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At least 505 records · Page 28Linked to original sources
USGS2024

Management of tidal wetland restoration and fish in the upper San Francisco Estuary: Where are we now and how do we move forward? A summary of the 2023 Wetland Science Symposium

Tidal wetland restoration to benefit at-risk fish species in the Sacramento-San Joaquin Delta and Suisun marsh has gained momentum over the past decade, much of it in response to mitigation requirements for the State Water Project and Central Valley Project. In fall 2023, the Department of Water Resources and the State Water Contractors convened a symposium, entitled Delta-Suisun Tidal Wetland Restoration Symposium: State of the Science and Future Directions, to discuss the latest wetland restoration research and future directions. The symposium was held 10 years after the 2013 symposium “Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference?”, so served as an opportunity to follow up on the progress that has been made over the past decade. This paper synthesizes the key findings from the 2023 workshop. The paper begins with the historical context of wetland restoration in the Delta and Suisun marsh, then outlines the restoration process as it is currently implemented. It then describes the monitoring of tidal wetlands in terms of their capacity to support fish (capacity), the opportunity fish have to use the habitat (opportunity), and the realized functions provided when fish are actually using the site. Finally, the paper identifies priority science actions to advance our understanding and management of tidal wetland restoration sites. These actions include further research into fish habitat utilization, improved monitoring techniques, and enhanced adaptive management strategies. This list of information needs is intended to inform future monitoring of restoration sites, scientific studies, funding, and prioritization of wetland research.

California↗
USGS1995

Potential hydrologic effects of mining in the Humboldt River Basin, northern Nevada

This report provides a general assessment of effects that the current and potential mining activities during the next 5 years may have on the water resources in each of the 34 hydrographic areas in the Humboldt River Basin of northern Nevada. Nearly 40 active gold mines are operating in the basin; of these, 15 are large-scale, open-pit mines. The potential effects of mining were assessed for seven water-resource characteristics or features at various distances from the mining operations. These characteristics are ground-water levels, springs, perennial streams, shallow ground-water areas, sediment transport, agricultural irrigation, and fish and wildlife habitat. The characteristics and features were evaluated at two distances; local (within 2 miles of the operation) and areal (from 2 to 6 miles away from the operation). Additionally, ground-water levels were evaluated at the regional distances: local (with 2 miles of the operation) and areal (from 2 to 6 miles away from the operation). Additionally, ground-water levels were levels were evaluated at the regional distance (more than 6 miles away from the operation). A numerical ranking scale, ranging from a large change expected to no change expected, was developed for each characteristic and feature. For each hydrographic area in the basin, a single value was assigned for each characteristic at each distance. This value represents the greatest change expected to occur in that hydrographic area. The study results show that the greatest changes are expected in two hydro- graphic areas: Pumpernickel Valley and Kelly Creek Area.

