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USGS2013

Vegetation classification and mapping, Vicksburg National Military Park, Mississippi

Executive Summary The National Park Service (NPS) Gulf Coast Inventory and Monitoring Network, with the support of the National Park Service Vegetation Inventory completed vegetation classification and mapping for Vicksburg National Military Park (VICK), in Warren County, Mississippi, from 2004 to 2010. VICK is one of more than 250 NPS units to be covered by the Vegetation Inventory. Methods and procedures follow those of the NPS Vegetation Inventory as of August, 2012 ( http://science.nature.nps.gov/im/inventory/veg/index.cfm ). Ecologists collected floristic and environmental data from 45 vegetation field plots and classified and described 13 plant community types corresponding to US National Vegetation Classification (USNVC) associations from these data. This classification was used to map 712 hectares (1,698 acres) of Vicksburg National Military Park, in ten map classes corresponding to vegetation associations and two non-vegetated land cover classes, from a digital orthomosaic created from 1:24,000 color infrared aerial photographs and digital elevation model (DEM) data. Methods used to delineate stands varied according to vegetation type and were a combination of incorporating stand boundaries from an existing map, new “heads-up” interpretation and modeling of digital environmental spatial data. A thematic accuracy assessment collected vegetation data from 118 field observations stratified across the vegetation classes. The overall accuracy of the vegetation map was estimated to be 60.5% at the thematic level of USNVC association and 92.4% at the thematic level of USNVC group. Estimates of areas of vegetation types, as adjusted for mapping error, were calculated for all types mapped and/or observed during the thematic accuracy assessment. An important finding of this study is that the composition of the forests of VICK is substantially different from that described by earlier, more qualitative, accounts. Implications of these findings and possible applications of the data for resource monitoring and management are presented. This report summarizes the methods and general results of the Vegetation Inventory for Vicksburg National Military Park. Appendices include descriptions of vegetation types, a field key to the types, a list of plant species, and accuracy assessment contingency tables. This report is supplemented by the project data, which include: spatial database containing map polygon attributes. Geospatial products are in Universal Transverse Mercator (UTM) projection, Zone 15, using the North American Datum of 1983. all field data (plot, observation point, and accuracy assessment point) stored in a Microsoft Access database metadata for all digital products The data and reports produced by this investigation reside at: https://irma.nps.gov/App/ and/or at: http://biology.usgs.gov/npsveg/

Mississippi↗

USGS2024

Control of introduced American bullfrogs and support of Chiricahua leopard frog conservation in southeast Arizona

1. This report summaries field surveys conducted during July 2023 through April 2024 to control introduced American bullfrogs ( Lithobates [ Rana ] catesbeianus ; hereafter bullfrog) and support Chiricahua leopard frog ( Lithobates [ Rana ] chiricahuensis ) conservation in southeast Arizona. We conducted 394 field surveys across 141 sites in Chiricahua leopard frog Recovery Units 1 and 2 during this survey period. 2. During these surveys, we detected bullfrogs at 36 sites and removed a total of 452 bullfrogs. Bullfrog reproduction was only observed during this survey period at sites on private property where we did not have landowner permission to remove bullfrogs. We found bullfrogs and Chiricahua leopard frogs co-occurring at only a single site (Chulo Tank). Only a single bullfrog was present at this site, and it was removed. 3. Within the Cobre Ridge/Recovery Unit 1 region, we detected Chiricahua leopard frogs at 15 sites, with reproductive activity confirmed at two sites. We performed or assisted with Chiricahua leopard frog translocations at five sites. We detected Chiricahua leopard frog overwinter survival at two sites in this region although moribund and dead frogs were observed at one of these two sites. 4. We did not detect Chiricahua leopard frog within our Canelo Hills Buffer Zone or stock tanks along the foothills of the San Rafael Valley. We detected Chiricahua leopard frogs at four sites on the Appleton-Whittell Research Ranch with reproduction documented at two sites. We also removed two adult bullfrogs from a single site. 5. We detected Chiricahua leopard frogs at 17 sites on the Las Cienegas National Conservation Area (LCNCA). While Chiricahua leopard frog reproduction was not confirmed during July–November of 2023, as of 24 April 2025 we detected Chiricahua leopard frog reproduction at three sites. We did detect a moribund Chiricahua leopard frog at Lower Empire Gulch in March 2024. No bullfrogs were detected on the LCNCA and a single adult bullfrog was removed from one site in the Elgin Buffer Zone. 6. We began bullfrog removal efforts at a new eradication site along the Babocomari River on the Babacomari Ranch. This planned four-year eradication project will remove a significant non-urban bullfrog source population that threatens existing Chiricahua leopard frog metapopulations.

Arizona↗

USGS2017

Hydrogeology and simulated groundwater flow and availability in the North Fork Red River aquifer, southwest Oklahoma, 1980–2013

On September 8, 1981, the Oklahoma Water Resources Board established regulatory limits on the maximum annual yield of groundwater (343,042 acre-feet per year) and equal-proportionate-share (EPS) pumping rate (1.0 acre-foot per acre per year) for the North Fork Red River aquifer. The maximum annual yield and EPS were based on a hydrologic investigation that used a numerical groundwater-flow model to evaluate the effects of potential groundwater withdrawals on groundwater availability in the North Fork Red River aquifer. The Oklahoma Water Resources Board is statutorily required (every 20 years) to update the hydrologic investigation on which the maximum annual yield and EPS were based. Because 20 years have elapsed since the final order was issued, the U.S. Geological Survey, in cooperation with the Oklahoma Water Resources Board, conducted an updated hydrologic investigation and evaluated the effects of potential groundwater withdrawals on groundwater flow and availability in the North Fork Red River aquifer in Oklahoma. This report describes a hydrologic investigation of the North Fork Red River aquifer that includes an updated summary of the aquifer hydrogeology. As part of this investigation, groundwater flow and availability were simulated by using a numerical groundwater-flow model. The North Fork Red River aquifer in Beckham, Greer, Jackson, Kiowa, and Roger Mills Counties in Oklahoma is composed of about 777 square miles (497,582 acres) of alluvium and terrace deposits along the North Fork Red River and tributaries, including Sweetwater Creek, Elk Creek, Otter Creek, and Elm Fork Red River. The North Fork Red River is the primary source of surface-water inflow to Lake Altus, which overlies the North Fork Red River aquifer. Lake Altus is a U.S. Bureau of Reclamation reservoir with the primary purpose of supplying irrigation water to the Lugert-Altus Irrigation District. A hydrogeologic framework was developed for the North Fork Red River aquifer and included a definition of the aquifer extent and potentiometric surface, as well as a description of the textural and hydraulic properties of aquifer materials. The hydrogeologic framework was used in the construction of a numerical groundwater-flow model of the North Fork Red River aquifer described in this report. A conceptual model of aquifer inflows and outflows was developed for the North Fork Red River aquifer to constrain the construction and calibration of a numerical groundwater-flow model that reasonably represented the groundwater-flow system. The conceptual-model water budget estimated mean annual inflows to and outflows from the North Fork Red River aquifer for the period 1980–2013 and included a sub-accounting of mean annual inflows and outflows for the portions of the aquifer that were upgradient and downgradient from Lake Altus. The numerical groundwater-flow model simulated the period 1980–2013 and was calibrated to water-table-altitude observations at selected wells, monthly base flow at selected streamgages, net streambed seepage as estimated for the conceptual model, and Lake Altus stage. Groundwater-availability scenarios were performed by using the calibrated numerical groundwater-flow model to (1) estimate the EPS pumping rate that guarantees a minimum 20-, 40-, and 50-year life of the aquifer, (2) quantify the potential effects of projected well withdrawals on groundwater storage over a 50-year period, and (3) simulate the potential effects of a hypothetical (10-year) drought on base flow and groundwater storage. The results of the groundwater-availability scenarios could be used by the Oklahoma Water Resources Board to reevaluate the maximum annual yield of groundwater from the North Fork Red River aquifer. EPS scenarios for the North Fork Red River aquifer were run for periods of 20, 40, and 50 years. The 20-, 40-, and 50-year EPS pumping rates under normal recharge conditions were 0.59, 0.52, and 0.52 acre-foot per acre per year, respectively. Given the 497,582-acre aquifer area, these rates correspond to annual yields of about 294,000, 259,000, and 259,000 acre-feet per year, respectively. Groundwater storage at the end of the 20-year EPS scenario was about 951,000 acre-feet, or about 1,317,000 acre-feet (58 percent) less than the starting EPS scenario storage. This decrease in storage was equivalent to a mean water-level decline of about 22 feet. Most areas of the active alluvium near the North Fork Red River, Elk Creek, and Elm Fork Red River remained partially saturated through the end of the EPS scenario because of streambed seepage. Lake Altus storage was reduced to zero after 6–7 years of EPS pumping in each scenario. Projected 50-year pumping scenarios were used to simulate the effects of selected well withdrawal rates on groundwater storage of the North Fork Red River aquifer and base flows in the North Fork Red River upstream from Lake Altus. The effects of well withdrawals were evaluated by comparing changes in groundwater storage and base flow between four 50-year scenarios using (1) no groundwater pumping, (2) mean pumping rates for the study period (1980–2013), (3) 2013 pumping rates, and (4) increasing demand pumping rates. The increasing demand pumping rates assumed a 20.4-percent increase in pumping over 50 years based on 2010–60 demand projections for southwest Oklahoma. Groundwater storage after 50 years with no pumping was about 2,606,000 acre-feet, or 137,000 acre-feet (5.5 percent) greater than the initial groundwater storage; this groundwater storage increase is equivalent to a mean water-level increase of 2.3 feet. Groundwater storage after 50 years with the mean pumping rate for the study period (1980–2013) was about 2,476,000 acre-feet, or about 7,000 acre-feet (0.3 percent) greater than the initial groundwater storage; this groundwater storage increase is equivalent to a mean water-level increase of 0.1 foot. Groundwater storage at the end of the 50-year period with 2013 pumping rates was about 2,398,000 acre-feet, or about 70,000 acre-feet (2.8 percent) less than the initial storage; this groundwater storage decrease is equivalent to a mean water-level decline of 1.2 feet. Groundwater storage at the end of the 50-year period with increasing demand pumping rates was about 2,361,000 acre-feet, or about 107,000 acre-feet (4.3 percent) less than the initial storage; this groundwater storage decrease is equivalent to a mean water-level decline of 1.8 feet. Mean annual base flow simulated at the Carter streamgage (07301500) on North Fork Red River increased by about 4,000 acre-feet (10 percent) after 50 years with no pumping and decreased by about 5,400 acre-feet (13 percent) after 50 years with increasing demand pumping rates. Mean annual base flow simulated at the North Fork Red River inflow to Lake Altus increased by about 7,400 acre-feet (15 percent) after 50 years with no pumping and decreased by about 5,800 acre-feet (12 percent) after 50 years with increasing demand pumping rates. A hypothetical 10-year drought scenario was used to simulate the effects of a prolonged period of reduced recharge on groundwater storage and Lake Altus stage and storage. Drought effects were quantified by comparing the results of the drought scenario to those of the calibrated numerical model (no drought). To simulate the hypothetical drought, recharge in the calibrated numerical model was reduced by 50 percent during the simulated drought period (1984–1993). Groundwater storage at the end of the drought period was about 2,271,000 acre-feet, or about 426,000 acre-feet (15.8 percent) less than the groundwater storage of the calibrated numerical model. This decrease in groundwater storage is equivalent to a mean water-table-altitude decline of 7.1 feet. At the end of the 10-year hypothetical drought period, base flows at the Sweetwater (07301420), Carter (07301500), Headrick (07305000), and Snyder (07307010) streamgages had decreased by about 37, 61, 44, and 45 percent, respectively. The minimum Lake Altus storage simulated during the drought period was 403 acre-feet, which was a decline of 92 percent from the nondrought storage. Reduced base flows in the North Fork Red River were the primary cause of Lake Altus storage declines.

