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USGS2024

Forest fire, thinning, and flood in wildland-urban interface: UAV and lidar-based estimate of natural disaster impacts

Context Wildland-urban interface (WUI) areas are facing increased forest fire risks and extreme precipitation events due to climate change, which can lead to post-fire flood events. The city of Flagstaff in northern Arizona, USA experienced WUI forest thinning, fire, and record rainfall events, which collectively contributed to large floods and damages to the urban neighborhoods and city infrastructure. Objectives We demonstrate multi-temporal, high resolution image applications from an unoccupied aerial vehicle (UAV) and terrestrial lidar in estimating landscape disturbance impacts within the WUI. Changes in forest vegetation and bare ground cover in WUIs are particularly challenging to estimate with coarse-resolution satellite images due to fine-scale landscape processes and changes that often result in mixed pixels. Methods Using Sentinel-2 satellite images, we document forest fire impacts and burn severity. Using 2016 and 2021 UAV multispectral images and Structure-from-Motion data, we estimate post-thinning changes in forest canopy cover, patch sizes, canopy height distribution, and bare ground cover. Using repeat lidar data within a smaller area of the watershed, we quantify geomorphic effects in the WUI associated with the fire and subsequent flooding. Results We document that thinning significantly reduced forest canopy cover, patch size, tree density, and mean canopy height resulting in substantially reduced active crown fire risks in the future. However, the thinning equipment ignited a forest fire, which burned the WUI at varying severity at the top of the watershed that drains into the city. Moderate-high severity burns occurred within 3 km of downtown Flagstaff threatening the WUI neighborhoods and the city. The upstream burned area then experienced 100-year and 200–500-year rainfall events, which resulted in large runoff-driven floods and sedimentation in the city. Conclusion We demonstrate that UAV high resolution images and photogrammetry combined with terrestrial lidar data provide detailed and accurate estimates of forest thinning and post-fire flood impacts, which could not be estimated from coarser-resolution satellite images. Communities around the world may need to prepare their WUIs for catastrophic fires and increase capacity to manage sediment-laden stormwater since both fires and extreme weather events are projected to increase.

Arizona↗

USGS2019

The risk reduction benefits of the Mesoamerican Reef in Mexico

Coastal development and climate change are dramatically increasing the risks of flooding, erosion, and extreme weather events. Coral reefs and other coastal ecosystems act as natural defenses against coastal hazards, but their degradation increases risk to people and property. Environmental degradation, however, has rarely been quantified as a driver of coastal risk. In Quintana Roo, Mexico, a region on the Mexican Caribbean coast with an annual tourism economy of 10 billion USD, coral reefs constitute a natural barrier against flooding from hurricanes. This study spatially quantifies the risk reduction benefits of the Mesoamerican Reef in Quintana Roo for people, buildings, and hotel infrastructure. The risk reduction benefits are substantial. For example, the reefs prevented 43% additional damage during Hurricane Dean in (2007) and provide nowadays hazard risk reduction for 4.3% of the people, 1.9% of the built capital, and 2.4% of the hotel infrastructure, per year. The annual benefits are estimated in 4,600 people, 42 million USD damage prevention for buildings, and 20.8 million USD for hotel infrastructure. The study also compares the risk reduction of coral reefs with (i) the protection offered by dunes and (ii) the increase in coastal risk from sea-level rise (SLR). The risk reduction of dunes is more critical where there are no coral reefs offshore and for small return-periods storms. Sea-level rise, however, will make the more frequent storms more impactful and will drive significant increases in annual expected damages across the region. However, we demonstrate that, in coral reef environments, the contribution of reef degradation to coastal risk is larger than the expected increase in risk from SLR. However, the spatial distribution of the risk reduction benefits from reefs differs for people and infrastructure, and in particular for hotels, which receive the most protection from reefs. Furthermore, many sections present larger benefits than the typical costs of restoration. This valuation makes a compelling case for protecting and maintaining this natural infrastructure for its risk reduction service, but also allows the development of piloting innovative strategies, such as risk finance and insurance strategies, that can align environmental and risk management goals.

Mesoamerican Reef↗

USGS2022

Geologic, geomorphic, and edaphic underpinnings of dryland ecosystems: Colorado Plateau landscapes in a changing world

Drylands represent more than 41% of the global land surface and are at degradation risk due to land use and climate change. Developing strategies to mitigate degradation and restore drylands in the face of these threats requires an understanding of how drylands are shaped by not only soils and climate, but also geology and geomorphology. However, few studies have completed such a comprehensive analysis that relates spatial variation in plant communities to all aspects of the geologic–geomorphic–edaphic–plant–climate system. The focus of this study is the Colorado Plateau, a high-elevation dryland in the southwestern United States, which is particularly sensitive to future change due to climate vulnerability and increasing land-use pressure. Here, we examined 135 long-term vegetation-monitoring sites in three national parks and characterized connections between geology, geomorphology, soils, climate, and dryland plant communities. To first understand the geologic and geomorphic influences on soil formation and characteristics, we explore associations between soil pedons, bedrock geology, and geomorphology. Then, we characterize principal axes of variation in plant communities and ascertain controls and linkages between components of the edaphic–geomorphic system and plant community ordinations. Geologic and geomorphic substrate exerted controls on important properties of the soil profile, particularly depth, water-holding capacity, rockiness, salinity, and fine sands. Ordination identified five distinct plant communities and three primary axes of variation, representing gradients of woody- to herbaceous-dominated communities (Axis 1), saline scrublands to C 3 grasslands (Axis 2), and annual to perennial communities (Axis 3). Geology, geomorphology, and soil explained a large proportion of variation in Axis 1 (74%), while climate variables largely explained Axis 2 (68%), and Axis 3 was not well explained by the random forest models. The variables identified as most influential to each axis were, respectively: (1) soil depth; (2) aridity, lithology, and soil salinity; and (3) temperature and precipitation. We posit that Axis 3 represents a land degradation gradient due to historic grazing, likely exacerbated by dry conditions. Results provide a novel framework that links the geologic and geomorphic evolution of landscapes, with the distribution of soils and plant communities that can guide ecosystem management, exemplifying an approach applicable to drylands globally.

Arizona, Colorado, New Mexico, Utah↗

USGS2018

Assessment of potential risks from renewable energy development and other anthropogenic factors to wintering Golden Eagles in the western United States

Wind and other energy development are expanding rapidly and on an unprecedented scale within the range of the Golden Eagle ( Aquila chrysaetos ) while other anthropogenic-related changes, wildfires, invasive plants, drought, and climate change are altering or destroying native habitats occupied by Golden Eagles. However, the potential effects of these factors on North American Golden Eagle populations are largely unknown and the most recent evidence indicates that the population in the western United States is declining slightly. Impediments to evaluating the potential effects of energy development projects on wintering Golden Eagles include issues of scale and a paucity of available information about eagle winter use areas and ecology. We applied a predictive model of eagle winter distribution developed for Idaho and Montana, to Idaho, Utah, Nevada and eastern Oregon to help identify potential wintering areas and identify risks that occur in those areas. The model identifies ~40% of the four state study area as potentially suitable eagle winter habitat and provides a basis for spatial assessment of possible risk factors to eagles wintering there. We used eBird and Christmas Bird Count citizen science datasets for an independent evaluation of the accuracy of our predictive distribution model. The model was robust, accurately predicting the presence of wintering Golden Eagles significantly more often than expected. We used digital environmental datasets (layers) of potential risk factors, in conjunction with model predicted eagle distribution, to better understand and estimate the extent of risks to the wintering eagle population in the study area. These layers represent available data for some of the factors previously identified as risks in the landscape to wintering Golden Eagles. The majority of predicted eagle wintering areas occurred where there was little habitat fragmentation (<10%). All predicted winter areas contained at least one potential risk factor (e.g., potential for energy development); 39.4% of predicted winter areas contained at least two known risk factors. The greatest number of risks often occurred where the human footprint was highest and where eagles were less likely to occur during winter. Our results can be used to help prioritize field surveys for identifying important Golden Eagle winter areas in the western United States and determine potential locations where energy development is least likely to have negative effects on wintering eagles. Survey efforts can be allocated in consideration of management and conservation objectives based on predicted habitat suitability and risk factors. For example, surveys for areas of high suitability and low risk can identify places to focus management for conservation of eagle winter areas. Further, sites proposed for wind energy development could be reviewed initially based on model predicted eagle wintering areas and then surveyed to determine if permitting for development is appropriate.

