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At least 523 records · Page 29Linked to original sources

Integrating climate data and river modeling to reveal Chinook salmon habitat conditions in subarctic river basins

Climatic extremes can impact the productivity of aquatic species, affecting ecosystems and fishery-dependent communities. Advances in climate products, such as gridded datasets and downscaled projections, may be useful for quantifying freshwater habitat conditions and predicting climate change effects on fish. However, limited guidance exists for selecting climate products to develop indicators of freshwater habitat conditions that influence fish population dynamics. Here, we develop an approach for identifying streamflow and stream temperature models to address this need. We evaluated skill in predicted versus observed streamflow and stream temperature, with predictions depending on different models and gridded climate data as inputs. The best performing models were used in a case study exploring habitat conditions influencing Chinook salmon in the Yukon and Kuskokwim River basins, two remote high-latitude watersheds with few in situ habitat observations and recent salmon declines. Three modeled streamflow datasets had variable performance (median Nash–Sutcliffe efficiencies from 0.39 to 0.70). Three gridded temperature products differed in their ability to explain variation in weekly stream temperatures (median r 2 from 0.42 to 0.76). We selected a single gridded air temperature dataset to compare two novel predictive stream temperature models, both of which had good accuracy (root mean squared error [RMSE] of 1.19 and 0.95°C). Stream temperature indicators calculated from modeled daily data, maximum temperatures during adult migration and cumulative temperatures during juvenile rearing, had high spatial correlation across tributaries within the Yukon and Kuskokwim River basins and showed significant warming over the past 40 years. Streamflow indicators calculated from modeled daily data, maximum flow during spawning and median flow during rearing, had few trends and were largely uncorrelated within the Yukon River basin and moderately correlated within the Kuskokwim River basin. Overall, we found that generic measures of model performance varied considerably, and it was important to consider the models best suited to our case study. For both streamflow and stream temperature, multiple high-performing models allowed estimation of ecologically relevant conditions affecting Chinook salmon. The approach we used to estimate local-scale habitat conditions has value to identify synchronous conditions that may influence multiple salmon populations under a changing subarctic climate.

Alaska↗

Characterizing mauka-to-makai connections for aquatic ecosystem conservation on Maui, Hawaiʻi

Mauka-to-makai (mountain to sea in the Hawaiian language) hydrologic connectivity – commonly referred to as ridge-to-reef – directly affects biogeochemical processes and socioecological functions across terrestrial, freshwater, and marine systems. The supply of freshwater to estuarine and nearshore environments in a ridge-to-reef system supports the food, water, and habitats utilized by marine fauna . In addition, the ecosystem services derived from this land-to-sea connectivity support social and cultural practices (hereafter referred to as socio-cultural) including fishing, aquaculture, wetland agriculture, religious ceremonies, and recreational activities. To effectively guide island resource management, a better understanding of the linkages from ridge-to-reef across natural and social usages is critical, particularly in the context of climate change, with anticipated increasing temperature and shifting precipitation patterns. The objective of this study was to identify spatial linkages that promote multiple and diverse uses, following the ridge-to-reef concept, at an island-wide scale to identify regions of high conservation importance for aquatic resources. We selected the Island of Maui as a study representative of many Pacific islands. Diverse datasets, including agricultural lands within watersheds, wetland locations, presence of stream species, indicators of freshwater input from streams, coral cover, nearshore fish biomass, socio-cultural data such as fishpond locations, wetland taro cultivation, beach recreation use, and lastly the dynamically downscaled Coupled Model Intercomparison Project Phase (CMIP5) future climate projections scenarios (Representative Concentration Pathway (RCP) 4.5 & 8.5) were used to examine the spatial linkages through hydrological connectivity from land to the sea. Zonation spatial planning software was used to prioritize areas of high management and conservation value and to help inform aquatic resources management. The resulting prioritized areas included many minimally disturbed watersheds in east Maui and western nearshore and coastal zones that are adjacent to diverse coral reefs. These results are driven by the importance of fish biomass and coral reef distribution as well as traditional wetland taro cultivation and coastal access points for recreation. These results underline the importance of examining ridge-to-reef systems for aquatic resource management and including important social and cultural values in resource management upon planning adaptation strategies for climate change. Improving our understanding of diverse natural and socio-cultural influences on habitat conditions and their values in these areas provides an opportunity to strategically plan future management and conservation actions.

