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Quality of surface water in Missouri, water year 2010

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources, designs and operates a series of monitoring stations on streams throughout Missouri known as the Ambient Water-Quality Monitoring Network. During the 2010 water year (October 1, 2009 through September 30, 2010), data were collected at 75 stations-72 Ambient Water-Quality Monitoring Network stations, 2 U.S. Geological Survey National Stream Quality Accounting Network stations, and 1 spring sampled in cooperation with the U.S. Forest Service. Dissolved oxygen, specific conductance, water temperature, suspended solids, suspended sediment, fecal coliform bacteria, Escherichia coli bacteria, dissolved nitrate plus nitrite, total phosphorus, dissolved and total recoverable lead and zinc, and select pesticide compound summaries are presented for 72 of these stations. The stations primarily have been classified into groups corresponding to the physiography of the State, primary land use, or unique station types. In addition, a summary of hydrologic conditions in the State including peak discharges, monthly mean discharges, and 7-day low flow is presented.

Data Series

Quality of surface water in Missouri, water year 2011

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources, designed and operates a series of monitoring stations on streams throughout Missouri known as the Ambient Water-Quality Monitoring Network. During the 2011 water year (October 1, 2010, through September 30, 2011), data were collected at 75 stations—72 Ambient Water-Quality Monitoring Network stations, 2 U.S. Geological Survey National Stream Quality Accounting Network stations, and 1 spring sampled in cooperation with the U.S. Forest Service. Dissolved oxygen, specific conductance, water temperature, suspended solids, suspended sediment, fecal coliform bacteria, Escherichia coli bacteria, dissolved nitrate plus nitrite, total phosphorus, dissolved and total recoverable lead and zinc, and select pesticide compound summaries are presented for 72 of these stations. The stations primarily have been classified into groups corresponding to the physiography of the State, primary land use, or unique station types. In addition, a summary of hydrologic conditions in the State including peak discharges, monthly mean discharges, and 7-day low flow is presented.

Missouri

Bivalve effects on the food web supporting delta smelt - A long-term study of bivalve recruitment, biomass, and grazing rate patterns with varying freshwater outflow

Executive Summary Phytoplankton is an important and limiting food source in the Sacramento-San Joaquin Delta (the Delta) and San Francisco Bay; the decline of phytoplankton biomass is one possible factor in the pelagic organism decline and specifically in the decline of the protected delta smelt. The bivalves Corbicula fluminea and Potamocorbula amurensis have been shown to control phytoplankton biomass in several locations throughout the system, and their distribution and population dynamics are therefore of great interest. We were able to describe the distribution and dynamics of bivalve biomass through use of samples collected by the California Department of Water Resources (DWR) as part of a monitoring program from 1977 to 2013. As one element of DWR&rsquo;s and the Bureau of Reclamation&rsquo;s Environmental Monitoring Program (EMP), the DWR benthic monitoring program examines the impact of water project operations on the estuary as prescribed by a series of Water Rights Decisions mandated by the State Water Resources Control Board (SWRCB). The availability of multidecade samples allowed us to examine long-term trends in biomass, recruitment, and size of bivalves at the 15 stations sampled. Biomass and grazing rate had the same basic trends, and the conclusions that we apply to biomass can be applied to grazing rate data. During winter of most years, Potamocorbula biomass was low at all locations and was near zero in the shallow San Pablo Bay station. The Potamocorbula biomass at shallow stations consistently peaked during summer and fall, but there was no consistent peak season in the deep stations. Corbicula had a much less consistent seasonal biomass pattern than Potamocorbula . However, some interannual patterns were consistent between stations. Corbicula biomass at three stations declined after 2003 (C9, D16, and D28). The Franks Tract (D19) Corbicula biomass had a baseline shift up (that is, all values were > 0) in 1985 until DWR ceased sampling at the station in 1995. Two other stations showed a similar increase in baseline but at different times; D24 shifted up after 2007 and D11 shifted up in 1991. Potamocorbula recruitment (any bivalve &le; 2.5 millimeters [mm] in length) occurred anytime between spring and fall, with bivalves at the most downstream stations in San Pablo Bay recruiting in spring and animals at the most upstream stations recruiting in fall. The bivalves at the stations between these endpoints recruited in (1) spring or (2) summer and fall (Carquinez Strait), or in some combination of two of those three seasons in Grizzly Bay. The few locations where Potamocorbula and Corbicula overlapped showed recruitment abundance opposing each other, with Potamocorbula recruits peaking during the more saline time of year and Corbicula recruits peaking during periods of lower salinities. Corbicula recruits were present throughout most of the year with some peaks in abundance, but the patterns were not seasonally consistent at any station. Mean size peaked in both bivalves in late summer and early fall and never got above a certain size; maximum size depended on location. The mean size of both bivalves has decreased over the years, with the size distributions throughout the Delta now skewed toward smaller, younger Corbicula (< 10 mm). The mean size of Potamocorbula has also become skewed toward the small, younger bivalves, with sizes in the range of 2 &ndash; 8 mm. The mean size of Potamocorbula increased from spring to fall and decreased in winter. A similar generalization is not possible with Corbicula because seasonal patterns in size varied depending on station location. Station D24 on the Sacramento River was the only location with an increase in Corbicula mean size over the sampling period. The largest mean sized Potamocorbula were seen in the channel areas, where sizes of 15 mm were common at stations D41C, 8.1, and D6; sizes in excess of 15 mm were observed at all three D4 stations during the mid 1990s. The mean size of Potamocorbula in the shoals was &asymp;5 &ndash; 7 mm in most years in Grizzly Bay (D7) and San Pablo Bay (D41A), with an increase to > 10 mm at D7 in the wet years. The largest mean sized Corbicula were in the southern Delta (C9 &asymp;25 mm during 1996 &ndash; 97 and 2012 &ndash; 2013), and the smallest average sizes were in the San Joaquin River (P8 and D16). Corbicula at the upstream Sacramento River station (D24) and in the southern Delta (C9) showed similar interannual patterns in average size although the animals at C9 were consistently larger than those at D24 were. Corbicula in Franks Tract (D19) and the Old River (D28A) south of Franks Tract were also similar in size and in interannual patterns. At the few stations where Potamocorbula and Corbicula co-occur, it appears that they did not hinder each other&rsquo;s growth. Both bivalves had large animals at D4, where Corbicula size increased coincident with the presence of Potamocorbula in 1987. Corbicula were observed in wet years prior to Potamocorbula&rsquo;s invasion at D7 (Grizzly Bay) and were capable of growing to significant size in wet years (> 20 mm in 1986).