Book chapter↗

USGS2025

Effects of climate change on midwestern ecosystems: Appalachian – Interior – Northeast Mesic Forest

The Appalachian-Interior-Northeast Mesic Forest ecosystem, historically buffered by cool, moist conditions, may experience significant stress under future climate change, particularly due to intensifying droughts and milder winters in the midwestern United States. Droughts are expected to intensify in frequency and severity, depleting soil moisture, increasing tree mortality, and reshaping species composition. Increasing aridity and disrupted hydrologic cycles will likely accelerate soil erosion, deplete nutrients, and heighten wildfire risk. Meanwhile, milder winters may reduce snowpack insulation, increase freeze-thaw cycles, and alter growing seasons, potentially amplifying cold stress, disrupting phenology, and contributing to shifts in habitat structure and community composition. While easing winter severity may temporarily boost plant productivity and facilitate species migration into and throughout the Midwest, it can also increase the risk of frost damage for early-leafing trees and disrupt ecological relationships, such as plant-pollinator interactions. Together, these stressors may drive fundamental shifts in habitat structure and community composition, favoring drought-, fire-, and cold-tolerant species, while historically dominant, moisture-dependent species decline. Species with limited drought resistance, such as those with shallow roots or low water-use efficiency, may be especially vulnerable, while drought-adapted taxa could gain a competitive advantage. This shift could trigger a departure from over a century of mesophication in the Appalachian-Interior-Northeast Mesic Forest, which has favored shade-loving, moisture-dependent species in fire-suppressed landscapes. As a result, these forests may be particularly ill-equipped to withstand the novel environmental conditions imposed by intensifying droughts and milder winters. The Appalachian-Northeast Mesic Forest habitat group, dominated by eastern hemlock ( Tsuga canadensis ) and eastern white pine ( Pinus strobus ), is likely particularly vulnerable, as both dominant species are projected to decline due to increasing drought stress and shifting competitive dynamics. In the North-Central Beech - Maple - Basswood Forest, the Driftless Area of Wisconsin, Minnesota, and Iowa may be more vulnerable than more eastern portions of the habitat due to its already drier conditions, with climate change expected to push these communities beyond favorable conditions. Species interactions, including invasive species, pests, and herbivory, are also likely to be reshaped by climate change, compounding stress on habitat groups throughout the Appalachian-Interior-Northeast Mesic Forest. Warmer winters and increased disturbance may facilitate the expansion of invasive species, which outcompete native vegetation and alter ecosystem dynamics. At the same time, pests and pathogens are likely to become more destructive, as milder winters enhance their survival and spread and drought weakens tree defenses. Additionally, rising white-tailed deer ( Odocoileus virginianus ) populations, supported by warmer winters, may shift forest regeneration patterns by selectively browsing on sensitive seedlings and saplings, limiting the recruitment of historically dominant tree species while favoring browse-resistant plants. Collectively, these pressures can drive significant and ongoing ecological transformation in the Appalachian-Interior-Northeast Mesic Forest, highlighting the need for adaptive management strategies to sustain biodiversity and ecosystem function.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗

USGS2023

Cisco population characteristics in Wisconsin lakes in relation to lake- and landscape-level factors

Objective Declines in Cisco Coregonus artedi populations in some inland lakes have prompted assessments of Cisco occurrence and extirpation risk in relation to various stressors to identify refuge lakes and factors that promote Cisco persistence. However, most previous assessments have focused on presence–absence of Cisco rather than examining how population characteristics, such as relative abundance or growth, might change in relation to lake- and landscape-level environmental factors. Consequently, our specific objectives were to identify important environmental factors explaining variation in Cisco relative abundance and growth and to determine whether population metrics describing size and age distributions were related to relative abundance in Wisconsin inland lakes. Methods Cisco were collected from 48 inland Wisconsin lakes during 2011–2015 using vertical monofilament gill nets and population-specific relative abundance estimates (catch per unit effort [CPUE]) were quantified as the number of individuals per gill-net night. Sagittal otoliths were removed from a subsample of Cisco for age estimation and growth was indexed as mean total length (TL; mm) at age 2. Length and age data were used to develop a suite of metrics describing size and age distributions of each population. Random forest models were used to evaluate relationships between 10 biologically relevant predictor variables representing variation in physical, climatic, catchment, and limnological characteristics and Cisco CPUE and growth. Pearson correlations were used to determine whether population characteristics were related to CPUE. Result Cisco populations exhibited large variation in relative abundance, growth, and size and age distributions. Best-fit random forest models explained approximately 25% of the variation in Cisco CPUE and 46% of the variation in growth. Growing degree-days and variables associated with availability, quality, and quantity of suitable oxythermal conditions were identified as important predictors of both Cisco CPUE and growth; CPUE was also identified as an important predictor of growth. Mean TL and mean TL at age 2 were negatively related to Cisco CPUE, whereas mean age, number of age-classes present, and maximum observed age were positively related to CPUE. Conclusion Our results suggest that maintenance of suitable oxythermal habitat conditions may be critical to conserving abundant Cisco populations. Our assessment also provides insights on how Cisco populations may respond to environmental and anthropogenic stressors, which could aid ongoing and future conservation and management efforts in Wisconsin and elsewhere.

Wisconsin↗

USGS2009

Regression equations for estimation of annual peak-streamflow frequency for undeveloped watersheds in Texas using an L-moment-based, PRESS-minimized, residual-adjusted approach

Annual peak-streamflow frequency estimates are needed for flood-plain management; for objective assessment of flood risk; for cost-effective design of dams, levees, and other flood-control structures; and for design of roads, bridges, and culverts. Annual peak-streamflow frequency represents the peak streamflow for nine recurrence intervals of 2, 5, 10, 25, 50, 100, 200, 250, and 500 years. Common methods for estimation of peak-streamflow frequency for ungaged or unmonitored watersheds are regression equations for each recurrence interval developed for one or more regions; such regional equations are the subject of this report. The method is based on analysis of annual peak-streamflow data from U.S. Geological Survey streamflow-gaging stations (stations). Beginning in 2007, the U.S. Geological Survey, in cooperation with the Texas Department of Transportation and in partnership with Texas Tech University, began a 3-year investigation concerning the development of regional equations to estimate annual peak-streamflow frequency for undeveloped watersheds in Texas. The investigation focuses primarily on 638 stations with 8 or more years of data from undeveloped watersheds and other criteria. The general approach is explicitly limited to the use of L-moment statistics, which are used in conjunction with a technique of multi-linear regression referred to as PRESS minimization. The approach used to develop the regional equations, which was refined during the investigation, is referred to as the 'L-moment-based, PRESS-minimized, residual-adjusted approach'. For the approach, seven unique distributions are fit to the sample L-moments of the data for each of 638 stations and trimmed means of the seven results of the distributions for each recurrence interval are used to define the station specific, peak-streamflow frequency. As a first iteration of regression, nine weighted-least-squares, PRESS-minimized, multi-linear regression equations are computed using the watershed characteristics of drainage area, dimensionless main-channel slope, and mean annual precipitation. The residuals of the nine equations are spatially mapped, and residuals for the 10-year recurrence interval are selected for generalization to 1-degree latitude and longitude quadrangles. The generalized residual is referred to as the OmegaEM parameter and represents a generalized terrain and climate index that expresses peak-streamflow potential not otherwise represented in the three watershed characteristics. The OmegaEM parameter was assigned to each station, and using OmegaEM, nine additional regression equations are computed. Because of favorable diagnostics, the OmegaEM equations are expected to be generally reliable estimators of peak-streamflow frequency for undeveloped and ungaged stream locations in Texas. The mean residual standard error, adjusted R-squared, and percentage reduction of PRESS by use of OmegaEM are 0.30log 10 , 0.86, and -21 percent, respectively. Inclusion of the OmegaEM parameter provides a substantial reduction in the PRESS statistic of the regression equations and removes considerable spatial dependency in regression residuals. Although the OmegaEM parameter requires interpretation on the part of analysts and the potential exists that different analysts could estimate different values for a given watershed, the authors suggest that typical uncertainty in the OmegaEM estimate might be about +or-0.10 10 . Finally, given the two ensembles of equations reported herein and those in previous reports, hydrologic design engineers and other analysts have several different methods, which represent different analytical tracks, to make comparisons of peak-streamflow frequency estimates for ungaged watersheds in the study area.