Water-Resources Investigations Report↗
USGS1971

Effects of irrigation on streamflow in the Central Sand Plain of Wisconsin

Development of ground water for irrigation affects streamflow and water levels in the sand-plain area of central Wisconsin. Additional irrigation development may reduce opportunities for water-based recreation by degrading the streams as trout habitat and by lowering lake levels. This study was made to inventory present development of irrigation in the sand-plain area, assess potential future development, and estimate the effects of irrigation on streamflow and ground-water levels. The suitability of land and the availability of ground water for irrigation are dependent, to a large extent, upon the geology of the area. Rocks making up the ground-water reservoir include outwash, morainal deposits, and glacial lake deposits. These deposits are underlain by crystalline rocks and by sandstone, which act as the floor of the ground-water reservoir. Outwash, the main aquifer, supplies water to about 300 irrigation wells and maintains relatively stable flow in the streams draining the area. The saturated thickness of these deposits is more than 100 feet over much of the area and is as much as 180 feet in bedrock valleys. The saturated thickness of the outwash generally is great enough to provide sufficient water for large-scale irrigation in all but two areas --one near the town of Wisconsin Rapids and one near Dorro Couche Mound. Aquifer tests indicate that the permeability of the outwash is quite high, ranging from about 1,000 gpd per square foot to about 3,800 gpd per square foot, Specific capacities of irrigation wells in the area range from 14 to 157 gpm per foot of drawdown. Water use in the sand-plain area is mainly for irrigation and waterbased recreation. Irrigation development began in the area in the late 1940's, and by 1967 about 19,500 acre-feet of water were pumped to irrigate 34,000 acres of potatoes, snap beans, corn, cucumbers, and other crops. About 70 percent of the applied water was lost to evapotranspiration, and about 30 percent was returned to the ground-water reservoir. Irrigation development should continue in the sand plain; future development probably will include improved artificial drainage and land clearing. The hydrology of the sand-plain area was studied from water budgets for seven basins and from water balances for eight types of vegetative cover or land use. During the study period about 16-20 inches of the 28- to 30-inch average annual precipitation were lost to evapotranspiration from different basins in the area, Evapotranspiration from different types of vegetative cover or land use ranged from about 14 inches per year for bare ground to about 25 inches per year from land covered by phreatophytes. Evapotranspiration is about 19 inches from forested land, about 16 inches from grassland and unirrigated row crops, about 19 inches from irrigated beans, and about 22 inches from irrigated potatoes. Variations in evapotranspiration from the different types of vegetative cover result mainly from differences in soil moisture available to the plants. Available soil moisture ranges from about 1 inch for shallow-rooted grasses and row crops to about 3 inches for forest. Most of the precipitation not used by plants or to replenish soil moisture seeps to the water table, and ground-water recharge in the area averages about 12-14 inches per year. However, computed recharge ranged from about 3 inches to about 22 inches during the 1948-67 period, depending upon the amount and seasonal distribution of precipitation. Of the average 12-14 inches of recharge, about lo-13 inches are discharged to the streams draining the area, and about l-2 inches are used by phreatophytes or by irrigated crops. Annual streamflow in the area averages about 11-12 inches per year, and because it is sustained mainly by ground water, its seasonal distribution is fairly uniform, However, streamflow varies seasonally, being highest in the spring, low in the summer, higher

Wisconsin↗
USGS2020

Conservation reliance of a threatened snake on rice agriculture

Conservation-reliant species require perpetual management by humans to persist. But do species that persist largely in human-dominated landscapes actually require conditions maintained by humans? Because most extant populations of giant gartersnakes (Thamnophis gigas) inhabit the highly modified rice agricultural regions of the Sacramento Valley, we sought to evaluate whether giant gartersnakes are indeed a conservation-reliant species dependent on maintenance of rice agriculture and its infrastructure for their continued existence. Specifically, we examined the extent to which giant gartersnakes use rice fields themselves, and whether survival of adult giant gartersnakes was influenced by the amount of rice grown near their home ranges and daily movements. We found that although giant gartersnakes only use rice fields minimally and then only between mid-June and early September, their survival was lower when less rice agriculture was available near the areas they inhabited. Survival was particularly low in early spring, when giant gartersnakes emerge from brumation but rice fields are not yet flooded. The incongruity between the phenology of rice growing and giant gartersnake foraging requirements suggests that although giant gartersnakes are reliant on the rice agroecosystem, rice agriculture is likely suboptimal habitat for giant gartersnakes. Giant gartersnakes’ reliance on the rice agroecosystem challenges the notion of preservation-based conservation, but provides opportunities for win-win scenarios benefitting both rice farmers and giant gartersnakes. Our study highlights that in addition to land use, the timing of land management might be crucial for conservation-reliant species.

Global Ecology and Conservation↗
USGS2009

Northern Prairie Wildlife Research Center

The Northern Prairie Wildlife Research Center (NPWRC) conducts integrated research to fulfill the Department of the Interior's responsibilities to the Nation's natural resources. Located on 600 acres along the James River Valley near Jamestown, North Dakota, the NPWRC develops and disseminates scientific information needed to understand, conserve, and wisely manage the Nation's biological resources. Research emphasis is primarily on midcontinental plant and animal species and ecosystems of the United States. During the center's 40-year history, its scientists have earned an international reputation for leadership and expertise on the biology of waterfowl and grassland birds, wetland ecology and classification, mammalian behavior and ecology, grassland ecosystems, and application of statistics and geographic information systems. To address current science challenges, NPWRC scientists collaborate with researchers from other U.S. Geological Survey centers and disciplines (Biology, Geography, Geology, and Water) and with biologists and managers in the Department of the Interior (DOI), other Federal agencies, State agencies, universities, and nongovernmental organizations. Expanding upon its scientific expertise and leadership, the NPWRC is moving in new directions, including invasive plant species, restoration of native habitats, carbon sequestration and marketing, and ungulate management on DOI lands.

