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Predicting seabed burial of cylinders by wave-induced scour: Application to the sandy inner shelf off Florida and Massachusetts

A simple parameterized model for wave-induced burial of mine-like cylinders as a function of grain-size, time-varying, wave orbital velocity and mine diameter was implemented and assessed against results from inert instrumented mines placed off the Indian Rocks Beach (IRB, FL), and off the Martha's Vineyard Coastal Observatory (MVCO, Edgartown, MA). The steady flow scour parameters provided by Whitehouse (1998) for self-settling cylinders worked well for predicting burial by depth below the ambient seabed for O (0.5 m) diameter mines in fine sand at both sites. By including or excluding scour pit infilling, a range of percent burial by surface area was predicted that was also consistent with observations. Rapid scour pit infilling was often seen at MVCO but never at IRB, suggesting that the environmental presence of fine sediment plays a key role in promoting infilling. Overprediction of mine scour in coarse sand was corrected by assuming a mine within a field of large ripples buries only until it generates no more turbulence than that produced by surrounding bedforms. The feasibility of using a regional wave model to predict mine burial in both hindcast and real-time forecast mode was tested using the National Oceanic and Atmospheric Administration (NOAA, Washington, DC) WaveWatch 3 (WW3) model. Hindcast waves were adequate for useful operational forcing of mine burial predictions, but five-day wave forecasts introduced large errors. This investigation was part of a larger effort to develop simple yet reliable predictions of mine burial suitable for addressing the operational needs of the U.S. Navy. ?? 2007 IEEE.

IEEE Journal of Oceanic Engineering↗

Leaf optical property changes associated with the occurrence of Spartina alterniflora dieback in Coastal Louisiana related to remote sensing mapping

In order to provide a remote sensing solution that would detect both the initial onset and monitor the early, as well as, the later stages of impact progression, changes in live leaf optical properties were compared along transects spanning impacted coastal Louisiana marsh sites. Green and red edge reflectance trends generally represented the early stages and fairly well the later stages of dieback progression, while blue and red reflectance and absorption trends represented the later stages of marsh impact that were most closely related to visible signs of marsh impact. Leaf reflectance in the near infrared (NIR) was not compatible with visual reflectance trends and did not co-vary with derived indicators of leaf water content, and thereby, water stress. Predicted from reflectance ratios, carotene tended to remain constant or increase relative to chlorophyll following noted changes in stressed plants at the two least impacted sites, while the pigments co-varied at the two most impacted sites. As an operational solution most amenable for satellite remote sensing, the NIR /red ratio followed blue and red reflectance trends while the NIR /green ratio mimicked the green and red edge reflectance trends indicating impact onset and progression, as well as, generally portraying blue and red reflectance trends indicating later stages of impact. The NIR/ green ratio magnitude and range generally increased from the most to least impacted site providing a convenient method to detect dieback onset and monitor dieback progression. This research demonstrated that remote sensing mapping at these sites could offer a more accurate perception of dieback severity distribution than offered by determinations relying on visible indicators of marsh changes.

Louisiana↗

Reinterpreting the Bruun Rule in the context of equilibrium shoreline models

Long-term (>decades) coastal recession due to sea-level rise (SLR) has been estimated using the Bruun Rule for nearly six decades. Equilibrium-based shoreline models have been shown to skillfully predict short-term wave-driven shoreline change on time scales of hours to decades. Both the Bruun Rule and equilibrium shoreline models rely on the equilibrium beach theory, which states that the beach profile shape equilibrates with its local wave and sea-level conditions. Integrating these two models into a unified framework can improve our understanding and predictive skill of future shoreline behavior. However, given that both models account for wave action, but over different time scales, a critical re-examination of the SLR-driven recession process is needed. We present a novel physical interpretation of the beach response to sea-level rise, identifying two main contributing processes: passive flooding and increased wave-driven erosion efficiency. Using this new concept, we analyze the integration of SLR-driven recession into equilibrium shoreline models and, with an idealized test case, show that the physical mechanisms underpinning the Bruun Rule are explicitly described within our integrated model. Finally, we discuss the possible advantages of integrating SLR-driven recession models within equilibrium-based models with dynamic feedbacks and the broader implications for coupling with hybrid shoreline models.

Journal of Marine Science and Engineering↗

Canopy reflectance related to marsh dieback onset and progression in Coastal Louisiana

In this study, we extended previous work linking leaf spectral changes, dieback onset, and progression of Spartina alterniflora marshes to changes in site-specific canopy reflectance spectra. First, we obtained canopy reflectance spectra (approximately 20 m ground resolution) from the marsh sites occupied during the leaf spectral analyses and from additional sites exhibiting visual signs of dieback. Subsequently, the canopy spectra were analyzed at two spectral scales: the first scale corresponded to whole-spectra sensors, such as the NASA Earth Observing-1 (EO-1) Hyperion, and the second scale corresponded to broadband spectral sensors, such as the EO-1 Advanced Land Imager and the Landsat Enhanced Thematic Mapper. In the whole-spectra analysis, spectral indicators were generated from the whole canopy spectra (about 400 nm to 1,000 nm) by extracting typical dead and healthy marsh spectra, and subsequently using them to determine the percent composition of all canopy reflectance spectra. Percent compositions were then used to classify canopy spectra at each field site into groups exhibiting similar levels of dieback progression ranging from relatively healthy to completely dead. In the broadband reflectance analysis, blue, green, red, red-edge, and near infrared (NIR) spectral bands and NIR/green and NIR/red transforms were extracted from the canopy spectra. Spectral band and band transform indicators of marsh dieback and progression were generated by relating them to marsh status indicators derived from classifications of the 35 mm slides collected at the same time as the canopy reflectance recordings. The whole spectra and broadband spectral indicators were both able to distinguish (a) healthy marsh, (b) live marsh impacted by dieback, and (c) dead marsh, and they both provided some discrimination of dieback progression. Whole-spectra resolution sensors like the EO-1 Hyperion, however, offered an enhanced ability to categorize dieback progression.