Hawaii↗

Survey of chemical contaminants in the Hanalei River, Kaua'i, Hawai'i, 2001

The Hanalei River on the island of Kaua'i in Hawai'i was designated an American Heritage River in 1998, providing special attention to natural resource protection, economic revitalization, and historic and cultural preservation. Agricultural, urban, and tourism-related activities are potential sources of contamination within the Hanalei River watershed. The objective of this study was to measure certain persistent organic chemicals and elements in the Hanalei River. During a relatively low-flow period in December of 2001, samples of native Akupa sleeper fish ( Eleotris sandwicensis ), freshwater Asian clam ( Corbicula fluminea ), giant mud crab ( Scylla serrata ), surface water, and stream bed sediment were collected from a lower estuarine reach of the river near its mouth at Hanalei Bay and from an upper reach at the Hanalei National Wildlife Refuge. Samples were analyzed for residues of urban and agricultural chemicals including organochlorine pesticides, polychlorinated biphenyls, polycyclic aromatic hydrocarbons, and elements (including mercury, lead, cadmium, arsenic, and selenium). Organic contaminants were extracted from the samples with solvent, enriched, and then analyzed by gas chromatographic analysis with electron capture or mass spectrometric detection. Samples were acid-digested for semi-quantitative analysis for elements by inductively-coupled plasma-mass spectrometry and for quantitative analysis by atomic absorption spectrophotometry. Concentrations of organochlorine pesticides, polycyclic aromatic hydrocarbons, and polychlorinated biphenyls in biota, surface water, and bed sediment sampled from the Hanalei River ranged from nondetectable to very low levels. Polychlorinated biphenyls were below detection in all samples. Dieldrin, the only compound detected in the water samples, was present at very low concentrations of 1-2 nanograms per liter. Akupa sleeper fish and giant mud crabs from the lower reach ranged from 1 to 5 nanograms per gram (wet weight) dieldrin and from less than 0.3 to 2.1 nanograms per gram total chlordane. Concentrations of individual polycyclic aromatic hydrocarbons in the lower reach bed sediments ranged from less than 1 to 190 nanograms per gram (dry weight). Relative concentrations (patterns) of the polycyclic aromatic hydrocarbons in one portion of a sediment sample indicated combustion sources. Concentrations of elements in the surface water, biota, and sediment samples were below toxicity thresholds of ecological concern. In summary, concentrations of the organic contaminants and elements targeted by this study of the Hanalei River in 2001 were below U.S. Environmental Protection Agency probable adverse effects levels for aquatic organisms.

Scientific Investigations Report↗

Spatial and temporal patterns of mercury concentrations in freshwater fish across the Western United States and Canada

Methylmercury contamination of fish is a global threat to environmental health. Mercury (Hg) monitoring programs are valuable for generating data that can be compiled for spatially broad syntheses to identify emergent ecosystem properties that influence fish Hg bioaccumulation. Fish total Hg (THg) concentrations were evaluated across the Western United States (US) and Canada, a region defined by extreme gradients in habitat structure and water management. A database was compiled with THg concentrations in 96,310 fish that comprised 206 species from 4262 locations, and used to evaluate the spatial distribution of fish THg across the region and effects of species, foraging guilds, habitats, and ecoregions. Areas of elevated THg exposure were identified by developing a relativized estimate of fish mercury concentrations at a watershed scale that accounted for the variability associated with fish species, fish size, and site effects. THg concentrations in fish muscle ranged between 0.001 and 28.4 (μg/g wet weight (ww)) with a geometric mean of 0.17. Overall, 30% of individual fish samples and 17% of means by location exceeded the 0.30 μg/g ww US EPA fish tissue criterion. Fish THg concentrations differed among habitat types, with riverine habitats consistently higher than lacustrine habitats. Importantly, fish THg concentrations were not correlated with sediment THg concentrations at a watershed scale, but were weakly correlated with sediment MeHg concentrations, suggesting that factors influencing MeHg production may be more important than inorganic Hg loading for determining fish MeHg exposure. There was large heterogeneity in fish THg concentrations across the landscape; THg concentrations were generally higher in semi-arid and arid regions such as the Great Basin and Desert Southwest, than in temperate forests. Results suggest that fish mercury exposure is widespread throughout Western US and Canada, and that species, habitat type, and region play an important role in influencing ecological risk of mercury in aquatic ecosystems.

