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USGS2023

Using Global Fiducials Library high-resolution imagery, commercial satellite imagery, Landsat and Sentinel satellite imagery, and aerial photography to monitor change at East Timbalier Island, Louisiana, 1953–2021

This report documents morphological changes between 1953 and 2021 at East Timbalier Island, Louisiana, a Gulf of Mexico barrier island. East Timbalier Island, which was located west of the Mississippi River Delta at the front of Timbalier Bay, was one of the most rapidly changing barrier islands on Earth. Since aerial photographs were initially taken in 1953, the Island steadily lost length and area, finally eroding away by early summer 2021. After major storm events, sediment eroded from the Island and migrated hundreds of meters north. In August 1992, Hurricane Andrew breached the Island in several places, resulting in increased erosion and land loss. Until it completely eroded away, the Island underwent a cycle of washovers, vegetation removal, breaching, and erosion with sediment transport to the north. Satellite imagery shows that three such cycles occurred between 1992 and 2017, despite the partial restoration of the Island between 1998 and 2000. Each cycle increased the distance between the Island and the mainland to the east, reducing both the sediment supply from the east and the protection that Timbalier Bay and the adjacent coastal lands received from the barrier island. Previously, the U.S. Geological Survey (USGS) National Civil Applications Center used 1-meter resolution imagery archived at the USGS Global Fiducials Library (GFL), collected between 2000 and 2010 by U.S. National Imaging Systems, to monitor the changes at the Island. New research expands this study retrospectively and prospectively using aerial photography collected from 1953 to 2012 and in 2020; declassified imagery collected in 1962, 1972, and 1975; DigitalGlobe satellite imagery collected since 2004; Landsat satellite imagery collected since 1972; Sentinel–2 satellite imagery collected since 2015; and GFL imagery collected from 1991 to 2020.

Louisiana↗
USGS2010

Background and introduction: Chapter 1

The Salt Cedar and Russian Olive Control Demonstration Act of 2006 (Public Law 109-320; hereafter the Act) directs the Department of the Interior to submit a report to Congress1 that includes an assessment of several issues surrounding these two nonnative trees, now dominant components of the vegetation along many rivers in the Western United States. Specifically, the Act calls for “…an assessment of the extent of salt cedar and Russian olive infestation on public and private land in the western United States,” which shall “A) consider existing research on methods to control salt cedar and Russian olive trees; B) consider the feasibility of reducing water consumption by salt cedar and Russian olive trees; C) consider methods of and challenges associated with the revegetation or restoration of infested land; and D) estimate the costs of destruction of salt cedar and Russian olive trees, related biomass removal, and revegetation or restoration and maintenance of the infested land.” Finally, the Act calls for discussion of “(i) long-term management and funding strategies…that could be implemented by Federal, State, tribal, and private land managers and owners to address the infestation by salt cedar and Russian olive; (ii) any deficiencies in the assessment or areas for additional study; and (iii) any field demonstrations that would be useful in the effort to control salt cedar and Russian olive.” The primary intent of this report is to provide the science assessment called for under the Act. A secondary purpose is to provide a common background for applicants for prospective demonstration projects, should funds be appropriated for this second phase of the Act. In addition to relying on the direction provided under Section C of the Act, the authors of this report also drew upon the detailed list of considerations presented in Section E of the Act to guide development of more expansive discussions of topics relevant to saltcedar and Russian olive control efforts. In addition to the legislative context described above, this chapter describes the geographic and environmental contexts surrounding the Act, including key terminology used in subsequent chapters of this report. Subsequent chapters synthesize the state-of-the-science on the following topics: distribution and abundance (extent) of saltcedar and Russian olive in the Western United States, potential for water savings associated with control of saltcedar and Russian olive and associated restoration, considerations related to wildlife use of saltcedar and Russian olive habitat or restored habitats, methods to control saltcedar and Russian olive, possible utilization of dead biomass following control, and approaches and challenges associated with revegetation or restoration following control. A concluding chapter includes discussion of possible long-term management strategies, areas for additional study, potentially useful field demonstrations, and a planning process for on-the-ground projects involving removal of saltcedar and Russian olive.