California

Quality of surface water in Missouri, water year 2012

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources, designed and operates a series of monitoring stations on streams and springs throughout Missouri known as the Ambient Water-Quality Monitoring Network. During the 2012 water year (October 1, 2011, through September 30, 2012), data were collected at 81 stations&mdash;73 Ambient Water-Quality Monitoring Network stations, 6 alternate Ambient Water-Quality Monitoring Network stations, and 2 U.S. Geological Survey National Stream Quality Accounting Network stations. Dissolved oxygen, specific conductance, water temperature, suspended solids, suspended sediment, fecal coliform bacteria, Escherichia coli bacteria, dissolved nitrate plus nitrite as nitrogen, total phosphorus, dissolved and total recoverable lead and zinc, and select pesticide compound summaries are presented for 78 of these stations. The stations primarily have been classified into groups corresponding to the physiography of the State, primary land use, or unique station types. In addition, a summary of hydrologic conditions in the State including peak discharges, monthly mean discharges, and 7-day low flow is presented.

Missouri

Quality of surface water in Missouri, water year 2013

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources, designed and operates a series of monitoring stations on streams and springs throughout Missouri known as the Ambient Water-Quality Monitoring Network. During the 2013 water year (October 1, 2012, through September 30, 2013), data were collected at 79 stations&mdash;73 Ambient Water-Quality Monitoring Network stations, 4 alternate Ambient Water-Quality Monitoring Network stations, and 2 U.S. Geological Survey National Stream Quality Accounting Network stations. Dissolved oxygen, specific conductance, water temperature, suspended solids, suspended sediment, Escherichia coli bacteria, fecal coliform bacteria, dissolved nitrate plus nitrite as nitrogen, total phosphorus, dissolved and total recoverable lead and zinc, and select pesticide compound summaries are presented for 76 of these stations. The stations primarily have been classified into groups corresponding to the physiography of the State, primary land use, or unique station types. In addition, a summary of hydrologic conditions in the State including peak discharges, monthly mean discharges, and 7-day low flow is presented.

Missouri

Quality of groundwater used for domestic supply in the eastern Sacramento Valley and adjacent foothills, California

