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The role of tidal marsh restoration in fish management in the San Francisco Estuary

Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary). Restoration of large areas of tidal marsh is ongoing or planned in the lower estuary (up to 6,000 ha, Callaway et al. 2011). Large areas are proposed for restoration in the upper estuary under the Endangered Species Act biological opinions (3,237 ha) and the Bay Delta Conservation Plan (26,305 ha). In the lower estuary, tidal marsh has proven its value to a wide array of species that live within it (Palaima 2012). In the Sacramento–San Joaquin Delta (Delta), one important function ascribed to restoration of freshwater tidal marshes is that they make large contributions to the food web of fish in open waters (BDCP 2013). The Ecosystem Restoration Program ascribed a suite of ecological functions to tidal marsh restoration, including habitat and food web benefits to native fish (CDFW 2010). This background was the basis for a symposium, Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference? held at the University of California, Davis, on June 10, 2013. This paper summarizes conclusions the authors drew from the symposium.

California↗

Overcoming barriers to progress in seismic monitoring and characterization of debris flows and lahars

Debris flows generate seismic signals that contain valuable information about events as they unfold. Though seismic waves have been used for along-channel debris-flow and lahar monitoring systems for decades, it has proven difficult to move beyond detection to more quantitative characterizations of flow parameters and event size. This is for two primary reasons: (1) our limited understanding of how the radiated wavefield relates to debris flow characteristics and dynamics, and (2) difficulties quantifying the effects of heterogeneous shallow earth structure on the observed wavefield. The latter issue, essentially our inability to sufficiently separate seismic path effects from source information, is a barrier to improving our understanding of the first issue. We review the progress that has been made toward establishing the theory, models and methods required to use seismic observations to make quantitative measurements of flows and summarize the practical, social, and scientific barriers to progress. We discuss some specific ongoing efforts to overcome some of these barriers, with a focus on how we are using large-scale seismic experiments at the U.S. Geological Survey debris-flow flume to develop methods for directly measuring path effects and to develop and validate theoretical debris flow seismicity models.

Conference Paper↗

Modelling development of riparian ranchlands using ecosystem services at the Aravaipa Watershed, SE Arizona

This paper describes how subdivision and development of rangelands within a remote and celebrated semiarid watershed near the US-Mexico border might affect multiple ecohydrological services provided, such as recharge of the aquifer, water and sediment yield, water quality, flow rates and downstream cultural and natural resources. Specifically, we apply an uncalibrated watershed model and land-change forecasting scenario to consider the potential effects of converting rangelands to housing developments and document potential changes in hydrological ecosystem services. A new method to incorporate weather data in watershed modelling is introduced. Results of introducing residential development in this fragile arid environment portray changes in the water budget, including increases in surface-water runoff, water yield, and total sediment loading. Our findings also predict slight reductions in lateral soil water, a component of the water budget that is increasingly becoming recognized as critical to maintaining water availability in arid regions. We discuss how the proposed development on shrub/scrub rangelands could threaten to sever imperative ecohydrological interactions and impact multiple ecosystem services. This research highlights rangeland management issues important for the protection of open-space, economic valuation of rangeland ecosystem services, conservation easements, and incentives to develop markets for these.

Arizona↗

Pesticides detected in surface waters and fish of the Red River of the North drainage basin

The Red River of the North drainage basin (herein referred to as Red River Basin) within the United States is a study unit under the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) program. The overall goals of this program, initiated to better define the status and trends of the Nation’s water quality, are to address regional and national water-quality issues in a nationally consistent manner. Pesticide contamination of surface water and fish is one focus of this program. The Red River Basin is about 90,600 square kilometers (km2 ) in area and is composed of rolling prairie with a high density of prairie-pothole wetlands to the west; a very flat glacial lake bed with drainage ditches and meandering streams in the center (Red River Valley Lake Plain); morainal hills with a mosaic of agriculture, lakes, and forest in the southeast; and a flat lake-washed till plain with extensive peatlands in the northeast (fig. 1). Stoner and others (1993) have given a more complete description of the environmental setting of the Red River Basin. Agriculture is a major component of the region’s economy, and is greatest in the Red River Valley Lake Plain. Principal crops are wheat, barley, oats, sunflowers, corn, soybeans, dry beans, potatoes, sugarbeets, alfalfa hay, and other hay. Herbicide, insecticide, and fungicide use depends on crop type and environmental stresses such as crop disease, drought, and periodic insect-pest infestation. This paper focuses on the occurrence, movement, and fate of agricultural pesticides that are applied to crops, but improper disposal, and use of pesticides for household pests, lawn care, golf courses, and home gardening can also result in contamination of the aquatic environment. Furthermore, atmospheric transport is known to transport pesticides to regions far from their source (Kurtz, 1990). Pesticide data have been collected in the Red River Basin by various Federal, State, and local agencies. Tornes and Brigham (1994) recently summarized many of these historical data. This paper summarizes selected data collected as part of the NAWQA program during 1992-93, and briefly compares these data to historical data and to pesticide usage.