Science of the Total Environment↗

Ecological and evolutionary patterns of freshwater maturation in Pacific and Atlantic salmonines

Reproductive tactics and migratory strategies in Pacific and Atlantic salmonines are inextricably linked through the effects of migration (or lack thereof) on age and size at maturity. In this review, we focus on the ecological and evolutionary patterns of freshwater maturation in salmonines, a key process resulting in the diversification of their life histories. We demonstrate that the energetics of maturation and reproduction provides a unifying theme for understanding both the proximate and ultimate causes of variation in reproductive schedules among species, populations, and the sexes. We use probabilistic maturation reaction norms to illustrate how variation in individual condition, in terms of body size, growth rate, and lipid storage, influences the timing of maturation. This useful framework integrates both genetic and environmental contributions to conditional strategies for maturation and, in doing so, demonstrates how flexible life histories can be both heritable and subject to strong environmental influences. We review evidence that the propensity for freshwater maturation in partially anadromous species is predictable across environmental gradients at geographic and local spatial scales. We note that growth is commonly associated with the propensity for freshwater maturation, but that life-history responses to changes in growth caused by temperature may be strikingly different than changes caused by differences in food availability. We conclude by exploring how contemporary management actions can constrain or promote the diversity of maturation phenotypes in Pacific and Atlantic salmonines and caution against underestimating the role of freshwater maturing forms in maintaining the resiliency of these iconic species.

Reviews in Fish Biology and Fisheries↗

Suspended sediment transport trough a large fluvial-tidal channel network

The confluence of the Sacramento and San Joaquin Rivers, CA, forms a large network of interconnected channels, referred to as the Sacramento-San Joaquin Delta (the Delta). The Delta comprises the transition zone from the fluvial influences of the upstream rivers and tidal influences of San Francisco Bay downstream. Formerly an extensive tidal marsh, the hydrodynamics and geomorphology of Delta have been substantially modified by humans to support agriculture, navigation, and water supply. These modifications, including construction of new channels, diking and draining of tidal wetlands, dredging of navigation channels, and the operation of large pumping facilities for distribution of freshwater from the Delta to other parts of the state, have had a dramatic impact on the physical and ecological processes within the Delta. To better understand the current physical processes, and their linkages to ecological processes, the USGS maintains an extensive network of flow, sediment, and water quality gages in the Delta. Flow gaging is accomplished through use of the index-velocity method, and sediment monitoring uses turbidity as a surrogate for suspended-sediment concentration. Herein, we present analyses of the transport and dispersal of suspended sediment through the complex network of channels in the Delta. The primary source of sediment to the Delta is the Sacramento River, which delivers pulses of sediment primarily during winter and spring runoff events. Upon reaching the Delta, the sediment pulses move through the fluvial-tidal transition while also encountering numerous channel junctions as the Sacramento River branches into several distributary channels. The monitoring network allows us to track these pulses through the network and document the dominant transport pathways for suspended sediment. Further, the flow gaging allows for an assessment of the relative effects of advection (the fluvial signal) and dispersion (from the tides) on the sediment pulses as they move through the system. Herein, we present analyses of the “first flush” sediment pulse that occurred on the Sacramento River in December 2012, documenting the transport pathways as well as the effects of advection and dispersion on the sediment as it moved through the fluvial-tidal transition in the Delta. The analyses identified an important transport pathway through the interior of the Delta toward the large pumping facilities in the south Delta, which has important implications for native fish (because their movements are triggered by sediment/turbidity). The results also reveal the dramatic transition from fluvial-dominated transport (advection) to tidal-dominated transport (dispersion) as the sediment pulse approaches the estuary.