Louisiana↗

Tidal variation in cohesive sediment distribution in an idealized, partially-mixed estuary

Particle settling velocity and erodibility are key factors that govern the transport of sediment through coastal environments including estuaries. These are difficult to parameterize in models that represent mud, whose properties can change in response to many factors, including tidally varying suspended sediment concentration (SSC) and shear stress. Using the COAWST (Coupled Ocean-Atmosphere-Wave-Sediment Transport) model framework, we implemented bed consolidation, sediment-induced stratification, and flocculation formulations within an idealized two-dimensional domain that represented the longitudinal dimension of a micro-tidal, muddy, partially mixed estuary. Within the Estuarine Turbidity Maximum (ETM), SSC and median floc diameter varied by a factor of four over the tidal cycle. Downstream of the ETM, the median floc size and SSC were several times smaller and showed less tidal variation (~20% or less). The suspended floc distributions only reached an equilibrium size as a function of SSC and shear in the ETM at peak tidal flow. In general, flocculation increased particle size, which reduced SSC by half in the ETM through increased settling velocity. Consolidation also limited SSC by reduced resuspension, which then limited floc growth through reduced SSC by half outside of the ETM. Sediment-induced stratification had negligible effects in the parameter space examined. Efforts to lessen the computation cost of the flocculation routine by reducing the number of size classes proved difficult; floc size distribution and SSC were sensitive to specification of size classes by factors of 60% and 300%, respectively.

Virginia↗

Geohydrology and water quality of stratified-drift aquifers in the lower Merrimack and coastal river basins, southeastern New Hampshire

Communities in the lower Merrimack River basin and coastal river basins of southeastern New Hampshire are experiencing increased demands for water because of a rapid increase in population. The population in 1987 was 225,495 and is expected to increase by 30 percent during the next decade. As of 1987, five towns used the stratified-drift aquifers for municipal supply and withdrew an estimated 6 million gallons per day. Four towns used the bedrock aquifer for municipal supply and withdrew an average of 1 .6 million gallons per day. Stratified-drift deposits cover 78 of the 327 square miles of the study area. These deposits are generally less than 10 square miles in areal extent, and their saturated thickness ranges front less than 20 feet to as much as 100 feet. Transmissivity exceeds 4,000 square feet per day in several locations. Stratified-drift aquifers in the eastern part are predominantly small ice-contact deposits surrounded by marine sediments or till of low hydraulic conductivity. Stratified-drift aquifers in the western part consist of ice-contact and proglacial deposits that are large in areal extent and are commonly in contact with surface-water bodies. Five stratified-drift aquifers, in the towns of Derry, Windham, Kingston, North Hampton, and Greenland, have the greatest potential to supply additional amounts of water. Potential yields and contributing areas of hypothetical supply wells were estimated for an aquifer in Windham near Cobbetts Pond and for an aquifer in Kingston along the Powwow River by use of a method analogous to superposition in conjunction with a numerical ground-waterflow model. The potential yield is estimated to be 0 .6 million gallons per day for the Windham-Cobbetts Pond aquifer and 4 .0 million gallons per day for the Kingston-Powwow River aquifer. Contributing recharge area for supply wells is estimated to be 1.6 square miles in the Windham-Cobbetts Pond aquifer and 4.9 square miles in the Kingston-Powwow River aquifer. Analyses of water samples from 30 wells indicate that the water quality in the basins studied is generally suitable for drinking and other domestic purposes. Concentrations of iron and manganese exceeded the U.S. Environmental Protection Agency's (USEPA) and the New Hampshire Water Supply Engineering Bureau's secondary maximum contaminant levels for drinking water in 20 samples. With one exception, concentrations of volatile organic compounds at all wells sampled met New Hampshire Water Supply and Engineering Bureau's drinking-water standards. At one well, trichloroethylene was detected at a concentration of 5.7 micrograms per liter. Ground-water contamination has been detected at several hazardous-waste sites in the study area. Currently, 5 sites are on the USEPA's National Priority List of superfund sites, 10 sites are Resource Conservation and Recovery Act of 1976 sites, and 1 site is a Department of Defense hazardous-waste site of stratigraphic layers is a product of a material's density and the velocity at which sound travels through that material. The reflected signals return to the hydrophones at the water surface and are then filtered, amplified, and displayed graphically on the chart recorder to allow interpretation of aquifer stratigraphy and bedrock depths. Lithologic data from nearby wells and test holes were used as control points to check the interpretation of the reflection profiles. Test drilling was done at 66 locations (pls. 1-3) to determine sediment grain size, stratigraphy, depth to water table, depth to bedrock, and ground water quality. A 6-inch-diameter, hollow-stem auger was used for test drilling. Split-spoon samples of subsurface materials collected at specific depths were used to evaluate the grain-size characteristics and identify the stratigraphic sequence of materials comprising the aquifers. Thirty-eight test holes cased with a 2-inch-diameter polyvinyl-chloride (PVC) pipe and slotted screens were used to make ground-water-level measurements and collect ground-water-quality samples. Surface-water-discharge measurements were made at 16 sites during low flow when the surface water is primarily ground-water discharge. These low-flow measurements indicate quantities of ground water potentially available from aquifers. Hydraulic conductivities of aquifer materials were estimated from grain-size-distribution data from 61 samples of stratified drift. Transmissivity was estimated from well logs by assigning hydraulic conductivity to specific well-log intervals, multiplying by the saturated thickness of the interval, and summing the results. Additional transmissivity values were obtained from an analysis of specific capacity and aquifer-test data. Long-term aquifer yields and contributing areas to hypothetical supply wells were estimated by application of a method that is analogous to super position and incorporates a ground-water-flow model developed by McDonald and Harbaugh (1988). This method was applied to two aquifers judged to have the best potential for providing additional ground-water supplies. Samples of ground water from 26 test wells and 4 municipal wells were collected in March and August 1987 for analysis of common inorganic, organic, and volatile organic constituents. Methods for collecting and analyzing the samples are described by Fishman and Freidman (1989). The water-quality results from the well samples were used to characterize background water quality in the stratified-drift aquifers.