Summary More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the eastern Sacramento Valley and adjacent foothills where more than 25,000 residents are estimated to use privately owned domestic wells. Study results show that inorganic and organic constituents in groundwater were present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 8 and 3 percent, respectively, of the aquifer area used for domestic drinking-water supply (herein, “domestic groundwater resources”; fig. 1). The only inorganic constituent detected above regulatory benchmarks was arsenic. The only organic constituent exceeding regulatory benchmarks was the fumigant 1,2,3-trichloropropane (1,2,3-TCP). Three additional organic constituents—the disinfection by-product chloroform, the gasoline oxygenate methyl tert -butyl ether (MTBE), and the solvent tetrachloroethene (PCE)—were detected at low concentrations below one-tenth of regulatory benchmarks in 34, 10, and 10 percent of domestic groundwater resources, respectively. Total dissolved solids (TDS), iron, and manganese exceeded non-regulatory aesthetic guidelines for drinking water in 5, 10, and 26 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFASs) were detected in 29 percent of domestic groundwater resources,with 5 percent exceeding the recently enacted (April 2024) U.S. Environmental Protection Agency MCLs. Total coliform and enterococci bacteria were detected in 13 and 8 percent of domestic groundwater resources, respectively. Redox sensitive constituents in this study included arsenic, manganese, nitrate, and iron. In the lower elevation portions of the eastern Sacramento Valley study area, reducing conditions in groundwater aquifers promote elevated arsenic, iron, and manganese, and conversely lower concentrations of nitrate. The presence of the volatile organic compound (VOC) 1,2,3-TCP was related to its past history in select agricultural land uses (on orchards or vineyards) in the Sacramento Valley; however, unlike in the San Joaquin Valley where orchards and vineyards are more common, its detection frequency was low (only detected in one well in this study). Chloroform was frequently detected in this study at low levels. Chloroform is a disinfection byproduct commonly found in domestic wells treated by shock chlorination. The solvent PCE is among the most frequently detected VOCs in groundwater, which is primarily related to its long history of use and its persistence in groundwater in oxic conditions. The gasoline oxygenate MTBE was a contaminant introduced to groundwater through atmospheric exchange when it was used as a fuel additive to decrease smog inducing emissions from vehicles. Its occurrence in groundwater at low levels is expected and makes it a potentially useful tracer of relatively recent recharge water being withdrawn from wells. The PFASs are anthropogenic chemicals with hundreds of uses, and they have been incorporated into many different products, processes, and applications worldwide. Like MTBE, the occurrence of PFASs in groundwater may be in part due to atmospheric exchange, but there are several other pathways that contribute PFASs to the environment.

California

Geologic studies in Alaska by the U.S. Geological Survey, 1997

The eight papers that follow continue the series of U.S. Geological Survey (USGS) reports on investigations in the geologic sciences in Alaska. The series presents new and sometimes preliminary findings that are of interest to earth scientists in academia, government, and industry; to land and resource managers; and to the general public. Reports presented in Geologic Studies in Alaska cover a broad spectrum of topics from all parts of the State (fig. 1), which serves to emphasize the diversity of USGS efforts to meet the Nation's needs for earth-science information in Alaska. The papers in this volume are organized under the topics Resources, Geologic Framework, and Environment and Climate. Such an organization is intended to reflect the scope and objectives of USGS programs currently active in Alaska. Resource papers include one that presents detailed observations from a Mississippian Zn-Pb-Cu-Ag occurrence in the Brooks Range (Werdon). Mineralogic, chemical, and isotopic data provide the basis for a proposed relationship between this vein-breccia deposit and the shale-hosted massive sulfide deposit type, which includes the active Red Dog mine in the western Brooks Range. Also included under the topic of Resources is a paper that presents geochemical and isotopic data from the Greens Creek and Woewodski Island volcanogenic massive sulfide deposits in southeastern Alaska (Newberry and Brew). The depositional environment and sedimentological setting of Tertiary coal beds in the Matanuska and Susitna Valleys is the focus of a third paper under the topic of Resources (Flores and others). Geologic Framework studies provide background information that is the scientific basis for present and future studies of the environment, mineral and energy resources, paleoclimate, and hazards in Alaska. One paper presents the results of sedimentologic and paleontologic comparisons of lower Paleozoic, deep-water-facies rock units in central Alaska (Dumoulin and others). The authors show which of these units are likely to correlate with one another, suggest likely source regions, and provide a structural restoration of units that have been fragmented by large fault motions. A second framework paper provides a map, rock descriptions, and chemical compositions of volcanic rocks in a newly recognized, geologically young volcanic center in the Aleutian volcanic arc (Hildreth and others). A third paper presents an interesting summary of gravity changes that occurred in south-central Alaska during the great earthquake of 1964 and for the following 25 years (Barnes). Gravity changes correlate with land-elevation changes in some cases, but not in others, which means that different processes are responsible for the gravity changes.

Alaska

Simulation of the Quantity, Variability, and Timing of Streamflow in the Dennys River Basin, Maine, by Use of a Precipitation-Runoff Watershed Model