Fact Sheet↗
USGS2002

Environmental setting and water-quality issues of the Mobile River Basin, Alabama, Georgia, Mississippi, and Tennessee

The Mobile River Basin is one of over 50 river basins and aquifer systems being investigated as part of the U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program. This basin is the sixth largest river basin in the United States, and fourth largest in terms of streamflow, encompassing parts of Alabama, Georgia, Mississippi, and Tennessee. Almost two-thirds of the 44,000-square-mile basin is located in Alabama. Extensive water resources of the Mobile River Basin are influenced by an array of natural and cultural factors. These factors impart unique and variable qualities to the streams, rivers, and aquifers providing abundant habitat to sustain the diverse aquatic life in the basin. Data from Federal, State, and local agencies provide a description of the environmental setting of the Mobile River Basin. Environmental data include natural factors such as physiography, geology, soils, climate, hydrology, ecoregions, and aquatic ecology, and human factors such as reservoirs, land use and population change, water use, and water-quality issues. Characterization of the environmental setting is useful for understanding the physical, chemical, and biological characteristics of surface and ground water in the Mobile River Basin and the possible implications of that environmental setting for water quality. The Mobile River Basin encompasses parts of five physiographic provinces. Fifty-six percent of the basin lies within the East Gulf section of the Coastal Plain Physiographic Province. The remaining northeastern part of the basin lies, from west to east, within the Cumberland Plateau section of the Appalachian Plateaus Physiographic Province, the Valley and Ridge Physiographic Province, the Piedmont Physiographic Province, and the Blue Ridge Physiographic Province. Based on the 1991 land-use data, about 70 percent of the basin is forested, while agriculture, including livestock (poultry, cattle, and swine), row crops (cotton, corn, soybeans, sorghum, and wheat), and pasture land accounts for about 26 percent of the study unit. Agricultural land use is concentrated along the Black Prairie Belt district of the Coastal Plain. Urban areas account for only 3 percent of the total land use; however, the areal extent of the metropolitan statistical areas (MSA) may indicate more urban influences. The MSAs include urban areas outside of the city boundaries and can include adjacent counties. Seven MSAs are delineated in the Mobile River Basin, including Montgomery, Mobile, Tuscaloosa, Birmingham, Gadsden, Anniston, and Atlanta. The total population for the Mobile River Basin was about 3,673,100 in 1990. State water-quality agencies have identified numerous causes and sources of water-body impairment in the Mobile River Basin. In 1996, organic enrichment, dissolved oxygen depletion, elevated nutrient concentrations, and siltation were the most frequently cited causes of impairment, affecting the greatest number of river miles. Bacteria, acidic pH, and elevated metal concentrations also were identified as causes of impairment. The sources for impairment varied among river basins, were largely a function of land use, and were attributed primarily to municipal and industrial sources, mining, and agricultural activities.

Water-Resources Investigations Report↗
USGS2016

Efficiency of two-way weirs and prepositioned electrofishing for sampling potamodromous fish migrations

Potamodromy (i.e., migration entirely in freshwater) is a common life history strategy of North American lotic fishes, and efficient sampling methods for potamodromous fishes are needed to formulate conservation and management decisions. Many potamodromous fishes inhabit medium-sized rivers and are mobile during spawning migrations, which complicates sampling with conventional gears (e.g., nets and electrofishing). We compared the efficiency of a passive migration technique (resistance board weirs) and an active technique (prepositioned areal electrofishers; [PAEs]) for sampling migrating potamodromous fishes in Valley River, a southern Appalachian Mountain river, from March through July 2006 and 2007. A total of 35 fish species from 10 families were collected, 32 species by PAE and 19 species by weir. Species richness and diversity were higher for PAE catch, and species dominance (i.e., proportion of assemblage composed of the three most abundant species) was higher for weir catch. Prepositioned areal electrofisher catch by number was considerably higher than weir catch, but biomass was lower for PAE catch. Weir catch decreased following the spawning migration, while PAEs continued to collect fish. Sampling bias associated with water velocity was detected for PAEs, but not weirs, and neither gear demonstrated depth bias in wadeable reaches. Mean fish mortality from PAEs was five times greater than that from weirs. Catch efficiency and composition comparisons indicated that weirs were effective at documenting migration chronology, sampling nocturnal migration, and yielding samples unbiased by water velocity or habitat, with low mortality. Prepositioned areal electrofishers are an appropriate sampling technique for seasonal fish occupancy objectives, while weirs are more suitable for quantitatively describing spawning migrations. Our comparative results may guide fisheries scientists in selecting an appropriate sampling gear and regime for research, monitoring, conservation, and management of potamodromous fishes.

