the inter-canopy area, as well as to investigate plant community composition, diversity and productivity. Wind velocity and sand transportation rates were measured in each of the five belts during storm events. Results: Compared with shifting dunes in unprotected desert settings, the wind velocity and sand transportation rate decreased by 75 and 98%, respectively, when spring storms passed through the most protected plantation belts in the oasis system. Soil organic carbon, total nitrogen, total phosphorus significantly increased, along with the silt and clay contents, across the protection gradient, and reached their highest levels at the shrub- and tree-plantation belts. Similarly, the density, cover, and biomass of herbaceous plants also increased along the gradient. Despite these positive effects, there was a significant increase in soil salinity, sodicity, and desiccation at the shrub- and tree-plantation belts, which may negatively affect the future sustainability of the oasis-protection system under a predicted future drier and warming climate. Conclusions Although shrub and tree plantations improve soil fertility and favor the development of the herbaceous plant community, their environmental consequences (i.e., soil salinization and desiccation) need to be evaluated in the context of ecosystem restoration over the long-term, especially in arid regions.
Fingerprinting historical tributary contributions to floodplain sediment using bulk geochemistry
Sediment deposition on floodplains is essential for the development and maintenance of riparian ecosystems. Upstream erosion is known to influence downstream floodplain construction, but linking these disparate processes is challenging, especially over large spatial and temporal scales. Sediment fingerprinting is thus a robust tool to establish process linkages between downstream floodplain development and sediment production in distal headwater basins. Here we use sediment geochemistry to connect historical erosion in several tributaries of the Yampa River in Colorado and Wyoming, USA, to the construction of downstream floodplains on which extensive cottonwood forests established. Using a combination of conventional techniques and the relatively novel machine-learning random forest algorithm, we build multiple fingerprints of diagnostic geochemical tracers that are then input into a Bayesian mixing model to apportion provenance of floodplain sediment. Sediment samples for provenance analysis were collected from an excavated floodplain in Deerlodge Park on the Yampa River at the rooting surface of the surrounding cottonwood forest and dominantly comprised of very fine (4Φ) sand. Fingerprinting analysis of the 4Φ fraction of collected floodplain sink (n = 38) and tributary source (n = 218) samples revealed floodplain sediment to be dominantly sourced from the tributaries of Muddy Creek (45 ± 4%) and Sand Wash (42 ± 6%). Dendrochronology results moreover indicate the Deerlodge floodplain sediment was deposited in ∼1912, which falls squarely within the time (1880–1940) these tributaries were actively eroding. Taken together, study results indicate a demonstrable link between historical tributary erosion and downstream floodplain construction and concomitant forest establishment. Our findings suggest processes operating in tributary watersheds play an important role in the dynamics of large rivers and emphasize both the need for holistic, collaborative management of sediment as an essential resource and the potential to utilize sediment fingerprinting to inform and direct river ecosystem management.
Characterization of vegetated and ponded wetlands with implications towards coastal wetland marsh collapse
Coastal wetlands provide numerous ecosystem services; yet these ecosystems are increasingly vulnerable to climate change stressors, especially excessive flooding from sea-level rise and storm events. This study highlights the important contribution of vegetation belowground biomass to marsh stability and identifies loss of vegetation as a critical driver of marsh collapse. We investigated the shear strength of salt marshes and unvegetated interior ponds using a modified cone penetrometer along a chronosequence of wetland marsh collapse (0 to 21 + years following pond formation) to characterize changes in the structural integrity of the marsh soil. Following conversion from vegetated marsh to open water pond, the surficial soils experienced a dramatic loss in shear strength resulting from the loss of vegetation and compaction of soil pore space. The Cone Penetrometer Testing (CPT) data indicate that higher shear strength in the surficial layers of the vegetated marsh sites were never recovered, up to 21 + years following marsh collapse. Coupled with significant elevation loss from marsh collapse, additional sea-level rise, deep subsidence, and reduced sedimentation may contribute to conditions that can exceed critical flooding thresholds, making recovery from marsh collapse difficult or impossible. Therefore, characterizing mechanisms and thresholds of marsh collapse are critical for identifying those coastal marshes that are vulnerable to collapse before conversion from vegetated marsh to open water occurs.
