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At least 523 records · Page 29Linked to original sources

A demonstration of the instream flow incremental methodology, Shenandoah River, Virginia

Current and projected demands on the water resources of the Shenandoah River have increased concerns for the potential effect of these demands on the natural integrity of the Shenandoah River system. The Instream Flow Incremental Method (IFIM) process attempts to integrate concepts of water-supply planning, analytical hydraulic engineering models, and empirically derived habitat versus flow functions to address water-use and instream-flow issues and questions concerning life-stage specific effects on selected species and the general well being of aquatic biological populations. The demonstration project also sets the stage for the identification and compilation of the major instream-flow issues in the Shenandoah River Basin, development of the required multidisciplinary technical team to conduct more detailed studies, and development of basin specific habitat and flow requirements for fish species, species assemblages, and various water uses in the Shenandoah River Basin. This report presents the results of an IFIM demonstration project, conducted on the main stem Shenandoah River in Virginia, during 1996 and 1997, using the Physical Habitat Simulation System (PHABSIM) model. Output from PHABSIM is used to address the general flow requirements for water supply and recreation and habitat for selected life stages of several fish species. The model output is only a small part of the information necessary for effective decision making and management of river resources. The information by itself is usually insufficient for formulation of recommendations regarding instream-flow requirements. Additional information, for example, can be obtained by analysis of habitat time-series data, habitat duration data, and habitat bottlenecks. Alternative-flow analysis and habitat-duration curves are presented.

Virginia↗

Timing and hydrological conditions associated with bigheaded carp movement past navigation dams on the upper Mississippi river

As the range of non-native bigheaded carps ( Hypophthalmichthys spp.) continues to expand throughout river systems of the United States, managers are tasked with preventing or slowing the spread of these invasive species. Main stem navigation dams on the upper Mississippi River, long considered a deterrent to fish migration, may slow or prevent the spread of invasive fish species. As discharge increases, hydraulic head (i.e., difference between upstream elevation and downstream elevation) at these navigation dams decreases, which is believed to allow for easier fish passage. We used acoustic telemetry to investigate the occurrence, frequency, and timing of bigheaded carp passage of upper Mississippi River dams, along with factors related to successful dam passage. During 2013 through 2017, adult silver carp ( H. molitrix ), bighead carp ( H. nobilis ) and their hybrids (N = 358) were tracked throughout the upper Mississippi River. A total of 1078 dam passages by bigheaded carps (N = 158) were observed past 15 dams. Seventy-eight percent of dam passages occurred during April through July. Cox proportional hazards regression models indicated that both upstream and downstream dam passages by these species were strongly affected by hydraulic head height at the dam and water temperature, with dam passages increasing as hydraulic head decreased and water temperature increased. A few dams rarely experience low hydraulic head and passages of those dams by bigheaded carps were rare. This information can be used by managers to develop strategies (e.g., placement of deterrent technologies, targeted removal efforts) to slow the spread of these invasive species.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

MetaIPM: Placing integral projection models into a metapopulation framework

Metapopulation models include spatial population dynamics such as dispersion and migration between subpopulations. Integral projection models (IPMs) can include demographic rates as a function of size. Traditionally, metapopulation models do not included detailed populaiton models such as IPMs. In some situations, both local population dynamics (e.g. size-based survival) and spatial dynamics are important. We present a Python package, MetaIPM , which places IPMs into a metapopulation framework, and allow users to readily construct and apply these models that combine local population dynamics within a metapopulation framework. MetaIPM includes an IPM for each subpopulation that is connected to other subpopulations via a metapopulation movement model. These movements can include dispersion, migration or other patterns. The IPM can include for size-specific demographic rates (e.g. survival, recruitment) as well as management actions, such as length-based harvest (e.g. gear specific capture sizes, varying slot limits across political boundaries). The model also allows for changes in metapopulation connectivity between locations, such as a fish passage ladders to enhance movement or deterrents to reduce movement. Thus, resource managers can use MetaIPM to compare different management actions such as the harvest gear type (which can be length-specific) and harvest locations. We demonstrate how MetaIPM may be applied to inform managers seeking to limit the spread of an invasive species in a system with important metapopulation dynamics. Specifically, we compared removal lengths (all length fish versus longer fish only) for an invasive fish population in a fragmented, inland river system. MetaIPM allowed users to compare the importance of harvesting source populations away from the invasion front, as well as species at the invasion front. The model would also allow for future comparisons of different deterrent placement locations in the system. Moving beyond our example system, we describe how MetaIPM can be applied to other species, systems and management approaches. The MetaIPM packages includes Jupyter Notebooks documenting the package as well as a second set of JupyterNotebooks showing the application of the package to our example system.