Texas↗

USGS2022

Perceptions of conservation introduction to inform decision support among U.S. Fish and Wildlife Service employees

Executive Summary Around the globe, fish and wildlife managers are facing increasingly complex management issues because of multiscale ecological effects like climate change, species invasion, and land-use change. Managers seeking to prevent extinctions or preserve ecosystems are increasingly considering more interventionist techniques to overcome the resulting changes. Among those techniques, translocation methods that intentionally move species into new, less impacted habitats are being considered. These types of translocations are known by a range of terms, including “managed relocation” and “assisted migration,” but the International Union for the Conservation of Nature’s Species Survival Commission (IUCN SSC, 2013) has proposed “conservation introduction” (CI) as a standard term. As defined by the IUCN SSC, CI is the intentional movement of a species or population outside its indigenous range for conservation purposes. CI can be divided into two forms: assisted colonization and ecological replacement. Assisted colonization is moving species outside its indigenous range to prevent extinction or extirpation of a population. Ecological replacement is moving species to fulfill an important niche that is necessary within an ecosystem. Proponents suggest these methods are necessary to address the ecological challenges managers are trying to overcome. Opponents point out the potential for species to become invasive, introduce disease or parasites, and cause other cascading impacts throughout the ecosystem. The result is controversy and disagreement. As such, it will be imperative to develop clear guidelines and best practices to be followed within wildlife management agencies to prevent potential To this end, the U.S. Fish and Wildlife Service (USFWS) partnered with the U.S. Geological Survey (USGS) to develop the current project. The intent was to describe the perceptions of USFWS personnel across many aspects of CI so that the USFWS could use this information in the planning and development of their own internal decision-support framework for CI. This report is presented in five sections. Section 1 introduces the project and provides an in-depth overview of background literature related to CI. Section 2 describes the study design, methods, and study participant characteristics. Section 3 describes key results and recommendations related to the development of a USFWS decision framework. Section 4 investigates a range of perceptions held by participants and establishes baseline information for how USFWS personnel may view CI and its application. Types of viewpoints surveyed include preferred terms and definitions, perceived barriers, perceived risks and tradeoffs, and aspects of success. Perceived barriers refers to factors that may prevent successful implementation of CI and perceived risks refers to potential negative outcomes that may occur as a result of implementing CI. Section 5 provides an overview of our conclusions for this project. Overall, we found that CI is likely to be viewed positively within the USFWS, but employees offered cautions and caveats. Most participants we interviewed feel that it is a necessary tool that will be indispensable in certain situations but also feel that there is more risk associated than with more traditional methods. For this reason, many participants are concerned about the assessment and planning that should be conducted prior to any CI effort. Our results indicate that many USFWS personnel will be open to CI being adopted more regularly but will be looking for clear guidance on how it should be implemented.

Scientific Investigations Report↗

USGS2018

Alaska

Alaska is the largest state in the Nation, almost one-fifth the size of the combined lower 48 United States, and is rich in natural capital resources. Alaska is often identified as being on the front lines of climate change since it is warming faster than any other state and faces a myriad of issues associated with a changing climate. The cost of infrastructure damage from a warming climate is projected to be very large, potentially ranging from $110 to $270 million per year, assuming timely repair and maintenance. Although climate change does and will continue to dramatically transform the climate and environment of the Arctic, proactive adaptation in Alaska has the potential to reduce costs associated with these impacts. This includes the dissemination of several tools, such as guidebooks to support adaptation planning, some of which focus on Indigenous communities. While many opportunities exist with a changing climate, economic prospects are not well captured in the literature at this time. As the climate continues to warm, there is likely to be a nearly sea ice-free Arctic during the summer by mid-century. Ocean acidification is an emerging global problem that will intensify with continued carbon dioxide (CO 2 ) emissions and negatively affects organisms. Climate change will likely affect management actions and economic drivers, including fisheries, in complex ways. The use of multiple alternative models to appropriately characterize uncertainty in future fisheries biomass trajectories and harvests could help manage these challenges. As temperature and precipitation increase across the Alaska landscape, physical and biological changes are also occurring throughout Alaska’s terrestrial ecosystems. Degradation of permafrost is expected to continue, with associated impacts to infrastructure, river and stream discharge, water quality, and fish and wildlife habitat. Longer sea ice-free seasons, higher ground temperatures, and relative sea level rise are expected to exacerbate flooding and accelerate erosion in many regions, leading to the loss of terrestrial habitat in the future and in some cases requiring entire communities or portions of communities to relocate to safer terrain. The influence of climate change on human health in Alaska can be traced to three sources: direct exposures, indirect effects, and social or psychological disruption. Each of these will have different manifestations for Alaskans when compared to residents elsewhere in the United States. Climate change exerts indirect effects on human health in Alaska through changes to water, air, and soil and through ecosystem changes affecting disease ecology and food security, especially in rural communities. Alaska’s rural communities are predominantly inhabited by Indigenous peoples who may be disproportionately vulnerable to socioeconomic and environmental change; however, they also have rich cultural traditions of resilience and adaptation. The impacts of climate change will likely affect all aspects of Alaska Native societies, from nutrition, infrastructure, economics, and health consequences to language, education, and the communities themselves. The profound and diverse climate-driven changes in Alaska’s physical environment and ecosystems generate economic impacts through their effects on environmental services. These services include positive benefits directly from ecosystems (for example, food, water, and other resources), as well as services provided directly from the physical environment (for example, temperature moderation, stable ground for supporting infrastructure, and smooth surface for overland transportation). Some of these effects are relatively assured and in some cases are already occurring. Other impacts are highly uncertain, due to their dependence on the structure of global and regional economies and future human alterations to the environment decades into the future, but they could be large. In Alaska, a range of adaptations to changing climate and related environmental conditions are underway and others have been proposed as potential actions, including measures to reduce vulnerability and risk, as well as more systemic institutional transformation.

Report↗

USGS2015

Global trends in emerging viral diseases of wildlife origin

Fifty years ago, infectious diseases were rarely considered threats to wildlife populations, and the study of wildlife diseases was largely a neglected endeavor. Furthermore, public health leaders at that time had declared that “it is time to close the book on infectious diseases and the war against pestilence won,” a quote attributed to Dr. William H. Stewart in 1967. There is some debate whether he actually said these words; however, they reflect the widespread belief at that time (Spellberg, 2008). Leap forward to today, and the book on infectious diseases has been dusted off. There is general consensus that the global environment favors the emergence of infectious diseases, and in particular, diseases of wildlife origin (Taylor et al., 2001). Examples of drivers of these infectious diseases include climate and landscape changes, human demographic and behavior changes, global travel and trade, microbial adaptation, and lack of appropriate infrastructure for wildlife disease control and prevention (Daszak et al., 2001). The consequences of these emerging diseases are global and profound with increased burden on the public health system, negative impacts on the global economy and food security, declines and extinctions of wildlife species, and subsequent loss of ecosystem integrity. For example, 35 million people are currently living with HIV infection globally (http://www.who.int/gho/hiv/en); 400 million poultry have been culled since 2003 as a result of efforts to control highly pathogenic H5N1 avian influenza (http://www.fao.org/avianflu/en/index.html), and there are increasing biological and ecological consequences. Examples of health threats to biodiversity include the “spillover” of human diseases to great ape populations (Köndgen et al., 2008), the near-extirpation of the black-footed ferret from canine distemper and sylvatic plague (for a review see Abbott et al., 2012), and threats to Hawaiian forest birds from introduced pathogens such as avian malaria and avian pox (van Riper et al., 1986, 2002). There are also newly discovered pathogens or diseases that have resulted in population declines, and global extinctions of several species. Examples include Batrachochytrium dendrobatidis, which causes a cutaneous fungal infection of amphibians and is linked to declines of amphibians globally (Kriger and Hero, 2009); and recently discovered Pseudogymnoascus (Geomyces) destructans, the etiologic agent of white-nose syndrome (WNS), which has caused precipitous declines of North American bat species (Blehert et al., 2009). Furthermore, there is increasing evidence of the subsequent impacts on human and ecosystem health; for example, increasing risk of exposure to Lyme disease as a consequence of decreased biodiversity (LoGiudice et al., 2003) as well as the economic cost of the loss of bats due to decreased insect control services (Boyles et al., 2011). Figure A12-1 is a timeline of important diseases investigated by the U.S. Geological Survey since the 1970s, which illustrates three factors: 1. The unprecedented emergence of new pathogens and geographic spread of known pathogens since the 1990s; 2. Diseases are increasingly causing large-scale, negative impacts on wildlife populations and spreading over larger geographic areas rather than remaining localized; and 3. Diseases are increasingly of concern for multiple sectors, including public health, agriculture and wildlife management agencies. Of increasing concern are these novel diseases such as WNS as they are hard to anticipate, particularly devastating to human health or wildlife populations, challenging to manage, spread over large geographic areas in short time periods, and may result in ecological ripple effects that are difficult to predict. The following article provides examples of recently emerged viral diseases of wildlife origin. The examples have been selected to illustrate the drivers of emerging viral diseases, both novel pathogens and previously known diseases, the impacts of these diseases, as well as the role of wildlife both as “villains” or reservoirs as well as “victims” of these viral diseases. The article also discusses potential management strategies for emerging viral diseases in wildlife populations and future science directions in wildlife health to prevent, prepare, respond to, and recover from these disease events. Finally, the concept of One Health and its potential role in developing solutions to these issues of mutual concern is discussed.

