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At least 523 records · Page 29Linked to original sources
USGS2024

The potential of remote sensing for improved infectious disease ecology research and practice

Outbreaks of Covid-19 in humans, Dutch elm disease in forests, and highly pathogenic avian influenza in wild birds and poultry highlight the disruptive impacts of emerging infectious diseases on public health, ecosystems, and economies. Infectious disease dynamics often depend on environmental conditions that drive occurrence, transmission, and outbreaks. Remote sensing can contribute to infectious disease research and management by providing standardized environmental data across broad spatial and temporal extents, often at no cost to the user. Here, we 1) conduct a systematic review of primary literature to quantify current uses of remote sensing in disease ecology and 2) synthesize qualitative information to identify opportunities for further integration of remote sensing into disease ecology. We identify that modern advances in airborne remote sensing are promoting early detection of forest pathogens and that satellite data is contributing to the study of geographically widespread human diseases. We discuss opportunities for increased use of data products that characterize vegetation, surface water, and soil; provide data at high spatio-temporal and spectral resolutions; and quantify uncertainty in measurements. Additionally, combining remote sensing with animal movement telemetry can provide novel insights into wildlife disease. Integrating these opportunities will advance research and management of infectious diseases.

Proceedings of the Royal Society B: Biological Sci↗
USGS2021

Decision context as an essential component of population viability analysis

Population viability analysis (PVA) is a widely used tool that applies demographic data in simulation frameworks to assess extinction risk for species or populations. It is used in diverse conservation applications, including evaluating management effectiveness, relative risk of threats, and potential changes to protective status (Beissinger & McCullough, 2002 ), and can be a critical tool for making decisions with imperfect knowledge of the system state, often on limited timelines (Meine et al., 2006 ). Chaudhary and Oli ( 2020 ) recently developed a framework to appraise the quality of PVAs based on the presence of essential background, model, and analysis components. They evaluated 160 published PVAs and reported a decline in the quality of PVAs over time (1990−2017). We agree PVA studies should report unambiguous descriptions of their essential components (Table 1 in Chaudhary and Oli) and explicitly state the model's biological and statistical assumptions. The need for increased transparency in PVAs is evident. Morrison et al. ( 2016 ) reported that only 50% of PVAs published in peer-reviewed and gray literature were both reproducible and repeatable. Further, in an examination of 67 studies that used matrix population models (widely used in PVAs), Kendall et al. ( 2019 ) reported that models frequently contained misspecification errors. Given the rapid advancement of simulation techniques, updated guidance for PVA construction is warranted. However, we believe the essential PVA components identified by Chaudhary and Oli contain a critical omission: the decision context in which the PVA was created and its usefulness in that context. Quality and utility are not mutually exclusive; however, some models that do not meet idealized quality standards might still be valuable because they are useful and represent the best available science for a given decision context (hereafter, decision-support models). The definition of quality for decision-support models should be different than models developed for the purpose of learning (hereafter, heuristic models) and should incorporate how useful the model was, despite information gaps. We further argue that assessment questions should be used prospectively to guide modeling projects, rather than for retrospective comparison of model quality.

Conservation Biology↗
USGS2020

Storm impacts on phytoplankton community dynamics in lakes

In many regions across the globe, extreme weather events such as storms have increased in frequency, intensity, and duration due to climate change. Ecological theory predicts that such extreme events should have large impacts on ecosystem structure and function. High winds and precipitation associated with storms can affect lakes via short‐term runoff events from watersheds and physical mixing of the water column. In addition, lakes connected to rivers and streams will also experience flushing due to high flow rates. Although we have a well‐developed understanding of how wind and precipitation events can alter lake physical processes and some aspects of biogeochemical cycling, our mechanistic understanding of the emergent responses of phytoplankton communities is poor. Here we provide a comprehensive synthesis that identifies how storms interact with lake and watershed attributes and their antecedent conditions to generate changes in lake physical and chemical environments. Such changes can restructure phytoplankton communities and their dynamics, as well as result in altered ecological function (e.g., carbon, nutrient and energy cycling) in the short‐ and long‐term. We summarize the current understanding of storm‐induced phytoplankton dynamics, identify knowledge gaps with a systematic review of the literature, and suggest future research directions across a gradient of lake types and environmental conditions.

