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At least 55 records · Page 3Linked to original sources
USGS2019

Monitoring breeding and survival of ring-necked pheasant (Phasianus colchicus) in the Sacramento Valley, Sacramento-San Joaquin River Delta, and Klamath Basin, northern California—Five-year summary, 2013–17

The U.S. Geological Survey Western Ecological Research Center, Pheasants Forever, Mandeville Island Duck Club, and the California Department of Fish and Wildlife collaborated in a reconnaissance study to monitor populations of ring-necked pheasant ( Phasianus colchicus ) using radio-telemetry in the Sacramento Valley, Sacramento-San Joaquin River Delta, and Klamath Basin of northern California. The purpose of this study was to provide agencies and private landowners with a framework of decision-support tools to help manage pheasant populations in California. During winter, spring, and autumn of 2013–17, we radio- or Global Positioning System-marked 227 female pheasant across six study sites. Data collection was focused on investigating nest-site and brood-rearing habitat selection, examining avian predator composition, and estimating population vital rates to improve our understanding of pheasant population dynamics and to identify factors that may contribute to decreases in pheasant populations in California. The cumulative annual adult survival probability across all sites during 2013–17 was 27.6 percent (95-percent confidence interval [CI], 21.9–33.6), and the cumulative nest and brood survival probabilities were 34.5 percent (95-percent CI, 27.0–42.2) and 54.2 percent (95-percent CI, 43.7–63.5), respectively. Evidence from microhabitat surveys completed at nest-sites, brood locations, and random locations suggested that marked female pheasant tended to select increasing vertical cover and residual vegetation cover and tended to avoid areas of increasing bare ground cover regardless of life-history stage. However, females at nest-sites selected increasing grass cover and height, whereas brood-rearing females tended to select increasing forb cover and height. Only perennial grass cover and perennial grass height were shown to have a positive influence on nest survival, which suggests that increasing perennial grass cover in areas occupied by pheasant may increase nest survival. Analysis of environmental factors linked to vital rate information are ongoing and will continue with investigations at increased spatial scales (that is, macro-habitat) to develop integrated population models that can incorporate abundance estimates from crow count data with vital rates from telemetry data. This report includes results from 5 years of data collection and should be interpreted with caution, as these findings are preliminary.

California↗
USGS2020

Population and habitat analyses for greater sage-grouse (Centrocercus urophasianus) in the bi-state distinct population segment—2018 update