North American Journal of Fisheries Management↗
USGS2002

Residency and movement patterns of wintering dunlin in the Willamette Valley of Oregon

In the winters of 1998–1999 and 1999–2000, we tracked 67 radio-marked Dunlin ( Calidris alpina ) throughout the complex agricultural landscape of the Willamette Valley of Oregon. Individual birds were tracked across 8-week sampling periods and indicated a high degree of regional fidelity throughout the three winter sampling periods. Birds exhibited varied degrees of fidelity to specific wetland sites and were detected at an average of nine different sites. Distances traveled within the region were extensive and greatest during late winter. Females ranged farther from capture sites than males, and movement from capture sites for all birds was greatest during late winter. Mean home-range size (95% minimum convex polygons) of birds was 258.2 ± 44.8 km 2 (SE) and was greatest during late winter. Diurnal roosts were identified as centers of activities and daily movements were most pronounced during crepuscular periods. These data represent the most extensive documentation of winter movements for a shorebird at an inland site. Findings indicate Dunlin were winter residents, and extensive local movements suggest a high degree of functional connectivity of habitats.

Oregon↗
USGS2002

Regional fidelity and movement patterns of wintering killdeer in an agricultural landscape

Killdeer ( Charadrius vociferus ) is a common and widespread North American species for which there are few studies of residency patterns and movements. We quantified fidelity and movement patterns of 24 radio-tagged Killdeer in the Willamette Valley of Oregon during the winter of 1999-2000. Results from telemetry surveys and census efforts revealed that the group monitored was composed of winter residents (63%), winter transients (26%), and year-round residents (11%). Movements were localized with birds detected at an average distance of 5.15 ± 0.91 (SE) km from the site of capture. Mean home range size (95% kernel) was 7.73 ± 3.19 km 2 . However, results also indicated periodic exploratory movements, with some birds detected up to 30 km from marking sites. Overall, individuals exhibited a low degree of fidelity to specific sites and were detected at an average of 11.9 ± 1.1 sites. No differences were found in monthly movement patterns. In almost all cases, year-round residents were more sedentary than winter residents and winter transients. Results indicate a complex regional population structure and highlight the need to consider both migrant and resident birds, as well as seasonal differences in habitat needs and space use requirements, in future conservation planning efforts.

Oregon↗
USGS2010

Channel Maintenance and Flushing Flows for the Klamath River Below Iron Gate Dam, California

The Klamath River is a major river in northern California and southern Oregon. Iron Gate Dam divides the river into the two subunits where there is a significant change in utilization of the river. Downstream of Iron Gate Dam, the river is very important for the propagation of salmon. To address concerns relating to substrate conditions in the mainstem Klamath River below Iron Gate Dam, the Arcata, California, office of the U.S. Fish and Wildlife Service contracted with the U.S. Geological Survey (USGS) to determine flushing flows required to improve and maintain quality spawning and rearing habitats for salmon, and to reduce the abundance of preferred habitats of the polychaete worm suspected of being the intermediate host for Ceratomyxa shasta, a species of bacteria that infects fish. Historically, the river has had the capacity to move sediment just below Iron Gate Reservoir, but there have been periods when the capacity was very low. The results indicate that if the future is more like the pre-1961 period (low transport capacity) than the more recent period, there will be significant sediment issues in the Klamath River below Iron Gate Dam. It seems that during normal or wet years, winter months, and periods of high flow, sediments are flushed either downstream or deposited on higher surfaces. The recent drought conditions during 2000-2005 probably resulted in extensive fine-grained sedimentation along the river, which in turn may have caused increased establishment of aquatic vegetation and increased concentrations of C. shasta. It appears that releases from Iron Gate Dam as far downstream as Seiad Valley are important in maintaining flow conditions to flush the fines and clean the gravels in the river during summer months, or during drought years. Sediment transport studies indicate that supplemental flows during dry or drought conditions may provide some flushing flows in reaches downstream of the dam. For purposes of flushing fine sediments during drought years or dry summer months, flows in the range of 2,500-5,000 cubic feet per second during a period of days may be necessary. Providing these types of flows in a manner similar to a storm pulse would provide the best opportunity to flush the fines and clean some of the gravels given the upper ranges of flows are achieved.