California↗

Optimizing control of a freshwater invader in time and space

The global spread of invasive species in aquatic ecosystems has prompted population control efforts to mitigate negative impacts on native species and ecosystem functions. Removal programs that optimally allocate removal effort across space and time offer promise for improving invader suppression or eradication, especially given the limited resources available to these programs. However, science-based guidance to inform such programs remains limited. This study leverages two intensive fish removal programs for nonnative green sunfish (Lepomis cyanellus) in intermittent streams of the Bill Williams River basin in Arizona, USA, to explore alternative management strategies involving variable allocation of removal effort in time and space and compare static versus dynamic decision rules. We used Bayesian hierarchical modeling to estimate demographic parameters using existing removal data, with evidence that both removal programs led to at least a 0.39 probability of eradication. Simulated alternative management strategies revealed that population suppression, but not eradication, could be achieved with reduced effort, and that dynamic management practices that respond to species abundance in real time can improve the efficiency of removal efforts. High removal frequency and program duration, including continued monitoring after zero fish were captured, contributed to successful population control. With management efforts struggling to keep pace with the rising spread and impacts of invasive species, this research demonstrates the utility of quantitative removal models to help improve invasive removal programs and robustly evaluate the success of population suppression and eradication.

Arizona↗

Linking bathythermal habitat selection to management of a migratory freshwater fish

Background For migratory fishes, habitat selection in dimensions of temperature and depth may be jointly used to define the bathythermal niche. Seasonal and long-term changes in the availability of bathythermal habitat can cause behavioral responses that have consequences for managing interjurisdictional fisheries that target migratory fishes. Management of such fisheries typically relies on standardized surveys to provide knowledge of stock status, yet changes in fish behavior may complicate interpretation of survey results. For example, changes in bathythermal habitat selection could uncouple fish availability from surveys designed to intercept migrating fish in predefined bathythermal habitats. Methods We applied electronic tagging methods to Lake Erie walleye ( Sander vitreus ) to address spatial management and stock assessment questions regarding bathythermal habitat. Specifically, we sought to determine if bathythermal habitat use varied in relation to body size, season, and time of day, with a particular focus on how these may influence availability to fisheries-independent surveys conducted during September-November. Results As predicted, bathythermal habitat distribution fluctuated substantially throughout the year, was most limited during spawning months, and most expansive during fall migration. During the summer stratified months, walleye primarily selected epilimnetic habitats, despite the prevailing notion that colder hypolimnetic waters would be preferred during this time. Conclusions While our results did not support a previous hypothesis that smaller fish were more available to assessment survey gears, our results did support previous assertions that walleye were more active and available to suspended gill nets during late crepuscular periods in fall. Considering uncertainties in water quality and long-term warming trends, our case study could improve decisions regarding spatial management of this species in the context of independent water quality management objectives.