Executive Summary The Bi-State Distinct Population Segment (Bi-State DPS) of greater sage-grouse ( Centrocercus urophasianus , hereinafter “sage-grouse”) represents a genetically distinct and geographically isolated population that straddles the border between Nevada and California. The primary threat to these sage-grouse populations is the expansion of single-leaf pinyon ( Pinus monophylla ) and Utah juniper ( Juniperus osteosperma ) into sagebrush ecosystems, which fragments and reduces population connectivity and survival. Other important threats include low water availability during brood-rearing, particularly during drought, and increased predation by common ravens ( Corvus corax ), a generalist predator often associated with anthropogenic resource subsidies. Although the Bi-State DPS occurs at high elevations relative to sage-grouse range-wide, changes in historical wildfire cycles and the conversion of native shrubs to invasive annual grasslands still threaten these populations. The Bi-State DPS has undergone multiple federal status assessments and associated litigation. For example, in October of 2013, the Bi-State DPS was proposed for listing as threatened under the Endangered Species Act of 1973 by the U.S. Fish and Wildlife Service (USFWS), then withdrawn in April 2015. The withdrawal decision was challenged, and in May 2018, a Federal district court ordered the withdrawal decision to be vacated, and USFWS was required to re-open the October 2013 listing evaluation. In response, the U.S. Geological Survey (USGS), with State and Federal collaborators, embarked on a multipronged analysis to provide current and best available science regarding population status of sage-grouse within the Bi-State DPS. Using data from a long-term monitoring program, we carried out four analytical study objectives, and here, we provide preliminary results of these analyses. First, we used integrated population modeling (IPM) to predict annual population abundance and annual finite rate of population change for the Bi-State DPS, as a whole, and for each subpopulation between 1995 and 2018. Because sage-grouse exhibit population cycles (periodic increases and decreases in abundance across approximately 6- to 10-year wavelengths), we estimated trends across three nested temporal scales that represent one (11 years), two (18 years), and three (24 years) complete population cycles. These estimates of relatively long-term averaged population change account for temporal (that is, interannual) variation. Our model predicted population abundance for the Bi-State DPS during 2018 at 3,305 individuals (2,247–4,683), with the majority occupying Bodie Hills and Long Valley. The model also predicted cyclic dynamics in abundance through time with evidence of 24-year population growth and slight trends of decline over the past 18 years. Specifically, across the Bi-State DPS as a whole, we estimated annual average at 0.99, 0.99, and 1.02 over the one, two, and three population cycles, which equated to a 10.5 percent, 16.6 percent decrease, and 60.0 percent increase in abundance over the 11-, 18-, and 24-year cycles. Estimated abundance in 2018 had not reached numbers lower than those predicted during 1995. However, we found spatial variation in population trends across the three cycles. Bodie Hills subpopulation comprised the greatest (1,521) and exhibited average annual greater than 1.0 across all periods resulting in average annual increases of 7 percent. This relatively large subpopulation has grown 5 times larger than what was predicted in 1995 while experiencing cyclical dynamics within that period. Conversely, other smaller subpopulations within the Bi-State DPS exhibited average annual equal to or less than 1.0 resulting in estimated 10-year risks of extirpation ranging from 2.0 to 76.1 percent. In general, evidence of decline among smaller subpopulations was greatest for the most recent period (2008–18) compared to a period that encompassed three full population cycles (24-year). This difference coincides with an intense period of drought that began in 2012. For comparative purposes as part of this first objective, we conducted a similar analysis for populations of sage-grouse within Nevada and California but outside the Bi-State DPS. We developed a region-wide and distance-weighted IPM using lek count from Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW) databases and with telemetry data collected by USGS across 12 sage-grouse subpopulations. Our models predicted similar patterns in population cycling outside the Bi-State DPS but with much stronger evidence of long-term declines across 24 years. Specifically, median averaged across each year of the 11-, 18-, and 24-year periods resulted in average annual values of 0.94, 0.97, and 0.99, respectively. These values equate to 41.0 percent, 38.5 percent, and 21.3 percent declines over the corresponding periods. Second, we used lek count data in a state-space modeling framework to compare trends in population abundance across different spatial scales (that is, leks versus Bi-State DPS). This hierarchical framework allowed us to disentangle declines associated with climate conditions as opposed to other local level factors that might signal the need for management intervention. Specifically, we identified 7 leks that were both declining and recently decoupled from larger spatial scale trends, typically governed by climatic conditions (referred to as soft or hard signals). The goal of this analysis was to provide an early warning system that might have implications for conservation actions at local scales. Third, we developed phenological (spring, summer–fall, and winter) and reproductive life stage (nesting, early brood-rearing, and late-brood rearing) based resource selection functions using various environmental covariates. We report rankings of variable importance for each season and life stage, developed maps of habitat selection indices (HSI), binned categories representing low, moderate, and high classes of quality (where any category greater than or equal to low indicated selected habitat) for each phenological season and life stage, and produced composite maps by selected phenological and reproductive stage to estimate annual habitat. Fourth, we used for each lek within the Bi-State DPS to carry out a spatial analysis that quantified substantial changes in the distribution of occupied habitat across long- (24-year) and short- (11-year) term periods. Owing to differences among available datasets, the long-term analysis primarily reflected spatial shifts among subpopulations comprising the majority of the Bi-State DPS (that is, Bodie Hills and Long Valley) while the short-term analysis also quantified changes among subpopulations along the periphery. Over long and short-term periods, the overall distribution of occupied habitat (as measured by 99 percent utilization distributions intersecting any quantified habitat) was reduced by 20,573 ha and 55,492 ha, respectively. Occupied core areas (as measured by 50 percent utilization distributions intersecting any quantified habitat) over long-term periods were solely located in Bodie Hills and Long Valley. Although nearly all subpopulations experienced contractions in occupied overall and core distribution, Bodie Hills experienced spatial expansion that occurred with concomitant spatial contraction at Long Valley over both periods. Subpopulations at the northern (Pine Nuts), central (Sagehen) and southern (White-Mountains) extents of the Bi-State DPS also experienced spatial contraction over the short-term period. These findings, coupled with those of population trends, indicate long-term patterns in redistribution of sage-grouse from Long Valley and peripheral subpopulations to Bodie Hills. That is, sage-grouse subpopulations at the periphery are declining while the largest population at the core is increasing, which could have meaningful impacts on overall metapopulation persistence. We provide evidence for loss of occupied habitat (reduced distribution) given local extirpation of subpopulations. Fifth, we calculated percentages of selected phenological, life stage, and annual habitat that each subpopulation contributed to the Bi-State DPS. We then intersected these maps with a composite estimate of occupied habitat from the fourth objective and calculated percentages of selected habitat likely occupied by sage-grouse that each subpopulation contributed to the Bi-State DPS. These values provide evidence for loss of occupied habitat and subsequent reductions in spatial distribution given reductions in abundance and, in some cases, extirpation of leks within subpopulations. Lastly, we carried out an initial in-depth analysis of selection for irrigated pastures and wet meadows during the brood-rearing stage for the Long Valley subpopulation. We chose this subpopulation because it represents a population core, representing 26.5 percent of total sage-grouse within the Bi-State DPS, and has exhibited long-term declines in abundance and distribution. This subpopulation is highly sensitive to precipitation and other factors that influence water availability. Models predicted higher use of the interior portions of irrigated pastures and wet meadows during late brood-rearing period, which represented a potentially risky use of habitat that was exacerbated during periods of low moisture (for example, drought, reduced water delivery, or both). Sage-grouse typically used edges of riparian areas and pastures, largely because the interior of these mesic areas consisted of considerably less overhead concealment cover (for example, shrubs) that likely resulted in a higher risk of mortality. We found that a lack of water delivery to pastures in the form of overwinter precipitation or diversion ditches increased the movements of sage-grouse to the interior of pastures. Although further investigation of water delivery impacts on chick survival are warrented, our initial findings regarding resource selection may explain recent declines in population growth at Long Valley.