Conference Paper↗

USGS2025

Effects of climate change on Midwestern ecosystems: Central and Eastern North American Grassland and Shrubland

The Central and Eastern North American Grassland and Shrubland ecosystem may be increasingly shaped by intensifying drought and shifting seasonality. Rising temperatures and more variable precipitation, marked by longer dry spells, are projected to increase evapotranspiration and soil moisture deficits, and yield more frequent drought. At the same time, warming temperatures are projected to advance spring onset and extend the growing season. Drought may alter habitat structure by accelerating soil erosion, disrupting nutrient cycling, increasing physiological stress on plants, and reducing productivity. These changes are expected to shift community composition toward species adapted to water limitation and fluctuating resources, reducing much of the herbaceous cover that characterizes this ecosystem. Seasonal shifts may restructure habitat by altering phenology and f lowering dynamics, potentially increasing productivity but also heightening the risk of late-season frost damage. Community composition is expected to shift toward early-emerging species, particularly coolseason (C3) grasses, and species with phenological flexibility. Altered phenology may also lead to mismatches between plants and pollinators and increase pollinator competition at the beginning and end of the growing season, with potential consequences for reproduction. Although these overarching stressors affect the entire ecosystem, their specific impacts likely vary with local habitat conditions. In the Central and Northern Tallgrass Prairie, which are historically firemaintained habitats dominated by a mix of warm-season (C4) and cool-season (C3) grasses and forbs, climate change may shift community composition by favoring deep-rooted forbs and established shrubs while displacing shallow-rooted species, including many native grasses. These changes, especially in the absence of fire, may promote woody encroachment and drive long-term community reassembly. In the Central Interior Acidic Open Glade and Barrens, characterized by shallow, drought-prone soils, climate change may reinforce xeric assemblages and reduce the abundance of mesic species. In the absence of f ire, shrubs rather than larger woody species, are more likely to increase, as water limitations constrain the establishment of trees. In the Eastern North American Ruderal Meadow and Shrubland, which lack native species richness and structural stability, disturbance-tolerant invaders may increasingly dominate. Drought and earlier springs are expected to reinforce early successional dynamics and further constrain the restoration potential of these already degraded habitats. Across the region, invasive species, herbivory, and microbial and fungal communities are also expected to respond to climate change. Invasive plants with ruderal traits and flexible phenologies are likely to benefit from drought-driven disturbance, post-drought resource pulses, and longer, earlier growing seasons. These species often germinate and flower earlier than natives, gaining priority access to resources as seasonal timing shifts. Herbivory by increasing white-tailed deer (Odocoileus virginianus) populations is expected to intensify, particularly during drought, when plant defenses are weakened, and during extended growing seasons, which prolong forage availability. This selective browsing may contribute to declines in native forbs while indirectly promoting non-native grasses. Microbial and fungal communities, like plant communities, are likely vulnerable to both drought and shifting seasonality. Reduced soil moisture may suppress microbial activity and decomposition, while shifts in fungal community composition, particularly declines in arbuscular mycorrhizal fungi, may impair plant drought tolerance. Adaptation strategies for the Central and Eastern North American Grassland and Shrubland may require managers to anticipate and respond to these changes through both resistance-based approaches, such as restoring fire regimes and reinforcing native species dominance, and acceptance of some potential transitions, such as facilitating drought-tolerant and phenologically flexible species establishment and adjusting fire regimes to align with altered phenology.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗

USGS2000

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis drain extension

During the next few years, federal and state agencies may be required to evaluate proposals and discharge permits that could significantly change selenium (Se) inputs to the San Francisco Bay-Delta Estuary (Bay-Delta), particularly in the North Bay (i.e., Suisun Bay and San Pablo Bay). These decisions may include discharge requirements for an extension of the San Luis Drain (SLD) to the estuary to convey subsurface agricultural drainage from the western San Joaquin Valley (SJV), a renewal of an agreement to allow the existing portion of the SLD to convey subsurface agricultural drainage to a tributary of the San Joaquin River (SJR) (coincident with changes in flow patterns of the lower SJR), and refinements to promulgated Se criteria for the protection of aquatic life for the estuary. Understanding the biotransfer of Se is essential to evaluating the fate and impact of proposed changes in Se discharges to the Bay-Delta. However, past monitoring programs have not addressed the specific protocols necessary for an element that bioaccumulates. Confusion about Se threats in the past have stemmed from failure to consider the full complexity of the processes that result in Se toxicity. Past studies show that predators are more at risk from Se contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. In this report, we employ a novel procedure to model the fate of Se under different, potentially realistic load scenarios from the SJV. For each potential load, we progressively forecast the resulting environmental concentrations, speciation, transformation to particulate form, bioaccumulation by invertebrates, trophic transfer to predators, and effects in those predators. Enough is known to establish a first order understanding of effects should Se be discharged directly into the North Bay via a conveyance such as the SLD. Our approach uses 1) existing knowledge concerning the biogeochemical reactions of Se (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency) and 2) site-specific data mainly from 1986 to 1996 on clams and bottom-feeding fish and birds. Forecasts of Se loading from oil refineries and agricultural drainage from the SJV enable the calculation of a composite freshwater endmember Se concentration at the head of the estuary and at Carquinez Strait as a foundation for modeling. Our analysis of effects also takes into account the mode of conveyance for agricultural drainage (i.e., the SLD or SJR). The effects of variable flows on a seasonal or monthly basis from the Sacramento River and SJR are also considered. The results of our forecasts for external SJV watershed sources of Se mirror predictions made since 1955 of a worsening salt (and by inference, Se) buildup exacerbated by the arid climate and irrigation for agricultural use. We show that the reservoir of Se in the SJV is sufficient to provide loading at an annual rate of approximately 42,500 pounds (lbs) of Se to a Bay-Delta disposal point for 63 to 304 years at the lower range of our projections, even if influx of Se from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the SJV may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and Se buildup in the SJV, at least within a century. Our forecasts show the different proportions of Se loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 11 to 15 lbs Se per day; with treatment and cleanup, loads decreased to 3 lbs Se per day in 1999. In contrast, SJV agricultural drainage loads could range from of 45 to 117 lbs Se per day across a set of reasonable conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) based on water and drainage management. Loads vary per subarea mainly because of proximity of the s

