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USGS2012

A comparison of consumptive-use estimates derived from the simplified surface energy balance approach and indirect reporting methods

Recent advances in remote-sensing technology and Simplified Surface Energy Balance (SSEB) methods can provide accurate and repeatable estimates of evapotranspiration (ET) when used with satellite observations of irrigated lands. Estimates of ET are generally considered equivalent to consumptive use (CU) because they represent the part of applied irrigation water that is evaporated, transpired, or otherwise not available for immediate reuse. The U.S. Geological Survey compared ET estimates from SSEB methods to CU data collected for 1995 using indirect methods as part of the National Water Use Information Program (NWUIP). Ten-year (2000-2009) average ET estimates from SSEB methods were derived using Moderate Resolution Imaging Spectroradiometer (MODIS) 1-kilometer satellite land surface temperature and gridded weather datasets from the Global Data Assimilation System (GDAS). County-level CU estimates for 1995 were assembled and referenced to 1-kilometer grid cells to synchronize with the SSEB ET estimates. Both datasets were seasonally and spatially weighted to represent the irrigation season (June-September) and those lands that were identified in the county as irrigated. A strong relation (R2 greater than 0.7) was determined between NWUIP CU and SSEB ET data. Regionally, the relation is stronger in arid western states than in humid eastern states, and positive and negative biases are both present at state-level comparisons. SSEB ET estimates can play a major role in monitoring and updating county-based CU estimates by providing a quick and cost-effective method to detect major year-to-year changes at county levels, as well as providing a means to disaggregate county-based ET estimates to sub-county levels. More research is needed to identify the causes for differences in state-based relations.

Scientific Investigations Report↗

USGS2012

Evaluation of the relation between evapotranspiration and normalized difference vegetation index for downscaling the simplified surface energy balance model

The Simplified Surface Energy Balance (SSEB) model uses satellite imagery to estimate actual evapotranspiration (ET a ) at 1-kilometer resolution. SSEB ET a is useful for estimating irrigation water use; however, resolution limitations restrict its use to regional scale applications. The U.S. Geological Survey investigated the downscaling potential of SSEB ET a from 1 kilometer to 250 meters by correlating ET a with the Normalized Difference Vegetation Index (NDVI) from the Moderate Resolution Imaging Spectroradiometer instrument (MODIS). Correlations were studied in three arid to semiarid irrigated landscapes of the Western United States (Escalante Valley near Enterprise, Utah; Palo Verde Valley near Blythe, California; and part of the Columbia Plateau near Quincy, Washington) during several periods from 2002 to 2008. Irrigation season ET a -NDVI correlations were lower than expected, ranging from R 2 of 0.20 to 0.61 because of an eastward 2–3 kilometer shift in ET a data. The shift is due to a similar shift identified in the land-surface temperature (LST) data from the MODIS Terra satellite, which is used in the SSEB model. Further study is needed to delineate the Terra LST shift, its effect on SSEB ET a , and the relation between ET a and NDVI.

Scientific Investigations Report↗

USGS2021

Evaluation of actual evapotranspiration rates from the Operational Simplified Surface Energy Balance (SSEBop) model in Florida and parts of Alabama and Georgia, 2000–17