California, Nevada↗
USGS2018

Phase 1 studies summary of major findings of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California

Executive Summary The South Bay Salt Pond Restoration Project (Project) is one of the largest restoration efforts in the United States. It is located in South San Francisco Bay of California. It is unique not only for its size—more than 15,000 acres—but also for its location adjacent to one of the nation’s largest urban areas, home to more than 4 million people (Alameda, Santa Clara, and San Mateo Counties). The Project is intended to restore and enhance wetlands in South San Francisco Bay while providing for flood management, wildlife-oriented public access, and recreation. Restoration goals of the project are to provide a mosaic of saltmarsh habitat to benefit marsh species and managed ponds to benefit waterbirds, throughout 3 complexes and 54 former salt ponds. Although much is known about the project area, significant uncertainties remain with a project of this geographic and temporal scale of an estimated 50 years to complete the restoration. For example, in order to convert anywhere from 50 to 90 percent of the existing managed ponds to saltmarsh habitat, conservation managers first enhance the habitat of managed ponds in order to increase use by waterbirds, and provide migratory, wintering, and nesting habitat for more than 90 species of waterbirds. Project managers have concluded that the best way to address these uncertainties is to carefully implement the project in phases and learn from the outcome of each phase. The Adaptive Management Plan (AMP) identifies specific restoration targets for multiple aspects of the Project and defines triggers that would necessitate some type of management action if a particular aspect is trending negatively. U.S. Geological Survey (USGS) biologist Laura Valoppi served as the project Lead Scientist and oversaw implementation of the AMP in coordination with other members of the Project Management Team (PMT), comprised of representatives from the California State Coastal Conservancy, California Department of Fish and Wildlife, the Santa Clara Valley Water District, the U.S. Army Corps of Engineers, and the U.S. Fish and Wildlife Service. To implement the AMP, the PMT have selected and funded applied studies and monitoring projects to address key uncertainties. This information is used by the PMT to make decisions about current management of the project area and future restoration actions in order to meet project. This document summarizes the major scientific findings from studies conducted from 2009 to 2016, as part of the science program that was conducted in conjunction with Phase 1 restoration and management actions. Additionally, this report summarizes the management response to the study results under the guidance of the AMP framework and provides a list of suggested studies to be conducted in “Phase 2–A scorecard summarizing the Project’s progress toward meeting the AMP goals for a range of Project objectives.” The scoring to date indicates that the Project is meeting or exceeding expectations for sediment accretion and western snowy plover ( Charadrius alexandrinus nivosus ) recovery. There is uncertainty with respect to objectives for California gulls ( Larus californicus ), California least tern ( Sternula antillarum ), steelhead trout ( Oncorhynchus mykiss ), and regulatory water quality objectives. Water quality and algal blooms, specifically of the managed ponds, is indicated as trending negative. However, the vast majority of objectives are trending positive, including increased abundance for a number of bird guilds, increasing marsh habitat, maintenance of mudflats, visitor experience, estuarine fish numbers, and special-status marsh species numbers.