Open-File Report↗
USGS2011

Population fragmentation and inter-ecosystem movements of grizzly bears in Western Canada and the Northern United States

Population fragmentation compromises population viability, reduces a species ability to respond to climate change, and ultimately may reduce biodiversity. We studied the current state and potential causes of fragmentation in grizzly bears over approximately 1,000,000 km 2 of western Canada, the northern United States (US), and southeast Alaska. We compiled much of our data from projects undertaken with a variety of research objectives including population estimation and trend, landscape fragmentation, habitat selection, vital rates, and response to human development. Our primary analytical techniques stemmed from genetic analysis of 3,134 bears, supplemented with radiotelemetry data from 792 bears. We used 15 locus microsatellite data coupled withmeasures of genetic distance, isolation-by-distance (IBD) analysis, analysis of covariance (ANCOVA), linear multiple regression, multi-factorial correspondence analysis (to identify population divisions or fractures with no a priori assumption of group membership), and population-assignment methods to detect individual migrants between immediately adjacent areas. These data corroborated observations of inter-area movements from our telemetry database. In northern areas, we found a spatial genetic pattern of IBD, although there was evidence of natural fragmentation from the rugged heavily glaciated coast mountains of British Columbia (BC) and the Yukon. These results contrasted with the spatial pattern of fragmentation in more southern parts of their distribution. Near the Canada-US border area, we found extensive fragmentation that corresponded to settled mountain valleys andmajor highways. Genetic distances across developed valleys were elevated relative to those across undeveloped valleys in central and northern BC. In disturbed areas, most inter-area movements detected were made by male bears, with few female migrants identified. North-south movements within mountain ranges (Mts) and across BC Highway 3 were more common than east-west movements across settled mountain valleys separating Mts. Our results suggest that relatively distinct subpopulations exist in this region, including the Cabinet, Selkirk South, and the decadesisolated Yellowstone populations. Current movement rates do not appear sufficient to consider the subpopulations we identify along the Canada-US border as 1 inter-breeding unit. Although we detected enough male movement to mediate gene flow, the current low rate of female movement detected among areas is insufficient to provide a demographic rescue effect between areas in the immediate future (0-15 yr). In Alberta, we found fragmentation corresponded to major east-west highways (Highways 3, 11, 16, and 43) and most inter-area movements were made by males. Gene flow and movement rates between Alberta and BC were highest across the Continental Divide south of Highway 1 and north of Highway 16. In the central region between Highways 1 and 11, we found evidence of natural fragmentation associated with the extensive glaciers and icefields along the Continental Divide. The discontinuities that we identified would form appropriate boundaries formanagement units. We related sex-specific movement rates between adjacent areas to several metrics of human use (highway traffic, settlement, and humancaused mortality) to understand the causes of fragmentation. This analysis used data from 1,508 bears sampled over a 161,500-km 2 area in southeastern BC, western Alberta, northern Idaho, and northern Montana during 1979-2007. This area was bisected by numerous human transportation and settlement corridors of varying intensity and complexity. We used multiple linear regression and ANCOVA to document the responses of female and male bears to disturbance. Males and females both demonstrated reduced movement rates with increasing settlement and traffic. However, females reduced their movement rates dramatically when settlement increased to >20% of the fracture zone. At this same

Wildlife Monographs↗
USGS2021

Integrating thermal infrared stream temperature imagery and spatial stream network models to understand natural spatial thermal variability in streams

Under a warmer future climate, thermal refuges could facilitate the persistence of species relying on cold-water habitat. Often these refuges are small and easily missed or smoothed out by averaging in models. Thermal infrared (TIR) imagery can provide empirical water surface temperatures that capture these features at a high spatial resolution (<1 m) and over tens of kilometers. Our study examined how TIR data could be used along with spatial stream network (SSN) models to characterize thermal regimes spatially in the Middle Fork John Day (MFJD) River mainstem (Oregon, USA). We characterized thermal variation in seven TIR longitudinal temperature profiles along the MFJD mainstem and compared them with SSN model predictions of stream temperature (for the same time periods as the TIR profiles). TIR profiles identified reaches of the MFJD mainstem with consistently cooler temperatures across years that were not consistently captured by the SSN prediction models. SSN predictions along the mainstem identified ~80% of the 1-km reach scale temperature warming or cooling trends observed in the TIR profiles. We assessed whether landscape features (e.g., tributary junctions, valley confinement, geomorphic reach classifications) could explain the fine-scale thermal heterogeneity in the TIR profiles (after accounting for the reach-scale temperature variability predicted by the SSN model) by fitting SSN models using the TIR profile observation points. Only the distance to the nearest upstream tributary was identified as a statistically significant landscape feature for explaining some of the thermal variability in the TIR profile data. When combined, TIR data and SSN models provide a data-rich evaluation of stream temperature captured in TIR imagery and a spatially extensive prediction of the network thermal diversity from the outlet to the headwaters.

