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Assessing wild juvenile trout ecology in the lower Mountain Fork

Reservoir tailwaters can be valuable fisheries for Rainbow Trout ( Oncorhynchus mykiss ), which is commonly stocked as mitigation for the altered habitat because it performs well as a put-and-take species in these thermally depressed systems. These fisheries are usually sustained by stocking due to flow fluctuations and lack of suitable spawning habitat that may limit natural reproduction. The Lower Mountain Fork River (LMFR) below Broken Bow Dam in southeastern Oklahoma is one of two year-round trout fisheries in the state and wild, juvenile Rainbow Trout were documented beginning in 2006, prompting speculation about the potential for a self-sustaining population. To determine this potential, we searched several sites over two years throughout the LMFR for wild, juvenile Rainbow Trout to estimate several parameters related to their population status (e.g., age, growth, time of spawning and hatching, and prey use). We also assessed the availability of macroinvertebrate prey to determine how food resources may affect trout sustainability. We found wild, juvenile Rainbow Trout each year, but only at sites within the first 4.5 km of the 19-km tailwater. Juvenile trout were the result of spawning that took place from late January through mid-April. Growth and body condition were variable between years, but similar to other systems. Weekly survival estimates using catch curves were low (<80%), suggesting limited potential for recruitment; however, declining catchability of larger juvenile fish likely biased these estimates. Wild, juvenile Rainbow Trout ate a variety of food items, but selected for Amphipoda and Diplostraca and against Trichoptera. Overlap in diet with adult Rainbow Trout was low (Bray-Curtis dissimilarity = 0.70). Macroinvertebrate prey resources available to trout varied among management zones, being most abundant in Zone 1 and Zone 3. Potential for a wild fishery may exist in the upper portion of the LMFR but additional research on recruitment to adulthood would be required to provide a more definitive answer.

Oklahoma↗

Brook Floater rapid assessment monitoring protocol

The Brook Floater ( Alasmidonta varicosa ) is a small (<100 mm), stream dwelling freshwater mussel (Family: Unionidae) from Atlantic Slope drainages in the eastern U.S. (Nedeau 2008). Brook Floater have dramatically contracted in distribution over recent decades, and there is limited evidence of recruitment in most locations, despite minimal effort to document population status (Wicklow et al., 2017). Brook Floater is listed as a Species of Greatest Conservation Need (SGCN) throughout its range in the United States (state-listed as imperiled or critically imperiled in all 15 states), has been extirpated from two states (Rhode Island and Delaware) and was recently petitioned for Federal listing in 2011 (Wicklow et al. 2017). Currently, there is a U.S. Fish and Wildlife (USFWS) Species Status Assessment underway to determine if federal listing under the Endangered Species Act is warranted. Brook Floater is also listed as a species of special concern in Canada, the northern extent of its range. In 2016, a state wildlife grant was awarded to develop range-wide conservation initiatives and strategies, including the development of rapid assessment and long-term monitoring techniques, in addition to developing conservation strategies to improve its probability of persistence in the future. The purpose of this protocol is to describe and facilitate a rapid approach to estimating Brook Floater occupancy to better understand the factors that influence Brook Floater distribution. Occupancy estimation approaches allow for estimation of species occupancy (; percent area occupied) within some scale of interest (for our purposes, the watershed), while simultaneously estimating species detection probability (p; the probability of finding an organism, if present). Occupancy estimation has been used with many wildlife taxa and is essential for understanding the presence or absence of wildlife in a particular area while accounting for imperfect detection (i.e., p<1; MacKenzie et al. 2004, Shea et al. 2013, Wisniewski et al. 2013, Pandolfo et al. 2016, MacKenzie 2016). This approach does not rely on existing information about species presence or absence to select sites. Occupancy estimation operates on a robust probabilistic framework of randomly selected sites to infer what proportion of sites are occupied. Occupancy estimation also incorporates imperfect detection (p <1; i.e., animals are cryptic and elusive; observers have varying experience searching, etc.; MacKenzie et al. 2003). For example, two mussel species that occupy a site might have two very different detection histories, as determined by revisiting a site and using the same methods on repeated visits to find both species. See hypothetical results here: Visits 1 2 3 4 5 Mussel species A 1 1 1 0 1 Mussel species B 0 0 0 1 0 (1 = detected, 0=not detected) Both of these mussel species occupy this site, yet Mussel A was detected in 4 out of 5 visits (high p) and Mussel B was detected in 1 out of 5 visits (low p) with the methods used to survey this site. Covariates may explain differences in detection between species or visits. Organisms may be: 1) present and not observed, 2) present and unavailable for capture (i.e., buried in sediment), or 3) not present at the site. Occupancy estimation uses repeated visits of randomly selected sites to build species detection histories (i.e., 1, 0, 1) to simultaneously estimate occupancy () and p. Typically, repeated visits are discrete sampling events and are more time consuming because each site requires >3 separate visits. In our rapid assessment protocol, we use multiple independent observers searching longitudinal lanes to estimate detection in a single site visit as opposed to multiple discrete visits. Below are hypothetical results of occupancy by observer: Independent Observers 1 2 3 4 5 Mussel species A 1 1 0 1 1 Mussel species B 1 0 0 1 0 (1 = detected, 0=not detected) Objectives: The objectives of this rapid assessment survey approach are to guide collection of data that can be used to: A. Estimate the occupancy of Brook Floater within watersheds. B. Estimate the effects of reach- and watershed-scale habitat features on Brook Floater occurrence. C. Understand how survey covariates (e.g., surveyor experience) influence detection of Brook Floater. While this protocol explicitly targets collection of Brook Floater, it is likely that the methods can be adapted for occupancy surveys of other stream-dwelling freshwater mussel species.