The U.S. Geological Survey (USGS), in cooperation with the Maine Department of Marine Resources Bureau of Sea Run Fisheries and Habitat, began a study in 2004 to characterize the quantity, variability, and timing of streamflow in the Dennys River. The study included a synoptic summary of historical streamflow data at a long-term streamflow gage, collecting data from an additional four short-term streamflow gages, and the development and evaluation of a distributed-parameter watershed model for the Dennys River Basin. The watershed model used in this investigation was the USGS Precipitation-Runoff Modeling System (PRMS). The Geographic Information System (GIS) Weasel was used to delineate the Dennys River Basin and subbasins and derive parameters for their physical geographic features. Calibration of the models used in this investigation involved a four-step procedure in which model output was evaluated against four calibration data sets using computed objective functions for solar radiation, potential evapotranspiration, annual and seasonal water budgets, and daily streamflows. The calibration procedure involved thousands of model runs and was carried out using the USGS software application Luca (Let us calibrate). Luca uses the Shuffled Complex Evolution (SCE) global search algorithm to calibrate the model parameters. The SCE method reliably produces satisfactory solutions for large, complex optimization problems. The primary calibration effort went into the Dennys main stem watershed model. Calibrated parameter values obtained for the Dennys main stem model were transferred to the Cathance Stream model, and a similar four-step SCE calibration procedure was performed; this effort was undertaken to determine the potential to transfer modeling information to a nearby basin in the same region. The calibrated Dennys main stem watershed model performed with Nash-Sutcliffe efficiency (NSE) statistic values for the calibration period and evaluation period of 0.79 and 0.76, respectively. The Cathance Stream model had an NSE value of 0.68. The Dennys River Basin models make use of limited streamflow-gaging station data and provide information to characterize subbasin hydrology. The calibrated PRMS watershed models of the Dennys River Basin provide simulated daily streamflow time series from October 1, 1985, through September 30, 2006, for nearly any location within the basin. These models enable natural-resources managers to characterize the timing and quantity of water moving through the basin to support many endeavors including geochemical calculations, water-use assessment, Atlantic salmon population dynamics and migration modeling, habitat modeling and assessment, and other resource-management scenario evaluations. Characterizing streamflow contributions from subbasins in the basin and the relative amounts of surface- and ground-water contributions to streamflow throughout the basin will lead to a better understanding of water quantity and quality in the basin. Improved water-resources information will support Atlantic salmon protection efforts.

Scientific Investigations Report

Fort Collins Science Center: science accomplishments for fiscal years 2012 and 2013

The Fort Collins Science Center (FORT) is a multi-disciplinary research and development center of the U.S. Geological Survey (USGS) located in Fort Collins, Colorado. Organizationally, FORT is within the USGS Southwest Region, although our work extends across the Nation and into several other countries. FORT research focuses on needs of the land- and water-management bureaus within the U.S. Department of the Interior (DOI), other Federal agencies, and those of State and non-government organizations. As a Science Center, we emphasize a multi-disciplinary science approach to provide information for resource-management decisionmaking. FORT’s vision is to maintain and continuously improve the integrated, collaborative, world-class research needed to inform effective, science-based land and resource management. Our science and technological development activities and unique capabilities support all USGS scientific Mission Areas and contribute to successful, collaborative science efforts across the USGS and DOI. We organized our report into an Executive Summary, a cross-reference table, and an appendix. The executive summary provides brief highlights of some key FORT accomplishments for each Mission Area. The table cross-references all major FY2012 and FY2013 science accomplishments with the various Mission Areas that each supports. The one-page accomplishment descriptions in the appendix are organized by USGS Mission Area and describe the many and diverse ways in which our science is applied to resource issues. As in prior years, lists of all FY2012 and FY2013 publications and other product types also are appended.

Open-File Report

Population and habitat analyses for greater sage-grouse (Centrocercus urophasianus) in the bi-state distinct population segment—2018 update