New Hampshire↗

Development and application of an empirical dune growth model for evaluating barrier island recovery from storms

Coastal zone managers require models that predict barrier island change on decadal time scales to estimate coastal vulnerability, and plan habitat restoration and coastal protection projects. To meet these needs, methods must be available for predicting dune recovery as well as dune erosion. In the present study, an empirical dune growth model (EDGR) was developed to predict the evolution of the primary foredune of a barrier island. Within EDGR, an island is represented as a sum of Gaussian shape functions representing dunes, berms, and the underlying island form. The model evolves the foredune based on estimated terminal dune height and location inputs. EDGR was assessed against observed dune evolution along the western end of Dauphin Island, Alabama over the 10 years following Hurricane Katrina (2005). The root mean square error with EDGR (ranging from 0.18 to 0.74 m over the model domain) was reduced compared to an alternate no-change model (0.69–0.96 m). Hindcasting with EDGR also supports the study of dune evolution processes. At Dauphin Island, results suggest that a low-lying portion of the site was dominated by overwash for ~5 years after Katrina, before approaching their terminal height and becoming growth-limited after 2010. EDGR’s computational efficiency allows dune evolution to be rapidly predicted and enables ensemble predictions to constrain the uncertainty that may result if terminal dune characteristics are unknown. In addition, EDGR can be coupled with an external model for estimating dune erosion and/or the long-term evolution of other subaerial features to allow decadal-scale prediction of barrier island evolution.

Alabama↗

Hydrologic data and groundwater flow simulations in the vicinity of Long Lake, Indiana Dunes National Lakeshore, near Gary, Indiana

The U.S. Geological Survey (USGS) collected data and simulated groundwater flow to increase understanding of the hydrology and the effects of drainage alterations to the water table in the vicinity of Long Lake, near Gary, Indiana. East Long Lake and West Long Lake (collectively known as Long Lake) make up one of the largest interdunal lakes within the Indiana Dunes National Lakeshore. The National Park Service is tasked with preservation and restoration of wetlands in the Indiana Dunes National Lakeshore along the southern shoreline of Lake Michigan. Urban development and engineering have modified drainage and caused changes in the distribution of open water, streams and ditches, and groundwater abundance and flow paths. A better understanding of the effects these modifications have on the hydrologic system in the area will help the National Park Service, the Gary Sanitary District (GSD), and local stakeholders manage and protect the resources within the study area. This study used hydrologic data and steady-state groundwater simulations to estimate directions of groundwater flow and the effects of various engineering controls and climatic conditions on the hydrology near Long Lake. Periods of relatively high and low groundwater levels were examined and simulated by using MODFLOW and companion software. Simulated hydrologic modifications examined the effects of (1) removing the beaver dams in US-12 ditch, (2) discontinuing seepage of water from the filtration pond east of East Long Lake, (3) discontinuing discharge from US-12 ditch to the GSD sewer system, (4) decreasing discharge from US-12 ditch to the GSD sewer system, (5) connecting East Long Lake and West Long Lake, (6) deepening County Line Road ditch, and (7) raising and lowering the water level of Lake Michigan. Results from collected hydrologic data indicate that East Long Lake functioned as an area of groundwater recharge during October 2002 and a “flow-through” lake during March 2011, with the groundwater divide south of US-12. Wetlands to the south of West Long Lake act as points of recharge to the surficial aquifer in both dry- and wet-weather conditions. Among the noteworthy results from a dry-weather groundwater flow model simulation are (1) US-12 ditch does not receive water from East Long Lake or West Long Lake, (2) the filtration pond at the east end of East Long Lake, when active, contributed approximately 10 percent of the total water entering East Long Lake, and (3) County Line Road ditch has little effect on simulated water level. Among the noteworthy results from a wet-weather groundwater flow simulation are (1) US-12 ditch does not receive water from East Long Lake or West Long Lake, (2) when the seepage from the filtration pond to the surficial aquifer is not active, sources of inflow to East Long Lake are restricted to only precipitation (46 percent of total) and inflow from the surficial aquifer (54 percent of total), and (3) County Line Road ditch bisects the groundwater divide and creates two water-table mounds south of US-12. The results from a series of model scenarios simulating certain engineering controls and changes in Lake Michigan levels include the following: (1) The simulated removal of beaver dams in US-12 ditch during a wet-weather simulation increased discharge from the ditch to the Gary Sanitary system by 13 percent. (2) Discontinuation of seepage from the filtration pond east of East Long Lake decreased discharge from US-12 ditch to the Gary Sanitary system by 2.3 percent. (3) Simulated discontinuation of discharge from the US-12 ditch to the GSD sewer system increased the area where the water table was estimated to be above the land surface beyond the inundated area in the initial wet-weather simulation. (4) Simulated modifications to the control structure at the discharge point of US-12 ditch to the GSD sewer system can decrease discharge by as much as 61 percent while increasing the simulated inundated area during dry weather and decrease discharge as much as 6 percent while increasing the simulated inundated area during wet weather. (5) Deepening of County Line Road ditch can decrease the discharge from US-12 ditch by 26 percent during dry weather and 24 percent during wet weather, as well as decrease the extent of flooded areas south and east of the filtration pond near Ogden Dunes. (7) The increase of the Lake Michigan water level to match the historical maximum can increase the discharge from US-12 ditch by 14 percent during dry weather and by 9.6 percent during wet weather. (8) The decrease of the Lake Michigan water level to match the historical minimum can decrease the discharge from US-12 ditch by 7.4 percent during dry weather and by 3.1 percent during wet weather. The results of this study can be used by water-resource managers to understand how surrounding ditches affect water levels in East and West Long Lake and in the surrounding wetlands and residential areas. The groundwater model developed in this study can be applied in the future to answer questions about how alterations to the drainage system in the area will affect water levels in East and West Long Lake and surrounding areas. The modeling methods developed in this study provide a template for other studies of groundwater flow and groundwater/surface-water interactions within the shallow surficial aquifer in northern Indiana, and in similar hydrologic settings that include surficial sand aquifers in coastal settings.