Cooperator Science Series↗

The Factors Affecting Female Black Bear Harvest Rates in Pennsylvania

Pennsylvania’s black bear ( Ursus americanus ) population increased in abundance and distribution during the latter third of the 20th century, leading to an increase in human-bear conflicts. Increases in harvest opportunities from 2002–2018 aimed to stabilize black bear population growth but did not substantially increase harvest, and annual harvest was often below the desired goal of 20% removal. Consequently, additional changes to Pennsylvania’s black bear hunting seasons occurred from 2019–2021, including starting harvest earlier, expanding the length of seasons, and adding additional seasons (i.e., a muzzleloader and special rifle season). Understanding how earlier harvest seasons and new methods of take (i.e., muzzleloader) influence female black bear harvest vulnerability is important to informing harvest management. We trapped and GPS-collared adult female bears in the Sproul State Forest in northcentral Pennsylvania from 2019–2021 to determine home range sizes, patterns of resource selection, and sources of mortality during fall harvest seasons. We assessed annual variability in relative abundance of fall hard mast. We evaluated temporal and spatial variation in hunter activity with road-side surveys and remote camera traps, respectively. We estimated fall and weekly home range size with utilization distributions through an autocorrelated kernel density estimation and evaluated the influence of predictors hypothesized to influence third-order resource selection using generalized linear mixed models. We investigated factors hypothesized to influence female black bear survival during hunting seasons with known-fate models. Mean fall home range size was 248.7 km 2 (range = 6.1–2636.1 km 2 ). Home range sizes varied by year and were generally smaller during archery harvest season than other periods. Patterns of weekly resource selection indicated bears selected steeper slopes and higher elevations outside of harvest seasons but shifted to less-steep areas in the week before harvest and the first week of harvest, and to lower elevations during harvest. Bears selected for areas containing oak ( Quercus spp.) trees throughout the fall. Survival was lower in older age bears, greater relative mast abundance conditions, steeper slopes, and areas of greater hunter space use during the general firearms season. Survival was higher in areas of greater hunter space use during archery season. Harvest rate of adult female bears was 0.345 in 2019, 0.321 in 2020, and 0.150 in 2021, and averaged 0.272 across all three years. The probability of an adult female black bear surviving all harvest seasons each year was 0.611 (SE = 0.086, 95% CI = 0.436, 0.761). The high harvest rate and low predicted survival may lead to population reduction.