Book chapter↗
USGS2008

Diagnosis of an intense atmospheric river impacting the pacific northwest: Storm summary and offshore vertical structure observed with COSMIC satellite retrievals

This study uses the new satellite-based Constellation Observing System for Meteorology, Ionosphere, and Climate (COSMIC) mission to retrieve tropospheric profiles of temperature and moisture over the data-sparse eastern Pacific Ocean. The COSMIC retrievals, which employ a global positioning system radio occultation technique combined with "first-guess" information from numerical weather prediction model analyses, are evaluated through the diagnosis of an intense atmospheric river (AR; i.e., a narrow plume of strong water vapor flux) that devastated the Pacific Northwest with flooding rains in early November 2006. A detailed analysis of this AR is presented first using conventional datasets and highlights the fact that ARs are critical contributors to West Coast extreme precipitation and flooding events. Then, the COSMIC evaluation is provided. Offshore composite COSMIC soundings north of, within, and south of this AR exhibited vertical structures that are meteorologically consistent with satellite imagery and global reanalysis fields of this case and with earlier composite dropsonde results from other landfalling ARs. Also, a curtain of 12 offshore COSMIC soundings through the AR yielded cross-sectional thermodynamic and moisture structures that were similarly consistent, including details comparable to earlier aircraft-based dropsonde analyses. The results show that the new COSMIC retrievals, which are global (currently yielding ???2000 soundings per day), provide high-resolution vertical-profile information beyond that found in the numerical model first-guess fields and can help monitor key lower-tropospheric mesoscale phenomena in data-sparse regions. Hence, COSMIC will likely support a wide array of applications, from physical process studies to data assimilation, numerical weather prediction, and climate research. ?? 2008 American Meteorological Society.

Monthly Weather Review↗
USGS2025

Comparative olfactory and behavioral response of grass carp ( Ctenopharyngodon idella ), bighead carp ( Hypophthalmichthys nobilis ), silver carp ( H. molitrix ) and black carp ( Mylopharyngodon piceus ) to chemical stimuli

Grass carp ( Ctenopharyngodon idella ), bighead carp ( Hypophthalmichthys nobilis ), silver carp (H. molitrix), and black carp ( Mylopharyngodon piceus ), collectively “invasive carp,” represent an ongoing management problem in the Mississippi and Missouri River basins of North America. Development of strategies to control their populations are also ongoing. As a follow-up to previous research, we tested two amino acids and an amino acid-based commercial feeding stimulant as olfactory stimulants that may attract or repel these species. We employed a two-pronged approach to test how invasive carp respond to the olfactory stimulants, using an electro-olfactogram (EOG) to measure olfactory response and a tank with a stimulant in one half to test behavioral response. Consistent with previous research, we found grass carp had a higher magnitude of EOG response to stimulants compared to bighead and, marginally, silver carp. Bighead, silver, and black carp did not differ from each other in EOG response. Grass carp produced significantly greater lysine and a marginally greater alanine EOG response than bighead and silver carp and significantly greater commercial feeding stimulant response than bighead carp. Black carp had marginally greater lysine response than bighead carp. In the behavioral tests, grass carp generally avoided the stimuli tested, while bighead carp were generally attracted to stimuli. Neither black nor silver carp showed a clear attraction or avoidance toward the stimuli tested. To further evaluate these solutions for management applications additional testing in ponds or open water may be necessary.