California↗
USGS2018

Golden eagle (Aquila chrysaetos) habitat selection as a function of land use and terrain, San Diego County, California

Beginning in 2014, the U.S. Geological Survey, in collaboration with Bloom Biological, Inc., began telemetry research on golden eagles ( Aquila chrysaetos ) captured in the San Diego, Orange, and western Riverside Counties of southern California. This work was supported by the San Diego Association of Governments, California Department of Fish and Wildlife, the U.S. Fish and Wildlife Service, the Bureau of Land Management, and the U.S. Geological Survey. Since 2014, we have tracked more than 40 eagles, although this report focuses only on San Diego County eagles. An important objective of this research is to develop habitat selection models for golden eagles. Here we provide predictions of population-level habitat selection for golden eagles in San Diego County based on environmental covariates related to land use and terrain.

California↗
USGS2020

Shoreline retreat of the Corte Madera marshes, 1853 to 2016, Marin County, California

The greater San Francisco Bay estuary, prior to human intervention, encompassed about 2,200 km 2 of tidal and salt marshes. Over time, these areas became increasingly diked, developed, and altered from their natural state. In addition, natural forces are always driving a continually shifting equilibrium. This study area, the Corte Madera marshes, is a tidal marsh or wetland located in southeastern Marin County, and it borders an embayment of central San Francisco Bay along about 2.8 km of shoreline. Most of this shoreline is located within the Corte Madera Marsh Ecological Reserve, managed by the California Department of Fish and Wildlife. Other areas within the marsh include (1) unincorporated Greenbrae (at the boardwalk), (2) diked land (that is, isolated from tidal action) owned by the Golden Gate Bridge Highway and Transportation District, and (3) urbanized areas such as in the Mariner Cove subdivision of Corte Madera. The present tidal marsh area was historically subdivided into the following informally named tracts, listed from north to south: Heerdt marsh, north Muzzi marsh, inner and outer Muzzi marshes, Marta’s marsh, and Triangle marsh. The purpose of this study is to derive the magnitudes and rates of shoreline change (both erosion and accretion) for the Corte Madera shoreline, with particular emphasis on the time period from 1931 to 2016. The rates of change are then related to different shoreline types (that is, natural or diked) and (or) locations on the shoreline.

California↗
USGS2021

The distribution of anadromy in steelhead / rainbow trout in the Eel River, northwestern California

To inform management and conservation of the species, we investigated the distribution of anadromy and residency of steelhead/rainbow trout ( Oncorhynchus mykiss ) in the Eel River of northwestern California. We determined maternal anadromy versus residency for 106 juvenile O. mykiss using otolith microchemistry. To attempt to relate patterns of anadromy with environmental factors known to influence its distribution in O. mykiss in other places, fish were collected from 52 sites throughout the drainage covering a range of stream size (0.1–7.7 m 3 / s estimated mean annual run-off) and distance from the ocean (23–219 km). Sixty-one of 91 fish sampled below prospective barriers had anadromous mothers, while 1 of 15 fish sampled above barriers had an anadromous mother. We did not detect any influence of stream size or distance from the ocean on the occurrence of anadromy. Fish with resident mothers were found at 21 of 46 sites below barriers. The current broad distribution of fish with resident mothers indicates the importance of maintaining freshwater conditions suitable for resident adults and juveniles age-1 and older, such as preserving dry-season streamflows.