Methods in Ecology and Evolution↗

Cambarus (C.) hatfieldi , a new species of crayfish (Decapoda:Cambaridae) from the Tug Fork River Basin of Kentucky, Virginia and West Virginia, USA

Cambarus ( Cambarus ) hatfieldi is a stream-dwelling crayfish that appears to be endemic to the Tug Fork River system of West Virginia, Virginia, and Kentucky. Within this region, it is prevalent in all major tributaries in the basin as well as the Tug Fork River’s mainstem. The new species is morphologically most similar to Cambarus sciotensis and Cambarus angularis. It can be differentiated from C. sciotensis by its squamous, subtrinagular chelae compared to the elongate triangular chelae of C. sciotensis ; its shorter palm length/palm depth ratio (1.9) compared to C. sciotensis (2.3); and a smaller areola length/total carapace length ratio (30.4% vs.36.5% respectively). Cambarus hatfieldi can be differentiated from C. angularis by its smaller areola length/total carapace length ratio (30.4% vs. 36.7% respectively); a smaller rostrum width/rostral length ratio (59.4% vs. 67.2% respectively); its rounded abdominal pleura as compared to the subtruncated pleura of C . angularis ; the length of the central projection and mesial process of C . hatfieldi which both extend to the margin of the gonopod shaft or slightly beyond the margin compared to the central projection of C. sciotensis and C. angularis where both extend well beyond the margin of the gonopod shaft.

Kentucky, Virginia, West Virginia↗

Sediment samples and channel-geometry data, lower Platte River watershed, Nebraska, 2010

The relation between channel width and stream physical habitat in the lower Platte River in eastern Nebraska was studied as part of the lower Platte River Cumulative Impact Study. The purpose of this component was to document the grain-size distribution of sediment deposited as specific types of physical features, such as sandbars, banks, and stream beds within different hydraulic habitats, within the lower Platte River system. In so doing, the major sources of sediment for sandbar creation downstream are described. Sediment samples were collected from 11 reaches of the lower Platte River from Silver Creek, Nebraska, to the mouth of the Platte River, and from 4 tributary streams. Two bed-material samples, 2 bank-material samples, and 3 sandbar-material samples were collected at main-stem sampling sites, and 1 sample each of bed material and bank material was collected at each tributary sampling site. Aspects of channel geometry, such as channel width, sandbar height and width, and bank height, were measured at each sampled site. This report presents the channel-geometry results and documents the sample-collection methods.

Data Series↗

Accumulation of selenium in benthic bivalves and fine-grained sediments of San Francisco Bay, the Sacramento-San Joaquin Delta, and selected tributaries, 1984-1986

Fine-grained, oxidized, surface sediments and two benthic bivalves (Corbicula sp., a suspension-feeding freshwater clam, and Macoma balthica, a deposit-feeding brackish water clam) were used to examine spatial distributions of selenium within San Francisco Bay and the Sacramento/San Joaquin River Delta and to compare riverine with local inputs of biologically available selenium to this large, complex, urbanized estuary. Selenium concentrations in Corbicula were elevated in the western Delta and northern reach of San Francisco Bay compared to concentrations in Corbicula from river systems not enriched in selenium. Biologically available selenium did not appear to enter the southern Delta or northern reach of the Bay from the San Joaquin River, a possible source, in levels that could measurably influence bioaccumulation by Corbicula. Selenium concentrations in Macoma balthica also were elevated in southern South San Francisco Bay and near the western edge of Suisun Bay.

California↗

Environmental geochemistry of abandoned mercury mines in West-Central Nevada, USA

The Humboldt River is a closed basin and is the longest river in Nevada. Numerous abandoned Hg mines are located within the basin, and because Hg is a toxic heavy metal, the potential transport of Hg from these mines into surrounding ecosystems, including the Humboldt River, is of environmental concern Samples of ore, sediment, water, calcines (roasted ore), and leachates of the calcines were analyzed for Hg and other heavy metals to evaluate geochemical dispersion from the mines. Cinnabar-bearing ore samples collected from the mines contain highly elevated Hg concentrations, up to 6.9 %, whereas calcines collected from the mines contain up to 2000 mg Hg/kg. Stream-sediment samples collected within 1 km of the mines contain as much as 170 mg Hg/kg, but those collected distal from the mines (> 5 km) contain < 1 mg Hg/kg, indicating significant geochemical dispersion of Hg downstream from the mines. Sediment samples collected from the Humboldt River basin contain ??? 0.28 mg Hg/kg. Leachate samples of the calcines obtained by using a synthetic water leaching technique contain as much as 1500 ??g Hg/l, suggesting that some calcines contain soluble Hg compounds. However, much lower Hg concentrations were found in water samples collected from the Humboldt River system, and these were below the 0.012 ??g/l Hg standard used to protect against chronic effects to aquatic wildlife. Mercury transference from these mines to the Humboldt River basin is generally minor because the mines are typically > 8 km from the Humboldt River, and Hg is transported and diluted through a large volume of pediment before it reaches the Humboldt River. ?? 2002 Elsevier Science Ltd. All rights reserved.