Indiana↗

Analysis and visualization of coastal ocean model data in the cloud

The traditional flow of coastal ocean model data is from High Performance Computing (HPC) centers to the local desktop, or to a file server where just the data needed can be extracted via services such as OPeNDAP. Analysis and visualization is then conducted using local hardware and software. This requires moving large amounts of data across the internet as well as acquiring and maintaining local hardware, software and support personnel. Further, as data sets increase in size, the traditional workflow may not be scalable. Alternatively, recent advances make it possible to move data from HPC to the Cloud and perform interactive, scalable, data-proximate analysis and visualization, with simply a web browser user interface. We use the framework advanced by the NSF-funded Pangeo project, a free, open-source Python system which provides multi-user login via JupyterHub and parallel analysis via Dask, both running in Docker containers orchestrated by Kubernetes. Data is stored in the Zarr format, a Cloud-friendly ndarray format that allows performant extraction of data by anyone without relying on data services like OPeNDAP. Interactive visual exploration of data on massive model grids is made possible by new tools in the Python PyViz ecosystem, which can render maps at screen resolution, dynamically updating on pan and zoom operations. Two example are given: (1) calculating the maximum water level at each grid cell from a 53GB, 720 time step, 9 million node triangular mesh ADCIRC simulation of Hurricane Ike; (2) creating a dashboard for visualizing data from the curvilinear orthogonal COAWST/ROMS forecast model.

Journal of Marine Science and Engineering↗

Monitoring of wave, current, and sediment dynamics along the Chincoteague living shoreline, Virginia

Nature-based features, also called living shorelines, are increasingly applied in coastal protection and restoration. However, the processes and mechanisms (feedbacks and interactions) of wave attenuation, current velocity change, and sediment deposition and erosion along the living shoreline remain unclear, thus limiting the adaptive management of living shoreline restoration projects for coastal shoreline resilience under future storm conditions. In this study, wave, current, and sediment dynamics along the Little Toms Cove living shoreline, Chincoteague National Wildlife Refuge, Virginia, a low wave energy environment, were investigated during a 2-month winter period in 2019 to examine the effects of living shoreline structures on shoreline protection and oyster habitat enhancement. It was found that wave attenuation by the living shoreline structures (oyster castles or constructed oyster reefs) is dependent on water depth, wind speed, wind direction, and local bathymetry. Analysis of observed data indicate that the oyster castles along the Little Toms Cove living shoreline play a limited role in wave attenuation in this low wave energy environment. During the 2-month winter period, wave energy was attenuated by 39.7 percent when oyster castles were emergent or slightly submerged with southwest winds. In contrast, when the oyster castles were fully submerged, wave energy behind the oyster castles increased by 38.6 percent. The construction of oyster castles affected circulation patterns with increase or decrease in velocity at nearshore waters protected by the castles depending on locations of measurements in relation to the oyster castles. Bottom shear stress analysis indicates that tidal currents play a larger role than waves on shoreline and marsh edge erosion along the Little Toms Cove shoreline during the 2 months of field monitoring. The oyster castles protecting the marsh edge and tidal flat from erosion resulted in higher fine sediment concentration in the water column landward of the castles because more sediment was retained in the lee side of the castles. It is important to maximize sediment within the wetlands and adjacent mudflats behind the oyster castles. Erosion from the marsh edge and interior serves as the major source of sediment for this wetland system due to the limited sediment supply in Assateague Channel. Furthermore, it was found that the oyster castles along the Little Toms Cove living shoreline were inundated more than 60 percent of the time, leading to the enhanced oyster habitat as evidenced by suitable velocity (less than 10 centimeters per second) and mean grain size (less than 0.08 millimeters) for oyster feeding and the increased oyster shell density and growth in the intertidal zone protected by the castles than in the control area. More field data (for example, concurrent monitoring of sediment concentration and salinity) over other seasons (for example, summer) could help examine the long term and combined engineering and ecological benefits of living shoreline restoration projects under seasonal and enhanced future storm conditions.