Pennsylvania↗

Effects of sucker gigging on fish populations in Oklahoma scenic rivers

Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is needed to determine safe levels of sucker harvest that ensure sustainability of sucker gigging and protect overall ecosystem function. The objectives of this study were to: 1) determine the spatial distribution of common sucker species during spawning season (when sucker gigging is most effective), 2) determine the population size, age structure , and total mortality rate for common sucker species, and 3) model the effects of different harvest rates on sucker populations to determine the harvest rate at which growth overfishing and recruitment overfishing begin. Suckers were sampled using electrofishing, modified fyke netting, gillnetting, hoop netting, and seining and marked with passive integrated transponder (PIT) tags to provide information about population size, demographics, and coarse-scale movement patterns. A subset of fish sampled using the above gears and additional fish collected during gigging tournaments in 2017-2019 and 2021-2022 (no tournament was held in 2020) were used for age analyses. Tournament data collected prior to the initiation of this project were obtained from the state agency. Data from gigging tournaments indicated Golden Redhorse Moxostoma erythrurum, Black Redhorse M. duquesnei, White Sucker Catostomus commersonii, and Spotted Sucker Minytrema melanops were vulnerable to gigging harvest. Selection by giggers for larger individuals was apparent for all species except Golden Redhorse in 2019. Spotted Suckers constituted most fish harvested, but the proportion of each species harvested still varied among years. A total of 943 fish were aged from samples obtained from 2017 to 2022 and results from subsequent analyses indicated a high degree of variation in growth rates within and among species. Over 4,700 suckers were tagged with PIT tags and over 400 recaptures of these tagged fish were made since autumn 2018. Preliminary analyses indicate survival was consistent across samples and species, and detection rates varied by sampling event (3-month periods). Our most likely top multistrata model suggested that a large portion of fish within the upper Spavinaw, lower Spavinaw, and reservoir sections remain in these locations year-round (means: 0.46 – 0.67). Despite this, transition probabilities are still high for movement from upper Spavinaw to lower Spavinaw (mean: 0.32) and from lower Spavinaw to upper Spavinaw (mean: 0.38). Likewise, transition probabilities were high for movement from lower Spavinaw to the reservoir (mean: 0.15) and from the reservoir to lower Spavinaw (mean: 0.32). Transition probabilities between upper Spavinaw and the reservoir were low in both directions (means < 0.01). Population sizes, growth trajectories and length-weight relationships varied among species. Preliminary harvest models suggest species-specific regulation may be scientifically appropriate; however, it may be difficult for giggers to identify species while gigging. Based on our model results, there appears to be little risk of recruitment or growth overfishing for any species at current exploitation levels.

Oklahoma↗

Updated decision analysis to inform multi-species salmonine management in Lake Michigan

The recreational fishery for salmonine species in Lake Michigan (lake trout, Chinook salmon, coho salmon, steelhead, and brown trout) is largely maintained through stocking. Decisions about how many of each species to stock require an understanding of how to maintain a sustainable balance of predators (salmonine species) to prey (alewife) in the lake. The current models used to make these decisions can estimate the ratio of Chinook salmon to alewife in the lake. However, the Lake Michigan Committee’s new stocking strategy aims to incorporate the other salmonine species into this predator-prey ratio. We used structured decision making to evaluate potential stocking strategies. We worked with fishery stakeholders and members of the Lake Michigan Committee, conducted participatory modeling to forecast outcomes of stocking scenarios using updated information on fish movement and feeding, and evaluated the risk of these stocking strategies. Most of the stocking practices we evaluated resulted in a high risk of large declines in alewife abundance, negatively affecting future salmon fisheries. The forecasts were substantially more pessimistic than those resulting from a similar analysis conducted a decade earlier, apparently due to more recent alewife assessments indicating lower alewife productivity (recruits per spawner). Alewife recruitment dynamics is an area of substantial uncertainty, with apparently large consequences for management; decision makers on Lake Michigan would benefit from greater understanding of alewife recruitment dynamics to reduce this uncertainty when accounting for risks.

Lake Michigan↗

Agent-based modeling of movements and habitat selection by mid-continent mallards

We found that the absence of existing conservation measures would reduce wintering mallard population size by ~70-80%, underlining the importance of current wetland easements for waterfowl foraging. Under standard conditions, the partial active flooding of easements later in the season and the upgrading of unmanaged wetlands to managed status resulted in greatest mallard populations, indicating that active flooding (stored water release) was able to considerably increase carrying capacity under strong drought conditions.

Cooperator Science Series↗

Comparing harvest management alternatives for Eastern Wild Turkeys in Alabama

Eastern wild turkey ( Meleagris gallopavo silvestris ; hereafter turkey) is an important game species that is pursued by thousands of Alabama hunters each spring. Biologists in Alabama and other parts of the southeastern U.S. believe that turkey populations have been declining for at least two decades. Managers in many state agencies and organizations believe that liberal spring bag limits and the timing of hunting seasons are contributing to this decline. We used an expert-driven approach to develop models of turkey populations that predicted the outcomes of spring harvest management alternatives. The models were based on recent research and expert judgement regarding the effects of spring hunting regulations on turkey vital rates. We then used the relationship between the expected spring density of adult males and expected harvest elicited from experts to compare the values of the alternatives over a 30-year period. Our model suggests that if later opening dates result in increased turkey productivity and increased harvest, the result will be larger turkey populations, increased harvest, and greater value to stakeholders. In 84% of deterministic projections from 27,951 different initial populations, the highest valued alternative was to open seasons later, reduce bag limits, and shorten the season. This alternative also was best in 48% of projections that included parametric uncertainty. These results were used to produce a decision-support tool, that could be used to guide decisions about spring hunting regulations for turkeys in Alabama, and updated using the results of monitoring programs. Further research is needed to more precisely estimate the causes and effects of spring hunting seasons on turkey vital rates.