Detroit River, Lake Erie, Lake St. Clair↗

The influence of drought on flow‐ecology relationships in Ozark Highland streams

Drought and summer drying can have strong effects on abiotic and biotic components of stream ecosystems. Environmental flow‐ecology relationships may be affected by drought and drying, adding further uncertainty to the already complex interaction of flow with other environmental variables, including geomorphology and water quality. Environment–ecology relationships in stream communities in Ozark Highland streams, USA, were examined over two years with contrasting environmental conditions, a drought year (2012) and a flood year (2013). We analysed fish, crayfish and benthic macroinvertebrate assemblages using two different approaches: (1) a multiple regression analysis incorporating predictor variables related to habitat, water quality, geomorphology and hydrology and (2) a canonical ordination procedure using only hydrologic variables in which forward selection was used to select predictors that were most related to our response variables. Reach‐scale habitat quality and geomorphology were found to be the most important influences on community structure, but hydrology was also important, particularly during the flood year. We also found substantial between‐year variation in environment–ecology relationships. Some ecological responses differed significantly between drought and flood years, while others remained consistent. We found that magnitude was the most important flow component overall, but that there was a shift in relative importance from low flow metrics during the drought year to average flow metrics during the flood year, and the specific metrics of importance varied markedly between assemblages and years. Findings suggest that understanding temporal variation in flow‐ecology relationships may be crucial for resource planning. While some relationships show temporal variation, others are consistent between years. Additionally, different kinds of hydrologic variables can differ greatly in terms of which assemblages they affect and how they affect them. Managers can address this complexity by focusing on relationships that are temporally stable and flow metrics that are consistently important across groups, such as flood frequency and flow variability.

Arkansas, Missouri, Oklahoma↗

Patterns of lake occupancy by fish indicate different adaptations to life in a harsh Arctic environment

Summary For six fish species sampled from 86 lakes on the Arctic Coastal Plain, Alaska, we examined whether lake occupancy was related to variables representing lake size, colonisation potential and/or the presence of overwintering habitat. We found the relative importance of each factor for a given species could be related to its ecology and adult size. The three large-bodied migratory species, least cisco ( Coregonus sardinella ), broad whitefish ( Coregonus nasus ) and arctic grayling ( Thymallus arcticus ), were influenced by factors associated with the likelihood of fish recolonising lakes, including whether the lakes had a stream connection. Of the large-bodied species, least cisco had the highest likelihood of occupancy (0.52 ± 0.05) and models provided evidence that least cisco exhibit both migratory and resident forms. Models for small-bodied fish differed among species, indicating different niches. Ninespine stickleback ( Pungitius pungitius ) were the most widespread and ubiquitous of the species captured (occupancy probability = 0.97 ± 0.01); they were captured in lakes that freeze to the bottom, suggesting that they disperse widely and rapidly after the spring freshet, including colonisation of sink habitats. Alaska blackfish ( Dallia pectoralis ) had a lower occupancy (occupancy probability = 0.76 ± 0.05) with a distribution that reflected tolerance to harsh conditions. Slimy sculpin ( Cottus cognatus ) had an occupancy probability of 0.23 ± 0.06, with a distribution indicating its marine origin. Based on these patterns, we propose an overall model of primary controls on the distribution of fish on the Arctic Coastal Plain of Alaska. Harsh conditions, including lake freezing, limit occupancy in winter through extinction events while lake occupancy in spring and summer is driven by directional migration (large-bodied species) and undirected dispersal (small-bodied species).

Alaska↗

Ecological tracers reveal resource convergence among prey fish species in a large lake ecosystem

1. We measured stable isotopes of carbon (δ 13 C) and nitrogen (δ 15 N) and fatty acid profiles in Lake Ontario alewife ( Alosa pseudoharengus ), rainbow smelt ( Osmerus mordax ), slimy sculpin ( Cottus cognatus ) and round goby ( Neogobius melanostomus ) collected from 1982 to 2008 to investigate how temporal variability in these ecological tracers can relate to ecosystem-level changes associated with the establishment of highly invasive dreissenid mussels. 2. Prey fish δ 15 N values remained relatively constant, with only slimy sculpin exhibiting a temporal increase in δ 15 N. In contrast, δ 13 C values for alewife, rainbow smelt and, especially, slimy sculpin became less negative over time and were consistent with the benthification of the Lake Ontario food web associated with dreissenids. 3. Principal components analysis revealed higher contributions of 14:0 and 16:1n-7 fatty acids and increasingly negative δ 13 C values in older samples in agreement with the greater historical importance of pelagic production for alewife, rainbow smelt and slimy sculpin. 4. Temporal declines in fatty acid unsaturation indices and Σn-3/Σn-6 ratios, and also increased 24:0/14:0 ratios for alewife, rainbow smelt and slimy sculpin, indicated the increasing importance of nearshore production pathways for more recently collected fish and resulted in values more similar to those for round goby. 5. These results indicate a temporal convergence of the food niche, whereas food partitioning has historically supported the coexistence of prey fish species in Lake Ontario. This convergence is consistent with changes in food-web processes associated with the invasion of dreissenid mussels.