Changes in microbial community and network structure precede shrub degradation in a desert ecosystem
Large-scale restoration is intended to promote ecological recovery. Improvements in plant and microbial conditions, however, may slow or even reverse in late succession. To better understand long-term restoration outcomes and underlying drivers of successional pathways, we tracked plant, bacterial and fungal, and soil conditions across a 40-year shrub plantation that was intended to stabilize desertified land in northern China. We found that planted Haloxylon ammodendron shrubs developed and then subsequently became degraded after 30–40 years. Bacterial abundance and α-diversity were much higher than those of fungi, but no significant differences in composition and structure were found in different plantation ages. In contrast, the dominant taxa of fungal communities shifted from symbiotroph and saprotroph species towards pathotroph species with increased soil nutrients in the plantation chronosequence after two decades. The changes in fungal dominant species led to a transition in microbial network structure and function, with an increase in negative linkages among taxa that began in the middle stages of succession. Changes in fungal community structure had direct and indirect negative effects on shrub leaf physiology, root activity, and biomass. Our results highlight the preceding role of a breakdown in soil microbial community composition and network structure on the degradation of shrub performance in long-term desert succession. Our study emphasizes the importance of understanding soil-microbial-plant linkages on restoration outcomes, and mechanisms that can slow or reverse the recovery of ecosystems.
Field soil aggregate stability kit for soil quality and rangeland health evaluations
Soil aggregate stability is widely recognized as a key indicator of soil quality and rangeland health. However, few standard methods exist for quantifying soil stability in the field. A stability kit is described which can be inexpensively and easily assembled with minimal tools. It permits up to 18 samples to be evaluated in less than 10 min and eliminates the need for transportation, minimizing damage to soil structure. The kit consists of two 21×10.5×3.5 cm plastic boxes divided into eighteen 3.5×3.5 cm sections, eighteen 2.5-cm diameter sieves with 1.5-mm distance openings and a small spatula used for soil sampling. Soil samples are rated on a scale from one to six based on a combination of ocular observations of slaking during the first 5 min following immersion in distilled water, and the percent remaining on a 1.5-mm sieve after five dipping cycles at the end of the 5-min period. A laboratory comparison yielded a correlation between the stability class and percent aggregate stability based on oven dry weight remaining after treatment using a mechanical sieve. We have applied the method in a wide variety of agricultural and natural ecosystems throughout western North America, including northern Mexico, and have found that it is highly sensitive to differences in management and plant community composition. Although the field kit cannot replace the careful laboratory-based measurements of soil aggregate stability, it can clearly provide valuable information when these more intensive procedures are not possible.
Characteristics of sediment discharge in the subarctic Yukon River, Alaska
The characteristics of sediment discharge in the Yukon River, Alaska were investigated by monitoring water discharge, water turbidity and water temperature. The river-transported sediment, 90 wt.% or more, consists of silt and clay (grain size ??? 62.5 ??m), which probably originated in the glacier-covered mountains mostly in the Alaska Range. For early June to late August 1999, we continuously measured water turbidity and temperature near the estuary and in the middle of Yukon River by using self-recording turbidimeters and temperature data loggers. The water turbidity (ppm) was converted to suspended sediment concentration (SSC; mg/l) of river water, using a relation between simultaneous turbidity and SSC at each of the two sites, and then, the suspended sediment discharge, approximately equal to water discharge times SSC, was numerically obtained every 1 or 2 h. It should be noted that the sediment discharge in the Yukon River is controlled by SSC rather than water discharge. As a result, a peak sediment discharge occurred in mid or late August by local sediment runoffs due to glacier-melt (or glacier-melt plus rainfall), while a peak water discharge was produced by snowmelt in late June or early July. Application of the "extended Shields diagram" indicates that almost all the river-transported sediments are under complete suspension. ?? 2002 Elsevier Science B.V. All rights reserved.