Oklahoma↗

USGS2021

Connectivity of Mojave Desert tortoise populations—Management implications for maintaining a viable recovery network

Executive Summary The historic distribution of Mojave desert tortoises ( Gopherus agassizii ) was relatively continuous across the range, and the importance of tortoise habitat outside of designated tortoise conservation areas (TCAs) to recovery has long been recognized for its contributions to supporting gene flow between TCAs and to minimizing impacts and edge effects within TCAs. However, connectivity of Mojave desert tortoise populations has become a concern because of recent and proposed development of large tracts of desert tortoise habitat that cross, fragment, and surround designated conservation areas. This paper summarizes the underlying concepts and importance of connectivity for Mojave desert tortoise populations by reviewing current information on connectivity and providing information to managers for maintaining or enhancing desert tortoise population connectivity as they consider future proposals for development and management actions. Maintaining an ecological network for the Mojave desert tortoise, with a system of core habitats (TCAs) connected by linkages, is necessary to support demographically viable populations and long-term gene flow within and between TCAs. There are four points for wildlife and land-management agencies to consider when making decisions that could affect connectivity of Mojave desert tortoise populations (for example, in updating actions in resource management plans or amendments that could help maintain or restore functional connectivity in light of the latest information): Management of all desert tortoise habitat for persistence and connectivity . Desert tortoise populations continue to decline within most TCAs, and it is unlikely that trends are better in populations outside protected areas. Fragmentation exacerbates negative population trends by breaking large continuous populations into smaller isolated populations. Connectivity within large populations can enhance resilience to localized disturbances due to rescue by neighboring individuals. In contrast, smaller fragmented populations are resistant to rescue by their isolation and thus could suffer irreversible declines to extirpation from a variety of threats and stochastic events. Enhanced threat reduction to reverse declines within TCAs and to maintain occupied habitat in the surrounding matrix would help reduce the variability in population growth rates and improve the resilience of protected populations even while implementing efforts to improve connectivity. Each TCA has unique strengths and weaknesses regarding its ability to support minimum sustainable populations based on areal extent and its ability to support population increases based on landscape connection with adjacent populations. Considering how proposed projects (inside or outside of TCAs) affect connectivity and the ability of TCAs to support at least 5,000 adult tortoises (the numerical goal for each TCA) could help managers to maintain the resilience of TCAs to population declines. The same project, in an alternative location, could have very different impacts on local and regional populations. For example, within the habitat matrix surrounding TCAs, narrowly delineated corridors may not allow for natural population dynamics if they do not accommodate overlapping home ranges along most of their widths so that tortoises reside, grow, find mates, and produce offspring that can replace older tortoises. In addition, most habitat outside TCAs may receive more surface disturbance than habitat within TCAs. Therefore, managing the entire remaining matrix of desert tortoise habitat for permeability may be better than delineating fixed corridors. These concepts apply, especially given uncertainty about long-term condition of habitat, within and outside of TCAs under a changing climate. Ultimately, questions such as “ What are the critical linkages that need to be protected ?” could be better framed as “ How can we manage the remaining habitat matrix in ways that sustain ecological processes and habitat suitability for special status species ?” Land-management decisions made in the context of the latter question may be more conducive to maintenance of a functional ecological network. Limitations on landscape-level disturbance across habitat managed for the desert tortoise Clearly delineating habitat linkages and differentiating them from non-delineated areas by the uses that are permitted or prohibited within them by specific management guidelines can help achieve functional connectivity. Such guidelines would be most effective if they considered and accounted for all surface disturbances (for example, temporary disturbances such as fiberoptic lines or off-highway vehicle routes, right-of-ways, utility-scale solar development, urbanization) to the extent possible. A weighted framework that varies with the permanence or severity of the disturbance, and can be additive to quantify cumulative effects, could be useful (Xiong, 2020). For example, minor roads can alter tortoise movements independently of other features (Peaden and others, 2017; Hromada and others, 2020), but if the isolated dirt road is accompanied by a powerline that encourages raven predation (Xiong, 2020), then the two features together may be additive. Ignoring minor or temporary disturbance on the landscape could result in a cumulatively large impact that is not explicitly acknowledged (Goble, 2009); therefore, understanding and quantifying all surface disturbance on a given landscape is prudent. In California, the Bureau of Land Management established 0.1–1.0 percent caps on new surface-disturbance for TCAs and mapped linkages that address the issues described in number 1 of this list. Nevada, Utah, and Arizona currently do not have surface-disturbance limits. Limits comparable to those in the Desert Renewable Energy Conservation Plan (DRECP) would be 0.5 percent within TCAs and 1 percent within the linkages modeled by Averill-Murray and others (2013). Limits in some areas of California within the Desert Renewable Energy Conservation Plan, such as Ivanpah Valley, are more restrictive, at 0.1 percent. Continuity across the state line in Nevada could be achieved with comparable limits in the adjacent portion of Ivanpah Valley, as well as the Greater Trout Canyon Translocation Area and the Stump Springs Regional Augmentation Site. These more restrictive limits would help protect remaining habitat in the major interstate connectivity pathway through Ivanpah Valley and focal areas of population augmentation that provide additional population connectivity along the western flank of the Spring Mountains. In a recent study that analyzed 13 years of desert tortoise monitoring data, nearly all desert tortoise observations were at sites in which 5 percent or less of the surrounding landscape within 1 kilometer was disturbed (Carter and others, 2020a). To help maintain tortoise habitability and permeability across all other non-conservation-designated tortoise habitat, all surface disturbance could be limited to less than 5-percent development per square kilometer because the 5-percent threshold for development is the point at which tortoise occupation drops precipitously (Carter and others, 2020a). However, although individual desert tortoises were observed at development levels up to 5 percent, we do not know the fitness or reproductive characteristics of these individuals. This level of development also may not allow for long-term persistence of healthy populations that are of adequate size needed for demographic or functional connectivity; therefore, a conservative interpretation suggests that, ideally, development could be lower. Lower development levels would be particularly useful in areas within the upper 5th percentile of connectivity values modeled by Gray and others (2019). Reducing ancillary threats in places where connectivity is restricted to narrow strips of habitat, for example, narrow mountain passes or vegetated strips between solar development, could enhance the functionality of these vulnerable linkages. In such areas, maintaining multiple, redundant linkages could further enhance overall connectivity. Minimization of mortality from roads and maximization of passage under roads . Roads pose a significant threat to the long-term persistence of local tortoise populations, and roads of high traffic volume lead to severe population declines, which ultimately fragments populations farther away from the roads. Three points (a.–c.) pertain to reducing direct mortality of tortoises on the many paved roads that cross desert tortoise habitat and to maintaining a minimal level of permeability across these roads: Tortoise-exclusion fencing tied into culverts, underpasses, overpasses, or other passages below roads in desert tortoise habitat, would limit vehicular mortality of tortoises and provide opportunities for movement across the roads. Installation of shade structures on the habitat side of fences installed in areas with narrow population-depletion zones would limit overheating of tortoises that may pace the fence. Passages below highways could be maintained or retrofitted to ensure safe tortoise access, for example, by filling eroded drop-offs or modifying erosion-control features such as rip-rap to make them safer and more passable for tortoises. Wildlife management agencies could work with transportation departments to develop construction standards that are consistent with hydrologic/erosion management goals, while also incorporating a design and materials consistent with tortoise survival and passage and make the standards widely available. The process would be most effective if the status of passages was regularly monitored and built into management plans. Healthy tortoise populations along fenced highways could be supported by ensuring that land inside tortoise-exclusion fences is not so degraded that it leads to degradation of tortoise habitat outside the exclusion areas. For example, severe invasive plant infestations inside a highway exclusion could cause an increase of invasive plants outside the exclusion area and degrade habitat; therefore, invasive plants inside road rights of way could be mown or treated with herbicide to limit their spread into adjacent tortoise habitat and minimize the risk of these plants carrying wildfires into adjacent habitat. Adaptation of management based on new information . Future research will continue to build upon and refine models related to desert tortoise population connectivity and develop new ones. New models could consider landscape levels of development and be constructed such that they share common foundations to support future synthesis efforts. If model development was undertaken in partnership with entities that are responsible for management of desert tortoise habitat, it would facilitate incorporation of current and future modeling results into their land management decisions. There are specific topics that may be clarified with further evaluation: The effects of climate change on desert tortoise habitat, distribution, and population connectivity; The effects of large-scale fires, especially within repeatedly burned habitat, on desert tortoise distribution and population connectivity; The ability of solar energy facilities or similar developments to support tortoise movement and presence by leaving washes intact; leaving native vegetation intact whenever possible, or if not possible, mowing the site, allowing vegetation to re-sprout, and managing weeds; and allowing tortoises to occupy the sites; and The design and frequency of underpasses necessary to maintain functional demographic and genetic connectivity across linear features, like highways.