Minnesota, North Dakota, South Dakota↗

International Limnogeology Congress (ILIC6), Reno USA, special issue on new limnogeological research focused on Holocene lake systems

The 6th International Limnogeology Congress (ILIC6) of the International Association of Limnogeology (IAL) was held in Reno, Nevada, USA 15–19 June, 2015. The successful congress brought together a wide variety of academic, government, and industry participants from 20 countries and six continents. The highpoint of the four-day meeting were eight keynote addresses highlighting cutting-edge research in paleolimnology and limnogeology. These addresses were often the focal point of discussions throughout the congress. Among the topics covered in the more than 140 poster presentations included the use of biological proxies to identify paleoenvironmental change due to natural variability and human impact, the evolution of mineral formation in saline lakes, sedimentation deposition processes in Mesoproterozoic lakes, the role of groundwater in lacustrine hydrology, and organic and inorganic contaminant histories in modern lakes.

Conference Paper↗

Gaps in water quality modeling of hydrologic systems

This review assesses gaps in water quality modeling, emphasizing opportunities to improve next-generation models that are essential for managing water quality and are integral to meeting goals of scientific and management agencies. In particular, this paper identifies gaps in water quality modeling capabilities that, if addressed, could support assessments, projections, and evaluations of management alternatives to support ecosystem health and human beneficial use of water resources. It covers surface water and groundwater quality modeling, dealing with a broad suite of physical, biogeochemical, and anthropogenic drivers. Modeling capabilities for six constituents (or constituent categories) are explored: water temperature, salinity, nutrients, sediment, geogenic constituents, and contaminants of emerging concern. Each constituent was followed through the coupled atmospheric-hydrologic-human system, with prominent modeling gaps described for a diverse array of relevant inputs, processes, and human activities. Commonly identified modeling gaps primarily fall under three types: (1) model gaps, (2) data gaps, and (3) process understanding gaps. In addition to potential solutions for addressing specific individual modeling limitations, some broad approaches (e.g., enhanced data collection and compilation, machine learning, reduced-complexity modeling) are discussed as ways forward for tackling multiple gaps. This gap analysis establishes a framework of diverse approaches that may support improved process representation, scale, and accuracy of models for a wide range of water quality issues.

Water↗

National water summary 1983: Hydrologic events and issues

The United States as a Nation possesses abundant water resources and has developed and used those resources extensively. The national renewable supply of water is about 1,400 billion gallons per day (for the conterminous 48 States). Approximately 380 billion gallons per day of freshwater is withdrawn for use by the Nation's homes, farms, and industries, and about 280 billion gallons per day is returned to streams. Although a large percentage of the Nation's waste is carried in this return flow, the quality of water in streams has improved in many respects as a result of the pollution-control pro- grams of recent years. However, much remains to be learned about water quality particularly the extent of contamination by synthetic organic chemicals and heavy metals, and the effects of these contaminants on human health.

Water Supply Paper↗

Preparing for THEMIS controlled global Mars mosaics

We have begun work to prepare for producing controlled 2001 Mars Odyssey THEMIS infrared (IR) and visible (VIS) global mosaics of Mars. This effort is being coordinated with colleagues from Arizona State University and on the THEMIS team who plan to address radiometric issues in making such mosaics. We are concentrating on geometric issues. Several areas of investigation are now in progress, including: a) characterizing the absolute pointing accuracy of THEMIS images; b) investigating whether automatic tie point matching algorithms could be used to provide connections between overlapping THEMIS images; c) developing algorithms to allow for the photogrammetric (bundle) adjustment of the THEMIS IR (line scanner) camera images. Our primary goal in this pilot study effort will be to make several test control THEMIS mosaics and better determine which methods could be used, which require development, and what level of effort is required, in order to make large regional or global controlled THEMIS mosaics.