Evapotranspiration (ET) is the water-vapor flux transported from the surface of the Earth into the atmosphere and is the sum of surface water directly evaporated and subsurface water transpired by plants. ET rates are commonly estimated by using potential or reference ET, which might differ from actual ET rates. Actual evapotranspiration (ETa) rates can be estimated by using the Operational Simplified Surface Energy Balance (SSEBop) model. This report evaluates SSEBop ETa rates at the point and basin scales in Florida and parts of Alabama and Georgia for 2000–17. ETa rates computed by using data from 24 micrometeorological stations in Florida are referred to as mETa rates and were used to quantify biases in the SSEBop ETa rates, stratified by generalized land-use type. Bias was computed as mETa minus SSEBop ETa rates for given generalized land-use types, and bias-correction equations were computed by using least-squares regressions. In addition to mETa rates at station locations, annual average ETa rates calculated from the application of a water-balance method to 55 basins in Florida and parts of Alabama and Georgia were used to assess the accuracy of the annual SSEBop ETa rates at the basin scale. Another independent model used to simulate ETa rates was based on monthly reference ET from the statewide daily reference evapotranspiration (ETo) gridded dataset for Florida computed by using Geostationary Operational Environmental Satellite estimates of solar radiation (GOES ETo). ETa at grid points was computed as monthly GOES ETo multiplied by ratios of monthly mETa to GOES ETo, computed at micrometeorological stations and stratified by each generalized land-use type. The coefficient of determination (R 2 ) between monthly mETa and SSEBop ETa rates for all stations combined improved from 0.37 before bias correction of SSEBop ETa rates to 0.79 after the bias correction stratified by land-use type. For individual land-uses types, R 2 varied from 0.59 for the monthly mETa at a station in the land-use type forest to 0.82 for the monthly mETa at stations in the land-use type shallow-water-table pasture. Root-mean-square error (RMSE) was computed as a function of the difference between SSEBop ETa rates and mETa rates. RMSE of monthly SSEBop ETa rates was 1.27 inches per month before the bias corrections improved to 0.73 inch per month after the bias corrections. RMSE for bias-corrected annual SSEBop ETa rates based on micrometeorological stations with complete years of records ranged from 2.01 inches per year (in/yr) for the land-use type of agriculture to 5.73 in/yr for the land-use type of deep water-table pasture, or 4.96 and 21.21 percent errors relative to annual mETa rates, respectively. Bias-corrected annual SSEBop ETa rates were also compared to annual ETa rates computed by using a water-balance method (wbETa) for 55 basins in Florida. Differences in bias-corrected average annual SSEBop ETa rates and average annual wbETa rates for the 55 basins ranged from −3.67 to 5.29 in/yr (−9.24 to 17.36 percent). RMSE when computed as a function of the differences between annual SSEBop ETa rates and wbETa rates decreased, on average, from 4.13 in/yr for the uncorrected bias SSEBop ETa rates to 1.95 in/yr for the bias-corrected SSEBop rates. The average annual bias-corrected SSEBop ETa rates, from all basins, was 36.46 in/yr or 3.41 percent lower than the average annual wbETa rate of 37.79 inches. Bias in SSEBop ETa rates varies based on time step (monthly versus annual), scale (point, basin, statewide), and land-use type. Applications to hydrologic models should consider bias relative to the inherent error in models. Bias-corrected SSEBop ETa rates could be used as calibration targets in models of hydrologic processes, such as groundwater models. Annual bias in SSEBop ETa introduced to the model calibration is typically below the margin of error associated with typical residuals in model simulations, depending on scale. Surface-water and groundwater-flow models with RMSEs on the order of a few feet could benefit from bias-corrected SSEBop values of ETa.

Alabama, Florida, Georgia↗

USGS2017

Water, Energy, and Biogeochemical Model (WEBMOD), user’s manual, version 1

The Water, Energy, and Biogeochemical Model (WEBMOD) uses the framework of the U.S. Geological Survey (USGS) Modular Modeling System to simulate fluxes of water and solutes through watersheds. WEBMOD divides watersheds into model response units (MRU) where fluxes and reactions are simulated for the following eight hillslope reservoir types: canopy; snowpack; ponding on impervious surfaces; O-horizon; two reservoirs in the unsaturated zone, which represent preferential flow and matrix flow; and two reservoirs in the saturated zone, which also represent preferential flow and matrix flow. The reservoir representing ponding on impervious surfaces, currently not functional (2016), will be implemented once the model is applied to urban areas. MRUs discharge to one or more stream reservoirs that flow to the outlet of the watershed. Hydrologic fluxes in the watershed are simulated by modules derived from the USGS Precipitation Runoff Modeling System; the National Weather Service Hydro-17 snow model; and a topography-driven hydrologic model (TOPMODEL). Modifications to the standard TOPMODEL include the addition of heterogeneous vertical infiltration rates; irrigation; lateral and vertical preferential flows through the unsaturated zone; pipe flow draining the saturated zone; gains and losses to regional aquifer systems; and the option to simulate baseflow discharge by using an exponential, parabolic, or linear decrease in transmissivity. PHREEQC, an aqueous geochemical model, is incorporated to simulate chemical reactions as waters evaporate, mix, and react within the various reservoirs of the model. The reactions that can be specified for a reservoir include equilibrium reactions among water; minerals; surfaces; exchangers; and kinetic reactions such as kinetic mineral dissolution or precipitation, biologically mediated reactions, and radioactive decay. WEBMOD also simulates variations in the concentrations of the stable isotopes deuterium and oxygen-18 as a result of varying inputs, mixing, and evaporation. This manual describes the WEBMOD input and output files, along with the algorithms and procedures used to simulate the hydrology and water quality in a watershed. Examples are presented that demonstrate hydrologic processes, weathering reactions, and isotopic evolution in an alpine watershed and the effect of irrigation on water flows and salinity in an intensively farmed agricultural area.