Management of Biological Invasions↗
USGS1988

Assessment of the role of bottomland hardwoods in sediment and erosion control

Drainage and clearing of bottomland hardwoods have long been recognized by the U.S. Environmental Protection Agency (EPA) and the U.S. Fish and Wildlife Service (Service) as important impacts of Federal water projects in the lower Mississippi River Valley. More recently, the water quality impacts of such projects (e.g., increases in sediments, nutrients, and pesticides) have also become of concern. In 1984, in an effort to better define problems concerning wetland losses and water degradation, EPA initiated a cooperative project with the Western Energy and Land Use Team (now the National Ecology Research Center) of the Service. Three phases of the project were identified: 1. To collect existing literature and data; 2. To select, develop, and test the utility of methods to quantify the relationships between land use, cover types, soils, hydrology, and water quality (as represented by sediment); and 3. To apply selected methodologies to several sites within the Yazoo Basin of Mississippi to determine the, potential effectiveness of various management alternatives to reduce sediment yield, increase sediment deposition, and improve water quality. Methods development focused on linking a simulation of water and sediment movement to a computerized geographic information system. We had several objectives for the resulting model. We desired that it should: 1. Estimate the importance of bottomland and hardwoods as a cover type that performs the functions of erosion and sediment control, 2. Simulate effects of proportions of ' various cover types and their specific spatial configurations, 3. Be applicable to moderately large spatial areas with minimal site-specific calibration, 4. Simulate spatial patterns of sediment loss-gain over time, and 5. Represent both sediment detachment and transport. While it was recognized that impacts and management alternatives could be sorted roughly into landscape measures and channel measures, the decision was made to focus study efforts mainly on landscape measures. Landscape measures include altered drainage and flooding patterns, altered cover types (e.g., conversion of bottomland hardwoods to agricultural crops, reforestation of cropland to bottomland hardwoods, and creation of riparian buffer strips), altered cropping and tillage patterns, altered routing of water, and creation of buffer strips along wetlands and channel margins. Channel measures include vegetative bank stabilization, grade control structures, and regulation of channel water volume and velocity. During the first year of the study, EPA decided not to fund the third phase of the project. This required considerable rescoping of the project with the result that application of the sediment mobilization, routing, and deposition models to various management alternatives and portions of the Yazoo Basin was somewhat restricted. We believe, however, that this report will provide a good understanding of the various modes of sediment mobilization, transport, and deposition within the Yazoo Basin, as well as of the role of bottomland hardwoods. The model developed in this study could be applied to a variety of management or mitigation alternatives prior to implementation to determine their relative effectiveness. Policy, political, and socio-economic consequences of any proposed management/mitigation practice, however, must ultimately be taken into consideration by those charged with management of water resources within the Yazoo Basin before any practice is implemented. This study makes no effort to judge the feasibility of management alternatives in this regard.

Report↗
USGS2023

Using recovered radio transmitters to estimate positioning error and a generalized Monte Carlo simulation to incorporate error into animal telemetry analysis

Background Mobile radio tracking is an important tool in fisheries research and management. Yet, the accuracy of location estimates can be highly variable across studies and within a given dataset. While some methods are available to deal with error, they generally assume a static value for error across all detections. We provide a novel method for making detection-specific error estimates using detections of recovered transmitters (i.e., mortalities or tag expulsion). These data are used to establish the relationship between received signal strength (RSS) and positional error, which can then be used to predict positional error of detections for fish at large. We then show how detection-specific estimates can be integrated into a Monte Carlo framework to analyze movement in ways robust to spatial uncertainty. Results In a telemetry study in a large river (~ 90 m), we recovered 22 transmitters to estimate and model positional error. Error averaged 94 m (range = 1–727 m) for transmitters tracked by researchers on foot using a Yagi antenna, and 200 m (range = 1–1141 m) for transmitters tracked from vehicles using an omnidirectional whip antenna. Transmitters located near roads were tracked more accurately with both methods. Received signal strength was a strong predictor of positional error ( r 2 = 0.86, ground tracking; 0.65, tracking from truck) and was thus used to make detection-specific estimates of error for detections of fish at large. Monte Carlo analysis for a binary movement classification revealed that only 18% of location estimates could be confidently assigned to movement ( p < 0.05); the remainder were associated with stasis or movement that was within the range of positional error. Ignoring positional error led to positive bias of up to 1300% in individual movement estimates and varied seasonally—it was highest when fish were inactive and lowest when fish were most active. Conclusion Using recovered transmitters and RSS models to estimate telemetry error is a viable alternative to staged ‘dummy transmitter’ trials and assuming error is a constant. Our proposed approaches to incorporate detection-specific error estimates into analysis are broadly applicable and can ‘make the most’ out of highly accurate detections while also cautiously extracting spatial information from less-accurate detections.