Global Change Biology↗
USGS2009

Changing perceptions of change: The role of scientists in tamarix and river management

Initially introduced to western United States to provide ecosystem services such as erosion control, Tamarix by the mid-1900s had became vilified as a profligate waster of water. This large shrub continues, today, to be indicted for various presumed environmental and economic costs, and millions of dollars are expended on its eradication. In this review, we examine the role of scientists in driving changes in perceptions of Tamarix from valuable import to vilified invader and (in some instances) back to a productive member of riparian plant communities. Scientists over the years have sustained a negative perception of Tamarix by, among other things, (1) citing outmoded sources; (2) inferring causation from correlative studies; (3) applying conclusions beyond the scope (domain) of the studies; and (4) emphasizing findings that present the species as an extreme or unnatural agent of change. Recent research is challenging the prevailing dogma regarding Tamarix ’s role in ecosystem function and habitat degradation and many scientists now recommend management shifts from “pest plant” eradication to systemic, process-based restoration. However, prejudice against this and other non-native species persists. To further close the gap between science and management, it is important for scientists to strive to (1) cite sources appropriately; (2) avoid reflexive antiexotic bias; (3) avoid war-based and pestilence-based terminology; (4) heed the levels of certainty and the environmental domain of studies; (5) maintain up-to-date information on educational Web sites; and (6) prior to undertaking restoration or management actions, conduct a thorough and critical review of the literature.

Restoration Ecology↗
USGS2006

Virus diseases of the salmonidae in the western United States. I. Etiology and epizootiology

The history of fish diseases in western United States shows an increasing awareness that viruses could cause epizootics in fish. Fishery biologists bunked first, for protozoan and metazoan parasites, then for bacteria, and if none could be identified assumed that the mortalities were attributable to nutritional deficiency, Microbiologists in general were cognizant of virus diseases in other animals and investigators of fish diseases were alert to the possibility that piscine epizootics could be of similar cause. In 1950 an epizootic occurred in sockeye salmon (Gncorhynchus norkm) that was shown to have a viral etiologic agent. In recent years, with increasing frequency, we have been able to demonstrate a virus utiology for epizootics and panzootics in trout and salmon in several states in the West. FIGURE 1 is a map showing the location of epizootics of infectious pancreatic necrosis (IPN), Sacramento River chinook disease (SRCD), Oregon sockeye disease (OSD), and Columbia River sockeye disease (CRSDJ. The pathology and immunopathology of these are discussed in detail in other reports. The present report was initiated as a review of the literature concerning the diseases and to present in brief a description of their etiologic agents.

Annals of the New York Academy of Sciences↗
USGS2017

Measuring impact crater depth throughout the solar system

One important, almost ubiquitous, tool for understanding the surfaces of solid bodies throughout the solar system is the study of impact craters. While measuring a distribution of crater diameters and locations is an important tool for a wide variety of studies, so too is measuring a crater's “depth.” Depth can inform numerous studies including the strength of a surface and modification rates in the local environment. There is, however, no standard data set, definition, or technique to perform this data‐gathering task, and the abundance of different definitions of “depth” and methods for estimating that quantity can lead to misunderstandings in and of the literature. In this review, we describe a wide variety of data sets and methods to analyze those data sets that have been, are currently, or could be used to derive different types of crater depth measurements. We also recommend certain nomenclature in doing so to help standardize practice in the field. We present a review section of all crater depths that have been published on different solar system bodies which shows how the field has evolved through time and how some common assumptions might not be wholly accurate. We conclude with several recommendations for researchers which could help different data sets to be more easily understood and compared.

Meteoritics and Planetary Science↗
USGS2007

Possible refugia in the Alexander Archipelago of southeastern Alaska during the late Wisconsin glaciation