Virginia↗

Assessing the impacts of future climate conditions on the effectiveness of winter cover crops in reducing nitrate loads into the Chesapeake Bay Watershed using SWAT model

Winter cover crops (WCCs) have been widely implemented in the Coastal Plain of the Chesapeake Bay watershed (CBW) due to their high effectiveness at reducing nitrate loads. However, future climate conditions (FCCs) are expected to exacerbate water quality degradation in the CBW by increasing nitrate loads from agriculture. Accordingly, the question remains whether WCCs are sufficient to mitigate increased nutrient loads caused by FCCs. In this study, we assessed the impacts of FCCs on WCC nitrate reduction efficiency on the Coastal Plain of the CBW using Soil and Water Assessment Tool (SWAT) model. Three FCC scenarios (2085 – 2098) were prepared using General Circulation Models (GCMs), considering three Intergovernmnental Panel on Climate Change (IPCC) Special Report on Emissions Scenarios (SRES) greenhouse gas emission scenarios. We also developed six representative WCC implementation scenarios based on the most commonly used planting dates and species of WCCs in this region. Simulation results showed that WCC biomass increased by ~ 58 % under FCC scenarios, due to climate conditions conducive to the WCC growth. Prior to implementing WCCs, annual nitrate loads increased by ~ 43 % under FCC scenarios compared to the baseline scenario (2001 – 2014). When WCCs were planted, annual nitrate loads were substantially reduced by ~ 48 % and WCC nitrate reduction efficiency water ~ 5 % higher under FCC scenarios relative to the baseline. The increase rate of WCC nitrate reduction efficiency varied by FCC scenarios and WCC planting methods. As CO2 concentration was higher and winters were warmer under FCC scenarios, WCCs had greater biomass and therefore showed higher nitrate reduction efficiency. In response to FCC scenarios, the performance of less effective WCC practices (e.g., barley, wheat, and late planting) under the baseline indicated ~ 14 % higher increase rate of nitrate reduction efficiency compared to ones with better effectiveness under the baseline (e.g., rye and early planting), due to warmer temperatures. According to simulation results, WCCs were effective to mitigate nitrate loads accelerated by FCCs and therefore the role of WCCs in mitigating nitrate loads is even more important in the given FCCs.

Chesapeake Bay↗

Hydrogeology and analysis of ground-water-flow system, Sagamore Marsh area, southeastern Massachusetts

A study of the hydrogeology and an analysis of the ground-water-flow system near Sagamore Marsh, southeastern Massachusetts, was undertaken to improve the understanding of the current (1994­ 95) hydrogeologic conditions near the marsh and how the ground-water system might respond to proposed changes in the tidal-stage regime of streams that flood and drain the marsh. Sagamore Marsh is in a coastal area that is bounded to the east by Cape Cod Bay and to the south by the Cape Cod Canal. The regional geology is characterized by deltaic and glaciolacustrine sediments. The sediments consist of gravel, sand, silt, and clay and are part of the Plymouth-Carver regional aquifer system. The glacial sediments are hounded laterally by marine sand, silt, and clay along the coast. The principal aquifer in the area consists of fine to coarse glacial sand and is locally confined by fine-grained glaciolacustrine deposits consisting of silt and sandy clay and fine-grained salt-marsh sediments consisting of peat and clay. The aquifer is underlain by finer grained glaciolacustrine sediments in upland areas and by marine clay along the coast. Shallow ground water discharges primarily along the edge of the marsh, whereas deeper ground water flows beneath the marsh and discharges to Cape Cod Bay. Tidal pulses originating from Cape Cod Bay and from tidal channels in the marsh are rapidly attenuated in the subsurface. Tidal ranges in Cape Cod Bay and in the tidal channels were on the order of 9 and 1.5 feet, respectively, whereas tidal ranges in the ground-water levels were less than 0.2 foot. Tidal pulses measured in the water table beneath a barrier beach between the marsh and Cape Cod Bay were more in phase with tidal pulses from Cape Cod Bay than with tidal pulses from the tidal channels in Sagamore Marsh, whereas tidal pulses in the regional aquifer were more in phase with tidal pulses from the tidal channels. A 5-day aquifer test at a public-supply well adjacent to the marsh gave a transmissivity of the regional aquifer of 9,300 to 10,900 feet squared per day and a hydraulic conductivity of 181 to 213 feet per day, assuming a saturated thickness of the aquifer of 51.3 feet. The regional aquifer became unconfined near the pumped well during the test. The ratio of tidal ranges in the tidal channel to the ranges in the underlying aquifer at two sites (the lower and upper marsh) indicated aquifer diffusivities for the marsh sediments of 380 and 170 feet squared per day; these values correspond to hydraulic conductivities of 2.5 x 10 -3 and 1.7 x 10 -3 feet per day, respectively. The maximum distances from the tidal channel at the lower and upper marsh sites where tidal ranges would exceed 0.01 foot, as calculated from aquifer diffusivities and current (1995) tidal ranges in the tidal channels, were 24.4 and 26.7 feet, respectively. The maximum distances from the tidal channel where tidal pulses in the ground water would exceed 0.01 foot, using potential increased tidal stages resulting from proposed tidal-stage modifications and predicted by the U.S. Army Corps of Engineers, were 37.1 and 42.0 feet, respectively. A numerical model of the marsh and surrounding aquifer system indicated that the contributing area for the supply well adjacent to the marsh, for current (1994) pumping conditions, extends toward Great Herring Pond, about 2 miles northwest (upgradient) of the well, and does not extend beneath the marsh. The model also indicates that the predicted increases in tidal stages in the marsh will have a negligible effect on local ground-water levels.