California↗
USGS2021

A tale of two valleys: Endangered species policy and the fate of the giant gartersnake

By the mid-20th Century, giant gartersnakes (Thamnophis gigas) had lost more than 90% of their Central Valley marsh habitat and were extirpated from more than two-thirds of their range. This massive habitat loss led to their inclusion in the inaugural list of rare species under the California Endangered Species Act (CESA). Listing under the CESA provided giant gartersnakes legal protection and mechanisms for recovery, and subsequent listing under the U.S. Endangered Species Act (U.S. ESA) further fortified these protections. But how effective has listing under these endangered species acts (ESAs) been at achieving their goal of giant gartersnake recovery? Herein, we review relevant aspects of giant gartersnake ecology, illustrate how listing has benefitted giant gartersnakes and what challenges have been faced in slowing declines and recovering populations, and chart a course towardprovide options for improved conservation, management, and recovery of giant gartersnakes. Although listing as threatened under both state and federal ESAs has not yet achieved recovery of giant gartersnakes, the increased knowledge gained and mechanisms for protecting giant gartersnake habitat on private and public lands developed over the past 50 years has improved conservation of this endemic California snake.

California↗
USGS2020

Final report: Southwestern Willow Flycatcher (Empidonax traillii extimus) and Western Yellow-billed Cuckoo (Coccyzus americanus occidentalis) surveys and habitat availability modeling on the Santa Clara River, California, 26 March 2020

Our project aimed to conduct population surveys for Southwestern Willow Flycatcher (Empidonax trailii extimus; SWFL) and Yellow-billed Cuckoo (Coccyzus americanus; YBCU) in 2018 and 2019, apply existing habitat models to illustrate and predict past, current, and future habitat suitabilities for these two species, and update and standardize classification and mapping of riparian vegetation to reflect recent conditions along the lower 50 miles of the Santa Clara River. Models developed by Hatten and Paradzick (2003), Hatten, et al. (2010), Hatten (2016), and Johnson et al. (2016) were applied to the SCR to provide California Department of Fish and Wildlife (CDFW) and the U.S. Fish and Wildlife Service (USFWS) with useful tools for management of resources for SWFL and YBCU.

California↗
USGS2018

Fish misidentification and potential implications to monitoring within the San Francisco Estuary, California

Fish monitoring programs often rely on the collection, species identification, and counting of individual fish over time to inform natural resource management decisions. Thus, the utility of the data used to inform these decisions can be negatively affected by species misidentification. Fish species misidentification bias can be minimized by confirming identification using genetic techniques, training observers, or adjusting monitoring data using estimates of incomplete detection and false-positive misidentification. Despite the existence of well-established fish identification training and quality control programs, there is considerable uncertainty about fish species false-positive misidentification rates and the effectiveness of fish identification training programs within the San Francisco Estuary. We evaluated the misidentification of fish species among Delta Juvenile Fish Monitoring Program observers by conducting five fish identification exams under controlled conditions at the Lodi Fish and Wildlife Office in Lodi, California, between 2012 and 2014. To assess the variability in false-positive misidentification, we fitted data to species and observer characteristics using hierarchical logistic regression. We found that fish species misidentification was fairly common, averaging 17% among 155 test specimens and 32 observers. False-positive misidentification varied considerably among species and was negatively related to fish size, the abundance of the species within monitoring samples, and observer experience. In addition, observers who were not formally trained or used as full-time observers were, on average, 6.0 times more likely to falsely identify a species. However, false-positive misidentification rates among observers and specimens still varied considerably after controlling for observer experience and training, and species and size, respectively. Our results could be used to improve fish identification training and testing, increase the accuracy of fish occupancy or abundance estimation, and justify the allocation of resources to continually use and formally train full-time observers within long-term monitoring programs operating in the system.