California↗

USGS2013

Mobile Bay

Mobile Bay is the largest bay found in Alabama’s coastal area (Handley et al., 2007). It was named an Estuary of National Significance in 1995 under the U.S. Environmental Protection Agency’s (EPA) National Estuary Program (NEP), and its Comprehensive Conservation Management Plan was completed in 2002. Mobile Bay is 1,070 km 2 (413 miles 2 ) in area and 51 km (32 miles) long, making it the sixth largest estuary in the continental United States (Mobile Bay NEP, 2008). Its ecosystem provides habitat for more than 300 species of birds, 310 species of fish, 68 species of reptiles, 57 species of mammals, 40 species of amphibians, and 15 species of shrimp (Mobile Bay NEP, 1997). Mobile Bay lies between the Mississippi and Atlantic Flyways (Mobile Bay NEP, 2003). Commercial and residential development and industrial use is heavy in the Mobile Bay area. Although local growth and industrial markets support the Mobile Bay area economy, the resulting environmental damage to the very ecosystem upon which they depend remains a threat to the environment, economy, and population. The Mobile Bay ecosystem boasts high biological diversity and productivity and supports many freshwater and saltwater species of recreational and commercial importance. The great diversity of Mobile Bay reflects the diversity of Alabama, which is home to the largest number of different plant and animal species of all states east of the Mississippi River (Stein, 2002), and is bolstered by the unique climate and geographic conditions surrounding the bay. Freshwater inflow from the Mobile-Tensaw River Delta, ranging from 60,000 to 3,700,000 gallons per second (Wallace, 1996), mixes with saltwater from the Gulf of Mexico, which enters Mobile Bay via wind and tides (Burgan and Engle, 2006). Because of the unique conditions surrounding Mobile Bay, including shallow waters, a dynamic climate, and artificial hydrologic modifications—such as the construction of the Mobile Bay Causeway in the 1920s, which serves as an unintentional barrier between Delta waters north of the Causeway and saline waters south of the Causeway, the salinity of Mobile Bay is highly variable. Mobile Bay receives an average of 165 cm (65 inches) of rain per year from tropical storms, summer thunderstorms, and winter cold fronts (Stout et al., 1998). The climate and geography that have made Mobile Bay so rich in resources have also contributed to the threats surrounding its ecosystem. The extensive amount of rain in Mobile Bay creates large amounts of runoff, polluting the waters with fertilizers, chemicals, sediment, oil, trash, and sewage (Mobile Bay NEP, 1997). Tourism, ecotourism, recreational and commercial fishing, recreational boating, shipping, and chemical, pulp, and paper production are significant industries in Mobile Bay and the surrounding areas. Despite the approximate \$3 billion and 55,000 jobs these industries bring into the community (Alabama Tourism Department, 2010), the growth, development, and environmental stress they create are major threats to the Mobile Bay ecosystem. Among the nation’s states, Alabama ranks fifth in number of different species (144 endemic species), second in number of extinctions that have already occurred (90 extinct species) and fourth in number of species at risk for extinction (14.8% at risk out of 4,533 total species; Stein, 2002). Twenty-one of these threatened and endangered species are found in Mobile Bay, whose brackish waters provide a nursery area for many species of vertebrates and invertebrates. Some of these species include the Alabama sturgeon, Gulf sturgeon, heavy pigtoe mussel, inflated heel-splitter mussel, West Indian manatee, Alabama beach mouse, Perdido beach mouse, Alabama red-bellied turtle, gopher tortoise, Kemp’s ridley sea turtle, green sea turtle, loggerhead sea turtle, eastern indigo snake, flatwoods salamander, piping plover, red-cockaded woodpecker, and wood stork. Habitat loss underlies the decline of some bird species in Mobile Bay, and large mammals such as the red wolf, Florida panther, and Florida black bear are no longer found in the area. However, some rare species, such as the swallow-tailed kite, sandhill crane, and gopher tortoise can still be found (Duke and Kruczynski, 1992). The value of wetlands in Mobile Bay and the rest of the Gulf of Mexico is still being investigated. Although various monetary valuations of wetlands exist, critics remark that undervaluation of wetlands is inevitable (Mobile Bay NEP, 2008) and that estimates often do not place appropriate value on ecological services (Mitsch and Gosselink, 2000). Additionally, many estimates account only for anthropogenic values. One estimate concludes that one acre of wetlands performs \$3,000 worth of water purification each year (Mobile Bay NEP, 1997). With more than 76,890 hectares (190,000 acres) of wetlands in the Mobile Bay area, that equates to a value exceeding one-half billion dollars every year. Tourism, fishing, boating, production, and shipping are significant industries in the Mobile Bay area. More than 90% of fish landed in recreational and commercial fishing in the bay depend on bay habitat, including wetlands, for life requirements (Mobile Bay NEP, 1997). The Port of Mobile is Alabama’s only ocean-ship port (Mobile Bay NEP, 2008). Baldwin County, on the eastern side of the bay, experienced a population increase of 75% from 1990 to 2007, with an 89% increase in housing units (Mobile Bay NEP, 2008). Development and industry support the Mobile Bay economy, but they depend on the continued health, sustainability, and production of the water and living resources of the Mobile Bay ecosystem. Wetland loss, along with other forms of environmental degradation, remains a threat to the Mobile Bay ecosystem and Mobile Bay’s socioeconomic foundation.

Alabama↗

USGS2012

Simulation of groundwater conditions and streamflow depletion to evaluate water availability in a Freeport, Maine, watershed

In order to evaluate water availability in the State of Maine, the U.S. Geological Survey (USGS) and the Maine Geological Survey began a cooperative investigation to provide the first rigorous evaluation of watersheds deemed "at risk" because of the combination of instream flow requirements and proportionally large water withdrawals. The study area for this investigation includes the Harvey and Merrill Brook watersheds and the Freeport aquifer in the towns of Freeport, Pownal, and Yarmouth, Maine. A numerical groundwater- flow model was used to evaluate groundwater withdrawals, groundwater-surface-water interactions, and the effect of water-management practices on streamflow. The water budget illustrates the effect that groundwater withdrawals have on streamflow and the movement of water within the system. Streamflow measurements were made following standard USGS techniques, from May through September 2009 at one site in the Merrill Brook watershed and four sites in the Harvey Brook watershed. A record-extension technique was applied to estimate long-term monthly streamflows at each of the five sites. The conceptual model of the groundwater system consists of a deep, confined aquifer (the Freeport aquifer) in a buried valley that trends through the middle of the study area, covered by a discontinuous confining unit, and topped by a thin upper saturated zone that is a mixture of sandy units, till, and weathered clay. Harvey and Merrill Brooks flow southward through the study area, and receive groundwater discharge from the upper saturated zone and from the deep aquifer through previously unknown discontinuities in the confining unit. The Freeport aquifer gets most of its recharge from local seepage around the edges of the confining unit, the remainder is received as inflow from the north within the buried valley. Groundwater withdrawals from the Freeport aquifer in the study area were obtained from the local water utility and estimated for other categories. Overall, the public-supply withdrawals (105.5 million gallons per year (Mgal/yr)) were much greater than those for any other category, being almost 7 times greater than all domestic well withdrawals (15.3 Mgal/yr). Industrial withdrawals in the study area (2.0 Mgal/yr) are mostly by a company that withdraws from an aquifer at the edge of the Merrill Brook watershed. Commercial withdrawals are very small (1.0 Mgal/yr), and no irrigation or other agricultural withdrawals were identified in this study area. A three-dimensional, steady-state groundwater-flow model was developed to evaluate stream-aquifer interactions and streamflow depletion from pumping, to help refine the conceptual model, and to predict changes in streamflow resulting from changes in pumping and recharge. Groundwater levels and flow in the Freeport aquifer study area were simulated with the three-dimensional, finite-difference groundwater-flow modeling code, MODFLOW-2005. Study area hydrology was simulated with a 3-layer model, under steady-state conditions. The groundwater model was used to evaluate changes that could occur in the water budgets of three parts of the local hydrologic system (the Harvey Brook watershed, the Merrill Brook watershed, and the buried aquifer from which pumping occurs) under several different climatic and pumping scenarios. The scenarios were (1) no pumping well withdrawals; (2) current (2009) pumping, but simulated drought conditions (20-percent reduction in recharge); (3) current (2009) recharge, but a 50-percent increase in pumping well withdrawals for public supply; and (4) drought conditions and increased pumping combined. In simulated drought situations, the overall recharge to the buried valley is about 15 percent less and the total amount of streamflow in the model area is reduced by about 19 percent. Without pumping, infiltration to the buried valley aquifer around the confining unit decreased by a small amount (0.05 million gallons per day (Mgal/d)), and discharge to the streams increased by about 8 percent (0.3 Mgal/d). A 50-percent increase in pumping resulted in a simulated decrease in streamflow discharge of about 4 percent (0.14 Mgal/d). Streamflow depletion in Harvey Brook was evaluated by use of the numerical groundwater-flow model and an analytical model. The analytical model estimated negligible depletion from Harvey Brook under current (2009) pumping conditions, whereas the numerical model estimated that flow to Harvey Brook decreased 0.38 cubic feet per second (ft 3 /s) because of the pumping well withdrawals. A sensitivity analysis of the analytical model method showed that conducting a cursory evaluation using an analytical model of streamflow depletion using available information may result in a very wide range in results, depending on how well the hydraulic conductivity variables and aquifer geometry of the system are known, and how well the aquifer fits the assumptions of the model. Using the analytical model to evaluate the streamflow depletion with an incomplete understanding of the hydrologic system gave results that seem unlikely to reflect actual streamflow depletion in the Freeport aquifer study area. In contrast, the groundwater-flow model was a more robust method of evaluating the amount of streamflow depletion that results from withdrawals in the Freeport aquifer, and could be used to evaluate streamflow depletion in both streams. Simulations of streamflow without pumping for each measurement site were compared to the calibratedmodel streamflow (with pumping), the difference in the total being streamflow depletion. Simulations without pumping resulted in a simulated increase in the steady-state flow rate of 0.38 ft 3 /s in Harvey Brook and 0.01 ft 3 /s in Merrill Brook. This translates into a streamflow-depletion amount equal to about 8.5 percent of the steady-state base flow in Harvey Brook, and an unmeasurable amount of depletion in Merrill Brook. If pumping was increased by 50 percent and recharge reduced by 20 percent, the amount of streamflow depletion in Harvey Brook could reach 1.41 ft 3 /s.