Quantifying vegetation and nekton response to tidal restoration of a New England salt marsh
Tidal flow to salt marshes throughout the northeastern United States is often restricted by roads, dikes, impoundments, and inadequately sized culverts or bridge openings, resulting in altered ecological structure and function. In this study we evaluated the response of vegetation and nekton (fishes and decapod crustaceans) to restoration of full tidal flow to a portion of the Sachuest Point salt marsh, Middletown, Rhode Island. A before, after, control, impact study design was used, including evaluations of the tide-restricted marsh, the same marsh after reintroduction of tidal flow (i.e., tide-restored marsh), and an unrestricted control marsh. Before tidal restoration vegetation of the 3.7-ha tide-restricted marsh was dominated by Phragmites australis and was significantly different from the adjacent 6.3-ha Spartina -dominated unrestricted control marsh (analysis of similarities randomization test, p < 0.001). After one growing season vegetation of the tide-restored marsh had changed from its pre-restoration condition (analysis of similarities randomization test, p < 0.005). Although not similar to the unrestricted control marsh, Spartina patens and S. alterniflora abundance increased and abundance and height of Phragmites significantly declined, suggesting a convergence toward typical New England salt marsh vegetation. Before restoration shallow water habitat (creeks and pools) of the unrestricted control marsh supported a greater density of nekton compared with the tide-restricted marsh (analysis of variance, p < 0.001), but after one season of restored tidal flow nekton density was equivalent. A similar trend was documented for nekton species richness. Nekton density and species richness from marsh surface samples were similar between the tide-restored marsh and unrestricted control marsh. Fundulus heteroclitus and Palaemonetes pugio were the numerically dominant fish and decapod species in all sampled habitats. This study provides an example of a quantitative approach for assessing the response of vegetation and nekton to tidal restoration.
Metabolism of reduced methylated sulfur compounds in anaerobic sediments and by a pure culture of an estuarine methanogen
Addition of dimethylsulfide (DMS), dimethyldisulfide (DMDS), or methane thiol (MSH) to a diversity of anoxic aquatic sediments (e.g., fresh water, estuarine, alkaline/hypersaline) stimulated methane production. The yield of methane recovered from DMS was often 52 to 63%, although high concentrations of DMS (as well as MSH and DMDS) inhibited methanogenesis in some types of sediments. Production of methane from these reduced methylated sulfur compounds was blocked by 2-bromoethanesulfonic acid. Sulfate did not influence the metabolism of millimolar levels of DMS, DMDS, or MSH added to sediments. However, when DMS was added at ∼2-μM levels as [ 14 C]DMS, metabolism by sediments resulted in a 14 CH 4 / 14 CO 2 ratio of only 0.06. Addition of molybdate increased the ratio to 1.8, while 2-bromoethanesulfonic acid decreased it to 0, but did not block 14 CO 2 production. These results indicate the methanogens and sulfate reducers compete for DMS when it is present at low concentrations; however, at high concentrations, DMS is a “noncompetitive” substrate for methanogens. Metabolism of DMS by sediments resulted in the appearance of MSH as a transient intermediate. A pure culture of an obligately methylotrophic estuarine methanogen was isolated which was capable of growth on DMS. Metabolism of DMS by the culture also resulted in the transient appearance of MSH, but the organism could grow on neither MSH nor DMDS. The culture metabolized [ 14 C]-DMS to yield a 14 CH 4 / 14 CO 2 ratio of ∼2.8. Reduced methylated sulfur compounds represent a new class of substrates for methanogens and may be potential precursors of methane in a variety of aquatic habitats.