Alabama↗

Germination information for common Arizona restoration species

Seed-based ecological restoration is an approach used to revegetate damaged and disturbed habitats by spreading seed with the expectation that germination will occur and plants will become established and flourish. Although restoration can enhance the health and productivity of landscapes by reinvigorating ecosystem services both directly and indirectly, successful restoration is difficult to achieve – particularly in arid systems (Copeland et al. 2018). Germination is a well known bottleneck to plant growth that prohibits successful restoration (James at al. 2011).

Cooperative Extension Publication↗

Trends in colony sizes for five colonial waterbird species in the Atlantic Flyway

Robust estimates of colonial waterbird (CWB) breeding population trends are deficient owing to a lack of range wide, standardized survey efforts. Evaluating conservation priorities and effectiveness of management requires reliable trend estimates across multiple spatial scales. One potential data source for CWB trend estimation is the Colonial Waterbird Database, created in 2003 by U.S. Geological Survey and the U.S. Fish and Wildlife Service and intermittently updated since then. The database combines state or provincial survey data, particularly from the United States Atlantic Flyway, with historical colony counts obtained from publications. We combined recently collected survey data from Atlantic Flyway states and provinces with data archived in the database to generate population size trend estimates for five species: Double-crested Cormorant ( Phalacrocorax auritus ), Laughing Gull ( Leucophaeus atricilla ), Least Tern ( Sternula antillarum ), Common Tern ( Sterna hirundo ), and Black Skimmer ( Rynchops niger ). These species represent two actively managed conflict species and three species of conservation concern, respectively. We used mixed effects models to fit an exponential growth model to determine yearly trends in populations at Atlantic Flyway- and state-scales with survey data collected between 1964 and 2019. Direction of within-state trend estimates varied. Trends for some species (Common Tern, Laughing Gull) were increasing in northern states and decreasing further south. At the Flyway scale, Double-crested Cormorant increased (2.08 ± 0.28 % year-1) and Least Tern (-1.40 ± 0.36 % year-1) and Black Skimmer (-1.13 ± 0.68 % year -1) decreased, while Flyway-scale trends in Common Tern and Laughing Gull were not significant. Our analysis provides cross-state trend estimates to inform CWB management actions along the Atlantic Flyway.

Cooperator Science Series↗

Structured decision-making workshop: Chronic wasting disease management in free-ranging cervids in Massachusetts