Techniques and Methods↗

USGS2024

Accounting for the fraction of carcasses outside the searched area in the estimation of bird and bat fatalities at wind energy facilities

Accurate estimation of bird and bat mortality at wind energy facilities requires accounting for carcasses that lie outside the search plots because they lie beyond the search radius or in areas within the search radius that remain unsearched due to sub-optimal search conditions such as thick vegetation, rough or dangerous ground, water, or restricted access to the land. However, carcass density is not constant around a turbine and the fraction of carcasses within the unsearched area can vary greatly depending on where the area lies relative to the turbine. The density-weighted proportion approach takes into account the changing density of carcasses around turbines to estimate the fraction of carcasses lying in unsearched areas (dwp). It involves tallying the carcasses found in concentric rings centered at the turbine, fitting a curve to the carcass densities in the rings, and dividing the integral of the curve over the area searched by the integral over the total area. Accounting for unsearched area presents special difficulties such as extrapolation beyond the search radius, spatial prediction, and model selection, which are frequently ignored or under-appreciated, potentially resulting in substantial estimation errors. A powerful new R software package (dwp) is available to perform the calculations, given the distances at which carcasses were found from turbines and a map of the searched area used to discern the fraction of the ground searched at each distance. If all ground within a given search radius has been searched, the map is simply the search radius. For more complicated search plots, other kinds of maps may be used: R polygons for plots that can be readily delineated into searched and not-searched areas (for example, searches restricted to access roads and turbine pads), GIS shape files for complicated search patterns (for example, non-uniform vegetation or ground texture resulting in spatially varying search conditions), or raster files for complicated search patterns coupled with carcass spatial distribution that depends on both distance and direction from turbines. This study discusses estimation and interpretation of dwp in the context of several realistic examples; provides guidance for use of the dwp software for doing the analyses; and addresses questions of extrapolation, spatial prediction, and model selection.

Techniques and Methods↗

USGS1976

Reaeration-coefficient measurements of 10 small streams in Wisconsin using radioactive tracers : with a section on the energy-dissipation model

Reaeration-rate coefficients were measured for 10 small streams in Wisconsin using the radioactive-tracer method. The coefficients ranged from 2.06 to 55.2 per day (base e at 25 degrees Celsius). Stream discharges ranged from 0.3 to 37.0 cubic feet per second, most discharges being less than 10 cubic feet per second. Data also were collected for evaluation of the energy-dissipation model. The escape coefficient of 0.090 per foot at 25 degrees Celsius may be used for small streams similar to those studied. (Woodward-USGS).

Water-Resources Investigations Report↗

USGS1985

Reconnaissance of water quality at a U.S. Department of Energy site, Pinellas County, Florida

Sanitary and industrial wastes at the Pinellas Plant of the U.S. Department of Energy, prior to December 1982, were combined, treated, and disposed of by ponding and spray irrigation on a 10-acre tract within the plant site. Prior to 1972, the treated wastes were released to surface drainage features. An electromagnetic survey for ground conductivity was made to identify changes in the ground conductivity that may be due to the spray irrigation disposal operations. Water samples from four test wells drilled into the surficial aquifer and the two disposal ponds and bottom material from the ponds were analyzed for priority and nonpriority pollutants, total organic carbon, volatile organic carbon, herbicides, insecticides, trace metals, nutrients, and major constituents. Overall, concentrations of constituents in the water samples were (1) less than the detection limits, (2) within U.S. Environmental Protection Agency quality criteria for water, or (3) within the range of results for a designated background water-quality site. Concentrations of 12 priority pollutants were found to be considerably above detection limits. Concentrations of these compounds, mostly coal-tar derivatives, ranged from 220 to 5,500 micrograms per kilogram; the detection limit for these compounds is 10 micrograms per kilogram. Included in these compounds were anthracene, pyrenes, and chrysene.