Lake Ontario↗

U.S. Geological Survey Chesapeake science strategy, 2015-2025—Informing ecosystem management of America’s largest estuary

Executive Summary The U.S. Geological Survey (USGS) has the critical role of providing scientific information to improve the understanding and management of the Chesapeake Bay ecosystem. The USGS works with Federal, State, and academic science partners to provide research and monitoring, and communicate results of these activities to enhance ecosystem management for both the Chesapeake and other National ecosystems. The USGS Chesapeake Science Strategy was prepared to guide science activities to address the Chesapeake Bay Watershed Agreement (2014–2025), to support the Department of the Interior (DOI) involvement in the Bay restoration efforts, and align with the USGS Mission Area (MA) Science strategies. The Chesapeake Bay is our Nation’s largest estuary, and provides critical goods and services to the people, fish, and wildlife that use the 64,000-square-mile watershed. The Chesapeake Bay watershed contains over 3,600 species of fish, wildlife, and plants and provides spawning grounds for many ecologically and economically important species including striped bass and blue crabs. The Bay watershed lies in the heart of the Atlantic Flyway and has 29 species of waterfowl, about 1 million of which winter in the region. The size of the Chesapeake seafood harvest is third in the Nation, only behind the Atlantic and Pacific Oceans. Along with agricultural production, tourism, and recreation, the estimated economic value of the services from the Chesapeake Bay watershed is about $100 billion annually. However, the health of the Bay ecosystem began to decline at the beginning of the 20th century due to overfishing and increasing human population and associated land change. The Chesapeake Bay Program (CBP) is the Federal-State cooperative effort that started in 1983 to restore the Bay and watershed. Given the ecological and economic importance of the Chesapeake ecosystem, President Obama issued an Executive Order (EO) in 2009 for increased Federal leadership in the CBP to enhance the pace of restoration, and the supporting strategy was released in 2010. The EO directed the Federal Government, including the U.S. Department of the Interior (DOI), represented by the National Park Service (NPS), the U.S. Fish & Wildlife Service (FWS), and the USGS, to expand its efforts and increase leadership to restore the Bay and its watershed. The USGS and other Federal agencies expanded their activities in 2011 to meet the President’s Chesapeake EO. Since the EO was released, there have been several important changes in the USGS, DOI, and the CBP including: (1) the Chesapeake Bay Watershed Agreement, (2) increased DOI leadership in the CBP, and (3) the release of the USGS MA science strategies. The EO strategy served as a foundation for the Chesapeake Bay Watershed Agreement that was signed in 2014 by the CBP Partners, and has goals and outcomes to be met by 2025. The USGS developed the Chesapeake Science Strategy to guide our activities to address the Chesapeake Bay Watershed Agreement, DOI leadership in the CBP, and USGS MA strategies. Improving the understanding of fish and wildlife population and health, and the factors affecting their condition is the emphasis of the Strategy. The science focuses on documenting the critical ecosystem connections in the Chesapeake, and providing implications to enhance decision making for restoration and conservation activities. The revised Strategy has four themes that address 7 of the 10 goals in the Chesapeake Bay Watershed Agreement: Enhance science to support restoration, and conservation of fish, wildlife, and critical habitats. Characterize and explain changes in water quality, and its effect on freshwater and estuarine ecosystems. Assess and forecast effects of climate and land change on ecosystem conditions. Synthesize and provide information to support ecosystem management. The structure and function of biological communities of the Bay and its watershed are extremely complex and are affected by a variety of stressors and conditions. To better define the issues being addressed, the USGS has developed cross-cutting questions that define some of the most important scientific challenges where multiple disciplines and collaborators are needed to address an issue. The initial questions include: How do land and climate changes affect freshwater fish communities, health, and habitats? What are the relations among land use, water quality, contaminants, and the health of fish and wildlife? How are coastal wetlands and their carrying capacity for waterbirds affected by changing climate and land use? How is the water quality of rivers and estuaries responding to restoration actions, and changing land use? What are some of the best opportunities for management actions to benefit multiple restoration outcomes?