This document describes the results of a 2.5-day rapid decision prototype workshop that evaluated management activities for chronic wasting disease (CWD) in Massachusetts (MA) that were either proactive (i.e., actions taken prior to CWD arrival/detection) or reactive (i.e., actions taken after CWD arrival/detection). The workshop was led by members of the Wildlife Section of the MA Division of Fisheries and Wildlife (hereafter referred to as MassWildlife) and included a group of agency communications specialists and district managers. U. S. Geological Survey staff and a volunteer acted as decision facilitators and led the analysis of the decision. Chronic wasting disease is an always fatal neurological disease that has spread across much of North America and threatens the health of deer populations in locations where it occurs (reviewed by Escobar et al. 2020). CWD can spread into new areas via two general mechanisms: (1) natural spread (e.g., dispersal of CWD-infected male white-tailed deer [Odocoileus virginianus]), and (2) anthropogenic spread (e.g., CWD spread facilitated by human intervention; Leiss et al. 2017, Escobar et al. 2020). Once CWD arrives in a state, natural resources agencies spend eight times more on CWD than agencies with no known cases; to cover these new CWD-related management activities, the natural resources agencies are typically forced to reallocate money from existing conservation priorities (Chiavacci, 2022). As of May 2024, there were 34 U.S. states and five Canadian provinces that had detected CWD positive free-ranging and/or captive animals in the family Cervidae (collectively referred to as ‘cervid’ hereafter), and the number of new states/provinces that are detecting CWD for the first time continues to grow (U. S. Geological Survey, May 2024). As of February 2024, the closest CWD positive state to MA with CWD detected in free-ranging white-tailed deer is Pennsylvania. To date, there have been no detections of CWD in MA, but testing has been limited in MA since 2012. The growing number of CWD positive states suggests that there may be increasing risk of CWD entering and establishing in MA as the number of CWD cases increases across North America. According to a 2023 survey of hunters in MA conducted by MassWildlife, 68% of hunters were concerned about CWD entering MA, and 88% of respondents said that it was at least moderately important to keep CWD out of MA; these survey results indicate that most hunters may support CWD risk reduction actions (Martin Feehan, Massachusetts Division of Fisheries and Wildlife, oral communication, 12 Feb 2024). In addition, 23.1% of responding deer hunters in MA have hunted for cervids in CWD-positive states/provinces in the last five years (not including states/provinces that have been able to successfully eradicate CWD following a positive detection). Participants of the survey were also asked, “how many deer have you harvested that tested positive for CWD?”. A total of three respondents said that they had one deer test positive for CWD, which, when extended to the whole population of MA deer hunters, results in an estimated 32 CWD positive deer harvested in CWD-positive states and imported into MA in the last five years. When asked about how they transport harvested deer from out of state into MA, the three participants indicated either “already processed & packaged” or “not applicable.” Note, that in MA, it is a violation of regulation to import whole carcasses or high-risk parts (e.g., head, brain, spinal tissues, bones) of any member of the Cervidae family (wild or captive) from a state/province that has detected CWD; it is legal to bring in deboned meat, cleaned skull caps, hides without the head, or a fixed taxidermy mount (Massachusetts Division of Fisheries and Wildlife, 2024a). To date, testing for CWD has been limited in MA since 2012. However, the data collected from the 2023 MA hunter survey suggests that there is a real risk of CWD being imported by a MA resident who has hunted in a CWD positive state. Therefore, given the higher costs of CWD management post arrival, the potential natural spread of CWD from nearby states, and the risk of CWD introduction via humanmediated cervid movement, MassWildlife is motivated to take actions that minimize the risk of CWD introduction and spread in MA with the ultimate goal of managing thriving wildlife populations and maximizing hunter and general public satisfaction, which are both parts of the MassWildlife mission. A 2.5-day rapid prototyping structured decision making workshop was held with MassWildlife staff to develop a decision framework for CWD management in MA. During the workshop, we defined the context and extent of CWD management activities in MA. Next, we identified four fundamental objectives that help achieve the mission of MassWildlife and that address stakeholder concerns. The fundamental objectives included: (1) maximizing hunter satisfaction and participation, (2) maximizing public satisfaction (non-consumptive), (3) maximizing health and sustainability of cervids, and (4) maximizing the efficiency of CWD management. Then, we generated a list of five alternatives (i.e., strategies) that varied the intensity of proactive and reactive actions. The five strategies were: (1) minimal proactive and minimal reactive actions, (2) intermediate proactive and intermediate reactive actions, (3) intensive proactive and intermediate reactive actions, (4) minimal proactive and intensive reactive actions, and (5) intensive proactive and intensive reactive actions. Lastly, we estimated the performance of each strategy on the fundamental objectives and assessed the overall performance of strategies relative to one another. We did so by first estimating the consequences of each alternative strategy on fundamental objectives using expert elicitation, and then, we elicited objective weights from MassWildlife staff to incorporate the relative importance of different fundamental objectives. Given that it is unknown when CWD will arrive in MA, we evaluated the performance of alternative strategies against fundamental objectives given three distinct scenarios for time to arrival of CWD: introduction in 2.5, 7.5, or 10+ years. The preliminary results of the rapid prototype indicate that the performance of the CWD management strategies that we evaluated depends on when CWD first arrives in MA. If CWD were to arrive in 2.5 or 7.5 years from now (February, 2024), then the ‘minimal proactive and minimal reactive’ strategy performs the best on both the deer population and cost fundamental objectives (fundamental objectives 3 & 4), but the ‘intensive proactive and intensive reactive’ strategy performs best on both of the human dimensions fundamental objectives (fundamental objectives 1 & 2) as well as the minimize CWD prevalence objective (also related to fundamental objective 3). We also found that public trust is likely to remain high across all five alternative strategies if CWD arrives after year 10, but public trust decreases if CWD arrives in year 2.5 or 7.5. After incorporating objective weights, we found that in scenarios where CWD arrives in the near-term (in years 2.5 or 7.5), an intermediate strategy (e.g., ‘intermediate proactive and intermediate reactive’ or ‘intensive proactive and intermediate reactive’) performed best, and the ‘minimal proactive and intensive reactive’ strategy performed worst. Conversely, if CWD were to arrive after 10 years, then the ‘minimal proactive and minimal reactive’ and ‘minimal proactive and intensive reactive’ strategies performed best. Collectively, these results suggest that the decision on which alternative strategy to employ is sensitive to when CWD arrives in MA. Following the discussion of the preliminary results, we identified the following four next steps. First, we discussed how a more detailed communications plan is needed and would likely alter the performance estimates of the alternative strategies on fundamental objectives 1 & 2, which were hunter and public satisfaction, respectively. The development of the communication plan would likely be easier once the alternative actions have been identified along with the audience and message. Second, a surveillance plan could be a useful tool to inform CWD management. Surveillance for CWD was performed in MA annually from 2002 to 2012 (n = 4,356 wild white-tailed deer and moose [Alces alces] samples). Limited surveillance was conducted from 2013 to 2022; and in 2023, 242 wild samples were collected. It is not clear whether MA needs a robust or minimal surveillance plan (e.g., is a minimal surveillance plan enough to detect the pathogen at the threshold that would trigger action?), or what type of invasion event the surveillance plan should target (e.g., natural vs anthropogenic spread events). The use of decision trees and a formal risk assessment may help answer these questions. Third, some of the elicited estimates from experts during this rapid prototype could be replaced with empirical data. Lastly, given that the decision was sensitive to when CWD arrived in MA and a surveillance plan would rely on the mode of introduction, forecasting and predicting the CWD invasion front and/or the likelihood of different incursion events across MA would provide valuable insights.