Massachusetts↗

Restoring marsh elevation in a rapidly subsiding salt marsh by thin-layer deposition of dredged material

Thin-layer deposition of dredged material on coastal marsh by means of high-pressure spray dredging (Jet-Spray??2) technology has been proposed as a mechanism to minimize wetland impacts associated with traditional bucket dredging technologies and to restore soil elevations in deteriorated marshes of the Mississippi River delta. The impact of spray dredging on vegetated marsh and adjacent shallow-water habitat (formerly vegetated marsh that deteriorated to open water) was evaluated in a 0.5-ha Spartina alterniflora-dominated salt marsh in coastal Louisiana. The thickness of dredged sediment deposits was determined from artificial soil marker horizons and soil elevation change was determined from sedimentation-erosion tables (SET) established prior to spraying in both sprayed and reference marshes. The vertical accretion and elevation change measurements were made simultaneously to allow for calculation of shallow (~5 m depth) subsidence (accretion minus elevation change). Measurements made immediately following spraying in July 1996 revealed that stems of S. alterniflora were knocked down by the force of the spray and covered with 23 mm of dredged material. Stems of S. alterniflora soon recovered, and by July 1997 the percent cover of S. alterniflora had increased three-fold over pre-project conditions. Thus, the layer of dredged material was thin enough to allow for survival of the S. alterniflora plants, with no subsequent colonization by plant species typical of higher marsh zones. By February 1998, 62 mm of vertical accretion accumulated at this site, and little indication of disturbance was noted. Although not statistically significant, soil elevation change was greater than accretion on average at both the spray and reference marshes, suggesting that subsurface expansion caused by increased root biomass production and/or pore water storage influence elevation in this marsh region. In the adjacent shallow water pond, 129 mm of sediment was deposited in July 1996 as a result of spraying, and despite initial shallow subsidence and continual erosion through February 1998, water bottom elevation was raised sufficiently to allow S. alterniflora to invade via rhizome growth from the adjacent marsh. Hence, thin-layer deposition of dredged material at this site was effective at restoring and maintaining marsh elevation after 1.5 years. However, if the open water sediment deposits are not soon completely stabilized via further vegetative colonization, erosion may eventually lower elevations to the level where emergent vegetation cannot persist.

Ecological Engineering↗

Simulation of ground-water discharge to Biscayne Bay, southeastern Florida

As part of the Place-Based Studies Program, the U.S. Geological Survey initiated a project in 1996, in cooperation with the U.S. Army Corps of Engineers, to quantify the rates and patterns of submarine ground-water discharge to Biscayne Bay. Project objectives were achieved through field investigations at three sites (Coconut Grove, Deering Estate, and Mowry Canal) along the coastline of Biscayne Bay and through the development and calibration of variable-density, ground-water flow models. Two-dimensional, vertical cross-sectional models were developed for steady-state conditions for the Coconut Grove and Deering Estate transects to quantify local-scale ground-water discharge patterns to Biscayne Bay. A larger regional-scale model was developed in three dimensions to simulate submarine ground-water discharge to the entire bay. The SEAWAT code, which is a combined version of MODFLOW and MT3D, was used to simulate the complex variable-density flow patterns. Field data suggest that ground-water discharge to Biscayne Bay relative to the shoreline is restricted to within 300 meters at Coconut Grove, 600 to 1,000 meters at Deering Estate, and 100 meters at Mowry Canal. The vertical cross-sectional models, which were calibrated to the field data using the assumption of steady state, tend to focus ground-water discharge to within 50 to 200 meters of the shoreline. With homogeneous distributions for aquifer parameters and a constant-concentration boundary for Biscayne Bay, the numerical models could not reproduce the lower ground-water salinities observed beneath the bay, which suggests that further research may be necessary to improve the accuracy of the numerical simulations. Results from the cross-sectional models, which were able to simulate the approximate position of the saltwater interface, suggest that longitudinal dispersivity ranges between 1 and 10 meters, and transverse dispersivity ranges from 0.1 to 1 meter for the Biscayne aquifer. The three-dimensional, regional-scale model was calibrated to ground-water heads, canal baseflow, and the general position of the saltwater interface for nearly a 10-year period from 1989 to 1998. The mean absolute error between observed and simulated head values is 0.15 meter. The mean absolute error between observed and simulated baseflow is 3 x 105 cubic meters per day. The position of the simulated saltwater interface generally matches the position observed in the field, except for areas north of the Miami Canal where the simulated saltwater interface is located about 5 kilometers inland of the observed saltwater interface. Results from the regional-scale model suggest that the average rate of fresh ground-water discharge to Biscayne Bay for the 10-year period (1989-98) is about 2 x 105 cubic meters per day for 100 kilometers of coastline. This simulated discharge rate is about 6 percent of the measured surface-water discharge to Biscayne Bay for the same period. The model also suggests that nearly 100 percent of the fresh ground-water discharge is to the northern half of Biscayne Bay, north of the Cutler Drain Canal. South of the Cutler Drain Canal, coastal lowlands prevent the water table from rising high enough to drive measurable quantities of ground water to Biscayne Bay. Annual variations in sea-level elevation, which can be as large as 0.3 meter, have a substantial effect on rates of ground-water discharge. During 1989-98, simulated rates of ground-water discharge to Biscayne Bay generally are highest when sea level is relatively low.