Animal Biotelemetry↗
USGS2020

Fate and behavior tools related to inland spill response—Workshop on the U.S. Geological Survey’s role in Federal science support

Executive Summary There is a growing body of tools available for science support for determining the fate and behavior of industrial and agricultural chemicals that are rapidly injected (“spilled”) into aquatic environments. A 2-day roundtable-style workshop was held by the U.S. Geological Survey (USGS) in Middleton, Wisconsin, in December 2017 to describe and explore existing Federal science support for spill fate and behavior tools used for inland spills, ongoing and new fate and behavior studies, and science gaps in planning and response tools as part of the USGS Midcontinent Region’s efforts to include spill response as part of its strategic plans. A total of 28 attendees representing a variety of Federal, State, and regional entities presented on programs and tools used in various aspects of spill response. Most programs and tools discussed were for spills in riverine environments but tools and applications for spills in lakes, on land surfaces, in urban storm sewer networks, and groundwater also were discussed. A primary workshop focus was to facilitate communication and increase potential for future collaboration among agencies for inland spill science support. The role and need for more USGS science support within the inland spill community was discussed. Enhanced communication is needed within the USGS and the U.S. Department of the Interior science programs, as well as within and among other agencies that do emergency planning and response. A main conclusion of the workshop was that there are untapped resources of the USGS outlined in the agency’s science strategy that could strengthen science support for fate and behavior tools in inland areas, especially in the Upper Mississippi River, Ohio River, and Great Lakes Basins where large freshwater resources overlap with dense corridors of oil and hazardous substances, with transportation networks, and with large populations centers. Fate and behavior tools are being developed quickly for inland spill response by multiple Federal agencies in partnership with local and regional entities. Applicability of these tools ranges from planning and preparedness, to the early stages of spill response for protection of human life and property, and to the application of monitoring and models to assess the long-term consequences of spills. Key findings from the workshop, with an emphasis on potential further development of USGS science support, include the following: •The national and regional response to spills occurs within an established system that must be respected by all parties involved in spill response. The USGS’s role is to support spill responders who are physically working at a spill scene, deploying booms and using other efforts to contain and recover spilled materials. •The USGS has tools that have been used throughout spill response operations, from early response to recovery and restoration. Developing a more formal role for the USGS to participate in science support for inland spills on a consistent basis is a desired outcome. This will require the USGS to improve internal and external communication and would be best accomplished by assigning one or more coordinator positions within the agency to plan and oversee USGS spill-response efforts. More involvement of the USGS on National and Regional Response Teams, especially in the realm of the Science and Technology Subcommittees, will gofar in increasing external communication and integration of fate and behavior tools. •Rapid response to spills requires modeling and mapping of plumes and associated time-of-travel estimation for a range of stream sizes across the United States. Many existing models use USGS streamgage data and the USGS National Hydrography Dataset. Nearly all existing models would benefit from updated linkages to USGS StreamStats and its soon-to-be released time-of-travel estimates,real-time velocity, stream morphology, and slope data. Integrating USGS tools with those from other agencies could be done to better serve the larger spill response community. • A problem is that existing models to rapidly predict plume extent, as well as more followup/longer-term fate and transport models, can be unknown or unavailable to spill responders. Thus, creating and strengthening linkages among USGS scientists skilled at using these tools is needed to support spill response with the on-scene responders. • Research for inland spill fate and behavior done outside of an immediate spill response can assist with spill planning and preparedness by (1) revealing sites likely to experience spills in the future (high-risk sites) and (2) understanding how a spilled substance might behave under a range of environmental conditions. However, USGS research on this topic has been scarce and subject to funding availability. Examples include the 2010 Line 6B Spill release into the Kalamazoo River in Michigan, where the USGS provided science support for a variety of fate and behavior tools for stream and impoundment environments. A long-term research site in Bemidji, Minnesota, provides important insights into transformations and longevity of spilled oil in groundwater and groundwater-surface water interactions. • Linking stream models to other components of this inland environment, including groundwater, overland flow, and karst, is needed. Stream network data can be linked to underground conduits such as storm sewers and karst groundwater systems. Stream models can also be linked with geospatial data such as that contained in U.S. Environmental Protection Agency’s interactive mapping tools. • The USGS is uniquely qualified to collect water-quality data during spills in the United States because of its many geographically dispersed water science centers, its knowledge and preparedness for flood measurement and documentation, and its cadre of skilled water-quality employees. Rapid-deployment gages, used for floods, could also be used for spills if they included spill-specific sensors. Coordinated expertise at USGS water and environmental science centers can be used for monitoring spill effects and for assessing risk to water quality and ecological communities. • Scientists at the USGS have proven capable of providing science coordination and technical assistance within the Incident Command Structure at the request of the lead on-scene coordinator. This external coordination, as well as internal communication within USGS Water, Hazards, and Ecosystems Mission Areas, could be improved by establishing and naming a USGS spills coordinator. Scott Morlock, Jo Ellen Hinck, and Faith Fitzpatrick are currently (2017) serving in informal coordination roles in addition to their traditional duties.