Oregon↗
USGS2024

Vegetation responses to large dam removal on the Elwha River, Washington, USA

Large dam removal can trigger changes to physical and biological processes that influence vegetation dynamics in former reservoirs, along river corridors downstream of former dams, and at a river’s terminus in deltas and estuaries. We present the first comprehensive review of vegetation response to major fluvial disturbance caused by the world’s largest dam removal. After being in place for nearly a century, two large dams were removed along the Elwha River, Washington, USA, between 2011 and 2014. The exposure, erosion, transport, and deposition of large volumes of sediment and large wood that were impounded behind the dams created new fluvial surfaces where plant colonization and growth have occurred. In the former reservoirs, dam removal exposed ~290 ha of unvegetated sediment distributed on three main landforms: valley walls, high terraces, and dynamic floodplains. In addition to natural revegetation in the former reservoirs, weed control and seeding and planting of desirable plants influenced vegetation trajectories. In early years following dam removal, ~20.5 Mt of trapped sediment were eroded from the former reservoirs and transported downstream. This sediment pulse, in combination with transport of large wood, led to channel widening, an increase in gravel bars, and floodplain deposition. The primary vegetation responses along the river corridor were a reduction in vegetated area associated with channel widening, plant establishment on new gravel bars, increased hydrochory, and altered plant community composition on gravel bars and floodplains. Plant species diversity increased in some river segments. In the delta, sediment deposition led to the creation of ~26.8 ha of new land surfaces and altered the distribution and dynamics of intertidal water bodies. Vegetation colonized ~16.4 ha of new surfaces: mixed pioneer vegetation colonized supratidal beach, river bars, and river mouth bars, and emergent marsh vegetation colonized intertidal aquatic habitats. In addition to the sediment-dominated processes that have created opportunities for plant colonization and growth, biological processes such as restored hydrochory and anadromous fish passage with associated delivery of marine-derived nutrients may influence vegetation dynamics over time. Rapid changes to landforms and vegetation growth were related to the large sediment pulse in the early years following dam removal, and the rate of change is expected to attenuate as the system adjusts to natural flow and sediment regimes.

Washington↗
USGS2021

Applying biodiversity metrics as surrogates to a habitat conservation plan

Unabated urbanization has led to environmental degradation and subsequent biodiversity loss across the globe. As an outcome of unmitigated land use, multi-jurisdictional agencies have developed land use plans that attempt to protect threatened or endangered species across selected areas by which some trade-offs between harm to species and additional conservation approaches are allowed among the partnering organizations. Typical conservation plans can be created to focus on single or multiple species, and although they may protect a species or groups of species, they may not account for biodiversity or its protection across the given area. We applied an approach that clustered deductive habitat models for terrestrial vertebrates into metrics that serve as surrogates for biodiversity and relate to ecosystem services. In order to evaluate this process, we collaborated with the partnering agencies who are creating a Multi-Species Habitat Conservation Plan in southern California and compared it to the entire Mojave Desert Ecoregion. We focused on total terrestrial vertebrate species richness and taxon groupings representing amphibians, birds, mammals, and reptiles, and two special status species using the Normalized Index of Biodiversity (NIB). The conservation planning area had a lower NIB and was less species rich than the Mojave Desert Ecoregion, but the Mojave River riparian corridor had a higher NIB and was more species-rich, and while taxon analysis varied across the geographies, this pattern generally held. Additionally, we analyzed desert tortoise ( Gopherus agassizii ) and desert kit fox ( Vulpes macrotis arsipus ) as umbrella species and determined that both species are associated with increased NIB and large numbers of species for the conservation area. Our process provided the ability to incorporate value-added surrogate information into a formal land use planning process and used a metric, NIB, which allowed comparison of the various planning areas and geographic units. Although this process has been applied to Apple Valley, CA, and other geographies within the U.S., the approach has practical application for other global biodiversity initiatives.