Conference Paper↗

Towards sustainable management of Louisiana's coastal wetland forests: Problems, constraints, and a new beginning

Over 345,000 ha of forested swamps occur throughout the Mississippi River Deltaic Plain. Natural and anthropogenic changes in hydrology and geomorphology at local and landscape levels have reduced the productivity in many of these coastal wetland forests areas and have caused the complete loss of forest cover in some places. A summary and interpretation of the available science, suggestions for policy change, and a multidisciplinary (multi-responsibility) approach were needed to address these issues [in the context of private land]. In response, the Louisiana Governor's office formed a Coastal Wetland Forest Conservation and Use Science Working Group (SWG) and an associated Advisory Panel to provide the Governor with information and suggestions of strategies for environmental and economic utilization, conservation, and protection of Louisiana's coastal wetland forest ecosystem in the long-term. The process of engaging scientists, resource managers, and other stakeholders in this effort is described, and the recommendations of the SWG are presented relative to forestry practices and the potential for sustainable management of coastal wetland forests.

Louisiana↗

Challenges in recovering resources from acid mine drainage

Metal recovery from mine waters and effluents is not a new approach but one that has occurred largely opportunistically over the last four millennia. Due to the need for low-cost resources and increasingly stringent environmental conditions, mine waters are being considered in a fresh light with a designed, deliberate approach to resource recovery often as part of a larger water treatment evaluation. Mine water chemistry is highly dependent on many factors including geology, ore deposit composition and mineralogy, mining methods, climate, site hydrology, and others. Mine waters are typically Ca-Mg-SO4±Al±Fe with a broad range in pH and metal content. The main issue in recovering components of these waters having potential economic value, such as base metals or rare earth elements, is the separation of these from more reactive metals such as Fe and Al. Broad categories of methods for separating and extracting substances from acidic mine drainage are chemical and biological. Chemical methods include solution, physicochemical, and electrochemical technologies. Advances in membrane techniques such as reverse osmosis have been substantial and the technique is both physical and chemical. Biological methods may be further divided into microbiological and macrobiological, but only the former is considered here as a recovery method, as the latter is typically used as a passive form of water treatment.

Conference Paper↗

Conceptual understanding and groundwater quality of selected basin-fill aquifers in the Southwestern United States

The National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey has been conducting a regional analysis of water quality in the principal aquifer systems in the southwestern United States (hereinafter, “Southwest”) since 2005. Part of the NAWQA Program, the objective of the Southwest Principal Aquifers (SWPA) study is to develop a better understanding of water quality in basin-fill aquifers in the region by synthesizing information from case studies of 15 basins into a common set of important natural and human-related factors found to affect groundwater quality. The synthesis consists of three major components: 1. Summary of current knowledge about the groundwater systems, and the status of, changes in, and influential factors affecting quality of groundwater in basin-fill aquifers in 15 basins previously studied by NAWQA (this report). 2. Development of a conceptual model of the primary natural and human-related factors commonly affecting groundwater quality, thereby building a regional understanding of the susceptibility and vulnerability of basin-fill aquifers to contaminants. 3. Development of statistical models that relate the concentration or occurrence of specific chemical constituents in groundwater to natural and human-related factors linked to the susceptibility and vulnerability of basin-fill aquifers to contamination. Basin-fill aquifers occur in about 200,000 mi 2 of the 410,000 mi 2 SWPA study area and are the primary source of groundwater supply for cities and agricultural communities. Four of the principal aquifers or aquifer systems of the United States are included in the basin-fill aquifers of the study area: (1) the Basin and Range basin-fill aquifers in California, Nevada, Utah, and Arizona; (2) the Rio Grande aquifer system in New Mexico and Colorado; (3) the California Coastal Basin aquifers; and (4) the Central Valley aquifer system in California. Because of the generally limited availability of surface-water supplies in the arid to semiarid climate, cultural and economic activities in the Southwest are particularly dependent on supplies of good-quality groundwater. Irrigation and public-supply withdrawals from basin-fill aquifers in the study area account for about one quarter of the total withdrawals from all aquifers in the United States. Many factors influence the quality of groundwater in the 15 case-study basins, but some common factors emerge from the basin summaries presented in this report. These factors include the chemical composition of the recharge water, consolidated rock geology and composition of aquifer materials derived from consolidated rock, and land and water use. The major water-quality issues in many of the developed case-study basins are increased concentrations of dissolved solids, nitrate, and VOCs in groundwater as a result of human activities. The information presented and the citations listed in this report serve as a resource for those interested in the groundwater-flow systems in the NAWQA case-study basins. The summaries of water-development history, hydrogeology, conceptual understanding of the groundwater system under both predevelopment and modern conditions, and effects of natural and human-related factors on groundwater quality presented in the sections on each basin also serve as a foundation for the synthesis and modeling phases of the SWPA regional study.