The interpretation of the extent of late Wisconsin glaciation in southeastern Alaska has varied between geologists and biologists. Maps and reports of the region prepared by geologists commonly indicated that late Wisconsin ice extended as a large uniform front west to the edge of the continental shelf. However, the distribution of plants and animals in the region has led many biologists to suggest that there may have been ice-free areas that served as refugia during the late Wisconsin. Based on analyses of aerial photographs, topographic maps, and bathymetric charts, in conjunction with a review of previous literature and reconnaissance fieldwork throughout the region, this study presents data supporting a limited ice extent in the Alexander Archipelago during the late Wisconsin and identifies possible ice-free areas that may have served as refugia. These areas include (1) the Fairweather Ground, (2) the Herbert Graves Island area, (3) the western coast of southern Baranof Island and adjacent continental shelf, (4) Coronation Island and the adjacent continental shelf, (5) the Warren Island area, (6) the continental shelf from west of Heceta Island to Forrester Island in the south, (7) parts of the west coast of southern Dall Island, and (8) lowland areas in southern Prince of Wales Island. The identification of these possible refugia has bearing on the recolonization of the Alexander Archipelago, as they could have served as centers of biotic dispersal upon regional deglaciation and as stepping stones for early humans with a maritime tradition entering the western hemisphere from Asia. ?? 2007 NRC Canada.

Canadian Journal of Earth Sciences↗
USGS2011

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology↗
USGS2018

Species distribution modeling in regions of high need and limited data: waterfowl of China

Background A number of conservation and societal issues require understanding how species are distributed on the landscape, yet ecologists are often faced with a lack of data to develop models at the resolution and extent desired, resulting in inefficient use of conservation resources. Such a situation presented itself in our attempt to develop waterfowl distribution models as part of a multi-disciplinary team targeting the control of the highly pathogenic H5N1 avian influenza virus in China. Methods Faced with limited data, we built species distribution models using a habitat suitability approach for China’s breeding and non-breeding (hereafter, wintering) waterfowl. An extensive review of the literature was used to determine model parameters for habitat modeling. Habitat relationships were implemented in GIS using land cover covariates. Wintering models were validated using waterfowl census data, while breeding models, though developed for many species, were only validated for the one species with sufficient telemetry data available. Results We developed suitability models for 42 waterfowl species (30 breeding and 39 wintering) at 1 km resolution for the extent of China, along with cumulative and genus level species richness maps. Breeding season models showed highest waterfowl suitability in wetlands of the high-elevation west-central plateau and northeastern China. Wintering waterfowl suitability was highest in the lowland regions of southeastern China. Validation measures indicated strong performance in predicting species presence. Comparing our model outputs to China’s protected areas indicated that breeding habitat was generally better covered than wintering habitat, and identified locations for which additional research and protection should be prioritized. Conclusions These suitability models are the first available for many of China’s waterfowl species, and have direct utility to conservation and habitat planning and prioritizing management of critically important areas, providing an example of how this approach may aid others faced with the challenge of addressing conservation issues with little data to inform decision making.

Avian Research↗
USGS1984

Ecological considerations for the use of dispersants in oil spill response

A multidisciplinary task force with membership from government agencies, academia, and industry is developing ecologically based guidelines for dispersant use in marine and estuarine environments. The guidelines are organized by habitat type (e.g., coral reefs, rocky shores, bird habitats) and consider dispersant use to protect the habitats from impact, to mitigate impacts, and to clean the habitats after a spill. Each guideline contains a description of the habitat type covered, recommendations for dispersant use, and a background section reviewing the relevant literature. The goal is to minimize the ecological impacts of oil spills. Aesthetic, socioeconomic, and political factors are not considered, although it is recognized that these are important concerns during spill response. Use of dispersants is considered along with other appropriate countermeasures and compared with the “no cleanup” alternative.

Book chapter↗
USGS2012

Are Agrofuels a conservation threat or opportunity for grassland birds in the United States?

In the United States, government-mandated growth in the production of crops dedicated to biofuel (agrofuels) is predicted to increase the demands on existing agricultural lands, potentially threatening the persistence of populations of grassland birds they support. We review recently published literature and datasets to (1) examine the ability of alternative agrofuel crops and their management regimes to provide habitat for grassland birds, (2) determine how crop placement in agricultural landscapes and agrofuel-related land-use change will affect grassland birds, and (3) identify critical research and policy-development needs associated with agrofuel production. We find that native perennial plants proposed as feedstock for agrofuel (switchgrass, Panicum virgatum, and mixed grass—forb prairie) have considerable potential to provide new habitat to a wide range of grassland birds, including rare and threatened species. However, industrialization of agrofuel production that maximizes biomass, homogenizes vegetation structure, and results in the cultivation of small fields within largely forested landscapes is likely to reduce species richness and/or abundance of grassland-dependent birds. Realizing the potential benefits of agrofuel production for grassland birds' conservation will require the development of new policies that encourage agricultural practices specifically targeting the needs of grassland specialists. The broad array of grower-incentive programs in existence may deliver new agrofuel policies effectively but will require coordination at a spatial scale broader than currently practiced, preferably within an adaptive-management framework.