Florida↗

Evapotranspiration and water balance of an anthropogenic coastal desert wetland: responses to fire, inflows and salinities

Evapotranspiration (ET) and other water balance components were estimated for Cienega de Santa Clara, an anthropogenic brackish wetland in the delta of the Colorado River in Mexico. The marsh is in the Biosphere Reserve of the Upper Gulf of California and Delta of the Colorado River, and supports a high abundance and diversity of wildlife. Over 95% of its water supply originates as agricultural drain water from the USA, sent for disposal in Mexico. This study was conducted from 2009 to 2011, before, during and after a trial run of the Yuma Desalting Plant in the USA, which will divert water from the wetland and replace it with brine from the desalting operation. The goal was to estimate the main components in the water budget to be used in creating management scenarios for this marsh. We used a remote sensing algorithm to estimate ET from meteorological data and Enhanced Vegetation Index values from the Moderate Resolution Imaging Spectrometer (MODIS) sensors on the Terra satellite. ET estimates from the MODIS method were then compared to results from a mass balance of water and salt inflows and outflows over the study period. By both methods, mean annual ET estimates ranged from 2.6 to 3.0 mm d −1 , or 50 to 60% of reference ET (ET o ). Water entered at a mean salinity of 2.6 g L −1 TDS and mean salinity in the wetland was 3.73 g L −1 TDS over the 33 month study period. Over an annual cycle, 54% of inflows supported ET while the rest exited the marsh as outflows; however, in winter when ET was low, up to 90% of the inflows exited the marsh. An analysis of ET estimates over the years 2000–2011 showed that annual ET was proportional to the volume of inflows, but was also markedly stimulated by fires. Spring fires in 2006 and 2011 burned off accumulated thatch, resulting in vigorous growth of new leaves and a 30% increase in peak summer ET compared to non-fire years. Following fires, peak summer ET estimates were equal to ET o , while in non-fire years peak ET was equal to only one-half to two-thirds of ET o . Over annual cycles, estimated ET was always lower than ET o , because T. domingensis is dormant in winter and shades the water surface, reducing direct evaporation. Thus, ET of a Typha marsh is likely to be less than an open water surface under most conditions.

Ecological Engineering↗

Preliminary photointerpretation map of landslide and other surficial deposits of the Mount Hamilton quadrangle and parts of the Mount Boardman and San Jose quadrangles, Alameda and Santa Clara Counties, California

The nine San Francisco Bay region counties lie within a geologically active, young, and dynamic part of the central and northern Coast Ranges of California. Significant movements of the earth's crust are occurring here at the present time, posing numerous problems to urbanization, including some of special concern. Geological processes such as fault movements, earthquakes, land subsidence, landsliding, slow downslope movement of bedrock and surficial materials, coastal and stream erosion, flooding, and sedimentation are all potentially hazardous. Because of these factors, an understanding of the operation of physical processes in the bay region is desirable for harmonious, efficient, and safe land-use planning, particularly now, with greatly expanded pressures for urban growth. This map presents preliminary information about one aspect of the physical environment necessary to sound land-use planning--the nature and distribution of surficial deposits. Because surficial deposits are common and well developed in much of the bay region, it is useful to know how and why they have formed, as well as what properties they possess. When maps like this are used in combination with other types of environmental information, such as data on soils, bedrock geology, slopes, vegetation, climatic variation, seismic response, and hydrology, it should be easier to arrive at sound decisions regarding the physical aspects of land use. The U.S. Geological Survey is studying many of these factors in the bay region and hopes to provide the community with much of the required information as part of its San Francisco Bay Region Study in cooperation with the Department of Housing and Urban Development. The representation of surficial deposits on this map reflects the way in which a geologist, working exclusively with aerial photographs, interpreted the origin of various elements of the present landscape. The deposits shown here have not been examined in the field. However, by viewing overlapping vertical aerial photographs through a stereoscope, the geologist sees a three-dimensional relief model of the ground surface and can study and interpret the origins of landforms with considerable ease. In fact, for mapping surficial deposits, particularly in reconnaissance-type studies, photointerpretation has advantages over both ground observations and laboratory studies of surficial materials. Of course, better information can be provided when all aspects of the study are integrated. These preliminary photointerpretation maps are only the first stage in a detailed study of surficial deposits in the bay region, but they should provide land-use planners with immediately useful information about the regional distribution of landslide and other surficial deposits. This map indicates the dominant surficial processes that have probably been operative by showing the distribution of different types of surficial deposits. Processes such as weathering, erosion, sedimentation, and the slow as well as rapid downslope movement of earth materials have constantly reshaped the land surface in the past and will continue to in the future, although at varying rates. The processes are interrelated to varying degrees. For example, crustal uplift of the Coast Ranges will lead to increased erosion and downcutting by streams that in turn generally results in increased deposition of sediments in river valleys, lakes, and shoreline areas. Older flood planes and river deposits may be eroded, leaving elevated terrace deposits. In addition, downcutting by streams may cause adjacent slopes to become unstable, thereby increasing the possibility of slope failures. Man's activities can alter natural physical processes in many ways. Simple acts such as overwatering a lawn or placing a septic tank drainfield in ground that is marginally stable may weaken the bedrock and surficial materials enough to induce landsliding. Relatively stable areas may be made unstable as a result of construction activities that involve cutting or oversteepening of natural slopes. Engineers, builders, conservationists, and others concerned with land use must evaluate the potential effects of all types of development, and maps that show the nature and distribution of surficial deposits should provide much of the basic information they need. This map, then, shows the cumulative effects of various processes that have yielded surficial deposits up to the time the photographs used for photointerpretation were taken. It does not indicate directly areas where processes will be most active, nor does it show the rate at which they will operate. However, knowledge of the history of geologic events is a key to understanding and predicting the evolution of an area, even where man's activities significantly change the character of the land. Almost all new landslides, for example, occur in areas with a history of landslide activity.