Arizona, California, Nevada↗

USGS1982

Pacific summary report 2: A revision of Outer Continental Shelf oil and gas activities in the Pacific (Southern California) and their onshore impacts: A summary report, May 1980

The Pacific Outer Continental Shelf (OCS) is an established hydrocarbon-producing region. Oil and gas have been produced from the Santa Barbara Channel (both State and Federal acreage) since 1896. Almost 77,000 barrels of oil are produced from the California Federal OCS each day as of December 1981, and leases on State tidelands produce about 40,000 barrels of oil per day. This highly developed area is, of course, but a small part of the Pacific OCS, which also includes Northern California, Washington, and Oregon. The petroleum industry has expressed interest in exploring frontier areas, and as frontier acreage is offered in future lease sales, exploration, development, and production may move out into deeper water. The technology is currently being developed and tested to allow deepwater exploration. To date, offshore drilling operations have resulted in the delineation of 11 offshore oil and gas fields and 2 gas fields in the Southern California OCS. A recent discovery off Point Arguello, California, may lead to delineation of a new field. Reserve estimates have been made for the known fields in the region. Remaining recoverable reserves are estimated at 787 million barrels of oil and over 1.7 trillion cubic feet of gas as of December 31, 1980. Estimates of undiscovered recoverable resources in the offshore Santa Maria Basin and Southern California OCS are over 3.5 billion barrels of oil and in excess of 5 trillion cubic feet of gas. To date, there have been seven oil and gas lease sales in the Pacific OCS Region. An average of one lease sale per year is scheduled through 1985. Industry interest indicates that the Santa Barbara Channel's potential has not yet been fully explored, and some basins to the south, as well as in the Santa Maria Basin, are now gaining considerable interest. Future exploratory activity in the San Pedro Bay and the Santa Maria Basin is likely to increase. Exploration, development, and production in the Pacific OCS Region are increasing at a moderate pace. Pipelines continue to be the preferred mode of transporting Pacific OCS hydrocarbons to shore. The State and the Federal Governments have expressed a commitment to the use of pipelines where possible and economically feasible. Tankers traveling in the Pacific and entering California ports carry, for the most part, imported oil. The region is active in OCS transportation planning; the Bureau of Land Management works through the Pacific States Regional Technical Working Group Committee. Onshore, the Petroleum Transportation Committee (formerly the Joint Government/Industry Pipeline Working Group) is evaluating a number of transportation scenarios. The nearshore and onshore petroleum processing facilities in the Pacific Region service onshore and offshore oil and gas exploration, development, and production, as well as the international oil market. Many of the onshore facilities have been in operation for years, supporting California's extensive onshore and offshore production. Several new facilities have been proposed, are currently under construction, or have recently opened. Shell Oil opened a crude oil distribution facility near Long Beach in December 1980. Operations began at Union Oil's Mandalay Beach separation and treatment plant in December 1981. The Pacific Offshore Pipeline Company, a subsidiary of the Pacific Lighting Corporation, is planning to build a gas treatment plant at Las Flores Canyon; completion of this project is scheduled for July 1983. It is expected that these new facilities, in addition to the established plants, will be able to accommodate any new OCS production in the near term from previously leased areas.

California↗

USGS2017

Brackish groundwater in the United States

For some parts of the Nation, large-scale development of groundwater has caused decreases in the amount of groundwater that is present in aquifer storage and that discharges to surface-water bodies. Water supply in some areas, particularly in arid and semiarid regions, is not adequate to meet demand, and severe drought is affecting large parts of the United States. Future water demand is projected to heighten the current stress on groundwater resources. This combination of factors has led to concerns about the availability of freshwater to meet domestic, agricultural, industrial, mining, and environmental needs. To ensure the water security of the Nation, currently [2016] untapped water sources may need to be developed. Brackish groundwater is an unconventional water source that may offer a partial solution to current and future water demands. In support of the national census of water resources, the U.S. Geological Survey completed the national brackish groundwater assessment to better understand the occurrence and characteristics of brackish groundwater in the United States as a potential water resource. Analyses completed as part of this assessment relied on previously collected data from multiple sources; no new data were collected. Compiled data included readily available information about groundwater chemistry, horizontal and vertical extents and hydrogeologic characteristics of principal aquifers (regionally extensive aquifers or aquifer systems that have the potential to be used as a source of potable water), and groundwater use. Although these data were obtained from a wide variety of sources, the compiled data are biased toward shallow and fresh groundwater resources; data representing groundwater that is at great depths and is saline were not as readily available. One of the most important contributions of this assessment is the creation of a database containing chemical characteristics and aquifer information for the known areas with brackish groundwater in the United States. Previously published digital data relating to brackish groundwater resources were limited to a small number of State- and regional-level studies. Data sources for this assessment ranged from single publications to large datasets and from local studies to national assessments. Geochemical data included concentrations of dissolved solids, major ions, trace elements, nutrients, and radionuclides as well as physical properties of the water (pH, temperature, and specific conductance). Additionally, the database provides selected well information (location, yield, depth, and contributing aquifer) necessary for evaluating the water resource. The assessment was divided into national-, regional-, and aquifer-scale analyses. National-scale analyses included evaluation of the three-dimensional distribution of observed dissolved-solids concentrations in groundwater, the three-dimensional probability of brackish groundwater occurrence, and the geochemical characteristics of saline (greater than or equal to 1,000 mg/L of dissolved solids) groundwater resources. Regional-scale analyses included a summary of the percentage of observed grid cell volume in the region that was occupied by brackish groundwater within the mixture of air, water, and rock for multiple depth intervals. Aquifer-scale analyses focused primarily on four regions that contained the largest amounts of observed brackish groundwater and included a generalized description of hydrogeologic characteristics from previously published work; the distribution of dissolved-solids concentrations; considerations for developing brackish groundwater resources, including a summary of other chemical characteristics that may limit the use of brackish groundwater and the ability of sampled wells producing brackish groundwater to yield useful amounts of water; and the amount of saline groundwater being used in 2010.