The Condor↗
USGS2006

Biodiversity management of fens and fen meadows by grazing, cutting and burning

Question: Can the biodiversity of fens in Europe and North America be maintained through the use of grazing (especially cattle grazing), fire, and/or cutting? Location: European and North American fens. Methods: This paper is a review of the literature on the effects of grazing, fire and cutting on fens, to explore the relationship between management and biodiversity in fens. Results: A reduction of cattle grazing, mowing and burning in fens has led to a reduction in biodiversity in fens. The vegetation of abandoned fens shifts to trees and shrubs after 10-15 years, which shade the smaller and rarer species of these wetlands. While careful use of fire is used to manage fens in North America, it is not widely used in European fens, perhaps because the peat of drained fens may catch fire. Cattle grazing cannot be considered a natural disturbance in North America, since cattle did not evolve on that continent. In Europe, cattle do not generally graze in unaltered fens, but they do use slightly drained fen meadows. Conclusions: Three approaches have been used to control the dominance of tall woody and herbaceous species in abandoned fens, including the re-introduction of cattle, mowing, and burning. Overgrazing results in a permanent reduction in biodiversity, therefore cattle re-introduction must be approached cautiously. In Europe, but not in North America, mowing has been an important management tool, and mowing has been successful in maintaining species richness, particularly in fens that have been mowed annually for centuries. Fire has been the most common and successful management tool in North America although it is not effective in removing shrubs that have become large. Because the problems and solutions are similar, the literature of both European and North American fen management can be analyzed to better assess the management of fens on both continents. Many management questions require further study and these are listed in the paper. ?? IAVS; Opulus Press.

Conference Paper↗
USGS2002

Temperate zone fens of the glaciated Midwestern USA

A study of more than 70 fens in the Midwestern United States and a review of the literature indicates that these temperate zone wetlands may differ from fens of the boreal zone and are not adequately differentiated from the by present classification systems. Fens of the Midwestern temperate zone 1) are wetlands with high botanical diversity, 2) are supported in part by ground water with conductivity > 100mS/cm and circumneutral pH, 3) contain water in the root zone during most of the growing season yet are not usually innudated, and 4) accumulate organic and/or carbonate substrates. Individually, none of these descriptors is adequate to distinguish fens from other wetland communities of the Midwest such as marshes, sedge meadows, and wet prairies; yet, when they are taken together, such discrimination is possible. While fens of this zone share many species, our study does not support using indicator species because too few are both faithfully represented and geographically widespread. Midwestern temperate fens are sustained by forces of climate, landscape, and geology, which permit ground water to seep continuously into the root zone in a focused location. Since water availability in the temperate Midwest is less than in the boreal zone, continuous discharge is needed to maintain the saturation conducive to peat formation.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗
USGS2002

Predation by Oregon spotted frogs (Rana pretiosa) on Western toads (Bufo boreas) in Oregon, USA

Toads of the genus Bufo co-occur with true frogs (family Ranidae) throughout their North American ranges. Yet, Bufo are rarely reported as prey for ranid frogs, perhaps due to dermal toxins that afford them protection from some predators. We report field observations from four different localities demonstrating that Oregon spotted frogs ( Rana pretiosa ) readily consume juvenile western toads ( Bufo boreas ) at breeding sites in Oregon. Unpalatability thought to deter predators of selected taxa and feeding mode may not protect juvenile stages of western toads from adult Oregon spotted frogs. Activity of juvenile western toads can elicit ambush behavior by Oregon spotted frog adults. Our review of published literature suggests that regular consumption of toadlets sets Oregon spotted frogs apart from most North American ranid frogs. Importance of the trophic context of juvenile western toads as a seasonally important resource to Oregon spotted frogs needs critical investigation.