Open-File Report↗
USGS2011

Exchange of Groundwater and Surface-Water Mediated by Permafrost Response to Seasonal and Long Term Air Temperature Variation

Permafrost dynamics impact hydrologic cycle processes by promoting or impeding groundwater and surface water exchange. Under seasonal and decadal air temperature variations, permafrost temperature changes control the exchanges between groundwater and surface water. A coupled heat transport and groundwater flow model, SUTRA, was modified to simulate groundwater flow and heat transport in the subsurface containing permafrost. The northern central Tibet Plateau was used as an example of model application. Modeling results show that in a yearly cycle, groundwater flow occurs in the active layer from May to October. Maximum groundwater discharge to the surface lags the maximum subsurface temperature by two months. Under an increasing air temperature scenario of 3?C per 100 years, over the initial 40-year period, the active layer thickness can increase by three-fold. Annual groundwater discharge to the surface can experience a similar three-fold increase in the same period. An implication of these modeling results is that with increased warming there will be more groundwater flow in the active layer and therefore increased groundwater discharge to rivers. However, this finding only holds if sufficient upgradient water is available to replenish the increased discharge. Otherwise, there will be an overall lowering of the water table in the recharge portion of the catchment.

Geophysical Research Letters↗
USGS2018

Managing conflicts in the River of Grass

Chances are, you would not pack up and move to a new home without first researching the neighborhood, reviewing your finances, and maybe investigating schools nearby. Similarly, you would not buy the first car you find on a magazine cover without first reviewing the technical specifications, exploring your options, and perhaps taking a test drive. Even when making simple purchases online, you probably shop around, check out customer reviews, and scan seller feedback ratings. Rarely do we act on impulse alone when faced with decisions. Rather, we typically start with a vision of what we want before gathering the necessary information, weighing our options, prioritizing our values, and evaluating possible tradeoffs. In making choices that range from lighthearted to life-changing, we use this commonsense strategy every day of our lives. Environmental decision-making is no different. For decades, natural resource managers faced with complicated problems have made decisions by breaking them into smaller components that are easier to approach. And like our day-to day decisions, the process is ideally guided by a shared vision of the future. However, it can become complicated when multiple, seemingly disparate views on what the future should hold emerge. As Lewis Carroll once wrote, “If you don’t know where you are going, any road will get you there.” Divining a vision of the future for the Florida Everglades and making supporting decisions is a complex undertaking. But unlike Alice thrust through the looking glass, we have tools and techniques to help us make sense of it all. The application of tools to help decision-making can move us closer to the successful restoration of this imperiled landscape.