California↗
USGS1995

Ecology and conservation of the Marbled Murrelet in North America: An overview

Over the past decade, the Marbled Murrelet has become a focus of much controversy. It was listed as threatened in Washington, Oregon, and California by the U.S. Fish and Wildlife Service in February 1993. In order to aid the various agencies with management, the Marbled Murrelet Conservation Assessment was formed to bring together scientists, managers, and others to gather all the available data on this small seabird. This volume of research is the culmination of that effort. In this chapter, we integrate the results of the investigations and summaries on the past history, present status, and possible future of the species, based on the data presented in this volume and other published research. We also propose what we consider the most important research needs. Then, based on the findings of this volume, we suggest actions for management to help ensure the survival of the species.

Book chapter↗
USGS2013

Salton Sea ecosystem monitoring and assessment plan

The Salton Sea, California’s largest lake, provides essential habitat for several fish and wildlife species and is an important cultural and recreational resource. It has no outlet, and dissolved salts contained in the inflows concentrate in the Salton Sea through evaporation. The salinity of the Salton Sea, which is currently nearly one and a half times the salinity of ocean water, has been increasing as a result of evaporative processes and low freshwater inputs. Further reductions in inflows from water conservation, recycling, and transfers will lower the level of the Salton Sea and accelerate the rate of salinity increases, reduce the suitability of fish and wildlife habitat, and affect air quality by exposing lakebed playa that could generate dust. Legislation enacted in 2003 to implement the Quantification Settlement Agreement (QSA) stated the Legislature’s intent for the State of California to undertake the restoration of the Salton Sea ecosystem. As required by the legislation, the California Resources Agency (now California Natural Resources Agency) produced the Salton Sea Ecosystem Restoration Study and final Programmatic Environmental Impact Report (PEIR; California Resources Agency, 2007) with the stated purpose to “develop a preferred alternative by exploring alternative ways to restore important ecological functions of the Salton Sea that have existed for about 100 years.” A decision regarding a preferred alternative currently resides with the California State Legislature (Legislature), which has yet to take action. As part of efforts to identify an ecosystem restoration program for the Salton Sea, and in anticipation of direction from the Legislature, the California Department of Water Resources (DWR), California Department of Fish and Wildlife (CDFW), U.S. Bureau of Reclamation (Reclamation), and U.S. Geological Survey (USGS) established a team to develop a monitoring and assessment plan (MAP). This plan is the product of that effort. The goal of the MAP is to provide a guide for data collection, analysis, management, and reporting to inform management actions for the Salton Sea ecosystem. Monitoring activities are directed at species and habitats that could be affected by or drive future restoration activities. The MAP is not intended to be a prescriptive document. Rather, it is envisioned to be a flexible, program-level guide that articulates high-level goals and objectives, and establishes broad sideboards within which future project-level investigations and studies will be evaluated and authorized. As such, the MAP, by design, does not, for example, include detailed protocols describing how investigations will be implemented. It is anticipated that detailed study proposals will be prepared as part of an implementation plan that will include such things as specific sampling objectives, sampling schemes, and statistical and spatial limits.