Executive Summary The Bi-State Distinct Population Segment (Bi-State DPS) of greater sage-grouse ( Centrocercus urophasianus , hereinafter “sage-grouse”) represents a genetically distinct and geographically isolated population that straddles the border between Nevada and California. The primary threat to these sage-grouse populations is the expansion of single-leaf pinyon ( Pinus monophylla ) and Utah juniper ( Juniperus osteosperma ) into sagebrush ecosystems, which fragments and reduces population connectivity and survival. Other important threats include low water availability during brood-rearing, particularly during drought, and increased predation by common ravens ( Corvus corax ), a generalist predator often associated with anthropogenic resource subsidies. Although the Bi-State DPS occurs at high elevations relative to sage-grouse range-wide, changes in historical wildfire cycles and the conversion of native shrubs to invasive annual grasslands still threaten these populations. The Bi-State DPS has undergone multiple federal status assessments and associated litigation. For example, in October of 2013, the Bi-State DPS was proposed for listing as threatened under the Endangered Species Act of 1973 by the U.S. Fish and Wildlife Service (USFWS), then withdrawn in April 2015. The withdrawal decision was challenged, and in May 2018, a Federal district court ordered the withdrawal decision to be vacated, and USFWS was required to re-open the October 2013 listing evaluation. In response, the U.S. Geological Survey (USGS), with State and Federal collaborators, embarked on a multipronged analysis to provide current and best available science regarding population status of sage-grouse within the Bi-State DPS. Using data from a long-term monitoring program, we carried out four analytical study objectives, and here, we provide preliminary results of these analyses. First, we used integrated population modeling (IPM) to predict annual population abundance and annual finite rate of population change for the Bi-State DPS, as a whole, and for each subpopulation between 1995 and 2018. Because sage-grouse exhibit population cycles (periodic increases and decreases in abundance across approximately 6- to 10-year wavelengths), we estimated trends across three nested temporal scales that represent one (11 years), two (18 years), and three (24 years) complete population cycles. These estimates of relatively long-term averaged population change account for temporal (that is, interannual) variation. Our model predicted population abundance for the Bi-State DPS during 2018 at 3,305 individuals (2,247–4,683), with the majority occupying Bodie Hills and Long Valley. The model also predicted cyclic dynamics in abundance through time with evidence of 24-year population growth and slight trends of decline over the past 18 years. Specifically, across the Bi-State DPS as a whole, we estimated annual average at 0.99, 0.99, and 1.02 over the one, two, and three population cycles, which equated to a 10.5 percent, 16.6 percent decrease, and 60.0 percent increase in abundance over the 11-, 18-, and 24-year cycles. Estimated abundance in 2018 had not reached numbers lower than those predicted during 1995. However, we found spatial variation in population trends across the three cycles. Bodie Hills subpopulation comprised the greatest (1,521) and exhibited average annual greater than 1.0 across all periods resulting in average annual increases of 7 percent. This relatively large subpopulation has grown 5 times larger than what was predicted in 1995 while experiencing cyclical dynamics within that period. Conversely, other smaller subpopulations within the Bi-State DPS exhibited average annual equal to or less than 1.0 resulting in estimated 10-year risks of extirpation ranging from 2.0 to 76.1 percent. In general, evidence of decline among smaller subpopulations was greatest for the most recent period (2008–18) compared to a period that encompassed three full population cycles (24-year). This difference coincides with an intense period of drought that began in 2012. For comparative purposes as part of this first objective, we conducted a similar analysis for populations of sage-grouse within Nevada and California but outside the Bi-State DPS. We developed a region-wide and distance-weighted IPM using lek count from Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW) databases and with telemetry data collected by USGS across 12 sage-grouse subpopulations. Our models predicted similar patterns in population cycling outside the Bi-State DPS but with much stronger evidence of long-term declines across 24 years. Specifically, median averaged across each year of the 11-, 18-, and 24-year periods resulted in average annual values of 0.94, 0.97, and 0.99, respectively. These values equate to 41.0 percent, 38.5 percent, and 21.3 percent declines over the corresponding periods. Second, we used lek count data in a state-space modeling framework to compare trends in population abundance across different spatial scales (that is, leks versus Bi-State DPS). This hierarchical framework allowed us to disentangle declines associated with climate conditions as opposed to other local level factors that might signal the need for management intervention. Specifically, we identified 7 leks that were both declining and recently decoupled from larger spatial scale trends, typically governed by climatic conditions (referred to as soft or hard signals). The goal of this analysis was to provide an early warning system that might have implications for conservation actions at local scales. Third, we developed phenological (spring, summer–fall, and winter) and reproductive life stage (nesting, early brood-rearing, and late-brood rearing) based resource selection functions using various environmental covariates. We report rankings of variable importance for each season and life stage, developed maps of habitat selection indices (HSI), binned categories representing low, moderate, and high classes of quality (where any category greater than or equal to low indicated selected habitat) for each phenological season and life stage, and produced composite maps by selected phenological and reproductive stage to estimate annual habitat. Fourth, we used for each lek within the Bi-State DPS to carry out a spatial analysis that quantified substantial changes in the distribution of occupied habitat across long- (24-year) and short- (11-year) term periods. Owing to differences among available datasets, the long-term analysis primarily reflected spatial shifts among subpopulations comprising the majority of the Bi-State DPS (that is, Bodie Hills and Long Valley) while the short-term analysis also quantified changes among subpopulations along the periphery. Over long and short-term periods, the overall distribution of occupied habitat (as measured by 99 percent utilization distributions intersecting any quantified habitat) was reduced by 20,573 ha and 55,492 ha, respectively. Occupied core areas (as measured by 50 percent utilization distributions intersecting any quantified habitat) over long-term periods were solely located in Bodie Hills and Long Valley. Although nearly all subpopulations experienced contractions in occupied overall and core distribution, Bodie Hills experienced spatial expansion that occurred with concomitant spatial contraction at Long Valley over both periods. Subpopulations at the northern (Pine Nuts), central (Sagehen) and southern (White-Mountains) extents of the Bi-State DPS also experienced spatial contraction over the short-term period. These findings, coupled with those of population trends, indicate long-term patterns in redistribution of sage-grouse from Long Valley and peripheral subpopulations to Bodie Hills. That is, sage-grouse subpopulations at the periphery are declining while the largest population at the core is increasing, which could have meaningful impacts on overall metapopulation persistence. We provide evidence for loss of occupied habitat (reduced distribution) given local extirpation of subpopulations. Fifth, we calculated percentages of selected phenological, life stage, and annual habitat that each subpopulation contributed to the Bi-State DPS. We then intersected these maps with a composite estimate of occupied habitat from the fourth objective and calculated percentages of selected habitat likely occupied by sage-grouse that each subpopulation contributed to the Bi-State DPS. These values provide evidence for loss of occupied habitat and subsequent reductions in spatial distribution given reductions in abundance and, in some cases, extirpation of leks within subpopulations. Lastly, we carried out an initial in-depth analysis of selection for irrigated pastures and wet meadows during the brood-rearing stage for the Long Valley subpopulation. We chose this subpopulation because it represents a population core, representing 26.5 percent of total sage-grouse within the Bi-State DPS, and has exhibited long-term declines in abundance and distribution. This subpopulation is highly sensitive to precipitation and other factors that influence water availability. Models predicted higher use of the interior portions of irrigated pastures and wet meadows during late brood-rearing period, which represented a potentially risky use of habitat that was exacerbated during periods of low moisture (for example, drought, reduced water delivery, or both). Sage-grouse typically used edges of riparian areas and pastures, largely because the interior of these mesic areas consisted of considerably less overhead concealment cover (for example, shrubs) that likely resulted in a higher risk of mortality. We found that a lack of water delivery to pastures in the form of overwinter precipitation or diversion ditches increased the movements of sage-grouse to the interior of pastures. Although further investigation of water delivery impacts on chick survival are warrented, our initial findings regarding resource selection may explain recent declines in population growth at Long Valley.