Maine↗

USGS2010

The potential influence of changing climate on the persistence of salmonids of the inland west

The Earth's climate warmed steadily during the 20th century, and mean annual air temperatures are estimated to have increased by 0.6°C (Intergovernmental Panel on Climate Change, 2007). Although many cycles of warming and cooling have occurred in the past, the most recent warming period is unique in its rate and magnitude of change (Siegenthaler and others, 2005) and in its association with anthropogenic emissions of greenhouse gases (Intergovernmental Panel on Climate Change , 2007). The climate in the western United States warmed in concert with the global trend but at an accelerated rate (+0.8°C during the 20th century; Saunders and others, 2008). The region could also prove especially sensitive to future changes because the relatively small human population is growing rapidly, as are demands on limited water supplies. Regional hydrological patterns are dominated by seasonal snow accumulation at upper elevations. Most of the region is relatively dry, and both terrestrial and aquatic ecosystems are strongly constrained b y water availability (Barnett and others, 2008; Brown and others, 2008). Stream environments are dynamic and climatically extreme, and salmonid fishes are the dominant elements of the native biodiversity (McPhail and Lindsey, 1986; Waples and others, 2008). Salmonids have broad economic and ecologic importance, but a century of intensive water resource development, nonnative fish stocking, and land use has significantly reduced many populations and several taxa are now protected under the Endangered Species Act (Thurow and others, 1997; Trotter, 2008). Because salmonids require relatively pristine, cold water environments and are often isolated in headwater habitats, members of this group may be especially vulnerable to the effects of a warming climate (Keleher and Rahel, 1996; Rieman and others, 2007; Williams and others, 2009). Warming during the 20th century drove a series of environmental trends that have profound implications for many aspects of salmonid habitat, including disturbance regimes such as wildfire, and unfavorable changes to thermal and hydrologic properties of aquatic systems. Warmer air temperatures have been associated with decreased winter snow accumulations, have accelerated snowmelt, and have advanced the timing of peak runoff by several days to weeks across most of western North America (Stewart and others, 2005; Barnett and others, 2008). Less snow and earlier runoff decrease aquifer recharge, make less water available for groundwater inputs to streams, and are contributing to widespread decreases in summer low flows (Stewart and others, 2005; Rood and others, 2008; Luce and Holden 2009). Interannual variability in stream flow is increasing, as is the persistence of multi-year extreme conditions (McCabe and others, 2004; Pagano and Garen 2005). In many areas of western North America, flood risks have increased in association with warmer temperatures during the 20th century (Hamlet and Lettenmaier, 2005). Streams where midwinter temperatures are near freezing have proven especially sensitive to increased flooding because of associated transitional hydrological patterns (mixtures of rainfall and snowmelt) and propensity for occasional rain-on-snow events to rapidly melt winter snowpack and generate large floods (Hamlet and Lettenmaier, 2005). Stream temperatures in many areas are increasing (Peterson and Kitchell, 2001; Morrison and others, 2002; Bartholow, 2005; Kaushal and others, 2010), due to both air temperature increases and reduced summer flows that make streams more sensitive to warmer air temperatures (Isaak and others, 2010). In recent decades, wildfires have become more common across much of the western United States during periods of more frequent droughts (Westerling and others, 2006; Hoerling and Eischeid, 2007), and local stream temperature can increase in postfire environments (Gresswell, 1999; Dunham and others, 2007). Fire-related temperature increase within streams is commonly a transient phenomenon, lasting only until riparian vegetation has recovered (Gresswell, 1999); however, ongoing climate change could preclude recovery to higher stature, prefire vegetation types in some areas (McKenzie and others, 2004; van Mantgem and Stephenson, 2007), resulting in a loss of critical riparian shading. Additionally, when wildfires occur in steep mountain topographies, the vegetation that stabilize s soils on hillslopes is often killed and landslides become more prevalent (Gresswell, 1999). Landslides int o stream channels form debris flows composed of sediment slurries and dead trees that can scour channels to bedrock and further exacerbate stream heating, delay recovery of riparian areas, or extirpate fish populations (Gresswell, 1999; May and Gresswell, 2003; Dunham and others, 2007). Changes in stream environments will shift habitat distributions, sometimes unpredictably, in both time and space for many salmonid fishes. Water temperature fundamentally influences aquatic ecosystem health because distribution, reproduction, fitness, and survival of ectothermic organisms are inextricably linked to the thermal regime of the environment. Historically, research has focused on defining lethal thermal limits of salmonids (Eaton and others, 1995; Selong and others, 2001; Todd and others, 2008); however, water temperature is known to be important in biological processes at a variety of spatial scales and levels of biological organization (Rahel and Olden, 2008; McCullough and others, 2009). For instance, trout are affected directly by water temperature through feeding, metabolism, and growth rates, and indirectly by factors such as prey availability and species interactions (Wehrly and others, 2007; Rahel and Olden, 2008). Where cold water temperatures currently limit habitat suitability and distributions of some species (for example, at the highest and most northerly distributional extents; Nakano and others, 1996; Coleman and Fausch, 2007), a warming climate may gradually increase the quality and extent of suitable habitat. Over time, previously constrained populations are expected to expand into these new habitats and increase in number. Some evidence suggests this may already be happening in Alaska, where streams in recently deglaciated areas are being colonized by emigrants from nearby salmon and char populations (Milner and others, 2000). Unfortunately, many of the sensitive salmonid species that are often the focus of western managers are unlikely to benefit from future water temperature increases. Warmer stream temperatures will facilitate invasion by nonnative species that are broadly established in downstream areas into upstream areas where they will compete with native species (Rieman and others, 2006; Rahel and Olden, 2008; Fausch and others, 2009). In other cases, warmer stream temperatures will render thermally suitable habitats unsuitable in downstream areas and effect net losses of habitat because upstream distributions are often constrained by streams that are too small or steep (Hari and others, 2006; Isaak and others, 2010). Both scenarios are realistic for fish species like bull trout ( Salvelinus confluentus ) (Rieman and others, 2006; Rieman and others, 2007), the various subspecies of cutthroat trout ( Oncorhynchus clarkii ) (Williams and others, 2009), Gila trout ( Oncorhynchus gilae gilae ) (Kennedy and others, 2008), and Apache trout ( Oncorhynchus gilae apache ) (Rinne and Minckley, 1985; Carmichael and others, 1993). As native species are increasingly confined to smaller and more isolated habitats by a gradually warming climate, the effects of wildfires (whether related to lethal changes in water quality during a fire, channel debris flows, or chronic postfire warming ) could have greater proportional effects on remaining habitats (for example, Brown and others, 2001; Rieman and others, 2007). If these changes were accompanied by additional hydrologic alterations associated with changes to the magnitude, frequency, duration, timing, and rate of change of discharge patterns (Jager and others, 1999; Henderson and others, 2000), populations may begin to lose some of their historic resilience and become ever more susceptible to local extirpations. As dramatic and extensive as climatic and environmental trends are for salmonid habitats, global climate models (GCMs) project that many of these trends will continue and even accelerate until at least the middle of the 21st century (Intergovernmental Panel on Climate Change, 2007). Current projections suggest mean annual air temperatures will increase by an additional 1–3°C, and early indications are that climate trajectory is at the higher end of this range (Pittock, 2006; Raupach and others, 2007). Although predicted changes vary considerably, even the most conservative estimates suggest a warming rate that will be twice that observed during the 20th century. Projections for the midcentury are most certainly due to the effects of greenhouse gases already emitted or predicted in the short term, uncertainties of the effects of longer-term greenhouse gas emissions, short-term climate cycles, and process errors associated with climate models (Cox and Stephenson, 2007). Projections of changes in total precipitation are less certain than those for air temperatures, but most GCMs project relatively small changes in the Northwest, with the exception of slightly drier summer periods (Mote and others, 2008; Karl and others, 2009). In the Southwest, however, significant decreases (such as 15–30 percent ) are projected during most periods of the year, and this area is one of the few for which Intergovernmental Panel on Climate Change (2007) precipitation projections have a high level of certainty (Hoerling and Eischeid, 2007; Karl and others, 2009). Clearly, managers of native salmonids in the wester n United States should consider adjusting management strategies to accommodate a warmer and possibly drier future (Williams and others, 2009). Tools are needed to forecast where important changes may occur and how conservation efforts should be prioritized. In this Open-File Report, we document our initial efforts in this regard for 10 species and subspecies of inland trout and Montana Arctic grayling ( Thymallus arcticus ) across the western United States.