Florida↗

USGS1994

Geohydrology of the High Energy Laser System Test Facility site, White Sands Missile Range, Tularosa Basin, south-central New Mexico

The Yesum-HoHoman and Gypsum land (hummocky) soils at the High Energy Laser System Test Facility (HELSTF) represent wind deposits from recently desiccated lacustrine deposits and deposits from the ancestral Lake Otero. The upper 15-20 feet of the subsurface consists of varved gypsiferous clay and silt. Below these surfidai deposits the lithology consists of interbedded clay units, silty-clay units, and fine- to medium-grained quartz arenite units in continuous and discontinuous horizons. Clay horizons can cause perched water above the water table. Analyses of selected clay samples indicate that clay units are composed chiefly of kaolinire and mixed-layer illite/ smectite. The main aquifer is representative of a leaky-confined aquifer. Estimated aquifer properties are: transmissivity (T) = 780 feet squared per day, storage coefficient (S) = 3.1 x 10-3, and hydraulic conductivity (K) = 6.0 feet per day. Ground water flows south and southwest; the estimated hydraulic gradient is 5.3 feet per mile. Analyses of water samples indicate that ground water at the HELSTF site is brackish to slightly saline at the top of the main aquifer. Dissolved-solids concentration near the top of the main aquifer ranges from 5,940 to 11,800 milligrams per liter. Predominant ions are sodium and sulfate. At 815 feet below land surface, the largest dissolved-solids concentration measured is 111,000 milligrams per liter, which indicates increasing salinity with depth. Predominant ions are sodium and chloride.

Water-Resources Investigations Report↗

USGS1972

Water supply for the Nuclear Rocket Development Station at the U.S. Atomic Energy Commission's Nevada Test Site

The Nuclear Rocket Development Station, in Jackass Flats, occupies about 123 square miles in the southwestern part of the U.S. Atomic Energy Commission's Nevada Test Site. Jackass Flats, an intermontane valley bordered by highlands on all sides except for a drainage outlet in the southwestern corner, has an average annual rainfall of 4 inches. Jackass Flats is underlain by alluvium, colluvium, and volcanic rocks of Cenozoic age and, at greater depth, by sedimentary rocks of Paleozoic age. The alluvium and the colluvium lie above the saturated zone throughout nearly all of Jackass Flats. The Paleozoic sedimentary rocks contain limestone and dolomite units that are excellent water producers elsewhere ; however, these units are too deep in Jackass Flats to be economic sources of water. The only important water-producing unit known in the vicinity of the Nuclear Rocket Development Station is a welded-tuff aquifer, the Topopah Spring Member of the Paintbrush Tuff, which receives no significant recharge. This member contains about 500 feet of highly fractured rock underlying an area 11 miles long and 3 miles wide in western Jackass Flats. Permeability of the aquifer is derived mostly from joints and fractures; however, some permeability may be derived from gas bubbles in the upper part of the unit. Transmissivity, obtained from pumping tests, ranges from 68,000 to 488,000 gallons per day per foot. Volume of the saturated part of the aquifer is about 3.5 cubic miles, and the average specific yield probably ranges from 1 to 5 percent. The volume of ground water in storage is probably within the range of 37-187 billion gallons. This large amount of water should be sufficient to supply the needs of the Nuclear Rocket Development Station for many years. Water at the Nuclear Rocket Development Station is used for public supply, construction, test-cell coolant, exhaust cooling, and thermal shielding during nuclear reactor and engine testing, and washdown. Present (1967) average consumption of water is 520,000 gallons per day--all supplied by one well. This supply well and a standby well have a production capability of 1.6 million gallons per day--adequate for present needs. Water in the welded-tuff aquifer is of the sodium bicarbonate type. Dissolved-solids content of the water in Jackass Flats is in the general range 230 milligrams per liter in the western part to 890 milligrams per liter in the eastern part.