Arizona, California, Colorado, Nevada, New Mexico,↗

Reflections on a vision for integrated research and monitoring after 15 years

In May of 1998, Owen Bricker and his co-author Michael Ruggiero introduced a conceptual design for integrating the Nation’s environmental research and monitoring programs. The Framework for Integrated Monitoring and Related Research was an organizing strategy for relating data collected by various programs, at multiple spatial and temporal scales, and by multiple science disciplines to solve complex ecological issues that individual research or monitoring programs were not designed to address. The concept nested existing intensive monitoring and research stations within national and regional surveys, remotely sensed data, and inventories to produce a collaborative program for multi-scale, multi-network integrated environmental monitoring and research. Analyses of gaps in data needed for specific issues would drive decisions on network improvements or enhancements. Data contributions to the Framework from existing networks would help indicate critical research and monitoring programs to protect during budget reductions. Significant progress has been made since 1998 on refining the Framework strategy. Methods and models for projecting scientific information across spatial and temporal scales have been improved, and a few regional pilots of multi-scale data-integration concepts have been attempted. The links between science and decision-making are also slowly improving and being incorporated into science practice. Experiments with the Framework strategy since 1998 have revealed the foundational elements essential to its successful implementation, such as defining core measurements, establishing standards of data collection and management, integrating research and long-term monitoring, and describing baseline ecological conditions. They have also shown us the remaining challenges to establishing the Framework concept: protecting and enhancing critical long-term monitoring, filling gaps in measurement methods, improving science for decision support, and integrating the disparate integrated science efforts now underway. In the 15 years since the Bricker and Ruggiero (Ecol Appl 8(2):326–329, 1998) paper challenged us with a new paradigm for bringing sound and comprehensive science to environmental decisions, the scientific community can take pride in the progress that has been made, while also taking stock of the challenges ahead for completing the Framework vision.

Aquatic Geochemistry↗

Extension of EMA to address regional skew and low outliers

The recently developed expected moments algorithm [EMA] (Cohn et al. 1997) does as well as MLEs at estimating LP3 flood quantiles using systematic and historical information. Needed extensions include use of a regional skewness estimator and its precision to be consistent with Bulletin 17B and to make use of such hydrologic information. Another issue addressed by Bulletin 17B is the treatment of low outliers. A Monte Carlo study illustrates the performance of an extended EMA estimator compared to estimators that employ the complete data set with and without use of regional skew, conditional probability adjustment from Bulletin 17B, and an estimator that uses probability plot regression to compute substitute values for low outliers. Estimators that use a regional skew all do better than estimators that fail to use an informative regional skewness estimator. For LP3 data, the low outlier rejection procedure results in no loss of overall accuracy, and the differences between the MSEs of the estimators that used an informative regional skew were generally negligible in the skew range of real interest.

Conference Paper↗

El Grupo Cerúleo: Collaboration to assess nonbreeding range of cerulean warbler in South America

Cerulean Warbler ( Dendroica cerulea . Parulidae) has been listed as a vulnerable species by the International Union for the Conservation of Nature because of recent population declines. An international, proactive approach to Cerulean Warbler conservation, the Cerulean Warbler Technical Group, was founded in 2001. One of its subcommittees, El Grupo Cerúleo, addresses nonbreeding season issues to promote the protection of this bird through habitat conservation, field research on Cerulean Warbler winter ecology, public awareness, and the development of a predictive model to allow for assessment and monitoring of Cerulean Warbler. Most of the recent efforts of this group have been devoted to studying and understanding the spatial distribution of the Cerulean Warbler in South America through predictive models as a highly necessary strategy to elucidating the bird's occurrence, and thereby to identify and locate important nonbreeding habitats and areas of concentration in the Neotropics. To address this issue, members of EI Grupo Cerúleo developed five hypothetical models of potential distribution of the bird in the northern Andes based on existing historical records and surveys conducted by EI Grupo members. In order to validate the model output, we selected locations to verify the occurrence of the species, based on a stratified-random design, using locations where the Cerulean Warbler was predicted to occur by all five models. We elaborated field protocols to survey these locations. Resulting data will be structured for analysis using the techniques of occupancy modeling. Basic survey designs to carry out the fieldwork as well as preliminary results of the first year's fieldwork are presented. - See more at: http://www.srs.fs.usda.gov/pubs/31535#sthash.Lt3G7a8H.dpuf