Arizona, California, Colorado, Idaho, Montana, Nev↗

USGS1970

Hydrology of the Upper Malad River basin, southeastern Idaho

The report area comprises 485 square miles in the Basin and Range physiographic province. It includes most of eastern' Oneida County and parts of Franklin, Bannock, and Power Counties of southeastern Idaho. Relief is about 5,000 feet; the floor of the Malad Valley is at an average altitude of about 4,400 feet. Agriculture is, by far, ,the principal economic .activity. In 1960 the population of the upper Malad River basin was about 3,600, of which about 60 percent resided in Malad City, the county seat of Oneida County. The climate is semiarid throughout the Malad Valley and its principal tributary valleys; ,above 6,500 feet the climate is subhumid. Annual precipitation ranges from about 13 inches in the lower Malad Valley to more than 30 inches on the highest peaks of the Bannock and Malad ranges. Owing to ,the normally clear atmospheric conditions, large daily and seasonal temperature fluctuations are common. Topography, distance from the Pacific Ocean, .and the general atmospheric circulation are the principal factors governing the climate of the Malad River basin. The westerlies transport moisture from the P.acific Ocean toward southeastern Idaho. The north-south tren4ing mountains flanking the basin are oriented orthogonally to the moisture flux so that they are very effective in removing precipitable water from the air. A minimum uplift of 6,000 feet is required to transport moisture from the Pacific source region; accordingly, most air masses are desiccated long before they reach the Malad basin. Heaviest precipitation is generally associated with steep pressure gradients in the midtroposphere that are so oriented as to cause a deep landward penetration of moisture from the Pacific Ocean. Annual water yields in the project area range from about 0.8 inch in the, lower Malad Valley to more than 19 inches on the high peaks north and east of Malad City. The mean annual water yield for the entire basin is 4 inches, or about 115,000 acre-feet. Evaporation is greatest in July when about 7 inches is lost from lakes, reservoirs, and waterlogged areas; losses from free-water surfaces may be as much .as 38 inches annually. An extensive ground-water reservoir consisting of sand and gravel interbedded with relatively impermeable beds of silt .and clay underlies much of the Malad Valley. Wells near the center of the valley exceeding 700 feet in depth do not reach bedrock. The Woodruff fault, which transects the constricted lower Malad Valley, is one of the main factors creating artesian conditions south of the latitude of Malad City. Recharge is obtained principally from mountain runoff which flows onto highly permeable alluvial fans surrounding the valley and from streams that flow across the valley floor. On the basis of a water balance analysis, under flow from the project area was estimated to be 28,000 acre-feet annually, surface-water outflow was 51,000 acre-feet, and transbasin imports were about 4,000 acre-feet. The principal tributaries of the Malad River are perennial along their upper and middle reaches and have well-sustained low flows. During the growing season, all surface water entering the Malad Valley is used for irrigation. Spine irrigation is practiced in the principal tributary valleys; however, a shortage of suitable reservoir sites has hampered surface-water development in these areas. The highly porous deposits underlying the Malad Valley tend to attenuate flood peaks. An unusual combination of meteorologic events early in 1962 effectively counteracted the high absorptive capacity of the valley and predisposed the basin to high flood risk. Subsequent rapid snowmelt combined with frozen ground produced the extraordinary flood of February 12, 1962. Calcium and bicarbonate commonly are the most abundant ions in the surface waters of the upper Malad River basin. In August 1967, the dissolved-solids content of streamflow ranged from 200 to 350 milligrams per liter in the middle and upper parts of the basin; however, much greater values were measured in the Malad River between Woddruff and Cherry Creek Lane. With the exception of that reach, the surface water of the project area is suitable for irrigating all but the most sensitive crops. The total water yield is not sufficient to meet all the water needs of the basin. A comprehensive water-management plan is required to ensure optimal use of the water resource.

Idaho↗

USGS2023

Modeling, mapping, and measuring the risk of freshwater invasive species across Alaska

Freshwater ecosystems of the Alaskan Arctic and Subarctic provide resources that are culturally, ecologically, and economically invaluable. Presently, these regions are relatively free of the impacts from invasive species compared to southern latitudes. To date, there have been relatively few verified introductions of aquatic invasive species (AIS) to freshwater ecosystems in Alaska. The expanding list and distribution of AIS has led to significant negative ecological and economic impacts (e.g., waterweed Elodea nuttalli ; E. canadensis and northern pike Esox Lucius introduced outside its native range in Alaska). Escalating human activity across Alaskan lands and waters, coupled with rapidly shifting environmental conditions, increases the potential for new species introductions and subsequent establishment. Creating a proactive framework for well-informed decision-making and action can improve the effectiveness of prevention efforts and bolster decision support tools that help resource managers direct limited resources. Prioritizing AIS that may be introduced and become established, as well as the locations at highest risk of invasion, is foundational to building a proactive invasive species management framework in Alaska. This project sought to identify and prioritize AIS known to be invasive in the contiguous United States, evaluate current and future habitat suitability for AIS in Alaska, and assess potential for AIS to be transported to habitats across Alaska, utilizing similar assessment methods as implemented for Bering Sea marine invasive species and non-native plants in Alaska. To accomplish this goal, the objectives of the project were to: 1) develop a formal ranked list of potential AIS to freshwater systems of Alaska; 2) assess the level of establishment risk for potential AIS by developing habitat suitability models for waterbodies across Alaska; and 3), identify potential pathways and specific vectors for high-risk AIS to invade Alaska and develop a framework for how vector analysis will be completed to understand transport risk. Overall, our goal is horizon scanning which is defined by Roy et al. (2019) as “a systematic examination of potential threats and opportunities, within a given context, and likely future developments, which are at the margin of current thinking and planning.” The scans include pathway analyses and risk screening of species present at pathway origin points, with a focus on identifying species at high risk of being introduced, becoming established, spreading, and causing harm. We refined a list of 28 AIS from a list of hundreds based on characterizations of species’ invasiveness and species’ proximity to Alaska (USGS 2020; GBIF 2022). Next, we evaluated the relative invasiveness of individual species to create an initial AIS ranking. We sought to characterize habitat suitability of AIS by selecting variables that were continental in scale, covering North America to include Alaska as well as the lower 48 states comparing natural discharge, sub-basin average terrain slope (degrees), average silt fraction, average organic carbon, lithological class, and human footprint in sub-basin in 2009. We estimated AIS habitat suitability across the entire state of Alaska using the physiological tolerances of the AIS (Appendix 2). We also evaluated pathways and vectors for the introduction of AIS (Appendix 2). Many pathways and vectors considered did not meet the criteria for Alaska or freshwater systems. Of the 28 ranked species that we categorized as very high, high, and moderate levels of invasiveness; all three risk groups included fish and mollusks (Appendix 2). One commonality of the very high-invasiveness-ranked species was the availability of Ecological Risk Screening Summary documents (USFWS, 2022) produced by U.S. Fish and Wildlife Service (USFWS), except for the goldfish ( Carassius auratus ) and the New Zealand mudsnail ( Potamopyrgus antipodarum ). The Ecological Risk Screening Summary is now available for New Zealand mudsnails. In general, fish species often ranked very high or high in invasiveness and included sportfish and aquarium fish, suggesting the importance of pathways such as aquarium trade, fishing industry, intentional (but illegal) introductions of sportfishes and aquarium fishes for establishment. The technique we used for habitat suitability models necessitated aquatic environmental datasets that were continental in scale, which was often interpolated from very coarse resolution source data layers, particularly in Alaska. Better spatial data representing aquatic environments would likely improve this approach. While the lack of introductions in Alaska and nearby provinces and states is encouraging, the lack of occurrence data for the focal species also created complications for habitat suitability modeling. Despite the challenges, the habitat suitability models indicated limited suitability for warmwater species while some species, such as Brook trout (S alvelinus fontinalis ), have high habitat suitability across Alaska no matter what threshold approach is taken. Some environmental predictors were more important than others. Specifically, the most important predictor variable, ‘frost free days,’ was critical for 15 out of 28 species as expected due to harsh winter conditions in Arctic and Subarctic regions. The second most important predictor was ‘subbasin land surface runoff’, a variable that indicates the amount of discharge and runoff, while the third most important predictor was ‘snow cover’ another indication of winter conditions. Overall, the ability to understand the effect of future climate scenarios on the establishment of AIS was challenging. A detailed dataset of freshwater temperatures and water chemistry (e.g., pH, calcium) would greatly improve the ability to predict invasiveness of freshwater species to Alaska’s ecosystems on a regional basis. Future studies may benefit from a more focused geographic scope examining a group of subbasins or a regional basin rather than the entire state. These drainages could be selected based upon the mostly likely locations of introduction pathways. The two most prevalent pathway risks for AIS are in-state transfer and stowaways/contaminants. Although there are examples of introductions from other pathways, the risk is somewhat mitigated by Alaska’s climate and regulations. However, variable application of protocols for inspection and cleaning of fishing gear, watercraft, and other similar items while traveling into Alaska as well as transferring from waterbody to waterbody within the state creates a substantial risk in introducing invasive species. We plot cumulative invasive vulnerability for all subbasins and for the top 10% of subbasins (Appendix 3).