Delaware, Maryland, New York, Pennsylvania, Virgin↗

Long‐term regime shifts in xeric ecoregion freshwater fish assemblages due to Anthropogenic and climate stressors

Shifting climate regimes are projected to increase the area of xeric regions and result in more pronounced intermittency across river networks. Given these projected changes, we aim to understand the factors contributing to species persistence under increasing aridity. To investigate how changing flow regimes are related to changes in fish richness and assemblage composition, we compiled data from 1473 xeric stream sites in the United States and Australia. The temporal coverage of this dataset is more than 40 years, from 1980 to 2021. Our focus was on fishes occurring in xeric streams and included 191 species. We compiled climate, hydrologic, and fish species trait data to identify relationships between environmental drivers of species persistence and corresponding characteristics common to species in these systems and traits eliciting the strongest responses to environmental change. Our data show declines in overall precipitation in concert with increasing temperatures over the last several decades. Climatic shifts were accompanied by declines in discharge, increased zero-flow days, and longer durations of no-flow periods. In these same systems, an overall linear decline in fish species richness was observed, but it was not directly correlated with any hydrologic predictors. However, xeric species of conservation concern were small-bodied and occupied lower trophic levels than those not of concern. Listed species were primarily affected by multiple stressors, including habitat degradation and invasive species, compounded by a small geographic range. We thus propose a multiple stressors argument for the declines in xeric fish assemblages, something that may be exacerbated by climate alterations in the future. This work highlights a critical conservation need for xeric fishes and identifies taxa that are especially vulnerable to a combination of anthropogenic stressors and changing climates.

Ecology and Evolution↗

Common carp disrupt ecosystem structure and function through middle-out effects

Middle-out effects or a combination of top-down and bottom-up processes create many theoretical and empirical challenges in the realm of trophic ecology. We propose using specific autecology or species trait (i.e. behavioural) information to help explain and understand trophic dynamics that may involve complicated and non-unidirectional trophic interactions. The common carp ( Cyprinus carpio ) served as our model species for whole-lake observational and experimental studies; four trophic levels were measured to assess common carp-mediated middle-out effects across multiple lakes. We hypothesised that common carp could influence aquatic ecosystems through multiple pathways (i.e. abiotic and biotic foraging, early life feeding, nutrient). Both studies revealed most trophic levels were affected by common carp, highlighting strong middle-out effects likely caused by common carp foraging activities and abiotic influence (i.e. sediment resuspension). The loss of water transparency, submersed vegetation and a shift in zooplankton dynamics were the strongest effects. Trophic levels furthest from direct pathway effects were also affected (fish life history traits). The present study demonstrates that common carp can exert substantial effects on ecosystem structure and function. Species capable of middle-out effects can greatly modify communities through a variety of available pathways and are not confined to traditional top-down or bottom-up processes.

Marine and Freshwater Research↗

The influence of seine capture efficiency on fish abundance estimates in the upper Mississippi River

The effects of season, presence of vegetation, and time of day on seine capture efficiency for fish were evaluated using test enclosures in the upper Mississippi River. Overall capture efficiency of the seine haul was 49% (53% during the day and 43% at night). During daytime tests, the efficiency ranged from 39% to 74% but did not differ statistically between sites or among dates. At night, the efficiency was higher at the vegetated than at the nonvegetated site (55% vs 32%) and declined through time from 56% in May to 28% in October. Although susceptibility to capture differed among taxa, we could not predict either total catch efficiency or efficiency within a given taxon for a given sample. Adjustment of catch data with various estimates of efficiency reduced the mean absolute error for all sampling dates from 51% to 24%, but the error of the adjusted data still ranged from -58% to +54% on any given sampling date. These results indicate that it is difficult to make accurate adjustment of catch data to compensate for gear bias in studies of seasonal habitat use.