California↗

Use of a Numerical Model to Simulate the Hydrologic System and Transport of Contaminants Near Joint Base Cape Cod, Western Cape Cod, Massachusetts

Historical training and operational activities at Joint Base Cape Cod (JBCC) on western Cape Cod, Massachusetts, have resulted in the release of contaminants into an underlying glacial aquifer that is the sole source of water to the surrounding communities. Remedial systems have been installed to contain and remove contamination from the aquifer. Groundwater withdrawals for public supply are expected to increase as the region continues to urbanize. Increases in water-supply withdrawals and wastewater return flow likely will affect the hydrologic system around JBCC and could affect the transport of any contamination that may remain in the aquifer following remediation of contamination from the JBCC. The U.S. Geological Survey, in cooperation with the Air Force Civil Engineer Center, developed a numerical, steady-state regional model of the Sagamore flow lens on western Cape Cod and evaluated the potential effects of future (2030) groundwater withdrawals on water levels, streamflows, hydraulic gradients, and advective transport near the JBCC. The aquifer consists generally of sandy sediments underlain by impermeable bedrock and is bounded laterally by a freshwater/saltwater interface. Data on the altitude of the bedrock surface, position of the freshwater/saltwater interface, lithology of the aquifer, spatial distribution of recharge, and hydrologic boundaries were incorporated into the three-dimensional, finite-difference groundwater flow model. Some inputs into the numerical model—aquifer properties, leakances, and recharge—are represented as parameters to facilitate estimation of optimal parameter values in an inverse calibration. A hybrid parameterization scheme, with both zones of piecewise constancy and pilot points, is used to represent hydraulic conductivity; other adjustable parameters include recharge, boundary leakance, and porosity. Data on water levels, the distribution of subsurface contamination, and groundwater ages were compiled, evaluated, and used to develop observations of long-term average hydraulic gradients and advective-transport patterns. These observations of steady-state hydrologic conditions were combined with the parameterized groundwater model in an inverse calibration to estimate model parameters that best fit the observations. Current (2010) and future (2030) conditions were simulated in the calibrated model to characterize the groundwater flow system and to determine potential effects of increased groundwater withdrawals on advective-transport patterns at the JBCC. Groundwater flow and advective transport are radially outward from a water-table divide in the northern part of the JBCC; flow diverges from the divide toward all points of the compass. Most groundwater flow and contaminant transport occur in shallow parts of the aquifer. On average, about one-half of the groundwater flux occurs in the shallowest 20 percent of the saturated thickness; shallow flow is even more predominant near streams and lakes. Projected (2030) increases in groundwater withdrawals decrease water levels by a maximum of about 1.2 feet in the northern part of the JBCC; drawdowns exceeding 1 foot generally are limited to areas near the largest increases in withdrawals, such as in the northern part of the JBCC, near Long Pond in Falmouth, and in eastern Barnstable. Streamflow decreases average about 6 percent; the largest decreases are in areas with the largest drawdowns. Changes in hydraulic-gradient directions at the water table exceed 1 degree in about 13 percent of the aquifer, generally near groundwater divides where gradient magnitudes are small and near large groundwater withdrawals. Predictions of advective transport from randomly selected locations at the water table are similar for current (2010) and future (2030) groundwater withdrawals. The results indicate that projected increases in groundwater withdrawals affect water levels and streamflows, but effects on hydraulic gradients and advective transport at the JBCC likely are small. Several underlying assumptions inherent in the model, including observations and weights used in the calibration, representation of local-scale heterogeneity, and simulation of the freshwater/saltwater interface, could affect model calibration and predictions; these assumptions were evaluated with alternative models and alternative inverse calibrations. Eight alternative calibrations were performed in which different, but reasonable, observations and weights were used. The preferred calibrated model had the best overall fit to the observations. Fine-grained silty sediments occur in many parts of the aquifer, and silt lenses can locally affect hydraulic gradients. A set of alternative models in which silts were represented with different correlation distances and hydraulic conductivities indicated that explicitly representing silt lenses could affect model calibration but that the implicit representation of local-scale heterogeneity may be sufficient at the regional scale to represent regional-scale hydraulic gradients. For the coastal boundary, two alternative models representing silty and sandy seabeds and their associated interface positions were developed to test the importance of the assumed coastal-boundary condition. The two alternative models resulted in different predictions of streamflow—streamflows increase with smaller (silty) seabed leakances. However, predictions of advective transport, particularly near the JBCC, generally were similar between the alternative and preferred calibrated models, indicating that the seabed leakance and associated interface position at the coastal boundary does not affect simulations of advective transport in inland parts of the aquifer.

Massachusetts↗

Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon

This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km 2 ]), Trask (451 km 2 ), Wilson (500 km 2 ), Kilchis (169 km 2 ), Miami (94 km 2 ), and Nehalem (2,207 km 2 ) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that: Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m 2 /m]) as mapped from 2009 photographs ranged from 7.1 m 2 /m on the Tillamook River to 27.9 m 2 /m on the Miami River. In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel. Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement. Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time. Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas. A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m 3 ) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m 3 per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m 3 . Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation. Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion. In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period. In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967. The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites. On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions. Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment. Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study. Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile. More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.

Oregon↗