Florida↗
USGS2016

An intercomparison of remote sensing river discharge estimation algorithms from measurements of river height, width, and slope

The Surface Water and Ocean Topography (SWOT) satellite mission planned for launch in 2020 will map river elevations and inundated area globally for rivers >100 m wide. In advance of this launch, we here evaluated the possibility of estimating discharge in ungauged rivers using synthetic, daily ‘‘remote sensing’’ measurements derived from hydraulic models corrupted with minimal observational errors. Five discharge algorithms were evaluated, as well as the median of the five, for 19 rivers spanning a range of hydraulic and geomorphic conditions. Reliance upon a priori information, and thus applicability to truly ungauged reaches, varied among algorithms: one algorithm employed only global limits on velocity and depth, while the other algorithms relied on globally available prior estimates of discharge. We found at least one algorithm able to estimate instantaneous discharge to within 35% relative root-mean-squared error (RRMSE) on 14/16 nonbraided rivers despite out-of-bank flows, multichannel planforms, and backwater effects. Moreover, we found RRMSE was often dominated by bias; the median standard deviation of relative residuals across the 16 nonbraided rivers was only 12.5%. SWOT discharge algorithm progress is therefore encouraging, yet future efforts should consider incorporating ancillary data or multialgorithm synergy to improve results

Water Resources Research↗
USGS2019

Advances in computational morphodynamics using the International River Interface Cooperative (iRIC) software

Results from computational morphodynamics modeling of coupled flow-bed-sediment systems are described for ten applications as a review of recent advances in the field. Each of these applications is drawn from solvers included in the public-domain International River Interface Cooperative (iRIC) software package. For mesoscale river features such as bars, predictions of alternate and higher mode river bars are shown for flows with equilibrium sediment supply and for a single case of oversupplied sediment. For microscale bed features such as bedforms, computational results are shown for the development and evolution of two-dimensional bedforms using a simple closure-based two-dimensional model, for two- and three-dimensional ripples and dunes using a three-dimensional large-eddy simulation flow model coupled to a physics-based particle transport model, and for the development of bed streaks using a three-dimensional unsteady Reynolds-averaged Navier-Stokes solver with a simple sediment-transport treatment. Finally, macroscale or channel evolution treatments are used to examine the temporal development of meandering channels, a failure model for cantilevered banks, the effect of bank vegetation on channel width, the development of channel networks in tidal systems, and the evolution of bedrock channels. In all examples, computational morphodynamics results from iRIC solvers are shown to compare well to observations of natural bed morphology. For each of the three scales investigated here, brief suggestions for future work and potential research directions are offered.

Earth Surface Processes and Landforms↗
USGS2006

Preface: Bridging the gap between theory and practice on the upper Mississippi River

In July 1994, the Upper Mississippi River (UMR) served as a nexus for coalescing scientific information and management issues related to worldwide floodplain river ecosystems. The objective of the conference ‘Sustaining the Ecological Integrity of Large Floodplain Rivers: Application of Ecological Knowledge to River Management’, was to provide presentations of current ideas from the scientific community. To translate the many lessons learned on other river systems to operational decisions on the UMR, a companion workshop for managers and the general public was held immediately after the conference. An immediate local need for such sharing has existed for several years, as the U.S. Corps of Engineers is currently planning commercial navigation activities that will influence the ecological integrity of the river over the next half century. Recently, other equally important management issues have surfaced, including managing the river as an element of the watershed, and assessing its ecological value as a system instead of a collection of parts (Upper Mississippi River Conservation Committee, 1993). Regional and state natural resource agencies are becoming more convinced that they need to address these issues within their own authorities, however spatially limited, rather than relying on the U.S. Corps of Engineers to manage the ecosystem as an adjunct to its purpose of navigation support.

Mississippi River↗
USGS2015

Concentrations and distributions of metals associated with dissolved organic matter from the Suwannee River (GA, USA)

Concentrations and distributions of metals in Suwannee River (SR) raw filtered surface water (RFSW) and dissolved organic matter (DOM) processed by reverse osmosis (RO), XAD-8 resin (for humic and fulvic acids [FA]), and XAD-4 resin (for “transphilic” acids) were analyzed by asymmetrical flow field-flow fractionation (AsFlFFF). SR samples were compared with DOM samples from Nelson's Creek (NLC), a wetland-draining stream in northern Michigan; previous International Humic Substances Society (IHSS) FA and RO samples from the SR; and an XAD-8 sample from Lake Fryxell (LF), Antarctica. Despite application of cation exchange during sample processing, all XAD and RO samples contained substantial metal concentrations. AsFlFFF fractograms allowed metal distributions to be characterized as a function of DOM component molecular weight (MW). In SR RFSW, Fe, Al, and Cu were primarily associated with intermediate to higher than average MW DOM components. SR RO, XAD-8, and XAD-4 samples from May 2012 showed similar MW trends for Fe and Al but Cu tended to associate more with lower MW DOM. LF DOM had abundant Cu and Zn, perhaps due to amine groups that should be present due to its primarily algal origins. None of the fractograms showed obvious evidence for mineral nanoparticles, although some very small mineral nanoparticles might have been present at trace concentrations. This research suggests that AsFlFFF is important for understanding how metals are distributed in different DOM samples (including IHSS samples), which may be key to metal reactivity and bioavailability.