Professional Paper↗

USGS2017

Cooperative Fish and Wildlife Research Units Program—2016 year in review

Summary The Cooperative Fish and Wildlife Research Units (CRU) Program had a productive year in 2016. Despite vacancies in our scientist ranks exceeding 20 percent, our research, training, and teaching portfolio was full and we graduated 93 students and published 398 manuscripts primarily focused on addressing the real conservation challenges of our cooperators. As I’ve stated before, our mission is our legacy: meeting the actionable science needs of our cooperators, providing them technical guidance and assistance in interpreting and applying new advances in science, and developing the future workforce through graduate education and mentoring. Our scientists and the manner in which they approach our mission continue to inspire me. The most rewarding part of my job is meeting and engaging with the students they recruit—the conservation professionals of the future. I cannot help but feel uplifted after discussions with and presentations by these young men and women. Personally, I owe my place in the profession today to the mentoring I received as a CRU student, and today’s CRU scientists have raised the bar. It gives me hope for the future of conservation, and added motivation to see our vacancies filled so that we can expand our portfolio. The National Cooperators’ Coalition has been active and is strategically working to build support on our behalf. Sincere thanks to the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Boone and Crockett Club, the National Association of University Fish and Wildlife Programs, the Wildlife Management Institute, and The Wildlife Society for their efforts and those of their affiliated members. We co-sponsored a workshop at the 2016 North American Wildlife and Natural Resources Conference along with the American Fisheries Society, the Association of Fish and Wildlife Agencies, the Wildlife Management Institute, and The Wildlife Society, titled “Barriers and Bridges in Reconnecting Natural Resources Science and Management.” The workshop was well received and we have been asked to continue the dialogue with a second workshop in 2017. It was evident during the workshop that the CRU is viewed by our cooperators as an important and essential linkage between academia and practitioners. This is testament to the legacy of the CRU Program and the foundation it is built upon. In this Year in Review report, you will find details on staffing, vacancies, research funding, and other pertinent information. You will also see snapshots of CRU projects with information on how results have been or are being applied by cooperators. That is the essence of what we do: science that matters.

Circular↗

USGS2002

Crustal structure of the coastal and marine San Francisco Bay region, California

As of the time of this writing, the San Francisco Bay region is home to about 6.8 million people, ranking fifth among population centers in the United States. Most of these people live on the coastal lands along San Francisco Bay, the Sacramento River delta, and the Pacific coast. The region straddles the tectonic boundary between the Pacific and North American Plates and is crossed by several strands of the San Andreas Fault system. These faults, which are stressed by about 4 cm of relative plate motion each year, pose an obvious seismic hazard. We have many ways to study earthquake faults. Where faults break the land surface, we may learn valuable information needed for hazard assessment, such as cumulative offset, slip rate, and earthquake history. However, many of the major faults in the region are partly submerged beneath San Francisco and Monterey Bays. Although this situation poses problems in gathering observational data for hazard assessment, bay-region waterways provide an opportunity to study faultzone structure by using marine subsurface-imaging techniques, which are easier and cheaper than equivalent studies on land. In 1993, the U.S. Geological Survey (USGS) launched a 5-year project aimed at unearthing the basic science of the submerged San Andreas strike-slip fault system in the San Francisco Bay region with its many interacting strands. Primary project goals were structural, such as to discover how the San Andreas and Hayward Faults are connected or related at depth, to learn how the complex of faults in the San Andreas stepover zone on the Golden Gate platform functions, and to locate previously unknown faults. This volume thus contains mostly structural information about the San Francisco Bay region, much of it gathered through exploratory geophysical experiments. The volume is organized “top down,” from studies in the shallowest crust to the base of the crust. The first three chapters are linked through their use of novel geophysical techniques to study earthquake effects, coseismic slip, and shallow stratigraphy. Kayen and others examine crustal structure at very high resolution and demonstrate the use of ground-penetrating-radar tomography to measure the liquefaction potential of coastal sedimentary deposits. McGann and others use microfossils from drill cores along the San Francisco-Oakland Bay Bridge to determine a more detailed late Pleistocene stratigraphy of San Francisco Bay than was previously available. Geist and Zoback use the historical record of a small local tsunami generated by the great 1906 San Francisco earthquake to model the rupture process of that earthquake. The last four chapters are dedicated to studies of fault related structure of the seismogenic crust in and around the San Andreas Fault system in the San Francisco Bay region. Jachens and others compile an aeromagnetic anomaly map from new high-resolution flights across the bay region. Some of these anomalies mark the positions of offshore faults, and others are offset by faults, providing constraints on cumulative slip. Hart and others concisely summarize the marine seismic data recorded in and around San Francisco Bay, map the coverage, and provide archival information for those interested in acquiring data. The last two chapters present the results of the seismic data that have been analyzed. Bruns and others present their analysis of high-quality intermediate-resolution (~5-km penetration) seismic-reflection data gathered over the complex San Andreas-San Gregorio Fault junction. This junction, which is thought to be where the 1906 San Francisco earthquake originated (see Geist and Zoback, this volume), contains an apparent extensional right stepover in the San Andreas Fault. Finally, Parsons and others review and summarize the results of deep-crustal seismic-reflection experiments and local-earthquake tomographic studies, including previously unpublished data, and provide additional support and discussion for already-published studies. In summary, these studies were carried out in an environment where background information on faults in the San Francisco Bay region was sought. Much of the structural information presented here comes from experiments of a style unlikely to be conducted by the USGS in the near future. Together, the chapters in this volume provide a structural framework for a major part of a complex strike-slip fault system.

California↗

USGS2006

Areal distribution and concentration of contaminants of concern in surficial streambed and lakebed sediments, Lake St. Clair and tributaries, Michigan, 1990-2003

As part of the Lake St. Clair Regional Monitoring Project, the U.S. Geological Survey evaluated data collected from surficial streambed and lakebed sediments in the Lake Erie-Lake St. Clair drainages. This study incorporates data collected from 1990 through 2003 and focuses primarily on the U.S. part of the Lake St. Clair Basin, including Lake St. Clair, the St. Clair River, and tributaries to Lake St. Clair. Comparable data from the Canadian part of the study area are included where available. The data are compiled into 4 chemical classes and consist of 21 compounds. The data are compared to effects-based sediment-quality guidelines, where the Threshold Effect Level and Lowest Effect Level represent concentrations below which adverse effects on biota are not expected and the Probable Effect Level and Severe Effect Level represent concentrations above which adverse effects on biota are expected to be frequent. Maps in the report show the spatial distribution of the sampling locations and illustrate the concentrations relative to the selected sediment-quality guidelines. These maps indicate that sediment samples from certain areas routinely had contaminant concentrations greater than the Threshold Effect Concentration or Lowest Effect Level. These locations are the upper reach of the St. Clair River, the main stem and mouth of the Clinton River, Big Beaver Creek, Red Run, and Paint Creek. Maps also indicated areas that routinely contained sediment contaminant concentrations that were greater than the Probable Effect Concentration or Severe Effect Level. These locations include the upper reach of the St. Clair River, the main stem and mouth of the Clinton River, Red Run, within direct tributaries along Lake St. Clair and in marinas within the lake, and within the Clinton River headwaters in Oakland County. Although most samples collected within Lake St. Clair were from sites adjacent to the mouths of its tributaries, samples analyzed for trace-element concentrations were collected throughout the lake. The distribution of trace-element concentrations corresponded well with the results of a two-dimensional hydrodynamic model of flow patterns from the Clinton River into Lake St. Clair. The model was developed independent from the bed sediment analysis described in this report; yet it showed a zone of deposition for outflow from the Clinton River into Lake St. Clair that corresponded well with the spatial distribution of trace-element concentrations. This zone runs along the western shoreline of Lake St. Clair from L'Anse Creuse Bay to St. Clair Shores, Michigan and is reflected in the samples analyzed for mercury and cadmium. Statistical summaries of the concentration data are presented for most contaminants, and selected statistics are compared to effects-based sediment-quality guidelines. Summaries were not computed for dieldrin, chlordane, hexachlorocyclohexane, lindane, and mirex because insufficient data are available for these contaminants. A statistical comparison showed that the median concentration for hexachlorobenzene, anthracene, benz[ a ]anthracene, chrysene, and pyrene are greater than the Threshold Effect Concentration or Lowest Effect Level. Probable Effect Concentration Quotients provide a mechanism for comparing the concentrations of contaminant mixtures against effects-based biota data. Probable Effect Concentration Quotients were calculated for individual samples and compared to effects-based toxicity ranges. The toxicity-range categories used in this study were nontoxic (quotients < 0.5) and toxic (quotients > 0.5). Of the 546 individual samples for which Probable Effect Concentration Quotients were calculated, 469 (86 percent) were categorized as being nontoxic and 77 (14 percent) were categorized as being toxic. Bed-sediment samples with toxic Probable Effect Concentration Quotients were collected from Paint Creek, Galloway Creek, the main stem of the Clinton River, Big Beaver Creek, Red Run, Clinton River towards the mouth, Lake St. Clair along the western shore, and the St. Clair River near Sarnia.