Water Supply Paper↗

USGS1998

Using chloride and chlorine-36 as soil-water tracers to estimate deep percolation at selected locations on the U.S. Department of Energy Hanford Site, Washington

A chloride mass-balance method and a chlorine-36 isotope bomb-pulse method were used to estimate long-term average rates of deep percolation at at the U.S. Department of Energy Hanford Site. Because the bomb-pulse method typically gives an upper limit and the mass-balance method may underestimate, estimates from both methods probably bracket actual rates.

Water Supply Paper↗

USGS2018

Energy-rich mesopelagic fishes revealed as a critical prey resource for a deep-diving predator using quantitative fatty acid signature analysis

Understanding the diet of deep-diving predators can provide essential insight to the trophic structure of the mesopelagic ecosystem. Comprehensive population-level diet estimates are exceptionally difficult to obtain for elusive marine predators due to the logistical challenges involved in observing their feeding behavior and collecting samples for traditional stomach content or fecal analyses. We used quantitative fatty acid signature analysis (QFASA) to estimate the diet composition of a wide-ranging mesopelagic predator, the northern elephant seal ( Mirounga angustirostris ), across five years. To implement QFASA, we first compiled a library of prey fatty acid (FA) profiles from the mesopelagic eastern North Pacific. Given the scarcity of a priori diet data for northern elephant seals, our prey library was necessarily large to encompass the range of potential prey in their foraging habitat. However, statistical constraints limit the number of prey species that can be included in the prey library to the number of dietary FAs in the analysis. Exceeding that limit could produce non-unique diet estimates (i.e., multiple diet estimates fit the data equally well). Consequently, we developed a novel ad-hoc method to identify which prey were unlikely to contribute to diet and could, therefore, be excluded from the final QFASA model. The model results suggest that seals predominantly consumed small mesopelagic fishes, including myctophids (lanternfishes) and bathylagids (deep sea smelts), while non-migrating mesopelagic squids comprised a third of their diet, substantially less than suggested by previous studies. Our results revealed that mesopelagic fishes, particularly energy-rich myctophids, were a critical prey resource, refuting the long-held view that elephant seals are squid specialists.

Frontiers in Marine Science↗

USGS2023

Improving the operational simplified surface energy balance evapotranspiration model using the forcing and normalizing operation

Actual evapotranspiration modeling is providing useful information for researchers and resource managers in agriculture and water resources around the world. The performance of models depends on the accuracy of forcing inputs and model parameters. We developed an improved approach to the parameterization of the Operational Simplified Surface Energy Balance (SSEBop) model using the Forcing and Normalizing Operation (FANO). SSEBop has two key model parameters that define the model boundary conditions. The FANO algorithm computes the wet-bulb boundary condition using a linear FANO Equation relating surface temperature, surface psychrometric constant, and the Normalized Difference Vegetation Index (NDVI). The FANO parameterization was implemented on two computing platforms using Landsat and gridded meteorological datasets: (1) Google Earth Engine (GEE) and (2) Earth Resources Observation and Science (EROS) Center Science Processing Architecture (ESPA). Evaluation was conducted by comparing modeled actual evapotranspiration ( ETa ) estimates with AmeriFlux eddy covariance (EC) and water balance ETa from level-8 Hydrologic Unit Code sub-basins in the conterminous United States. FANO brought substantial improvements in model accuracy and operational implementation. Compared to the earlier version (v0.1.7), SSEBop FANO (v0.2.6) reduced grassland bias from 47% to −2% while maintaining comparable bias for croplands (11% versus −7%) against EC data. A water balance-based ETa bias evaluation showed an overall improvement from 7% to −1%. Climatology versus annual gridded reference evapotranspiration ( ETr ) produced comparable ETa results, justifying the use of climatology ETr for the global SSEBop Landsat ETa that is accessible through the ESPA website. Besides improvements in model accuracy, SSEBop FANO increases the spatiotemporal coverage of ET modeling due to the elimination of high NDVI requirements for model parameterization. Because of the existence of potential biases from forcing inputs and model parameters, continued evaluation and bias corrections are necessary to improve the absolute magnitude of ETa for localized water budget applications.