California↗
USGS2017

Design and methods of the Pacific Northwest Stream Quality Assessment (PNSQA), 2015

In 2015, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) project conducted the Pacific Northwest Stream Quality Assessment (PNSQA) to investigate stream quality across the western part of the Pacific Northwest. The goal of the PNSQA was to assess the health of streams in the region by characterizing multiple water-quality factors that are stressors to in-stream aquatic life and by evaluating the relation between these stressors and the condition of biological communities. The effects of urbanization and agriculture on stream quality for the Puget Lowland and Willamette Valley Level III Ecoregions were the focus of this regional study. Findings will help inform the public and policymakers about human and environmental factors that are the most critical in affecting stream quality and, thus, provide insights into possible strategies to protect or improve the health of streams in the region. Land-use data were used in the study to identify and select sites within the region that ranged in levels of urban and agricultural development. A total of 88 sites were selected across the region—69 were on streams that explicitly spanned a range of urban land use in their watersheds, 8 were on streams in agricultural watersheds, and 11 were reference sites with little or no development in their watersheds. Depending on the type of land use, sites were sampled for contaminants, nutrients, and sediment for either a 4- or 10-week period during April, May, and June 2015. This water-quality “index period” was immediately followed with an ecological survey of all sites that included stream habitat, benthic algae, benthic macroinvertebrates, and fish. Additionally, streambed sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing. This report provides a detailed description of the specific study components and methods of the PNSQA, including (1) surveys of stream habitat and aquatic biota, (2) discrete water sampling, (3) deployment of passive polar organic chemical integrative samplers for pesticides and pharmaceuticals, and (4) sampling of streambed sediment. At selected study sites, toxicity testing of streambed sediment, continuous water-quality monitoring, and daily pesticide sampling also were conducted and are described.

Oregon, Washington↗
USGS2023

Assessing Escherichia coli and microbial source tracking markers in the Rio Grande in the South Valley, Albuquerque, New Mexico, 2020–21

The Rio Grande, in southern Albuquerque, New Mexico, is a Clean Water Act Section 303(d) Category 5 impaired reach for Escherichia coli ( E. coli ). The reach is 5 miles in length, extending from Tijeras Arroyo south to the Isleta Pueblo boundary. An evaluation of E. coli and microbial source tracking markers (human-, canine-, and waterfowl-specific sources) was conducted by the U.S. Geological Survey to determine the extent and source of fecal bacteria within the impaired reach of the Rio Grande, primarily during the dry season (November through June) in 2020 and 2021. Samples were collected in the river cross section at three locations within each site and collected during both the dry season and the wet season, thereby providing data over a range of flow conditions to better understand the extent and source of fecal bacteria. Because fecal microorganisms may readily attach to sediments, riverbed material samples were also collected. During the dry season, E. coli concentrations in water were primarily detected below the New Mexico Surface Water Quality Standard of 410 colony forming units per 100 milliliters and mostly human and canine sources were detected. However, approximately 40 percent of the water samples exceeded the Isleta Pueblo water quality standard of 88 colony forming units per 100 milliliters. E. coli concentrations in bed material were detected at low concentrations, and the bed material was a sandy substrate, with little fine-grained material, a suitable habitat that would allow for bacterial growth during the dry season. Significant spatial and temporal differences, where p-values were less than 0.05, were found in water-quality samples for E. coli (seasonal) and the human tracker concentrations (between sites and within a cross section of a site). Given the lack of correlation between discharge and E. coli concentration and the human marker being most prevalent in the study area, the sources of E. coli in the dry season are likely nonpoint sources. The results from this study will help decision makers determine the efficacy of their best management practices and guide new practices to improve water quality in the reach.