Michigan↗

USGS2023

Guidelines for calibration of uncrewed aircraft systems imagery

Executive Summary This report outlines quality assurance (QA) processes, including radiometric and geometric calibration guidelines, and guidelines for data acquisition and quality control to be followed by U.S. Geological Survey (USGS) researchers for acquiring and processing uncrewed aircraft systems (UAS) data. These QA processes ensure that UAS data can be used for quantitative analysis and are comparable with other standard geospatial data. Remote sensing data play a critical role in monitoring Earth’s resources. Traditionally, the USGS and Department of the Interior have used well calibrated metric sensors mounted on satellite or aircraft platforms to collect these data. These sensors and platforms are stable, and data have been processed using standard pipelines. These processes ensured that the data are generally consistent with each other and benefitted a diverse group of users. These data are shared among multiple researchers around the world through the internet and other means, using standard formats and metadata. In the last few years, UAS platforms have democratized the remote sensing data collection further, bringing an unparalleled level of control of time, sensors, and processes to individual researchers. Together with the development of cheaper and lighter sensors and relaxation of prohibitions against UAS operation in the National Airspace System by the Federal Aviation Authority, researchers can collect remote sensing data using UAS platforms. Researchers often customize the sensors on these UAS systems based on their specific requirements and use ad hoc processing steps to generate data. A challenge is that these data are often produced by a wide array of sensors and processes that render them potentially inconsistent with each other. Therefore, unlike data collected from metric sensors, UAS-based data are designed to benefit only specific user groups. The data thus generated often lack traceability to known standards, making them difficult to use with other geospatial data. This report provides radiometric and geometric calibration guidelines, as well as guidelines for data acquisition and quality control, that can be followed by USGS researchers in acquiring and processing UAS data. Instead of calibrating sensors, researchers collecting UAS data can focus on calibrating the data. Various radiometric calibration processes are provided, and the two panel empirical line method is highlighted for radiometric calibration. For geometric calibration, USGS and Department of the Interior researchers are experienced in following standard calibration procedures provided by standard UAS data processing software. However, researchers may be aided in paying attention to the tie points and the accuracy of the ground control points used for geometric calibration and data production. The accuracy of ground control points are related to the requirements of the project. The ground control points and the quality of tie points directly contribute to the geometric accuracy of the data, regardless of the ground sample distance of the imagery. The guidelines outlined in this report are intended to ensure that the data are in common units and are quantifiable and comparable with other data. These QA and calibration processes can be critical in ensuring that these datasets are used to the maximum extent possible. Including the calibration parameters (and their uncertainties) as part of metadata can allow for easier data discovery and analytical filters.

Open-File Report↗

USGS2020

Ratios of methylmercury to total mercury in predator and primary consumer insects from Adirondack streams in New York State

Mercury (Hg) is a global pollutant that affects aquatic biota in otherwise pristine settings such as the Adirondack region of New York State. Bioaccumulation of Hg is especially problematic in sensitive landscapes, where inorganic mercury from atmospheric deposition is readily converted, via natural processes, to methylmercury (MeHg), the toxic form that is taken up and biomagnified in aquatic food webs. There is great interest in monitoring MeHg in aquatic biota across these sensitive regions to evaluate responses to changes in Hg emissions. Aquatic insects, such as dragonfly larvae, have great potential as MeHg “biosentinels,” but currently are not widely used for this purpose. An important practical consideration in the use of aquatic insects for MeHg biomonitoring is whether total mercury (THg) is a suitable surrogate for MeHg, which is much more technically challenging and expensive to analyze than is THg. The objective of this project was to assess the suitability of THg as a surrogate for MeHg in stream-dwelling insects. Specifically, existing data on immature aquatic insects from nine Adirondack streams were used to characterize MeHg to THg ratios (i.e., MeHg%), and variation in these ratios (e.g., among sites, seasons, taxa) in predator and primary consumer insects, examine how well THg in different groups tracks measured stream water MeHg (i.e., filtered MeHg; FMeHg), and explore the influence of trophic position (indicated by nitrogen stable isotopes; δ 15 N) on the observed MeHg% patterns. Three broad insect feeding groups were included in this analysis: predators, shredders, and scrapers. Predators had the highest MeHg% (median 94%), and MeHg% did not differ significantly among any of the taxa considered: stoneflies, damselflies, and three families of dragonflies (darners, common skimmers, and clubtails). Darners and common skimmers, the most numerous and abundant predators, were combined for further analyses. Site medians for these “selected dragonflies” were all at least 90% (summer-fall collections) and MeHg% did not differ significantly among sites. The correlation between FMeHg and THg in selected dragonflies was nearly as strong as that of FMeHg and dragonfly MeHg. In contrast, median MeHg% in shredders (northern caddisflies) and scrapers (flathead mayflies), which are both primary consumers, was lower overall (medians 52% and 35%, respectively), more variable, and less-well representative of FMeHg than predators. Stable isotope results indicate that variation in feeding position is an important influence on some of the MeHg% patterns observed in this study. This study’s findings suggest that THg is likely to be a suitable surrogate for MeHg in predatory aquatic insects from Adirondack streams, but do not support the use of THg in primary consumers for regional MeHg monitoring.

New York↗

USGS2017

Morphologic evolution of the wilderness area breach at Fire Island, New York—2012–15

Introduction Hurricane Sandy, which made landfall on October 29, 2012, near Atlantic City, New Jersey, had a significant impact on the coastal system along the south shore of Long Island, New York. A record significant wave height of 9.6 meters (m) was measured at wave buoy 44025 , approximately 48 kilometers offshore of Fire Island, New York. Surge and runup during the storm resulted in extensive beach and dune erosion and breaching of the Fire Island barrier island system at two locations, including a breach that formed within the Otis Pike Fire Island High Dune Wilderness area on the eastern side of Fire Island. The U.S. Geological Survey (USGS) has a long history of conducting morphologic change and processes research at Fire Island. One of the primary objectives of the current research effort is to understand the morphologic evolution of the barrier system on a variety of time scales (from storm scale to decade(s) to century). A number of studies that support the project objectives have been published. Prior to Hurricane Sandy, however, little information was available on specific storm-driven change in this region. The USGS received Hurricane Sandy supplemental funding (project GS2–2B: Linking Coastal Processes and Vulnerability, Fire Island, New York, Regional Study) to enhance existing research efforts at Fire Island. The existing research was greatly expanded to include inner continental shelf mapping and investigations of processes of inner shelf sediment transport; beach and dune response and recovery; and observation, analysis, and modeling of the newly formed breach in the Otis Pike High Dune Wilderness area, herein referred to as the wilderness breach. The breach formed at the site of Old Inlet, which was open from 1763 to 1825. The location of the initial island breaching does not directly correspond with topographic lows of the dunes, but instead the breach formed in the location of a cross-island boardwalk that was destroyed during Hurricane Sandy. From 2013 to November 2015, bathymetric data were collected by the USGS St. Petersburg Coastal and Marine Science Center during three surveys of the breach channel and tidal shoals, and shoreline positions on each side of the breach (also collected by the National Park Service). Additionally, pre-storm topography/bathymetry EAARL–B light detection and ranging (lidar) data were collected by the USGS the day prior to Hurricane Sandy’s landfall. These data serve as a baseline for change analyses during four subsequent periods: June 2013, June 2014, October 2014, and May 2015. The June 2013 single-beam bathymetry data were collected in collaboration with the U.S. Army Corps of Engineers (USACE), using the Lighter Amphibious Resupply Cargo (LARC) vessel, and included the ebb shoal and breach channel. The USGS collected and processed the three additional bathymetric datasets using personal watercraft equipped with single-beam echo sounders and backpack Global Positioning System (GPS) over shallow flood shoals. Eastern and western breach shorelines were surveyed weekly to monthly beginning on November 6, 2012 (by the National Park Service [NPS], and USGS St. Petersburg Coastal and Marine Science Center), with measurements made every few weeks for the first year and every few months after October 2013. The NPS and researchers from Stony Brook University monitored the breach by collecting field data of the breach channel bathymetry, conducting aerial photographic overflights, and performing water-quality analyses (see http://po.msrc.sunysb.edu/GSB/ ). The aerial photography collected and rectified by Stony Brook University is used extensively in our morphologic change description to examine changes to breach shorelines (supplementing shoreline data collected in the field), channel width, and orientation. Due to the uncertainties and the variation in survey methods, a rigorous quantitative analysis was not performed. However, average calculations of various breach metrics allow a qualitative analysis of breach development and evolution. This report presents an overview of the data collected and a summary discussion of the observed changes to the breach system and the seasonal wave climatology associated with the breach morphodynamic response.