Georgia↗
USGS2019

Application of multistate modeling to estimate salmonid survival and movement in relation to spatial and temporal variation in metal exposure in a large mining-impacted river

We used telemetry and multistate modeling to estimate survival and movement of brown trout Salmo trutta and westslope cutthroat trout Oncorhynchus clarkii lewisi in relation to dissolved copper concentrations in 189 km of the upper Clark Fork River, Montana, a mining-impacted river in western Montana. Annual survival estimates for both brown trout (range, 0.27-0.53) and westslope cutthroat trout (range, 0.001-0.34) over the three-year study were low and variable within the study area, with survival negatively related to level of copper exposure. Survival probability for brown trout and westslope cutthroat trout in the uppermost river segment, where dissolved copper concentrations frequently exceeded acute criteria for aquatic life (range, 31-60 d >13.4 µg·L-1), was 2.1 times and 122 times lower, respectively, compared to survival rates in the lowermost segment that had relatively low dissolved copper (0 d exceedance of acute concentration). Seasonal differences in survival also appeared to be related to copper exposure level. Lowest survival for both species occurred in the spring-summer period when dissolved copper concentrations were elevated coincident with higher discharge. Movement among study segments was generally low, and cutthroat trout in particular showed low movement into the uppermost river segment with the most elevated copper levels. Both species showed high rates of movement into tributaries, which coincided with their respective spawning migrations rather than as an apparent avoidance of elevated copper levels. Our research design provided an uncommon opportunity to directly relate the degree of contaminant exposure to estimates of fish survival and movement at a population-level over a large spatial scale. This linkage between survival rate and level of copper exposure for both brown trout and cutthroat trout in the upper Clark Fork River suggests that additional removal of tailings deposits could improve survival rates.

Montana↗
USGS2021

Pesticides in US Rivers: Regional differences in use, occurrence, and environmental toxicity, 2013 to 2017

Pesticides pose a threat to the environment, but because of the substantial number of compounds, a comprehensive assessment of pesticides and an evaluation of the risk that they pose to human and aquatic life is challenging. In this study, improved analytical methods were used to quantify 221 pesticide concentrations in surface waters over the time period from 2013 to 2017. Samples were collected from 74 river sites in the conterminous US (CONUS). Potential toxicity was assessed by comparing surface water pesticide concentrations to standard concentrations that are considered to have adverse effects on human health or aquatic organisms. The majority of pesticide use is related to agriculture, and agricultural production varies across the CONUS. Therefore, our results were summarized by region (Northeast, South, Midwest, West and Pacific), with the expectation that crop production differences would drive variability in pesticide use, detection frequency, and benchmark exceedance patterns. Although agricultural pesticide use was at least 2.5 times higher in the Midwest (49 kg km −2 ) than in any of the other four regions (Northeast, South, West, and Pacific, 3 to 21 kg km −2 ) and the average number of pesticides detected in the Midwest was at least 1.5 higher ( n = 25) than the other four regions ( n = 8 to n = 16), the potential toxicity results were more evenly distributed. At least 50% of the sites within each of the 5 regions had at least 1 chronic benchmark exceedance. Imidacloprid posed the greatest potential threat to aquatic life with a total of 245 benchmark exceedances at 60 of the 74 sites. These results show that pesticides persist in the environment beyond the site of application and expected period of use. Continued monitoring and research are needed to improve our understanding of pesticide effects on aquatic and human life.