Conference Paper↗

Facilitating adaptive management in the Chesapeake Bay Watershed through the use of online decision support tools

The Chesapeake Bay Program (CBP) is attempting to more strategically implement management actions to improve the health of the Nation’s largest estuary. In 2007 the U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (USEPA) CBP office began a joint effort to develop a suite of Internetaccessible decision-support tools and to help meet the needs of CBP partners to improve water quality and habitat conditions in the Chesapeake Bay and its watersheds. An adaptive management framework is being used to provide a structured decision process for information and individual tools needed to implement and assess practices to improve the condition of the Chesapeake Bay ecosystem. The Chesapeake Online Adaptive Support Toolkit (COAST) is a collection of web-based analytical tools and information, organized in an adaptive management framework, intended to aid decisionmakers in protecting and restoring the integrity of the Bay ecosystem. The initial version of COAST is focused on water quality issues. During early and mid- 2008, initial ideas for COAST were shared and discussed with various CBP partners and other potential user groups. At these meetings, test cases were selected to help improve understanding of the types of information and analytical functionality that would be most useful for specific partners’ needs. These discussions added considerable knowledge about the nature of decisionmaking for Federal, State, local and nongovernmental partners. Version 1.0 of COAST, released in early winter of 2008, will be further reviewed to determine improvements needed to address implementation and assessment of water quality practices. Future versions of COAST may address other aspects of ecosystem restoration, including restoration of habitat and living resources and maintaining watershed health.

Conference Paper↗

Advancing coastal ocean modelling, analysis, and prediction for the US Integrated Ocean Observing System

This paper outlines strategies that would advance coastal ocean modelling, analysis and prediction as a complement to the observing and data management activities of the coastal components of the US Integrated Ocean Observing System (IOOS®) and the Global Ocean Observing System (GOOS). The views presented are the consensus of a group of US-based researchers with a cross-section of coastal oceanography and ocean modelling expertise and community representation drawn from Regional and US Federal partners in IOOS. Priorities for research and development are suggested that would enhance the value of IOOS observations through model-based synthesis, deliver better model-based information products, and assist the design, evaluation, and operation of the observing system itself. The proposed priorities are: model coupling, data assimilation, nearshore processes, cyberinfrastructure and model skill assessment, modelling for observing system design, evaluation and operation, ensemble prediction, and fast predictors. Approaches are suggested to accomplish substantial progress in a 3–8-year timeframe. In addition, the group proposes steps to promote collaboration between research and operations groups in Regional Associations, US Federal Agencies, and the international ocean research community in general that would foster coordination on scientific and technical issues, and strengthen federal–academic partnerships benefiting IOOS stakeholders and end users.

Journal of Operational Oceanography↗

Major sedimentation issues for the USGS

Historically, sediment information has been used primarily in planning for engineering structures that were designed to meet a single or a very limited number of objectives. Today most water-resource systems are fully developed, but society is asking that the existing systems be operated to meet multiple objectives, which often were not considered in the original system design. Sediment related problems that seem to be of highest priority today include: 1. The relation of sediment transport to the transport and fate of attached pollutants, 2. Documentation of the mean sediment concentration and load as well as the natural variability of instantaneous sediment concentrations and loads as related to land use, and 3. Evaluation of the effect of sediment on fish and wildlife habitat. The sediment program of the U.S. Geological Survey (USGS) is changing in response to these changing priorities as it attempts to remain relevant and responsive to current problems.

Conference Paper↗

Ten suggestions to strengthen the science of ecology

There are few well-documented, general ecological principles that can be applied to pressing environmental issues. When they discuss them at all, ecologists often disagree about the relative importance of different aspects of the science's original and still important issues. It may be that the sum of ecological science is not open to universal statements because of the wide range of organizational, spatial, and temporal phenomena, as well as the sheer number of possible interactions. We believe, however, that the search for general principles has been inadequate to establish the extent to which generalities are possible. We suggest that ecologists may need to reconsider how we view our science. This article lists 10 suggestions for ecology, recognizing the many impediments to finding generalizations in this field, imposed in part by the complexity of the subject and in part by limits to funding for the study of ecology.

Conference Paper↗