New Mexico↗
USGS2022

Effect of restoration on plant greenness and water use in relation to drought in the riparian corridor of the Colorado River delta

Revitalization of the Colorado River delta riparian corridor and increasing riparian plant greenness and water use may be accomplished by added water and restoration efforts to offset declines measured since 2000 by Landsat. We use the two-band Enhanced Vegetation Index (EVI2; a proxy for greenness) and evapotranspiration (ET, mm/day) using EVI2 and potential ET(ETo) from Yuma Valley. We assess if restoration with only 7.5% landcover had an impact on the unrestored reach-level landcover by measuring these two metrics, EVI2 and ET(EVI2) by comparing restored and unrestored areas. A key finding is that over 21-years EVI2 in the unrestored corridor decreased by 23.6% and ET(EVI2) decreased by 32% (0.87 mm/day). Since 2011, the unrestored reaches lost EVI2 (11%) and −0.73 mm/day ET(EVI2) (28%), but restored sites increased in EVI2 (36%) and 0.58 mm/day ET(EVI2) (20%). Water delivered to restored sites increased EVI2 by 33.6% and 1.29 mm/day ET(EVI2) (58%). EVI2 and ET(EVI2) as a function of the Standardized Precipitation Evapotranspiration Index for drought periods highlight that restored and unrestored sites respond differently. Unrestored reaches are in decline; restored sites show increases in EVI2 and ET(EVI2). Restored sites do not have a significant impact on unrestored adjacent area, but smaller surface flows, a greater reliance on directed agricultural return flows, and deliveries of water to active restoration sites have revitalized habitat and increased ecosystem services in the delta.

Colorado River delta↗
USGS2007

Ground-Water Hydrology of the Upper Klamath Basin, Oregon and California

The upper Klamath Basin spans the California-Oregon border from the flank of the Cascade Range eastward to the Basin and Range Province, and encompasses the Klamath River drainage basin above Iron Gate Dam. Most of the basin is semiarid, but the Cascade Range and uplands in the interior and eastern parts of the basin receive on average more than 30 inches of precipitation per year. The basin has several perennial streams with mean annual discharges of hundreds of cubic feet per second, and the Klamath River at Iron Gate Dam, which represents drainage from the entire upper basin, has a mean annual discharge of about 2,100 cubic feet per second. The basin once contained three large lakes: Upper and Lower Klamath Lakes and Tule Lake, each of which covered areas of 100 to 150 square miles, including extensive marginal wetlands. Lower Klamath Lake and Tule Lake have been mostly drained, and the former lake beds are now cultivated. Upper Klamath Lake remains, and is an important source of irrigation water. Much of the wetland surrounding Upper Klamath Lake has been diked and drained, although efforts are underway to restore large areas. Upper Klamath Lake and the remaining parts of Lower Klamath and Tule Lakes provide important wildlife habitat, and parts of each are included in the Klamath Basin National Wildlife Refuges Complex. The upper Klamath Basin has a substantial regional ground-water flow system. The late Tertiary to Quaternary volcanic rocks that underlie the region are generally permeable, with transmissivity estimates ranging from 1,000 to 100,000 feet squared per day, and compose a system of variously interconnected aquifers. Interbedded with the volcanic rocks are late Tertiary sedimentary rocks composed primarily of fine-grained lake sediments and basin-filling deposits. These sedimentary deposits have generally low permeability, are not good aquifers, and probably restrict ground-water movement in some areas. The regional ground-water system is underlain and bounded on the east and west by older Tertiary volcanic and sedimentary rocks that have generally low permeability. Eight regional-scale hydrogeologic units are defined in the upper Klamath Basin on the basis of surficial geology and subsurface data. Ground water flows from recharge areas in the Cascade Range and upland areas in the basin interior and eastern margins toward stream valleys and interior subbasins. Ground water discharge to streams throughout the basin, and most streams have some component of ground water (baseflow). Some streams, however, are predominantly ground-water fed and have relatively constant flows throughout the year. Large amounts of ground water discharges in the Wood River subbasin, the lower Williamson River area, and along the margin of the Cascade Range. Much of the inflow to Upper Klamath Lake can be attributed to ground-water discharge to streams and major spring complexes within a dozen or so miles from the lake. This large component of ground water buffers the lake somewhat from climate cycles. There are also ground-water discharge areas in the eastern parts of the basin, for example in the upper Williamson and Sprague River subbasins and in the Lost River subbasin at Bonanza Springs. Irrigated agriculture is an integral part of the economy of the upper Klamath Basin. Although estimates vary somewhat, roughly 500,000 acres are irrigated in the upper Klamath Basin, about 190,000 acres of which are part of the Bureau of Reclamation Klamath Project. Most of this land is irrigated with surface water. Ground water has been used for many decades to irrigate areas where surface water is not available, for example outside of irrigation districts and stream valleys. Ground water has also been used as a supplemental source of water in areas where surface water supplies are limited and during droughts. Ground water use for irrigation has increased in recent years due to drought and shifts in surface-water allocation from irrigati

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