Massachusetts↗

Using environmental DNA (eDNA) to assess the presence of cavefish and cave crayfish populations in caves of the Ozark Highlands

Many cavefishes and cave crayfishes are considered of conservation concern; however, sampling these species is inherently difficult given their occupied environments. The goal of our project was to verify the presence of select karst organisms while developing the foundation for sampling approaches that might be useful to conservation and management agencies. Our project objectives were to develop assays to amplify deoxyribonucleic acid (DNA) from several species of Ozark cavefishes and cave crayfishes and complete an initial surveillance of locations across the Ozark Highlands using environmental DNA (eDNA). Using DNA either provided by agency cooperators or that we extracted from tissue samples, we PCR amplified and then sequenced the Cytochrome Oxidase 1 (CO1) gene for cave crayfishes and the NADH Dehydrogenase Subunit 2 (ND2) gene for cavefishes. We developed species-specific primers and probes for five cave crayfishes and two cavefishes. From February 2017 to May 2017, we sampled 1–5 sampling units from 42 caves, wells, and springs (i.e., sites) using eDNA and traditional visual surveys. We measured physicochemical parameters at each sampling unit to estimate detection probability associated with both techniques. We also calculated two occupancy covariates for each site using geospatial data. We successfully amplified Troglichthys rosae DNA from the environment and detected DNA representing this species at 24 of 40 sites. At 16 of the sites where we detected T. rosae DNA, we did not visually observe the species. Although our assay for Typlichthys eigenmanni successfully amplified the target DNA from the environment, it also resulted in false absences where the species was visually confirmed. Using eDNA to detect cave crayfishes was much more difficult. The assay for Cambarus subterraneus did not work for eDNA samples and we were unable to pick up DNA from the environment, even at locations where it was visually confirmed. Alternatively, the eDNA surveys worked well for C. tartarus and we were able to amplify DNA at every site where it was visually observed. Our assay for C. aculabrum was based on a single sample obtained from GenBank, and did not amplify eDNA from field samples. Lastly, our eDNA results from samples in the known range of Orconectes stygocaneyi suggested the species may be found at an additional cave. Detection using eDNA based on our O. stygocaneyi assay was likely low because it was designed from a pseudogene; however, positive eDNA samples were sequenced to confirm species-specific DNA. Detection probability of both cavefishes and cave crayfishes varied by survey technique and was influenced by water volume, water clarity, water velocity, and substrate. Detection of cavefishes and cave crayfishes via visual surveys decreased when water volume increased, whereas detection using eDNA increased with greater water volume. Detection between taxa using either sample method was highest in habitats classified by fine substrates, except for eDNA detection of crayfishes which was greatest in coarse substrates. Detection of cavefishes increased with water clarity, but detection of cave crayfishes increased with turbidity. Detection probability of both cavefishes and crayfishes using eDNA increased slightly with water velocity, but decreased with visual surveys as water velocity increased. Occupancy by both taxa was positively related to particular geologic series. Crayfish occupancy was negatively related to fine-scale anthropogenic disturbance (i.e., 500-m buffer around the site), whereas crayfish showed no relationship with disturbance. Our results suggest possible range extensions, provide insights to factors driving detection using both sample techniques, and suggest areas where recharge zones may be shared among caves. Future efforts focused on a comprehensive evaluation of genetic diversity among cave crayfishes to improve assay design could improve detection and the applicability of eDNA as a supplemental and non-invasive sampling approach.