Conference Paper↗

Late quaternary history of the snake river in the American Falls region, Idaho

While mapping the American Falls region, we found evidence that contributes to the middle Pleistocene to Recent history of the Snake River, and indirectly to the history of overflow of Lake Bonneville. Middle Pleistocene to recent rocks in the valley are mainly lacustrine and fluvial silts and clays, with some sand, gravel, basalt, and a few thin tuff beds. The formation of terraces can be correlated with events both up- and downstream. The Snake River was at least once, and possibly twice, dammed and diverted by eruptions of basalt, resulting in the formation of lakes and deposition of lacustrine beds. A rather flat-lying, thin, but persistent gravel at the base of one lake bed formation may represent a glacial period, possibly Illinoian, during which the Snake River had a large volume. Overflow of water from Lake Bonneville into the Snake River system, by way of the Marsh Creek-Portneuf valley, laid down a deltaic-fluvial deposit here named the Michaud Gravel. At this time the Snake River, greatly augmented by Lake Bonneville overflow, began to cut channels through and around a lava dam. Terraces between Aberdeen, American Falls, and Pocatello were formed during the existence of the lake in which the Michaud Gravel was deposited and by fluvial processes after drainage of the lake. At one stage in the downcutting, bars of huge basalt boulders were built across the mouths of abandoned spillways. Radiocarbon dating and geologic evidence from the area between Preston and Soda Springs, Idaho, suggest that basalt flows diverted the Bear River into Lake Bonneville, perhaps causing it to overflow. This diversion probably occurred about 33,000 years ago. This dating accords with events in the American Falls region.

Idaho↗

Paleogeomorphology of the early Colorado River inferred from relationships in Mohave and Cottonwood Valleys, Arizona, California and Nevada

Geologic investigations of late Miocene–early Pliocene deposits in Mohave and Cottonwood valleys provide important insights into the early evolution of the lower Colorado River system. In the latest Miocene these valleys were separate depocenters; the floor of Cottonwood Valley was ∼200 m higher than the floor of Mohave Valley. When Colorado River water arrived from the north after 5.6 Ma, a shallow lake in Cottonwood Valley spilled into Mohave Valley, and the river then filled both valleys to ∼560 m above sea level (asl) and overtopped the bedrock divide at the southern end of Mohave Valley. Sediment-starved water spilling to the south gradually eroded the outlet as siliciclastic Bouse deposits filled the lake upstream. When sediment accumulation reached the elevation of the lowering outlet, continued erosion of the outlet resulted in recycling of stored lacustrine sediment into downstream basins; depth of erosion of the outlet and upstream basins was limited by the water levels in downstream basins. The water level in the southern Bouse basin was ∼300 m asl (modern elevation) at 4.8 Ma. It must have drained and been eroded to a level <150 m asl soon after that to allow for deep erosion of bedrock divides and basins upstream, leading to removal of large volumes of Bouse sediment prior to massive early Pliocene Colorado River aggradation. Abrupt lowering of regional base level due to spilling of a southern Bouse lake to the Gulf of California could have driven observed upstream river incision without uplift. Rapid uplift of the entire region immediately after 4.8 Ma would have been required to drive upstream incision if the southern Bouse was an estuary.

Arizona, California, Nevada↗

Data on Streamflow and Quality of Water and Bottom Sediment in and near Humboldt Wildlife Management Area, Churchill and Pershing Counties, Nevada, 1998-2000