Remote Sensing↗

USGS2013

Actual evapotranspiration (water use) assessment of the Colorado River Basin at the Landsat resolution using the operational simplified surface energy balance model

Accurately estimating consumptive water use in the Colorado River Basin (CRB) is important for assessing and managing limited water resources in the basin. Increasing water demand from various sectors may threaten long-term sustainability of the water supply in the arid southwestern United States. We have developed a first-ever basin-wide actual evapotranspiration (ET a ) map of the CRB at the Landsat scale for water use assessment at the field level. We used the operational Simplified Surface Energy Balance (SSEBop) model for estimating ET a using 328 cloud-free Landsat images acquired during 2010. Our results show that cropland had the highest ET a among all land cover classes except for water. Validation using eddy covariance measured ET a showed that the SSEBop model nicely captured the variability in annual ET a with an overall R 2 of 0.78 and a mean bias error of about 10%. Comparison with water balance-based ETa showed good agreement (R 2 = 0.85) at the sub-basin level. Though there was good correlation (R 2 = 0.79) between Moderate Resolution Imaging Spectroradiometer (MODIS)-based ETa (1 km spatial resolution) and Landsat-based ET a (30 m spatial resolution), the spatial distribution of MODIS-based ET a was not suitable for water use assessment at the field level. In contrast, Landsat-based ET a has good potential to be used at the field level for water management. With further validation using multiple years and sites, our methodology can be applied for regular production of ET a maps of larger areas such as the conterminous United States.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2008

Maternal characteristics versus egg size and energy density: do stocked lake trout in Lake Ontario experience premature reproductive senescence?

Observations from September 1994 and 1997 collections of hatchery-origin, mature female lake trout ( Salvelinus namaycush ) from Lake Ontario indicated that egg mass decreased with age, fueling the notion that stocked fish experienced premature reproductive senescence. Supplemental collections during September 2002 and November 2002-2004 were combined with the 1994 and 1997 samples to examine whether sample date or maternal age, body mass, condition (K), egg count, or strain were related to egg mass or energy content (percentage dry mass [%DM]). Body mass was correlated with egg mass for age ≥ 8 lake trout sampled in September, and egg count was correlated with egg mass for September age-6 lake trout only. Within each month, egg mass was not related to K or egg %DM, however, egg %DM was 1.52% greater (P ≤ 0.0247) in November than in September which is equivalent to a 110 cal/g difference. Samples were grouped for the three most abundant strains (Seneca, Superior, and Ontario) after finding no strain or year effects from our 1994 and 1997 samples and based on life history data from the literature and our assessment sampling. Further analysis indicated that September egg masses were greater for fish ages ≤ 6 than for fish ages ≥ 8. The age effect disappeared in November when mean egg mass across all ages (0.078 g) was greater than September means (P < 0.0005) for ages -5 (0.054 g), -6 (0.057 g) and ≥ 8 (0.041 g). Our results indicate that the decrease in egg mass with female age in September was not due to senescence, but to oogenesis being closer to completion in young age-5 and -6 fish than in older individuals.

Journal of Great Lakes Research↗

USGS2012

Female Agassiz’s desert tortoise activity at a wind energy facility in southern California: The influence of an El Niño event

We compared spring-summer activity of adult female Agassiz’s Desert Tortoises ( Gopherus agassizii ) among three consecutive years (1997, 1998, and 1999) that differed dramatically in winter rainfall and annual plant production at a wind energy facility in the Sonoran Desert of southern California. Winter rainfall was approximately 71%, 190%, and 17% of the long-term average (October-March = 114 mm) for this area in water years (WY) 1997, 1998, and 1999, respectively. The substantial precipitation caused by an El Niño Southern Oscillation (ENSO) event in WY 1998 produced a generous annual food plant supply (138.2 g dry biomass/ m 2 ) in the spring. Primary production of winter annuals during below average rainfall years (WY 1997 and WY 1999) was reduced to 98.3 and 0.2 g/m 2 , respectively. Mean rates of movement and mean body condition indices (mass/length) did not differ significantly among the years. The drought year following ENSO (WY 1999) was statistically similar to ENSO in every other measured value, while WY 1997 (end of a two year drought) was statistically different from ENSO using activity area, minimum number of burrows used, and percentage of non-movements. Our data suggest that female G. agassizii activity can be influenced by environmental conditions in previous years.