California↗
USGS2026

Natomas basin giant gartersnake annual monitoring report 2024

The giant gartersnake ( Thamnophis gigas ) is a semi aquatic snake endemic to the Central Valley of California. After losing 95 percent of its historic wetland habitat (Frayer and others, 1989), giant gartersnakes became state and federally listed as a threatened species (California Fish and Game Commission, 1971; U.S. Fish and Wildlife Service 1993, 1999). Continued monitoring of current populations and implementation of suggested management actions is necessary to recover the species. The Natomas basin in Sacramento, California, supports a population of giant gartersnakes persisting in restored marshes and rice agriculture. This annual report summarizes the giant gartersnake monitoring project for 2024, focusing on the apparent survival, abundance, density, and distribution of the giant gartersnakes and the connectivity of habitat throughout the Natomas basin. In 2024, 131 giant gartersnakes were captured 216 times at 44 sites by hand or trap. The catch-per-unit effort decreased from 2023 to 2024 but was similar to other years of the study. Estimates of occupancy increased between 2023 and 2024, although the trend of occupancy from 2011 through 2024 is still decreasing overall at a mean annual rate of 3 percent per year. Apparent survival was much higher at Betts-Kismat-Silva from 2018 to 2019 and from 2021 to 2022 than in other years, but this may be partly attributed to different sampling efforts over the years. Trapping effort was more consistent in the Sills tract, and apparent survival was slightly higher in later years (2022–23 and 2023–24). Giant gartersnake populations appeared to remain stable in 2024, but abundance, density, survival, and distribution is highly variable across different sites and years of the study. Continued monitoring of the populations would allow for better trend estimates over time and assessment of the effects of management activities. Giant gartersnake populations throughout the basin and on reserve lands would likely benefit from the following: (1) creating more managed marsh; (2) increasing the amount of emergent tule vegetation in existing marshes (for example, Cummings, Natomas Farms, and Lucich South); (3) continuing to flood existing marshes in early spring; (4) maintaining rice agriculture; and (5) continuing research into conservation actions that target the giant gartersnake, such as habitat and water management and translocation.

California↗
USGS1974

The literature of the California black rail

Few birds have remained so little known as the California black rail ( Laterallus jamaicensis coturniculus ). Although first collected in 1859 or before and reported in 1874 (Ridgway 1874), its life history, distribution, and status have remained so obscure that even a sight record of the bird is deemed worthy of a report in some ornithological publications. Because degradation and loss of freshwater and saltwater marshlands in California may be detrimentally affecting the black rail, both the U.S. Bureau of Sport Fisheries and Wildlife (1973) and the California Department of Fish and Game (1972) have classified it as rare and worthy of further study. The 84 papers and notes both summarized in this report and included in its bibliography include essentially all that is currently known about the California black rail. Only 11 of these papers consider the life history of this rail in any detail. The rest are distribution notes and some of the more important papers on the closely related eastern black rail ( L. j. jamaicensis ). The latter are included for comparative purposes, or because they may lend clues to currently unknown facets of the life history of the western race.

Special Scientific Report - Wildlife↗
USGS2010

Channel Maintenance and Flushing Flows for the Klamath River Below Iron Gate Dam, California

The Klamath River is a major river in northern California and southern Oregon. Iron Gate Dam divides the river into the two subunits where there is a significant change in utilization of the river. Downstream of Iron Gate Dam, the river is very important for the propagation of salmon. To address concerns relating to substrate conditions in the mainstem Klamath River below Iron Gate Dam, the Arcata, California, office of the U.S. Fish and Wildlife Service contracted with the U.S. Geological Survey (USGS) to determine flushing flows required to improve and maintain quality spawning and rearing habitats for salmon, and to reduce the abundance of preferred habitats of the polychaete worm suspected of being the intermediate host for Ceratomyxa shasta, a species of bacteria that infects fish. Historically, the river has had the capacity to move sediment just below Iron Gate Reservoir, but there have been periods when the capacity was very low. The results indicate that if the future is more like the pre-1961 period (low transport capacity) than the more recent period, there will be significant sediment issues in the Klamath River below Iron Gate Dam. It seems that during normal or wet years, winter months, and periods of high flow, sediments are flushed either downstream or deposited on higher surfaces. The recent drought conditions during 2000-2005 probably resulted in extensive fine-grained sedimentation along the river, which in turn may have caused increased establishment of aquatic vegetation and increased concentrations of C. shasta. It appears that releases from Iron Gate Dam as far downstream as Seiad Valley are important in maintaining flow conditions to flush the fines and clean the gravels in the river during summer months, or during drought years. Sediment transport studies indicate that supplemental flows during dry or drought conditions may provide some flushing flows in reaches downstream of the dam. For purposes of flushing fine sediments during drought years or dry summer months, flows in the range of 2,500-5,000 cubic feet per second during a period of days may be necessary. Providing these types of flows in a manner similar to a storm pulse would provide the best opportunity to flush the fines and clean some of the gravels given the upper ranges of flows are achieved.