This study was initiated to expand upon previous findings that indicated concentrations of dissolved solids, arsenic, boron, mercury, molybdenum, selenium, and uranium were either above geochemical background concentrations or were approaching or exceeding ecological criteria in the lower Humboldt River system. Data were collected from May 1998 to September 2000 to further characterize streamflow and surface-water and bottom-sediment quality in the lower Humboldt River, selected agricultural drains, Upper Humboldt Lake, and Lower Humboldt Drain (ephemeral outflow from Humboldt Sink). During this study, flow in the lower Humboldt River was either at or above average. Flows in Army and Toulon Drains generally were higher than reported in previous investigations. An unnamed agricultural drain contributed a small amount to the flow measured in Army Drain. In general, measured concentrations of sodium, chloride, dissolved solids, arsenic, boron, molybdenum, and uranium were higher in water from agricultural drains than in Humboldt River water during this study. Mercury concentrations in water samples collected during the study period typically were below the laboratory reporting level. However, low-level mercury analyses showed that samples collected in August 1999 from Army Drain had higher mercury concentrations than those collected from the river or Toulon Drain or the Lower Humboldt Drain. Ecological criteria and effect concentrations for sodium, chloride, dissolved solids, arsenic, boron, mercury, and molybdenum were exceeded in some water samples collected as part of this study. Although water samples from the agricultural drains typically contained higher concentrations of sodium, chloride, dissolved solids, arsenic, boron, and uranium, greater instantaneous loads of these constituents were carried in the river near Lovelock than in agricultural drains during periods of high flow or non-irrigation. During this study, the high flows in the lower Humboldt River produced the maximum instantaneous loads of sodium, chloride, dissolved solids, arsenic, boron, molybdenum, and uranium at all river-sampling sites, except molybdenum near Imlay. Nevada Division of Environmental Protection monitoring reports on mine-dewatering discharge for permitted releases of treated effluent to the surface waters of the Humboldt River and its tributaries were reviewed for reported discharges and trace-element concentrations from June 1998 to September 1999. These data were compared with similar information for the river near Imlay. In all bottom sediments collected for this study, arsenic concentrations exceeded the Canadian Freshwater Interim Sediment-Quality Guideline for the protection of aquatic life and probable-effect level (concentration). Sediments collected near Imlay, Rye Patch Reservoir, Lovelock, and from Toulon Drain and Army Drain were found to contain cadmium and chromium concentrations that exceeded Canadian criteria. Chromium concentrations in sediments collected from these sites also exceeded the consensus-based threshold-effect concentration. The Canadian criterion for sediment copper concentration was exceeded in sediments collected from the Humboldt River near Lovelock and from Toulon, Army, and the unnamed agricultural drains. Mercury in sediments collected near Imlay and from Toulon Drain in August 1999 exceeded the U.S. Department of the Interior sediment probable-effect level. Nickel concentrations in sediments collected during this study were above the consensus-based threshold-effect concentration. All other river and drain sediments had constituent concentrations below protective criteria and toxicity thresholds. In Upper Humboldt Lake, chloride, dissolved solids, arsenic, boron, molybdenum, and uranium concentrations in surface-water samples collected near the mouth of the Humboldt River generally were higher than in samples collected near the mouth of Army Drain. Ecological criteria or effect con

Open-File Report↗

Updated annual and semimonthly streamflow statistics for Wild and Scenic Rivers, Owyhee Canyonlands Wilderness, southwestern Idaho, 2021

The U.S. Geological Survey, in cooperation with the Bureau of Land Management (BLM), continued streamflow data collection in water years 2013–21 to update daily streamflow regressions and annual and semimonthly streamflow statistics initially developed in 2012 for streams designated as “wild,” “scenic,” or “recreational” under the National Wild and Scenic Rivers System in the Owyhee Canyonlands Wilderness in southwestern Idaho. To sustain “outstanding remarkable values” in the Owyhee Canyonlands Wilderness, BLM determined that maintaining specific streamflow conditions in rivers was important for sustaining ecological health, recreational opportunities, and water demands for stock water and irrigation in a region with increased pressure from upstream land development. Streamflow statistics previously developed using regional regressions based on limited number of streamgages and generalized basin characteristics were determined to inaccurately represent hydrologic characteristics in the Owyhee Canyonlands Wilderness. In this study, updated streamflow regressions and statistics are provided for 11 partial-record sites in the Owyhee Canyonlands Wilderness using 311 additional streamflow measurements. A partial-record Maintenance of Variance Extension, Type 1 (MOVE.1) streamflow regression method was used to relate discrete streamflow measurements collected at partial-record sites with daily mean streamflow at nearby index sites. The updated regressions were used to estimate a synthetic daily mean streamflow record at each partial-record site for the period of record of the selected index site. The computed synthetic streamflow record was then used to determine annual and semimonthly streamflow statistics at each partial-record site. Annual bankfull streamflow statistics were calculated at each partial-record site using the computed bankfull streamflow at the selected index site and the updated streamflow regression. Additional streamflow measurements representing a larger range of hydrologic conditions since 2012, reevaluation of index site selection, and updated regression techniques improved streamflow statistic estimates in the Owyhee Canyonlands Wilderness. Regression performance was evaluated based on the coefficient of determination (R 2 ) between the partial-record and index sites, percent bias, and similarity of basin characteristics between the selected index site and the partial-record site. Generally, the updated regressions performed well for partial-record sites with an index site located upstream or downstream on the same stream. Regression performance was degraded and less robust for index sites located farther away from the corresponding partial-record site. Additional streamflow measurements at partial-record sites with few measurements over a small range in hydrologic conditions could improve regression performance and reduce prediction intervals. Furthermore, additional index sites in the Owyhee Canyonlands Wilderness could improve the updated streamflow regressions and statistics.