New York↗

USGS2010

A summary of information on the rust Puccinia psidii Winter (guava rust) with emphasis on means to prevent introduction of additional strains to Hawaii

The neotropical rust fungus Puccinia psidii ( P. psidii ) was originally described from the host common guava in its native Brazil but has been found since on hosts throughout the myrtle family (Myrtaceae), including a dramatic host jump to nonnative Eucalyptus plantations. Most rust fungi are able to live only on a very narrow range of host species. P. psidii is unusual both for having a broad host range and for the intensity of its damage to susceptible young growth. This rust first got a foothold in the United States in Florida more than three decades ago. The U.S. Department of Agriculture (USDA) has since considered it a nonactionable, nonreportable pest. Hawaii and Florida are the only two states with native species in the myrtle family. Over a period of 30 years, this rust has done little damage to any of the scattered native Myrtaceae in Florida, although the host range of the rust has gradually grown to about 30 mostly nonnative species in the family, apparently because of increasing genetic variety of the rust by repeated introductions. However, Florida’s native Myrtaceae are among the roughly 1,100 neotropical species that are largely resistant to P. psidii . The 3,000 species of non-neotropical Myrtaceae of the Pacific, Australia, Asia, and Africa are expected to prove much more vulnerable to P. psidii . Little is known about the genetics or genetic strains of P. psidii , although existing literature shows that there are numerous strains that have differential ability to infect suites of host plants. The rust was first recorded in the state of Hawaii on Oahu in April 2005 and quickly spread throughout the Hawaiian Islands. The main concern in Hawaii became the potential threat to ohia, Metrosideros polymorpha (Myrtaceae), the endemic forest tree species overwhelmingly important in Hawaii’s nature and culture. The potential ecological consequences of a virulent strain of rust on ohia forests are immense, due to its role as a foundation tree species and the diversity of niches it fills in Hawaii. A single genetic strain of the rust is established in Hawaii, apparently composed of a single genotype lacking sexual reproduction. P. psidii has been found statewide in Hawaii attacking Myrtaceae from near sea level to about 1,200 m elevation in areas with rainfall ranging from 750–5,000 mm. Five of eight native Myrtaceae and at least 15 nonnative species have been observed as hosts of P. psidii in Hawaii. The federally endangered Eugenia koolauensis (nioi) and the nonendangered indigenous species Eugenia reinwardtiana are severely damaged. The introduced (an Asian species) and invasive rose apple, Syzygium jambos , is severely affected at a landscape scale, with widespread crown dieback and many instances of complete tree death. In spite of billions of wind-dispersed rust spores produced from rose apple infestations during 2006 to 2008, adjacent ohia have been little affected to date by the rust strain in Hawaii. Within the elevation range of the rust, P. psidii is found on less than 5 percent of the ohia trees in the wild; on those ohia trees on which the rust is found, it is normally found on less than 5 percent of the leaves. The strain in Hawaii has not attacked many of the species known to be infected by the rust elsewhere, including common guava. On the basis of the very substantial genetic diversity of the much-studied, crop-damaging species of the genus Puccinia , there is good reason to believe that there are at minimum dozens and likely hundreds or thousands of genotypes of P. psidii , likely concentrated in the core range in Brazil but with potential for dispersal by globalization. Multiple genotypes are believed already present in the United States and certain to spread freely in the absence of restrictions. The U.S. Forest Service has initiated a major collaborative project in Brazil to investigate the genetics of susceptibility of Hawaii’s ohia to P. psidii , but initial results will likely not be available for several years. If just one more strain reaches Hawaii, the consequences could be dire for ohia, with each new genotype arriving having an unknown likelihood of increasing damage to ohia; possibilities for mutation and (or) genetic mixing, even with asexual strains, are apparently substantial, based on what is known about other Puccinia species. Investigations are needed to clarify rust-nioi relationships. However, it is likely that keeping out new strains of P. psidii may be important for long-term survival of nioi as well as for the health of ohia forest. The source of Hawaii’s initial invasion by P. psidii is uncertain but is strongly suspected to have been decorative foliage of species in the myrtle family from the mainland United States, most likely California, where there had been outbreaks of this rust on cultivated myrtle in 2005. In 2006–7, Maui’s Hawaii Department of Agriculture (HDOA) inspectors intercepted several P. psidii infected shipments of foliage myrtle, shipped from several California counties. Recognizing the huge threat of the rust to Hawaii’s one million acres of ohia forests, and consequently to Hawaii’s watersheds and biodiversity, Hawaii’s Board of Agriculture unanimously approved an interim rule in August 2007 banning importation of plants in the myrtle family from “infested areas,” specified as South America, Florida, and California. However, the interim rule has not been made permanent by HDOA, and the department has stated that it needs further information to formulate a long-term rule that imposes appropriate measures. Rust spores can survive for 2 to 3 months, and the pathogen can be transported to Hawaii on Myrtaceae from anywhere in the world through the United States mainland. There is much geographic reshuffling of flowers and foliage among the far-flung firms in the trade, especially for bouquet making. Because P. psidii is a nonactionable and nonreportable pest in the United States, foliage and flowers of the myrtle family can move freely into the country (usually but not necessarily always through the ports of Miami or Los Angeles), and from state to state. Currently, the State of Hawaii regulates incoming plant material in the family Myrtaceae by visual inspection. Inspection capacity and latent (asymptomatic) infections limit the ability to detect the rust. New molecular tests could improve detection efficiency, but the cost and the time required to process samples currently precludes their routine use in ports of entry. Interdiction, which has effectively kept coffee rust ( Hemileia vastatrix ) out of Hawaii for 120 years, offers the strongest protection for Hawaii’s native ecosystems from P. psidii . Interdiction of Myrtaceae from the continental United States could have the important supplementary benefit of preventing establishment in Hawaii of other very significant pests of multiple species of Myrtaceae that are already in the country, including: the Eugenia psyllid Trioza eugeniae (Hemiptera: Psyllidae); Chrysophtharta m-fuscum , the Eucalyptus tortoise beetle (Coleoptera: Chrysomelidae); Leptocybe invasa , the blue gum chalcid wasp (Hymenoptera: Chalcidae); and the fungal pathogens Mycosphaerella molleriana (Ascomycota: Mycosphaerelliaceae, crinkle leaf disease of Eucalyptus spp.) and Neofusicoccum parvum (Ascomycota: Botryosphaeriaceae), currently causing serious damage to Syzygium paniculatum in south Florida nurseries. Each of these pests would be likely to cause very significant damage to native and (or) cultivated Myrtaceae in Hawaii. Each of these pests is a prime candidate for transport by the foliage and (or) nursery stock pathways from Florida and California into Hawaii. Hawaii Department of Agriculture has a clear mandate to protect Hawaii’s natural environment, forestry and cultivated Myrtaceae. Principles of the World Trade Organization’s Treaty on Sanitary and Phytosanitary Measures and the International Plant Protection Convention are consistent with the right of Hawaii to take action. The current threat of P. psidii and the other five serious threats to Myrtaceae are primarily posed by the importation of infected plants from the continental United States; however, that may change in the future. If Hawaii were to decide to take a stand (through State regulation) to protect its native and introduced Myrtaceae, there is a possibility that USDA would consider Federal regulation of Myrtaceae from foreign countries.

Hawaii↗

USGS2016

A satellite model of Southwestern Willow Flycatcher ( Empidonax traillii extimus ) breeding habitat and a simulation of potential effects of tamarisk leaf beetles ( Diorhabda spp.), southwestern United States

Executive Summary The study described in this report represents the first time that a satellite model has been used to identify potential Southwestern Willow Flycatcher ( Empidonax traillii extimus ) (hereinafter referred to as “flycatcher”) breeding habitat rangewide for 2013–15. Fifty-seven Landsat scenes were required to map the entire range of the flycatcher, encompassing parts of six States and more than 1 billion 30-meter pixels. Predicted flycatcher habitat was summarized in a hierarchical fashion from largest to smallest: regionwide, State, U.S. Fish and Wildlife Service (FWS) management unit, 7.5-minute quadrangle, and critical-habitat reach. The term “predicted habitat” is used throughout this report to distinguish areas the satellite model predicts as suitable flycatcher habitat from what may actually exist on the ground. A rangewide accuracy assessment was done with 758 territories collected in 2014, and change detection was done with yearly habitat maps to identify how and where habitat changed over time. Additionally, effects of tamarisk leaf beetles ( Diorhabda spp.) on flycatcher habitat were summarized for the lower Virgin River from 2010 to 2015, and simulations of how tamarisk leaf beetles may affect flycatcher habitat in the lower Colorado and upper Gila Rivers were done for 2015. Model results indicated that the largest areas of predicted flycatcher habitat at elevations below 1,524 meters were in New Mexico and Arizona, areas followed in descending order by California, Texas, Nevada, Utah, and Colorado. By FWS management unit, the largest area of flycatcher habitat during all 3 years were the Middle Rio Grande (New Mexico), followed by the Upper Gila (Arizona and New Mexico) and Middle Gila/San Pedro (Arizona) management units. The area of predicted flycatcher habitat varied considerably in 7.5-minute quadrangles, ranging from 0 to1,398 hectares (ha). Averaged across 3 years, the top three producing quadrangles were Paraje Well (New Mexico), San Marcial (New Mexico), and San Carlos Reservoir (Arizona). The top three FWS critical-habitat reaches in 2015 were Rio Grande-middle (9,544 ha), San Pedro River (1,779 ha), and Gila River-mid San Carlos (1,356 ha); this ranking did not change in 2013 or 2014. Change detection among years showed a large shift in predicted flycatcher habitat influenced by drought patterns, with California habitat decreasing and New Mexico habitat increasing. An accuracy assessment indicated that 88 percent of territories were correctly classified at a 40 percent probability threshold, with an exponential relationship between territory densities and five probability classes. A spatially explicit analysis indicated that beetles decreased predicted flycatcher habitat 94.2 percent from 2010 to 2015 along the lower Virgin River, with only 5.8 percent persisting. In contrast, beetle simulations indicated that 64.1 percent of habitat will persist along the lower Colorado River and 45 percent will persist along the upper Gila River. This project shows that the satellite model adequately predicts flycatcher habitat rangewide, but it lacks the ability to predict which patches will be occupied in a given year. The next logical step is the development of an occupancy model that ties the habitat predictions of the satellite model to patch occupancy so managers can better allocate their resources for survey and restoration activities. Finally, the methods presented in this report seem well suited for automated mapping applications and cloud-based resources.