Cooperator Science Series↗

Geologic Characterization of Young Alluvial Basin-Fill Deposits from Drill Hole Data in Yucca Flat, Nye County, Nevada

Yucca Flat is a topographic and structural basin in the northeastern part of the Nevada Test Site (NTS) in Nye County, Nevada, that has been the site of numerous underground nuclear tests; many of these tests occurred within the young alluvial basin-fill deposits. The migration of radionuclides to the Paleozoic carbonate aquifer involves passage through this thick, heterogeneous section of Tertiary and Quaternary rock. An understanding of the lateral and vertical changes in the material properties of young alluvial basin-fill deposits will aid in the further development of the hydrogeologic framework and the delineation of hydrostratigraphic units and hydraulic properties required for simulating ground-water flow in the Yucca Flat area. This report by the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, presents data and interpretation regarding the three-dimensional variability of the shallow alluvial aquifers in areas of testing at Yucca Flat, data that are potentially useful in the understanding of the subsurface flow system. This report includes a summary and interpretation of alluvial basin-fill stratigraphy in the Yucca Flat area based on drill hole data from 285 selected drill holes. Spatial variations in lithology and grain size of the Neogene basin-fill sediments can be established when data from numerous drill holes are considered together. Lithologic variations are related to different depositional environments within the basin including alluvial fan, channel, basin axis, and playa deposits.

Open-File Report↗

Geologic Characterization of Young Alluvial Basin-Fill Deposits from Drill-Hole Data in Yucca Flat, Nye County, Nevada

Yucca Flat is a topographic and structural basin in the northeastern part of the Nevada Test Site in Nye County, Nevada, that has been the site of numerous underground nuclear tests; many of these tests occurred within the young alluvial basin-fill deposits. The migration of radionuclides to the Paleozoic carbonate aquifer involves passage through this thick, heterogeneous section of Tertiary and Quaternary rock. An understanding of the lateral and vertical changes in the material properties of young alluvial basin-fill deposits will aid in the further development of the hydrogeologic framework and the delineation of hydrostratigraphic units and hydraulic properties required for simulating ground-water flow in the Yucca Flat area. This report by the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, presents data and interpretation regarding the three-dimensional variability of the shallow alluvial aquifers in areas of testing at Yucca Flat, data that are potentially useful in the understanding of the subsurface flow system. This report includes a summary and interpretation of alluvial basin-fill stratigraphy in the Yucca Flat area based on drill-hole data from 285 selected drill holes. Spatial variations in lithology and grain size of the Neogene basin-fill sediments can be established when data from numerous drill holes are considered together. Lithologic variations are related to different depositional environments within the basin such as alluvial fan, channel, basin axis, and playa deposits.

Scientific Investigations Report↗

Approaches for assessing flows, concentrations, and loads of highway and urban runoff and receiving-stream stormwater in southern New England with the Stochastic Empirical Loading and Dilution Model (SELDM)

The Stochastic Empirical Loading and Dilution Model (SELDM) was designed to help quantify the risk of adverse effects of runoff on receiving waters, the potential need for mitigation measures, and the potential effectiveness of such management measures for reducing these risks. SELDM is calibrated using representative hydrological and water-quality input statistics. This report by the U.S. Geological Survey, in cooperation with the Federal Highway Administration and the Connecticut, Massachusetts, and Rhode Island Departments of Transportation, documents approaches for assessing flows, concentrations, and loads of highway- and urban-runoff and receiving-stream stormwater in southern New England with SELDM. In this report, the term “urban runoff” is used to identify stormwater flows from developed areas with impervious fractions ranging from 10 to 100 percent without regard to the U.S. Census Bureau designation for any given location. There are more than 48,000 delineated road-stream crossings in southern New England, but because there are relatively few precipitation, streamflow, and water-quality monitoring sites in this area, methods were needed to simulate conditions at unmonitored sites. This report documents simulation methods, methods for interpreting stochastic model results, sensitivity analyses to identify the most critical variables of concern, and examples demonstrating how simulation results can be used to inform scientific decision-making processes. Results of 7,511 SELDM simulations were used to do the sensitivity analyses and provide information decisionmakers can use to address runoff-quality issues in southern New England and other areas of the Nation. The sensitivity analyses indicate the relatively strong effect of input variables on variations in output results. These analyses indicate that highway and urban runoff quality and upstream water-quality statistics that vary considerably from site to site have the greatest effect on simulated results. Further data are needed to improve available water-quality statistics, and because the number of monitored sites will never approach the number of sites of interest for water-quality management, research is needed to identify methods to select statistics for unmonitored sites and quantify the uncertainties in the selection process. Hydrologically, prestorm streamflows with and without zero flows are the most sensitive and therefore the most important hydrologic variables to quantify. Results of analyses also are sensitive to statistics used for simulating structural best management practices. Although the focus of the report is on data, statistics, simulation methods, and methods to interpret stochastic simulations, the examples in this report provide results that can be used to inform scientific decision-making processes. The results of 441 simulations that provide regional and site-specific highway and urban runoff yields across southern New England can be used for total maximum daily load analyses. The example stormwater load analysis done for 16 tributaries of the Narragansett Bay demonstrates that highway nitrogen loads are a small fraction of stormwater loads (about 3.6 percent), and a much smaller fraction of all nitrogen loads to the bay, primarily because highways have a small footprint on the land. Examples evaluating the potential effectiveness of end-of-pipe treatment indicate that offsite treatment is warranted in developed areas, and land conservation may be an effective mitigation strategy. The results of these analyses are consistent with conclusions from other simulation and monitoring studies.