Idaho↗

Polychlorinated biphenyl congener patterns in tree swallows (Tachycineta bicolor) nesting in the Housatonic River watershed, western Massachusetts, USA, using a novel statistical approach

A novel application of a commonly used statistical approach was used to examine differences in polychlorinated biphenyl (PCB) congener Patterns among locations and sample matrices in tree swallows (Tachycineta bicolor) nesting in the Housatonic River watershed in western Massachusetts. USA. The most prevalent PCB congeners in tree swallow tissue samples from the Housatonic River watershed were Ballsmitter Zell numbers 153. 138 180, 187 149, 101, and 170. These congeners were seven of the eight most prevalent congeners in Aroclor (R) 1260, the PCB mixture that was the primary source of contamination in the Housatonic River system. Using paired-Euclidean distances and tolerance limits, it was demonstrated that conuener patterns in swallow tissues from sites on the main stem of the Housatonic River were more similar to one another than to two sites upstream of the contamination or from a nearby reference area. The congener patterns also differed between the reference area and the two upstream tributaries and between the two tributaries. These pattern differences were the same in both pipper (eggs or just hatched nestlings) and 12-day-old nestling samples. Lower-chlorinated congeners appeared to be metabolized in nestlings and pippers compared to diet. and metabolized more in pippers compared to nestlings. Euclidean distances and tolerance limits provide a simple and statistically valid method to compare PCB congener patterns among groups. Published by Elsevier Ltd.

Environmental Pollution↗

DRIFteRS: A dataset of drift invertebrate densities in streams and rivers across western North America, 1997–2024

Prey availability is among the most influential and highly variable determinants of fish growth and freshwater habitat carrying capacity, yet it remains understudied compared to physical habitat variables (Ouellet et al., 2025; Rosenfeld et al., 2014; Weber et al., 2017). We often lack a clear understanding of how much food is available to fishes, how it varies spatially and temporally, and how it influences responses to restoration (Ouellet et al., 2025; Rossi et al., 2024; Wipfli et al., 2010). Drift invertebrates—the primary food source for juvenile salmonids and other drift-foraging fishes—play a pivotal role in these dynamics. To better understand the spatiotemporal variability of drift invertebrate abundance and biomass across the freshwater range of drift-feeding salmonids in western North America, we compiled the DRift Invertebrates For salmonids in River Systems (DRIFteRS) dataset. The dataset encompasses 6125 samples of drift invertebrates, and, for a subset of drift samples, associated benthic invertebrate density data, collected from 1360 reaches on 459 unique rivers and streams spanning 55 river basins considered hydrologically independent (i.e., not nested within the same larger watershed) across British Columbia, Canada, and the U.S. states of Alaska, Arizona, California, Colorado, Idaho, Nevada, New Mexico, Oregon, Utah, Washington, and Wyoming. Sample sites represent a diverse array of river and stream habitats (e.g., headwater, mainstem, side channel), in watersheds with diverse land uses (e.g., urban, wilderness, agricultural), and disturbance histories (e.g., fire, restoration). Collected between 1997 and 2024, the data span the full calendar year and capture daily and seasonal patterns in drift abundance and biomass densities. When paired with water quality and quantity data as well as remotely sensed environmental landscape data, such as land use/land cover, climate, and disturbance history, channel morphology, and riparian vegetation composition, the DRIFteRS dataset can aid in identifying key drivers of drift invertebrate densities and mean body size and support predictive modeling in unsampled locations and times. The dataset may also be used to analyze aquatic-terrestrial resource flows, derive prey-encounter rates and profitability (mean prey size), and inform broader investigations of sit-and-wait foraging ecology, especially when paired with data on drift-foraging predators. For salmonid-focused applications, the dataset can be integrated into habitat evaluation models, including bioenergetic (e.g., Naman et al., 2019) and life cycle models (e.g., Beechie et al., 2023), to improve estimates of habitat capacity and population dynamics for river- and stream-rearing salmonids. Understanding prey availability dynamics is increasingly important, because rising water temperatures increase salmonid metabolic demands (Crozier et al., 2010). Flow regime transitions (i.e., snow or glacier dominated to rain dominated; Beechie et al., 2013), wildfire frequency and intensity (Hessburg et al., 2021), as well as plant community and phenology shifts (Cleland et al., 2007; Franklin et al., 2016) are all predicted to change with rising temperatures and are potential drivers of terrestrial and aquatic invertebrate prey quality and availability in lotic systems. These insights can ultimately inform restoration prioritization and design, helping managers consider food resource implications when evaluating restoration priorities and match habitat improvement to food supply. The data are released under the Creative Commons Attribution 4.0 International license and may be reused with attribution.