Alaska↗

USGS2019

Natural resource condition assessment: Channel Islands National Park

The Natural Resource Condition Assessment (NRCA) Program aims to provide documentation about the current conditions of important Park natural resources through a spatially explicit, multidisciplinary synthesis of existing scientific data and knowledge. Findings from the NRCA will help Channel Islands National Park (CINP) managers to develop near-term management priorities. The central objectives of this assessment were to evaluate the current conditions and trends of key Park resources, identify important knowledge gaps, and determine key stressors and threats. Because a recent report provided an assessment of marine resources (Engle 2006), which constitute 50% of the park, this NRCA focused on terrestrial resources. For this NRCA, CINP resource managers identified that the greatest Park need was to know whether or not vegetation (primarily woody vegetation) is recovering on the Channel Islands and how this may be influencing recovery of the native terrestrial vertebrates. To address this, the CINP NRCA team evaluated the condition of island vegetation and vertebrate communities using both: 1) already available, summarized information from reports, theses, and journal articles and 2) new analyses of recently available, existing data collected on the islands. Descriptions of specific methods used to analyze available data by the NRCA team are provided within the assessment sections in Chapter 4 of this report. The Team used the Vital Signs indicators as identified by Fancy et al. (2009) for monitoring the condition of Natural Resources in U.S. National Parks. Using this framework, the focal study resource components were the five CINP islands, because these are the bio-geophysical resources of greatest interest to the CINP. Each of the islands has its own unique history of human impacts, ecological conditions, restoration efforts, and natural resource monitoring. The Team evaluated island scrub recovery by assessing changes over time in two metrics: 1) vegetation community structure (species composition, cover, and spatial extent), and 2) vertebrate abundance, relative to the reference condition of each island. The reference conditions for this NRCA were the particular island’s ecological state prior to European settlement or ranching, which represent the ecological state to which the NPS desires the park return. For each metric, the Team determined the Reference Conditions/Values, Current Condition, Trend, and Recovery Potential (based on a review of the literature and from the NRCA team’s analysis of newly available data), Threats and Stressors, Data Gaps, Overall Condition. A qualitative statement of overall current condition was created for each metric, after all data and literature relevant to the measures (i.e., vegetation and vertebrates) of each resource component (i.e., island) were reviewed and evaluated. All information gathered for this NRCA is available and managed by CINP, so that the compilation of resources would be available not only for the assessment team, but will be provided for future Park reference. Chapter 1 of this NRCA provides a descriptive background of NRCAs. Chapter 2 provides Park-wide natural resource background information, while Chapter 3 describes the overall methodological approach used in this assessment. Chapter 4 provides a detailed assessment of each island’s condition, which is then summarized Park-wide and for each island in Chapter 5. Based on both vegetation recovery and vertebrate population abundances, our assessment found Santa Cruz Island (SCI), Santa Rosa Island (SRI), San Miguel Island (SMI), and Anacapa Island (AI) to be, overall, in moderate condition and slowly recovering following the removal of non-native herbivores. The condition of Santa Barbara Island (SBI) is poor and remains in a state that is not likely to improve without assisted recovery by the Park. All islands have exhibited some level of native vegetation recovery, with most of the observed natural recovery occurring on SCI, SRI, SMI, and AI; very little recovery has occurred at present on SBI. Vegetation recovery is uneven across each island and largely limited to mesic areas, such as north-facing slopes. Areas that will likely require some assisted recovery efforts are those that are: at risk of erosion, isolated, lacking native seed banks, and plagued with high competition of non-native grasses and other invasives. Some plant communities, such as exposed upland vegetation on SRI, also have lower natural recovery potential and will likely require assisted recovery. The overall condition of the Park’s terrestrial island vertebrate species generally appears to be good and improving, with high potential for further recovery to reach pre-ranching era reference conditions. This is particularly true for vertebrates on SCI, SRI, and SMI. Although there are limited data for AI, the data that are available suggest that vertebrates on that island are in good condition and improving as well. However, the condition of SBI vertebrates is only moderate, with natural recovery potential being low, with many landbird species’ populations currently declining, extinct, or not improving. An overarching theme across the Park’s terrestrial island vertebrate populations is that many of them are in good condition because the particular animals are habitat generalists, so their population dynamics are not strongly tied to habitat conditions. However, those landbirds associated with riparian vegetation are not showing signs of recovery across the Park islands, and riparian areas appear to be one of the habitats with limited natural recovery potential on the islands. Overwhelmingly, the most critical data gap that emerged from our analysis was the lack of current vegetation maps for most of the islands (AI, SCI, SRI, SMI). The lack of this information made it difficult to assess spatial changes in island vegetation over time, and to relate those changes to observed changes in vertebrate species abundances. Therefore, we were limited in our spatial assessment of vegetation recovery for AI, SCI, SRI, and SMI, and were only able to relate the current vegetation with island landbird analysis for SBI. Another common theme across islands was the lack of information on best techniques for shrub reintroduction and recovery, and the success of invasive species removal and re-vegetation efforts. Abundance, distribution, and habitat affinities of reptiles and amphibians are poorly known for AI, SCI, SRI, and SMI, making it difficult to assess their population condition and trends, and their potential responses to shrub recovery. Mammal and landbird populations are reasonably well-sampled across most of the islands, but data are lacking for most vertebrates from AI, especially West and Middle AI where no vertebrate sampling occurs. The population status, cause of declines, and recovery needs are lacking for several landbird species across multiple islands, including loggerhead shrikes ( Lanius ludovicianus ssp.) on SCI and SRI, and Santa Cruz Island rufous crowned sparrows ( Aimophila ruficeps obscura ) on AI. Additionally, island song sparrows ( Melospiza melodia graminea ) remain extirpated on SBI and data are needed for assessing their recovery potential on the island. The potentially major threats facing the islands’ flora and fauna today are: areas of continued erosion, potential new non-native introductions, and climate change. The Park islands have already experienced warming over the last several decades due to human-induced climate change, and are projected to experience continued warming. These increasing stresses imposed by climate change may slow and inhibit natural recovery potentials for island fauna, and especially flora.

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