Open-File Report↗
USGS2024

Pacific Lamprey responses to stressors: Dewatering and electrofishing

The Pacific Lamprey Conservation Initiative (PLCI) is a collaboration of Tribes, Federal, and State agencies working together to protect and restore Pacific Lamprey ( Entosphenus tridentatus ) and other native lampreys (i.e., Lampetra spp.) in Alaska, Washington, Oregon, California, and Idaho. The U.S. Fish and Wildlife Service hosts and facilitates the PLCI, and the Columbia River Tribes play a large role in setting conservation goals and defining research needs. The PLCI annually solicits proposals for research and restoration activities, which are reviewed and ranked in collaboration with the Bonneville Power Administration (BPA), who annually provides funding to support PLCI priority proposals. This report summarizes two research projects selected through PLCI, and funded under one BPA contract, in support of Pacific Lamprey conservation. The two projects were not topically related apart from a common theme of potential stressors to lampreys and are being reported together because they were combined under one BPA agreement for contracting.

Report↗
USGS2017

Physical characteristics of the lower San Joaquin River, California, in relation to white sturgeon spawning habitat, 2011–14

The U.S. Fish and Wildlife Service confirmed that white sturgeon ( Acipenser transmontanus ) recently spawned in the lower San Joaquin River, California. Decreases in the San Francisco Bay estuary white sturgeon population have led to an increased effort to understand their migration behavior and habitat preferences. The preferred spawning habitat of other white sturgeon (for example, those in the Columbia and Klamath Rivers) is thought to be areas that have high water velocity, deep pools, and coarse bed material. Coarse bed material (pebbles and cobbles), in particular, is important for the survival of white sturgeon eggs and larvae. Knowledge of the physical characteristics of the lower San Joaquin River can be used to preserve sturgeon spawning habitat and lead to management decisions that could help increase the San Francisco Bay estuary white sturgeon population. Between 2011 and 2014, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, assessed selected reaches and tributaries of the lower river in relation to sturgeon spawning habitat by (1) describing selected spawning reaches in terms of habitat-related physical characteristics (such as water depth and velocity, channel slope, and bed material) of the lower San Joaquin River between its confluences with the Stanislaus and Merced Rivers, (2) describing variations in these physical characteristics during wet and dry years, and (3) identifying potential reasons for these variations. The lower San Joaquin River was divided into five study reaches. Although data were collected from all study reaches, three subreaches where the USFWS collected viable eggs at multiple sites in 2011–12 from Orestimba Creek to Sturgeon Bend were of special interest. Water depth and velocity were measured using two different approaches—channel cross sections and longitudinal profiles—and data were collected using an acoustic Doppler current profiler. During the first year of data collection (water year 2011), runoff was greatest, and gaged streamflow, measured as discharge, peaked at 875 cubic meters per second in the lower San Joaquin River. Also during that year, water velocity was generally between 0.6 and 0.9 meters per second, and depth was typically between 2.5 and 4.5 meters, but water depth exceeded 6 meters in several pools. Water year 2011 was classified as a “ wet ” year. Later water years were classified as either “ dry ” (water year 2012) or “ critical ” (water years 2013 and 2014). During the drier years, water was shallower, and velocities were slower. The streambed aggraded in several areas during the study. At Sturgeon Bend, for example, which had the deepest pool measured in 2011 (maximum depth was 14 meters), about 8 meters of sediment was deposited by 2014. The bed of the lower San Joaquin River was predominately sand, except in areas downstream from the mouth of Del Puerto Creek. A large amount of sand, gravel, and cobble was deposited at the mouth of Del Puerto Creek, and in the 9.5 kilometers downstream from the mouth of Del Puerto Creek, we encountered several gravel bars and patches of gravel-size (8–64 millimeters) bed material. Del Puerto and Orestimba Creeks drain from the Coast Ranges on the west side of the river. Only small quantities of gravel-size bed material were observed in the reach downstream from Orestimba Creek, indicating Orestimba Creek does not deliver much coarse sediment to the lower San Joaquin River. Del Puerto Creek appeared to be the primary source of gravels suitable for white sturgeon spawning in the lower San Joaquin River, and thus, it is important for the long-term spawning success of sturgeon in the San Joaquin River.

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