Alaska, Arizona, British Columbia, California, Col↗

Use of high-resolution topobathymetry to assess shoreline topography and potential future development of a slack water harbor near Dardanelle, Arkansas, October 2021

The U.S. Army Corps of Engineers (USACE), Southwestern Division, Little Rock District Civil Works program has a mission to maintain cohesion between physical and naturally developed environments. The USACE authorized the development of an off-channel harbor (hereinafter referred to as the “proposed slack water harbor”) along the McClellan-Kerr Arkansas River Navigation System at river mile 202.6, and an initial evaluation of shoreline stability and adjacent land near the proposed harbor was considered essential in establishing a baseline for potential effects and future monitoring. In October 2021, the U.S. Geological Survey, in cooperation with the USACE, completed high-resolution bathymetric (underwater elevation) and topographic surveys of the Arkansas River and a quarry at the location of the proposed slack water harbor near Dardanelle, Arkansas, using a combination of multibeam sound navigation and ranging (sonar) and high-resolution, low-altitude aerial light detection and ranging (lidar) data to provide data and analysis needed for as-built information and future monitoring of river shoreline and floodplain management and maintenance. Bathymetric data were collected using a high-resolution multibeam mapping system, which consists of a multibeam echosounder and an inertial navigation system mounted on a marine survey vessel. Data were collected as the vessel traversed the river and quarry along overlapping survey lines distributed throughout the areas. Topographic data were collected as a lidar point cloud using an unmanned aircraft system (UAS) with a YellowScan Vx20–100 lidar payload, which consists of the lidar scanner and an inertial navigation system. The lidar point cloud data were collected as the UAS followed two sets of parallel transect lines, oriented perpendicular to each other (nominally north to south and east to west) on separate flights. The bathymetric and UAS topographic datasets were combined with topographic data extracted from publicly available aerial lidar data collected in 2014 to create a multisource point cloud classified as “ground” (code 2) according to the American Society for Photogrammetry and Remote Sensing standard lidar point classes in the proposed harbor area and surroundings, from which topographic contours were derived.

Arkansas↗

Hyperspectral imaging of river bathymetry using an ensemble of regression trees

Remote sensing has emerged as an effective tool for characterizing river systems, and machine learning (ML) techniques could make this approach even more powerful. To explore this possibility, we developed an ML-based workflow for hyperspectral imaging of river bathymetry using an ensemble of regression trees (HIRBERT). This approach involves using paired observations of depth and reflectance to select wavelength bands as predictors and then train a depth retrieval model; applying the model to the image yields a spatially continuous bathymetric map. We used data from five rivers with diverse morphologies and optical characteristics to assess whether HIRBERT can (1) provide more accurate depth estimates than a band ratio-based algorithm and (2) extend the range of depths detectable via remote sensing. Relative to single band combinations identified via optimal band ratio analysis (OBRA), regression tree ensembles improved depth retrieval performance, with observed versus predicted (OP) regression R 2 values increasing for all five sites. Similarly, HIRBERT provided more reliable depth estimates than OBRA over the full range of depths present along each river. These results suggest that by incorporating additional spectral information from multiple wavelength bands, ML could enhance bathymetric mapping across a range of river environments. In addition, we show how graphical tools can facilitate interpretation of ML-based depth retrieval models and yield insight regarding relationships between depth and reflectance. The HIRBERT workflow is packaged in free, standalone software developed to support applications in river research and management. Although ML can enhance remote sensing of river bathymetry, the limitations of this approach must also be acknowledged: Field measurements of water depth are required to train a depth retrieval model and the resulting model should only be applied to the image from which the training data were derived. The inherently image-specific nature of this approach implies that developing generalized regression tree ensembles that could be applied at larger scales would require additional research.

California, Idaho, Nebraska, Oregon, Wyoming↗

Channel change and sediment transport in the Puyallup River watershed through 2022