Connecticut, Massachusetts, New Hampshire, Rhode I↗

Developing a state water plan: Ground-water conditions in Utah, spring of 1964

This report is the first in a series of annual reports which will describe ground-water conditions in Utah. It was prepared cooperatively by the U.S. Geological Survey and the Utah Water and Power Board and was designed to provide the data for interested parties, such as legislators, administrators, and planners to keep abreast of changing ground-water conditions in the state. Because this report is the first of the series, it necessarily includes certain background and descriptive information which gives a broad general picture of ground-water conditions. Subsequent reports will discuss only changes that have taken place during the previous year. Many of the data used in the preparation of the report were collected by the Geological Survey in cooperation with the Utah State Engineer during past and continuing programs. The well-location map and some statistical information about numbers of wells in the State were prepared by digital computer from the Utah Resources Information System, University of Utah, utilizing records which were compiled largely from the files of the Utah State Engineer. R.E. Marsell, geological consultant to the Utah Water and Power Board, first suggested that this report be prepared.

Utah↗

Ground water in the East Shore area, Utah. Part I. Bountiful District, Davis County

The Bountiful district in Davis County, Utah, less than 10 miles from the heart of Salt Lake City, is rapidly becoming an integral part of the metropolitan area of Salt Lake City. It cannot achieve the development that its location merits unless the present water supplies are increased. The district is a fertile agricultural area favorably situated between the largest cities in the intermountain area and athwart the major routes of transportation and communication, but development of its residential, industrial, and agricultural potentialities will be restricted until existing water resources are supplemented by importation from other drainage basins that now have surplus water supplies. This conclusion is reached in the accompanying report by the Geological Survey, prepared in cooperation with the Utah State Engineer and the Davis County Water Users Association, and based on a 2-year investigation of the existing water supplies

Utah↗

Geophysical surveys, hydrogeologic characterization, and groundwater flow model for the Truxton basin and Hualapai Plateau, northwestern Arizona

This is the third and final report in a series that describe the groundwater resources of the Hualapai Indian Reservation. These reports document the findings of a comprehensive groundwater study conducted on the reservation and adjacent areas from 2015 through 2018 by the U.S. Geological Survey in cooperation with the Bureau of Reclamation. The first report described the hydrologic framework and characterization of the Truxton aquifer on the Hualapai Indian Reservation (Bills and Macy, 2016). The second report described the hydrogeologic characterization of the Hualapai Plateau part of the reservation (Mason, Macy, and others, 2020). This report includes five chapters. Chapter A (Mason, Knight, and others, 2020) is a summary of this multichapter volume and briefly describes the study area. Chapter B (Mason, Bills, and Macy, 2020) describes the geology and hydrology of the Truxton basin and Hualapai Plateau. Chapter C (Kennedy, 2020) describes the results of a gravity geophysical survey of the Truxton basin. Chapter D (Ball, 2020) describes the findings of an airborne electromagnetic survey of the Truxton aquifer and Hualapai Plateau. Chapter E (Knight, 2020) describes the results of a transient groundwater model created for the entire Truxton aquifer both on and off the reservation. The groundwater-flow model is used to estimate projected groundwater levels based on future groundwater withdrawal scenarios.

Arizona↗