California, Nevada

Water availability and use pilot: Methods development for a regional assessment of groundwater availability, southwest alluvial basins, Arizona

Executive Summary: Arizona is located in an arid to semiarid region in the southwestern United States and is one of the fastest growing States in the country. Population in Arizona surpassed 6.5 million people in 2008, an increase of 140 percent since 1980, when the last regional U.S. Geological Survey (USGS) groundwater study was done as part of the Regional Aquifer System Analysis (RASA) program. The alluvial basins of Arizona are part of the Basin and Range Physiographic Province and cover more than 73,000 mi 2 , 65 percent of the State's total land area. More than 85 percent of the State's population resides within this area, accounting for more than 95 percent of the State's groundwater use. Groundwater supplies in the area are expected to undergo further stress as an increasing population vies with the State's important agricultural sector for access to these limited resources. To provide updated information to stakeholders addressing issues surrounding limited groundwater supplies and projected increases in groundwater use, the USGS Groundwater Resources Program instituted the Southwest Alluvial Basins Groundwater Availability and Use Pilot Program to evaluate the availability of groundwater resources in the alluvial basins of Arizona. The principal products of this evaluation of groundwater resources are updated groundwater budget information for the study area and a proof-of-concept groundwater-flow model incorporating several interconnected groundwater basins. This effort builds on previous research on the assessment and mapping of groundwater conditions in the alluvial basins of Arizona, also supported by the USGS Groundwater Resources Program. Regional Groundwater Budget: The Southwest Alluvial Basins-Regional Aquifer System Analysis (SWAB-RASA) study produced semiquantitative groundwater budgets for each of the alluvial basins in the SWAB-RASA study area. The pilot program documented in this report developed new quantitative estimates of groundwater budget components using recent (2000-2007) data and methods of data analysis. Estimates of inflow components, including mountain-front recharge, incidental recharge from irrigation of agriculture, managed recharge from recharge facilities, interbasin underflow from upgradient basins, and streamflow losses, are quantified for recent time periods. Mountain-front recharge is the greatest inflow component to the groundwater system and was estimated using two methods: a basin characteristic model and new precipitation information used in a previously developed regression equation. Annual mountain-front recharge for the study area for 1940-2007 estimated by the two methods is 730,000 acre-ft for the basin characteristic model and 643,000 acre-ft for the regression equation, representing 1.5 percent and 1.3 percent of precipitation, respectively. Outflow components, including groundwater withdrawals, evapotranspiration, and interbasin flow to downgradient basins, are also presented for recent time periods. Groundwater withdrawals accounted for the largest share of the water budget, with nearly 2.4 million acre-ft per year withdrawn from the study area in recent years. Evapotranspiration from groundwater was estimated at nearly 1.3 million acre-ft per year for the study area using a newly developed method incorporating vegetation indices from satellite images and land cover information. For water-budget components with temporal variation that could be assessed from available data, estimates for intervening time periods since before development were also developed. An estimate of aquifer storage change, representing both gains to and losses from the groundwater system since before development, was derived for the most developed basins in the study area using available estimates of groundwater-level changes and storage coefficients. An overall storage loss of 74.5 million acre-ft was estimated for these basins within the study area. Demonstration