Open-File Report↗

USGS1996

Physical, chemical, and biological characteristics of the Charlotte Harbor basin and estuarine system in southwestern Florida: A summary of the 1982-89 U.S. Geological Survey Charlotte Harbor assessment and other studies

The Charlotte Harbor estuarine system, having a surface area of about 270 square miles, averages about 7 feet in depth and is connected to deep water of the Gulf of Mexico through several passes and inlets between barrier islands. Three major rivers flow into the estuary--the Peace, the Myakka, and the Caloosahatchee. Freshwater and tidal flushing transport nutrients and other constituents from the basin through the estuary into the gulf. Flushing characteristics were evaluated using a two-dimensional hydrodynamic model. The model indicated that the time required to flush injected dye (simulated) from some subareas of the harbor was longer for reduced freshwater inflow than for typical freshwater inflow. After 30 days of simulation of reduced freshwater inflow, 42 percent of the dye injected into the upper harbor remained in the upper harbor, compared to 28 percent for typical freshwater inflow. The Charlotte Harbor estuary is usually well mixed or partially mixed in the vertical, but vertical salinity stratification does occur, primarily during late summer when freshwater inflows are greatest. A box model was developed that incorporated vertically averaged salinities to account indirectly for three-dimensional transport processes associated with vertical stratification. The box model predicts that under high (7,592 cubic feet per second) and average (2,470 cubic feet per second) freshwater inflows from the Peace and Myakka Rivers, 50 percent of the original water (present at the start of the model run) would be flushed from the northern part of the estuarine system into the Gulf of Mexico in 10 days and 20 days, respectively. The distribution of plant nutrients in the Charlotte Harbor Estuary is affected by nutrient inputs, freshwater and tidal flushing, mixing, and recycling processes in the estuary. The distributions of total phosphorus and orthophosphate are affected mainly by river input and physical mixing. The distribution of ammonia nitrogen is variable and is related more to recycling within the estuary than to input from the rivers. Ammonia concentrations increase in deeper water, probably in response to vertical salinity stratification and low concentrations of dissolved oxygen that foster regeneration of ammonia from bottom sediments. The distribution of nitrite plus nitrate nitrogen is nonconservative--concentrations are high in the rivers and decrease more rapidly in the estuary than expected due to dilution with sea water, probably because of phytoplankton uptake. Phytoplankton productivity and biomass are usually greatest during late summer near the mouths of the tidal rivers when freshwater inflow and nutrient loading are greatest. The highly colored freshwater runoff reduces light penetration and phytoplankton productivity in regions of the estuary where salinity is less than about 10 parts per thousand, but the nutrient-rich, colored water is diluted by seawater at midsalinities (10-20 parts per thousand) so that availability of light increases and inorganic nitrogen concentrations are still high enough to stimulate productivity and growth of phytoplankton. In much of the estuary, salinity is greater than 20 parts per thousand, and availability of inorganic nitrogen, not light, limits productivity and growth. Although the Charlotte Harbor estuarine system is relatively undisturbed, much of its basin has been altered by human activities. Streamflow decreased substantially during 1931-84 in parts of the Peace River, probably because of ground-water withdrawals in the basin. Nutrient concentrations generally increased in the rivers during 1970-85, because of an increase in the flow of wastewater and agricultural runoff. The concentrations of phosphorus are naturally high in the Peace River because of extensive phosphate deposits in the basin. The phosphate deposits also are relatively rich in radionuclides of the uranium-238 series, including radium-226. In the upper basin, these deposits are exposed in the riverbed. Extensive phosphate mining and processing have exposed additional deposits to surface runoff. Periodic spills of phosphate sediments (slimes) have contributed additional phosphorus and radium-226 to the river and estuary. A single spill can contribute a phosphorus load equal to the annual loading in the Peace River at Arcadia. The projected increase in population in the basin by the year 2020 would generate an additional 60 million gallons per day of domestic wastewater over that generated during 1980, which would increase nitrogen loading in the basin by more than 3 tons per day. Intensified agricultural and industrial developments, particularly expanding citrus production and phosphate mining, could generate additional loads of nutrients and a variety of inorganic and organic contaminants. Increased inputs of nutrients, particularly nitrogen, could encourage growth and increase abundance of phytoplankton and benthic and epiphytic algae. If water were less colored as a result of reduced freshwater inflow, undesirable algal growth could be exacerbated because of increased availability of light. Increased abundance of phytoplankton and other algae could likely change dissolved-oxygen concentrations in the estuary, resulting in greater day-to-night fluctuations and the possible depletion of dissolved oxygen in deep water. At the present time, near-anaerobic conditions occur for days or weeks in the deep water (more than 9 feet) of the northern harbor during late summer. These conditions could become more persistent with time and over wider areas, if phytoplankton and other algae increase in abundance and in their contribution to benthic oxygen demand. An increased abundance of phytoplankton and other algae also would reduce light penetration and adversely affect seagrasses.

Florida↗

USGS2020

Gear comparison study for sampling nekton in Barataria Basin marshes

This project was funded by the Louisiana Trustee Implementation Group (LA TIG) to support decisions related to investments in long-term monitoring. The LA TIG seeks to ensure long-term monitoring informs coastal restoration activities with the goal of sustaining and improving fisheries impacted by the Deepwater Horizon (DWH) Oil Spill. The project objective was to compare nekton catch across an estuarine gradient using different sampling gear with the goal of identifying trade-offs among nekton sampling approaches. To accomplish this objective, Louisiana Department of Wildlife and Fisheries (LDWF), The Water Institute of the Gulf (the Institute), Dynamic Solutions, LLC, Louisiana State University Agricultural Center (LSU AgCenter), and the U.S. Geological Survey (USGS) completed a field gear comparison study from 2018 to 2019. This work compared electrofisher and seine sampling at 12 fixed stations in Barataria Basin using data collected by LDWF. In addition, and in conjunction with LDWF monthly sampling, the same 12 fixed stations were sampled in May 2019 using a throw trap to compare nekton catch and assemblages collected with the throw trap, seine and electrofisher. LDWF has been conducting seine sampling since 1986, and seine data are used by the State of Louisiana to assess juvenile shrimp, crab and fish abundances, sizes and overall assemblages. In 2018, LDWF began conducting electrofisher sampling at 12 Barataria Basin seine stations in order to determine if the two gear types sample similar species and assemblages for potential future replacement of long-term seine sampling with electrofishing. Throw traps were included as they provide density estimates, which are ultimately the desired statistic used in modeling trophic webs, and are used in assessing habitat restoration outcomes. The project compared the nekton catch and assemblages collected using seine, electrofisher, and throw trap data from marsh edge habitats located across the estuarine gradient in Barataria Basin. Specifically, catch per unit effort (CPUE), species richness, species-specific total length (mm) distribution and nekton assemblages were compared between gear types. The first dataset was collected in May 2019 with throw trap (Appendix A), seine (LDWF data), and electrofisher (LDWF data) gear, and the second dataset (collected by LDWF) spanned 14 months of seine and electrofisher monthly sampling occurring from May 2018 through June 2019 at 12 stations in Barataria Basin. Key findings include that gear bias was not evident across the range of water quality conditions (salinity, temperature, o C, dissolved oxygen, mg L-1 , turbidity, NTU; Appendix B: scatter plots) captured during this pilot study, but differences in nekton catch per unit effort (CPUE) and assemblages were evident between gear types. However, those differences largely depended on the parameter examined. For example, the overall CPUE was highest for electrofishing, followed by seine, and then throw trap. When grass shrimp (the most abundant taxon collected) were removed from CPUE, the electrofisher and seine results were similar in CPUE. When CPUE was corrected for gear efficiency and total area sampled, the throw trap had the highest reported density of nekton sampled, followed by electrofisher and seine results. Electrofishing captured the highest number of species, which included more unique species compared to seine or throw trap catches, though all gear types captured at least one unique species. These highlight a need for caution in interpreting assemblage and density data when comparing datasets derived from different sampling methodologies. These key findings can help inform implementation and interpretation of long-term monitoring data in Louisiana as management decisions are made about coastal restoration projects to sustain and improve fisheries. There are trade-offs in selecting gear types for estuarine nekton monitoring of density, abundance, species richness, and assemblages. The table below (Table 1) summarizes some considerations when selecting gear types for long-term monitoring of estuarine nekton. In addition to biological and ecological considerations, other important considerations include cost, the labor required to conduct sampling, logistics, and potential uncertainties related to how effective each gear type is for sampling the wide variety of conditions found across Louisiana’s coastal habitats. For example, although electrofishing may capture higher CPUE, the equipment is more expensive to obtain and maintain compared to the other gear types. Most importantly, this table highlights differences in the nekton assemblages sampled by each gear type; this consideration is critical when designing the goals of a long-term monitoring program as it will inform how the data can be used and interpreted in the future. This report provides caveats, assumptions, and recommendations that can help support the Louisiana Coastal Protection and Restoration Authority (CPRA), LDWF and the LA TIG in comparing data from different gear types, and in making decisions for future monitoring. Findings from this study are limited to the range of water quality conditions occurring during these data collection events; these data and analyses could benefit from sampling across a wider range of water quality conditions, and collection of habitat structure and bottom type data which are not routinely collected but critically influence nekton. Further investigation examining how relative differences detected in key species abundances between gear types might impact ecosystem indicators and energetics in a modeled food web would provide valuable input to understand outputs of the Comprehensive Aquatic System Model for Barataria Basin, including the potential impacts of nekton monitoring decisions on food web models.