The Puyallup River drains a 990 square mile watershed in western Washington, with headwaters on the glacier-covered flanks of Mount Rainier. Major tributaries include the White, Carbon, and Mowich Rivers. In the levee-confined reaches of the lower watershed, loss of flood conveyance due to sand and gravel deposition has been a chronic issue. Over much of the 20th century, flood conveyance was maintained through sediment removal, but this practice ended in the late 1990s. Flood hazard management activities since the 1990s have primarily involved levee removal or setback projects. Assessments of 1984-2009 repeat cross sections suggested that sediment deposition rates were particularly high in reaches with recent levee setbacks. However, there have been no assessments of recent deposition rates since the 2009 surveys. There are also concerns that intensifying flood hydrology or increased sediment delivery from Mount Rainier may exacerbate deposition. However, assessment of those risks has been hindered by limited understanding of watershed-scale sediment delivery and routing, particularly for coarse sand and gravel. The U.S. Geological Survey, in cooperation with Pierce County, initiated this study to improve understanding of sediment deposition in the lower Puyallup River watershed. This work is primarily based on differencing of multiple aerial lidar datasets collected during 2002–2022, supplemented by early 1990 photogrammetric elevation datasets, geomorphic assessments of streamgage data, historical topographic surveys from 1907, and previously collected sediment transport measurements. Analyses cover the Puyallup, Carbon, and Mowich Rivers, but do not include the White River. During 2004–2020, repeat aerial lidar indicates that 1.3 ± 0.3 million yd3 of sediment accumulated in the lower 20 valley miles (VMs) of the Puyallup River, averaging 80,000 ± 20,000 cubic yards per year (yd3/yr). Deposition was observed during both 2004–11 and 2011–20 lidar differencing intervals. This continued a long-term depositional trend that extends back to at least 1977. From 2004 to 2011, deposition rates along the Soldiers Home levee setback reach, the only setback project downstream of VM 20 completed prior to 2011, were approximately four times higher than in adjacent unmodified reaches. From 2011 to 2020, two additional setback projects were completed; volumetric deposition rates over all three setback reaches were similar to adjacent unmodified reaches, suggesting elevated setback deposition in the 2004–11 interval may have been influenced by an extreme flood in November 2006. These levee setback projects increased the local cross-sectional area of the floodway, used as a rough proxy for relative flood conveyance, by 50 to 200 percent above 2004 conditions. If deposition continued at recent rates, cross-sectional area over the levee setback reaches would be reduced back to 2004 values by 2050-90. Deposition also occurred over the lower six VMs of the Carbon River during 2004–20, though volumes (0.15 ± 0.09 million yd3) were an order of magnitude lower than along the Puyallup River. Relatively lower deposition rates in the Carbon River are most likely the combined result of modestly lower incoming sediment loads, modestly steeper channel slope, and the additional sediment transport capacity provided by two large non-glacial tributaries that enter the Carbon River near VM 5. Upstream of the depositional reaches described above, 2002–22 sediment storage trends along the Puyallup, Carbon, and Mowich Rivers were predominately negative (net erosion) up to the Mount Rainier National Park boundary. Net erosion was the result of bank and bluff erosion exceeding deposition across wetted channel and bare gravel areas, as opposed to uniform vertical downcutting. Net erosion along these river valleys delivered 3.4 ± 0.6 million yd3 to the river system, equivalent to 190,000 ± 35,000 yd3/yr. Most of that volume was supplied by erosion of relatively low (4–10 ft) surfaces along the Puyallup and Mowich Rivers and tall (300 ft) glacial bluffs along the lower Carbon River. Substantial aggradation from 1984 to 2009 reported by Czuba and others (2010) along reaches of the Puyallup River (VM 19–22) where levee confinement has recently been removed was most likely an artifact of methodologic bias. The Puyallup, Mowich, and Carbon Rivers drain five distinct glaciated watersheds on the flanks of Mount Rainier, four of which were assessed in this study. All four watersheds were impacted by an extreme November 2006 rainstorm. Between 2002 and 2008, debris flows occurred in all four headwater areas, collectively eroding at least 2.1 million yd3 of sediment. These debris flows formed distinct deposits one to two miles downstream of source areas, depositing 30-50 percent of the material eroded upstream. From 2008 to 2022, no headwater debris flows were observed and overall rates of geomorphic change in the headwaters were low. Rivers eroded into debris flow deposits emplaced over the 2002–08 interval, but re-deposited equivalent volumes of material within a half mile downstream. Stage-discharge relations at five streamgages on upland rivers draining Mount Rainier show either net channel incision or dynamic variability with no long-term trend over the past 60–100 years. Observations of pervasive river valley erosion and stable or incising trends at long-term streamgages in the upper watershed do not support prior claims of widespread and accelerating aggradation of upland rivers draining Mount Rainier. Erosion and deposition volumes estimated in this report were combined with sediment transport estimates from limited suspended sediment and bedload measurements, estimates of sub-glacial erosion rates, and sediment delivery from non-glacial tributaries to construct watershed-scale sediment budgets for the Puyallup River watershed. During 2004–20, the estimated sediment load entering the depositional lowlands was well balanced by estimated inputs from, in order of relative magnitude, subglacial erosion (33–60 percent of total sediment load), erosion along the major river valleys (25–45 percent), erosion in recently deglaciated headwater areas (7–17 percent) and non-glacial tributaries (3–9 percent). These results are specific to the study period and represent total sediment loads, most of which is fine material carried in suspension. The relative sourcing of sand and gravel may be different than implied by this sediment budget. Downstream of VM 12, comparison of 1907 and 2009 channel surveys show net lowering of the channel thalweg of 4–12 ft. A long-term gage near VM 22 shows lowering of 4–5 ft through the 1960s. Lowering at both locations was inferred to be a channel response to the substantial straightening, and so steepening, of the river during major phases of levee construction through the early and mid-20th century. Application of a simple empirical bedload-discharge power-law relation to an ensemble of model-estimated daily mean discharge records in the lower Puyallup River between 1977 and 2100 projects that annual bedload transport capacity in the lower Puyallup River will increase by 20–60 percent by the middle of the 21st century. Actual changes in bedload transport and deposition rates will depend on concurrent changes in sediment supply and local hydraulics governing deposition. This report presents several key conclusions. First, the persistence and spatial patterns of sand and gravel deposition along the lower Puyallup River support prior claims that deposition is fundamentally caused by decreases in channel slope moving downstream. Given this underlying cause and the abundance of sand and gravel available to be transported downstream, deposition is likely to continue for the foreseeable future. Second, despite continued sediment deposition, recent levee setback projects in the lower Puyallup River will likely provide several decades of flood conveyance benefits relative to a no-action alternative. Third, while the rivers linking Mount Rainier to the Puget Sound lowlands have often been discussed as conduits that either pass or accumulate sediment from Mount Rainier, observations from 2002–22 show these river valleys acting as substantial sediment sources, delivering three times more sediment than recently deglaciated headwater areas on Mount Rainier. While the persistence and underlying cause of recent river valley erosion remain unknown, sediment storage dynamics along these river valleys are likely to be a major control on sand and gravel delivery to the lower watershed.