Journal of Freshwater Ecology↗

Effects of sea lamprey substrate modification and carcass nutrients on macroinvertebrate assemblages in a small Atlantic coastal stream

Aquatic macroinvertebrates respond to patch dynamics arising from interactions of physical and chemical disturbances across space and time. Anadromous fish, such as sea lamprey, Petromyzon marinus , migrate from the ocean and alter physical and chemical properties of recipient spawning streams. Sea lamprey disturb stream benthos physically through nest construction and spawning, and enrich food webs through nutrient deposition from decomposing carcasses. Sea lamprey spawning nests support greater macroinvertebrate abundance than adjacent reference areas, but concurrent effects of stream bed modification and nutrient supplementation have not been examined sequentially. We added carcasses and cleared substrate experimentally to mimic the physical disturbance and nutrient enrichment associated with lamprey spawning, and characterized effects on macroinvertebrate assemblage structure. We found that areas receiving cleared substrate and carcass nutrients were colonized largely by Simuliidae compared to upstream and downstream control areas that were colonized largely by Hydropsychidae, Philopotamidae, and Chironomidae. Environmental factors such as stream flow likely shape assemblages by physically constraining macroinvertebrate establishment and feeding. Our results indicate potential changes in macroinvertebrate assemblages from the physical and chemical changes to streams brought by spawning populations of sea lamprey.

Maine↗

Bayesian change point analysis of abundance trends for pelagic fishes in the upper San Francisco Estuary

We examined trends in abundance of four pelagic fish species (delta smelt, longfin smelt, striped bass, and threadfin shad) in the upper San Francisco Estuary, California, USA, over 40 years using Bayesian change point models. Change point models identify times of abrupt or unusual changes in absolute abundance (step changes) or in rates of change in abundance (trend changes). We coupled Bayesian model selection with linear regression splines to identify biotic or abiotic covariates with the strongest associations with abundances of each species. We then refitted change point models conditional on the selected covariates to explore whether those covariates could explain statistical trends or change points in species abundances. We also fitted a multispecies change point model that identified change points common to all species. All models included hierarchical structures to model data uncertainties, including observation errors and missing covariate values. There were step declines in abundances of all four species in the early 2000s, with a likely common decline in 2002. Abiotic variables, including water clarity, position of the 2‰ isohaline (X2), and the volume of freshwater exported from the estuary, explained some variation in species' abundances over the time series, but no selected covariates could explain statistically the post-2000 change points for any species.

California↗

A technique for estimating the accuracy of fish locations identified by radiotelemetry

Radiotelemetry is a useful tool to describe habitat use by fish, but studies may inaccurately describe microhabitat use due to failure to account for errors when identifying fish locations. We developed a technique that identifies the extent of location errors of a hand-held radiotelemetry system. The ranges of location errors were determined among different observers, between land and water, and at an array of distances (5—125 m) between transmitters and receivers. No significant differences occurred among three observers at distances of 100 m or less or between transmitters on land or in water. Location error increased significantly with distance between transmitter and receiver; mean error was 0.5 m at 5 m and 4.5 m at 100 m. The 95th percentile of location errors was 1.5 m at 5 m and 10.5 m at 100 m. The number of trials needed to define location errors within 20% of the true mean ( P ≤ 0.05) was 109 at 5 m and 46 at 100 m. Determination of location error with radiotelemetry equipment can be conducted by two people on land with a relatively small amount of effort when the results are to be applied to relatively shallow waters.

Journal of Freshwater Ecology↗