Louisiana↗

USGS2016

Shifting currents: Progress, setbacks, and shifts in policy and practice

The Wisconsin Academy’s initial Waters of Wisconsin project (WOW I) facilitated a statewide conversation between 2000 and 2003 around one main question: How can we ensure healthy aquatic ecosystems and clean, abundant water supplies for tomorrow’s Wisconsin? Robust participation in this conversation underscored the important role citizens have in the stewardship of our waters, and we found enthusiastic support for farsighted policies—based on sound science—to manage our water legacy. Overall, we found that Wisconsinites cherish water and see our waters as essential to our way of life in Wisconsin. Nationally, our state ranks 25th in land area but has the fourth-highest area covered by water. Wisconsin is 20th in population but is second only to Florida in the number of fishing licenses sold each year. Clean water supports billions of dollars’ worth of economic activity through tourism, agriculture, and industry. From the Northwoods cabin to the Port of Milwaukee to the Wisconsin Dells, water shapes our state’s identity. Our tradition of safeguarding Wisconsin’s waters is grounded in values such as responsibility to family and future generations, respect for land and wildlife, protecting public health and safety, and caring for water as a common good, as articulated in the state’s Public Trust Doctrine (see page 9). These deeply held values have also shaped a conservation ethic, and its legacy has served many generations who depend upon and enjoy the waters of the state. Through WOW I, we identified the need to overcome the institutional and disciplinary separation of science, policy, and management protocols through a more integrated approach to water management. WOW also affirmed that the Wisconsin Department of Natural Resources (DNR) and other public agencies play a critical role in sound scientific application, citizen participation, and the practical implementation of policy while balancing public and private interests toward the goal of a clean water future. More than a decade has passed since our first statewide WOW conversation and the report that captured recommendations from its participants: Waters of Wisconsin: The Future of Our Aquatic Ecosystems and Resources. Drawing from a diverse and growing set of stakeholders from across the state, the Wisconsin Academy initiated a new conversation in 2012 (known as WOW II) to assess progress in regard to our 2003 recommendations. We also sought to review the status of waters in Wisconsin today. The result of this renewed conversation is Shifting Currents: Progress, Setbacks, and Shifts in Policy and Practice. The new report assesses progress in brief, and explores in greater depth the continuing and emerging challenges to water quality, supply, and aquatic ecosystems in Wisconsin. In this report, we first review the context and frameworks for public decision-making about water and then examine some of the root causes—or “drivers”—and ecological stressors that underlie many of the symptoms we see in the form of pollution or ecosystem degradation in Wisconsin. This is followed by a summary of current water issues, many of which had been identified in the 2003 report and remain relevant today. We examine progress since 2003 but also setbacks, and discuss issues that we are likely to continue to face in the coming decades, including controlling agricultural runoff, mitigating climate change and grappling with its effects on the state’s waters, protecting groundwater from bacterial contamination and other pollutants, and preventing groundwater depletion. We also attempt to anticipate issues on the horizon. We offer a deeper look at some particular challenges, such as phosphorus pollution and groundwater contamination. We then consider the current decision-making framework and how it is shaping our capacity to respond to water challenges in Wisconsin. Finally, we offer recommendations and identify opportunities to safeguard Wisconsin’s waters in the decades ahead. From its inception, the Wisconsin Academy’s Waters of Wisconsin Initiative has brought together a diverse community of experts from across the state and from varied fields and areas of interest, to address challenges and seize opportunities related to our precious waters. We have done so as a matter of both principle and practical reality: the state of our waters reflects the ways we interact not only with them, but also with one another and our institutions. The WOW Initiative has aimed to provide guidance for Wisconsin citizens in sustaining the health of our aquatic ecosystems and the resilience of our water supplies over the long term.

Report↗

USGS2007

Metallogeny of Mesoproterozoic sedimentary rocks in Idaho and Montana - Studies by the Mineral Resources Program, U.S. Geological Survey, 2004-2007

Preface By J.Michael O'Neill The major emphasis of this project was to extend and refine the known Mesoproterozoic geologic and metallogenic framework of the region along and adjacent to the Idaho-Montana boundary north of the Snake River Plain. The Mesoproterozoic metasedimentary rocks in this part of east-central Idaho host important Cu-Co-Au stratabound mineral resources as well as younger, epigenetic hydrothermal, sulfide base-metal mineral deposits. Two tasks of this study were to more accurately understand and portray the character and origin of cobalt-copper-gold deposits that compose the Idaho cobalt belt and specifically to analyze ore mineralogy and metallogenesis within the Blackbird mining district in the central part of the belt. Inasmuch as the cobalt belt is confined to the Mesoproterozoic Lemhi Group strata of east-central Idaho, geologic investigations were also undertaken to determine the relationship between strata of the Lemhi Group and the more extensive, noncobalt-bearing, Belt-Purcell Supergroup strata to the north and northwest. Abrupt lateral differences in the character and thickness of stratigraphic units in the Mesoproterozoic Lemhi Basin may indicate differential sedimentation in contemporaneous fault-bounded subbasins. It is suggested that northeast-trending basement faults of the Great Falls tectonic zone controlled development of the subbasins. O'Neill and others (chapter A, this volume) document a second major basement fault in this area, the newly recognized northwest-striking Great Divide megashear, a zone 1-2 km wide of left-lateral strike-slip faults active during Mesoproterozoic sedimentation and bounding the Cu-Co belt on the northwest. The megashear is a crustal-scale tectonic feature that separates Lemhi Group strata from roughly coeval Belt-Purcell strata to the north and northwest in Montana and northern Idaho. The results of numerous geologic investigations of the Cu- and Co-bearing Mesoproterozoic rocks of east-central Idaho are integrated and summarized by Bookstrom and others (chapter B, this volume). In particular, their field investigations and analysis of evidence and previous arguments for synsedimentary versus epigenetic mineral deposit types, both of which have been postulated by earlier workers, led them to conclude that both processes were likely instrumental in forming the ore deposits of the Blackbird district. Finally, this report supplies new data on isotopic ratios of sulfur, oxygen, carbon, and helium in minerals associated with cobalt-bearing ores of the cobalt belt. Slack (chapter C, this volume) identified several previously unrecognized rare-earth-element minerals in Blackbird ores: monazite (Ce,La,Y,Th)PO4, xenotime (YPO4), allanite (CaCe)2(Al,Fe)3Si3O12(OH), and gadolinite (Be2FeY2Si2O10). Light rare-earth elements reside mostly in monazite, whereas yttrium and heavy rare-earth minerals reside mostly in xenotime. Dated monazite, which in the Blackbird district is interstitial to cobaltite, is Cretaceous. This date brings into question the otherwise geologically convincing interpretation of Blackbird ores as being of Mesoproterozoic age and synsedimentary origin. This volume consists of three summary articles: A. Great Divide megashear, Montana, Idaho, and Washington: An intraplate crustal-scale shear zone recurrently active since the Mesoproterozoic by J. Michael O'Neill, Edward T. Ruppel, and David A. Lopez B. Blackbird Fe-Cu-Co-Au-REE deposits by Arthur A. Bookstrom, Craig A. Johnson, Gary P. Landis, and Thomas P. Frost C. Geochemical and mineralogical studies of sulfide and iron oxide deposits in the Idaho cobalt belt by John F. Slack

Idaho, Montana↗