EarthArXiv↗

The Charles River, Eastern Massachusetts: Scientific Information in Support of Environmental Restoration

Human activity has profoundly altered the Charles River and its watershed over the past 375 years. Restoration of environmental quality in the watershed has become a high priority for private- and public-sector organizations across the region. The U.S. Environmental Protection Agency and the Massachusetts Executive Office of Environmental Affairs worked together to coordinate the efforts of the various organizations. One result of this initiative has been a series of scientific studies that provide critical information concerning some of the major hydrologic and ecological concerns in the watershed. These studies have focused upon: * Streamflows - Limited aquifer storage, growing water demands, and the spread of impervious surfaces are some of the factors exacerbating low summer streamflows in headwater areas of the watershed. Coordinated management of withdrawals, wastewater returns, and stormwater runoff could substantially increase low streamflows in the summer. Innovative approaches to flood control, including preservation of upstream wetland storage capacity and construction of a specially designed dam at the river mouth, have greatly reduced flooding in the lower part of the watershed in recent decades. * Water quality - Since the mid-1990s, the bacterial quality of the Charles River has improved markedly, because discharges from combined sewer overflows and the number of illicit sewer connections to municipal storm drains have been reduced. Improved management of stormwater runoff will likely be required, however, for full attainment of State and Federal water-quality standards. Phosphorus inputs from a variety of sources remain an important water-quality problem. * Fish communities and habitat quality - The Charles River watershed supports a varied fish community of about 20 resident and migratory species. Habitat conditions for fish and other aquatic species have improved in many parts of the river system in recent years. However, serious challenges remain, including the control of nutrients, algae, and invasive plants, mitigation of dam impacts, addressing remaining sources of bacteria to the river, and remediation of contaminated bottom habitat and the nontidal salt wedge in the lower river.

General Information Product↗

Relation of fish intersex to contaminants in riverine sport fishes

Endocrine active compounds (EACs) are pollutants that have been recognized as an emerging and widespread threat to aquatic ecosystems globally. Intersex, the presence of female germ cells within a predominantly male gonad, is considered a biomarker of endocrine disruption caused by EACs. We measured a suite of EACs and assessed their associated impacts on fish intersex occurrence and severity in a large, regulated river system in North Carolina and South Carolina, USA. Our specific objective was to determine the relationship of contaminants in water, sediment, and fish tissue with the occurrence and severity of the intersex condition in wild, adult black bass ( Micropterus ), sunfish ( Lepomis ), and catfish (Ictaluridae) species at 11 sites located on the Yadkin-Pee Dee River. Polycyclic aromatic hydrocarbons (PAHs), ethinylestradiol (EE2), and heavy metals were the most prevalent contaminants that exceeded effect levels for the protection of aquatic organisms. Fish intersex condition was most frequently observed and most severe in black basses and was less frequently detected and less severe in sunfishes and catfishes. The occurrence of the intersex condition in fish showed site-related effects, rather than increasing longitudinal trends from upstream to downstream. Mean black bass and catfish tissue contaminant concentrations were higher than that of sunfish, likely because of the latter's lower trophic position in the food web. Principal component analysis identified waterborne PAHs as the most correlated environmental contaminant with intersex occurrence and severity in black bass and sunfish. As indicated by the intersex condition, EACs have adverse but often variable effects on the health of wild sport fishes in this river, likely due to fluctuations in EAC inputs and the dynamic nature of the riverine system. These findings enhance the understanding of the relationship between contaminants and fish health and provide information to guide ecologically comprehensive conservation and management decisions.

North Carolina, South Carolina↗