Oregon↗
USGS1949

Research in coal paleobotany since 1943

The varied applications of paleobotany to coal resource studies, coal technology, and to fundamental physical and chemical research on coal are briefly indicated. The usual conception of paleobotany is not as broad as this, and many of the studies of fossil plants have been conducted without reference to the part the plant materials assume in composing coal. The interrelationship of paleobotany with the physical constitution and petrography of coal is an intimate one. which is too involved for treatment in the present paper. Chief emphasis is devoted to review of plant microfossil investigations during the past several years.The consistent abundance of plant microfossils in coal and its associated rocks is now generally recognized. One of the greatest difficulties in using this material for correlation and for extending our knowledge of the plant composition of coal has been in systematic (taxonomic) treatment of the materials. The reviews of recent literature are presented chiefly with reference to the diverse systematic approaches of various authors. The contrast between essentially nonbotanical or morphologic classification schemes, which are simpler to apply and which may serve adequately for local correlational studies, and those studies conceived on a more fundamental basis of plant taxonomy, for paleogeographic and ecologic interpretation of botanically related groups, is presented. Both viewpoints should be kept clearly in mind, since differing circumstances of study and differing objectives may suggest the advisability of using one rather than the other method of systematic treatment of these fossils. No other fossils are so conveniently available from the coal deposits of primary interest.

Economic Geology↗
USGS1950

Uranium in pegmatites

Uranium and rare-earth minerals are common accessory minerals in pegmatite deposits. No domestic pegmatites have been found that are rich enough to support an economic mining operation for uranium alone; however, small quantities of uranium minerals may be recovered as by-products of feldspar or mica mining. Madagascar is the only country that has produced appreciable tonnages of uranium minerals from pegmatites.A review of the literature and observations in the domestic pegmatite districts show that the uranium and rare earth minerals generally occur in pegmatites or pegmatite units rich in potash feldspar. Recent mineralogical and structural studies of pegmatites by the U. S. Geological Survey indicate that, on the basis of geologic mapping, these units can be projected laterally and in depth with reasonable accuracy. In most places the mineral content of these units can be estimated with sufficient accuracy for development purposes.

New Mexico↗
USGS1968

Experimental evidence that fluid inclusions do not leak

The possibility of leakage of fluids into or out of fluid inclusions subjected to large pressure gradients has always been considered a serious problem in the interpretation of inclusion data. As previous experimental evidence on leakage was contradictory, new experiments were performed. Inclusion vapor bubble diameters in twelve quartz crystals (≤ 3 mm; 8 localities), not sawn, ground or polished, were measured. The samples were run at Pa-.o,-4,000 bars, at T u 100°-410° C, for ≤ 17 days total, and remeasured after each run. Similar experiments at ≤ 155° C were made on sphalerite and calcite. Most inclusions in most samples (even those only 5am under the surface in quartz) showed no change in bubble diameter, hence no leakage. A few exceptions, mainly among inclusions homogenizing at T « Tru, had P internal » P internal , hence they ruptured and lost liquid during the 410° C run. From this work and a review of the literature, we conclude that most inclusions have not suffered major leakage. Some previous experiments indicating leakage may be explained by microfractures introduced during sample preparation. The present work does not , however, preclude the possibility of diffusion of small but chemically significant amounts of substances such as hydrogen in or out of inclusions .

Economic Geology↗
USGS2026

Design, construction and application of an automated thermal chamber to determine critical thermal maxima in small anurans

Critical thermal maximum (CTMax) is a thermal threshold useful for understanding physiological boundaries and predicting anuran vulnerability to climate warming. Given the value of this metric, a comprehensive review of the literature on CTMax protocols (1962-2025) revealed widespread methodological inconsistencies and rare verification of ramping rate accuracy, essential to gauge the reliability of estimates and facilitate comparisons among studies. We engineered an inexpensive (<300 USD) automated CTMax chamber incorporating dual thermocouples, a programmable proportional integral derivative (PID) controller, and real-time software monitoring to address these deficiencies. Performance validation across eight trials demonstrated alignment between programmed and observed temperature ramping rate (0.40 vs. 0.39 °C/min; Z = 1.58, P > 0.05). As a proof-of-concept, we used the proposed system to generate CTMax estimates of six species of Eleutherodactylus in Puerto Rico, including first reports for E. brittoni, E. cochranae, E. wightmanae, and E. juanariveroi. CTMax values ranged from 36.30°C ± 0.52 (E. wightmanae) to 42.10°C ± 0.66 (E. cochranae), with warming tolerances ranging from 15.00°C ± 0.63 to 18.18°C ± 0.73. Our design provides an accurate, replicable, and ethical approach for CTMax measurement and enhances the capacity to assess small amphibian vulnerability to global warming.

SSRN↗