California↗

USGS2011

Long-term post-fire effects on spatial ecology and reproductive output of female Agassiz’s desert tortoises ( Gopherus agassizii ) at a wind energy facility near Palm Springs, California, USA

We studied the long-term response of a cohort of eight female Agassiz’s desert tortoises ( Gopherus agassizii ) during the first 15 years following a large fire at a wind energy generation facility near Palm Springs, California, USA. The fire burned a significant portion of the study site in 1995. Tortoise activity areas were mapped using minimum convex polygons for a proximate post-fire interval from 1997 to 2000, and a long-term post-fire interval from 2009 to 2010. In addition, we measured the annual reproductive output of eggs each year and monitored the body condition of tortoises over time. One adult female tortoise was killed by the fire and five tortoises bore exposure scars that were not fatal. Despite predictions that tortoises would make the short-distance movements from burned to nearby unburned habitats, most activity areas and their centroids remained in burned areas for the duration of the study. The percentage of activity area burned did not differ significantly between the two monitoring periods. Annual reproductive output and measures of body condition remained statistically similar throughout the monitoring period. Despite changes in plant composition, conditions at this site appeared to be suitable for survival of tortoises following a major fire. High productivity at the site may have buffered tortoises from the adverse impacts of fire if they were not killed outright. Tortoise populations at less productive desert sites may not have adequate resources to sustain normal activity areas, reproductive output, and body conditions following fire.

California↗

USGS2024

In situ lung dust analysis by automated Field Emission Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy: A method for assessing inorganic particles in tissue from coal miners

Context.— Overexposure to respirable coal mine dust can cause severe lung disease including progressive massive fibrosis (PMF). Field emission scanning electron microscopy with energy dispersive x-ray spectroscopy (FESEM-EDS) has been used for in situ lung dust particle analysis for evaluation of disease etiology. Automating such work can reduce time, costs, and user bias. Objective.— To develop and test an automated FESEM-EDS method for in situ analysis of inorganic particles in coal miner lung tissue. Design.— We programmed an automated FESEM-EDS procedure to collect particle size and elemental data, using lung tissue from 10 underground coal miners with PMF and 4 control cases. A statistical clustering approach was used to establish classification criteria based on particle chemistry. Data were correlated to PMF/non-PMF areas of the tissue, using corresponding brightfield microscopy images. Results for each miner case were compared with a separate corresponding analysis of particles recovered following tissue digestion. Results.— In situ analysis of miner tissues showed higher particle number densities than controls and densities were generally higher in PMF than non-PMF areas. Particle counts were typically dominated by aluminum silicates with varying percentages of silica. Compared to digestion results for the miner tissues, in situ results indicated lower density of particles (number per tissue volume), larger size, and a lower ratio of silica to total silicates—probably due to frequent particle clustering in situ. Conclusions.— Automated FESEM-EDS analysis of lung dust is feasible in situ and could be applied to a larger set of mineral dust–exposed lung tissues to investigate specific histologic features of PMF and other dust-related occupational diseases.

Archives of Pathology↗

USGS2006

Comparing protein and energy status of winter-fed white-tailed deer

Although nutritional status in response to controlled feeding trials has been extensively studied in captive white-tailed deer (Odocoileus virginianus), there remains a considerable gap in understanding the influence of variable supplemental feeding protocols on free-ranging deer. Consequently, across the northern portion of the white-tailed deer range, numerous property managers are investing substantial resources into winter supplemental-feeding programs without adequate tools to assess the nutritional status of their populations. We studied the influence of a supplemental winter feeding gradient on the protein and energy status of free-ranging white-tailed deer in the Adirondack Mountains of New York. We collected blood and fecal samples from 31 captured fawns across 3 sites that varied considerably in the frequency, quantity, and method of supplemental feed distribution. To facilitate population-wide comparisons, we collected fresh fecal samples off the snow at each of the 3 sites with supplemental feeding and 1 reference site where no feeding occurred. Results indicated that the method of feed distribution, in addition to quantity and frequency, can affect the nutritional status of deer. The least intensively fed population showed considerable overlap in diet quality with the unfed population in a principal components ordination, despite the substantial time and financial resources invested in the feeding program. Data from fecal samples generally denoted a gradient in diet quality and digestibility that corresponded with the availability of supplements. Our results further demonstrated that fecal nitrogen and fecal fiber, indices of dietary protein and digestibility, can be estimated using regressions of fecal pellet mass, enabling a rapid qualitative assessment of diet quality.

Wildlife Society Bulletin↗