Arizona

Selected ground-water data for Yucca Mountain region, southern Nevada and eastern California, through December 1999

The U.S. Geological Survey, in support of the U.S. Department of Energy, Yucca Mountain Site Characterization Project, collects, compiles, and summarizes hydrologic data in the Yucca Mountain region. The data are collected to allow assessments of ground-water resources during studies to determine the potential suitability of Yucca Mountain for storing high-level nuclear waste. Data on ground-water levels at 34 wells and a fissure (Devils Hole), ground-water discharge at 5 springs and a flowing well, and total reported ground-water withdrawals within Crater Flat, Jackass Flats, Mercury Valley, and the Amargosa Desert are presented for calendar year 1999. Data collected prior to 1999 are graphically presented and data collected by other agencies (or as part of other Geological Survey programs) are included to further indicate variations of ground-water levels, discharges, and withdrawals through time. A statistical summary of ground-water levels at seven wells in Jackass Flats is presented to indicate potential effects of ground-water withdrawals associated with U.S. Department of Energy activities near Yucca Mountain. The statistical summary includes the number of measurements, the maximum, minimum, and median water-level altitudes, and the average deviation of measured water-level altitudes for selected baseline periods and for calendar years 1992-99. At two water-supply wells median water levels for calendar year 1999 were unchanged from their respective baseline periods. At a nearby observation well, the 1999 median water level was slightly lower (0.1 foot) than its baseline period. At the remaining four wells in Jackass Flats, median water levels for 1999 were slightly higher (0.2 foot to 1.6 feet) than for their respective baseline periods.

Open-File Report

Selected ground-water data for Yucca Mountain region, southern Nevada and eastern California, through December 1998

The U.S. Geological Survey, in support of the U.S. Department of Energy, Yucca Mountain Site Characterization Project, collects, compiles, and summarizes hydrologic data in the Yucca Mountain region. The data are collected to allow assessments of ground-water resources during studies to determine the potential suitability of Yucca Mountain for storing high-level nuclear waste. Data on ground-water levels at 34 wells and a fissure (Devils Hole), ground-water discharge at 5 springs and a flowing well, and total reported ground-water withdrawals within Crater Flat, Jackass Flats, Mercury Valley, and the Amargosa Desert are presented for calendar year 1998. Data collected prior to 1998 are graphically presented and data collected by other agencies (or as part of other Geolgical Survey programs) are included to further indicate variations of ground-water levels, discharges, and withdrawals through time. A statistical summary of ground-water levels at seven wells in Jackass Flats is presented to indicate potential effects of ground-water withdrawals associated with U.S. Department of Energy activities near Yucca Mountain. The statistical summary includes the number of measurements, the maximum, minimum, and median water-level altitudes, and the average deviation of measured water-level altitudes for selected baseline periods and for calendar years 1992-98. At two water-supply wells and a nearby observation well, median water levels for calendar year 1998 were slightly lower (0.2 to 0.3 foot) than for their respective baseline periods. At the remaining four wells in Jackass Flats, median water levels for 1998 were unchanged at two wells and slightly higher (0.4 and 1.4 foot) at two wells than those for their respective baseline periods.

Open-File Report

Quality of groundwater used for domestic supply in the Modesto, Turlock, and Merced Subbasins of the San Joaquin Valley, California

Summary More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley where more than 78,000 residents are estimated to use privately owned domestic wells. Results indicate that inorganic and organic constituents in groundwater were respectively present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 37 percent and 9 percent of the aquifer area used for domestic drinking-water supplies (herein, “domestic groundwater resources”). The most prevalent inorganic constituents exceeding regulatory benchmarks were nitrate, uranium, and arsenic. The only organic constituents exceeding regulatory benchmarks were the fumigant constituents 1,2,3-trichloropropane (1,2,3-TCP) and 1,2-dibromo-3-chloropropane (DBCP), but the herbicides atrazine and simazine were detected at low concentrations below one-tenth of regulatory benchmarks in 30 percent of domestic groundwater resources. Total dissolved solids (TDS) and manganese exceeded aesthetic-based (secondary maximum contaminant level [SMCL]) benchmarks for drinking water in 3 percent and 13 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFAS) were detected in 23 percent of domestic groundwater resources, with 4 percent exceeding California state notification or response levels for specific compounds. Total coliform bacteria were detected in 20 percent of domestic groundwater resources. Elevated concentrations of nitrate, uranium, TDS, and pesticides (fumigant constituents and herbicides) are related to agricultural land use and were typically present at shallow depths up to 75 meters below land surface. Agriculturally derived constituents were detected in wells screened below the Corcoran Clay Member of the Tulare Formation (herein, “Corcoran Clay”) in the southeastern part of the study area, where the Corcoran Clay tends to be shallower and thinner than in areas to the northwest. Nitrate, uranium, and TDS were most prevalent in the northwest part of the study area proximal to the valley trough where soils are poorly drained and agricultural land uses are predominantly grain, alfalfa, and dairy farms. Pesticides tended to occur in groundwater below coarse-grained surficial deposits and within a northwest to southeast trending band along the eastern extent of the Corcoran Clay that typically demarcates the western extent of well-drained soils associated with perennial orchard crops. Elevated concentrations of arsenic tended to occur west of this band in reducing groundwater but also sometimes co-occurred with elevated nitrate in oxic groundwater, most likely because of geochemical conditions in agriculturally affected groundwater that can enhance the mobility of arsenic from aquifer sediments.

California

A climate risk management screening and assessment review for Madagascar’s Country Development Cooperation Strategy

Madagascar, a country rich in natural capital and biodiversity but with high levels of poverty, food insecurity, and population growth, faces a number of development challenges, including obtaining sustained financial support from external sources and building internal capacity to address the poor environmental, health, and socio-economic conditions. Climate change poses an increasing threat to achieving development goals and is usually considered in development plans and project designs. However, there have been numerous challenges in the effective implementation of those plans, particularly in the sustained engagement of the communities to undertake adaptive actions but also due to insufficient scientific information to inform management decisions. To support the United States Agency for International Development (USAID) in the incorporation of Climate Risk Management into their Country Development Cooperation Strategy, we synthesized the best available information on current and future climate change impacts. Climate risks in Madagascar include increasing temperatures, reduced and more variable precipitation, more frequent droughts, more intense cyclones, and rising sea levels. We synthesized the observed and projected impacts of these climatic changes on water resources, agriculture, coastal and terrestrial ecosystems and ecosystem services, fisheries, and human health. Through interviews with stakeholders in Madagascar, we also discerned ongoing and potential climate adaptation and mitigation activities and information gaps (production, access, exploitation, processing, dissemination of information). The information gathered can be used by USAID, NGOs, and other organizations on how to better incorporate climate risks into development strategies and projects in Madagascar.

Project Summary

Summary of water-quality data, October 1987 through September 1997, for Fountain and Monument Creeks, El Paso and Pueblo Counties, Colorado

Fountain and Monument Creeks, which drain parts of El Paso and Pueblo Counties in Colorado, have been sampled systematically by the U.S. Geological Survey for many years to obtain records of water-quality properties and constituents; the data are stored in the National Water Inventory System. Statistical summaries of these data indicate that they have spatial and temporal trends. Comparison of water-quality data to in-stream regulatory standards, some of which were calculated in this report, indicate that some exceedances are widespread in the system and that some occur locally. Nonparametric tests to quantitatively detect monotonic trends in water-quality data indicate that many water-quality properties and constituents do not have significant monotonic trends; detected trends were mostly downward.

Water-Resources Investigations Report

Statistical summaries of Arizona streamflow data

The report includes statistical summaries of streamflow data for 143 gaging stations in Arizona. Statistical summaries are given for all active streamflow-gaging stations at which flow is unregulated, for discontinued stations that have at least 5 years of record, and for a few stations at which the flow is partly regulated. The summaries include (1) log-Pearson Type III flood-frequency data for selected streamflow-gaging stations, (2) annual peak discharges and gage heights and annual volumes, (3) duration tables of daily discharges, (4) lowest mean discharges, (5) highest mean discharges, (6) statistics on normal monthly mean discharges, and (7) statistics on normal annual mean discharges.

Arizona

A geospatial approach to identify water quality issues for National Wildlife Refuges in Oregon and Washington

Many National Wildlife Refuges (Refuges) have impaired water quality resulting from historic and current land uses, upstream sources, and aerial pollutant deposition. Competing duties limit the time available for Refuge staff to identify and evaluate potential water quality issues. As a result, water quality–related issues may not be resolved until a problem has already arisen. This study developed a geospatial approach for identifying and prioritizing water quality issues affecting natural resources (including migratory birds and federally listed species) within Refuge boundaries. We assessed the location and status of streams pursuant to the Clean Water Act in relation to individual Refuges in Oregon and Washington, United States. Although twelve Refuges in Oregon (60%) and eight Refuges in Washington (40%) were assessed under the Clean Water Act, only 12% and 3% of total Refuge stream lengths were assessed, respectively. Very few assessed Refuge streams were not designated as impaired (0% in Oregon, 1% in Washington). Despite the low proportions of stream lengths assessed, most Refuges in Oregon (70%) and Washington (65%) are located in watersheds with approved total maximum daily loads. We developed summaries of current water quality issues for individual Refuges and identified large gaps for Refuge-specific water quality data and habitat utilization by sensitive species. We conclude that monitoring is warranted on many Refuges to better characterize water quality under the Clean Water Act.

Oregon, Washington