Science of the Total Environment↗
USGS2018

A multiscale investigation of habitat use and within-river distribution of sympatric sand darter species

The western sand darter Ammocrypta clara, and eastern sand darter Ammocrypta pellucida, are sand-dwelling fishes of conservation concern. Past research has emphasized the importance of studying individual populations of conservation concern, while recent research has revealed the importance of incorporating landscape scale processes that structure habitat mosaics and local populations. We examined habitat use and distributions of western and eastern sand darters in the lower Elk River of West Virginia. At the sandbar habitat use scale, western sand darters were detected in sandbars with greater area, higher proportions of coarse grain sand and faster bottom current velocity, while the eastern sand darter used a wider range of sandbar habitats. The landscape scale analysis revealed that contributing drainage area was an important predictor for both species, while sinuosity, which presumably represents valley type, also contributed to the western sand darter’s habitat suitability. Sandbar quality (area, grain size, and velocity) and fluvial geomorphic variables (drainage area and valley type) are likely key driving factors structuring sand darter distributions in the Elk River. This multiscale study of within-river species distribution and habitat use is unique, given that only a few sympatric populations are known of western and eastern sand darters.

West Virginia↗
USGS2024

Differentiating cheatgrass and medusahead phenological characteristics in western United States rangelands

Expansions in the extent and infestation levels of exotic annual grass (EAG) within the rangelands of the western United States are well documented. Land managers are tasked with developing plans to limit EAG spread and prevent irreversible ecosystem deterioration. The most common EAG species and the subject of extensive study is Bromus tectorum (cheatgrass). Cheatgrass has spread rapidly in western rangelands since its initial invasion more than 100 years ago. Another concerning aggressive EAG, Taeniatherum caput-medusae (medusahead), is also commonly found in some of these areas. To control the spread of EAGs, researchers have investigated applying several control methods during different developmental stages of cheatgrass and medusahead. These control strategies require accurate maps of the timing and spatial patterns of the developmental stages to apply mitigation strategies in the correct areas at the right time. In this study, we developed annual phenological datasets for cheatgrass and medusahead with two objectives. The first objective was to determine if cheatgrass and medusahead can be differentiated at 30 m resolution using their phenological differences. The second objective was to establish an annual phenology metric regression tree model used to map the growing seasons of cheatgrass and medusahead. Harmonized Landsat and Sentinel-2 (HLS)-derived predicted weekly cloud-free 30 m normalized difference vegetation index (NDVI) images were used to develop these metric maps. The result of this effort was maps that identify the start and end of sustained growing season time for cheatgrass and medusahead at 30 m for the Snake River Plain and Northern Basin and Range ecoregions. These phenological datasets also identify the start and end-of-season NDVI values, along with maximum NDVI throughout the study period. These metrics may be utilized to characterize annual growth patterns for cheatgrass and medusahead. This approach can be utilized to plan time-sensitive control measures such as herbicide applications or cattle grazing.

western United States↗
USGS2016

Benchmarking wide swath altimetry-based river discharge estimation algorithms for the Ganges river system

The objective of this study is to compare the effectiveness of three algorithms that estimate discharge from remotely sensed observables (river width, water surface height, and water surface slope) in anticipation of the forthcoming NASA/CNES Surface Water and Ocean Topography (SWOT) mission. SWOT promises to provide these measurements simultaneously, and the river discharge algorithms included here are designed to work with these data. Two algorithms were built around Manning's equation, the Metropolis Manning (MetroMan) method, and the Mean Flow and Geomorphology (MFG) method, and one approach uses hydraulic geometry to estimate discharge, the at-many-stations hydraulic geometry (AMHG) method. A well-calibrated and ground-truthed hydrodynamic model of the Ganges river system (HEC-RAS) was used as reference for three rivers from the Ganges River Delta: the main stem of Ganges, the Arial-Khan, and the Mohananda Rivers. The high seasonal variability of these rivers due to the Monsoon presented a unique opportunity to thoroughly assess the discharge algorithms in light of typical monsoon regime rivers. It was found that the MFG method provides the most accurate discharge estimations in most cases, with an average relative root-mean-squared error (RRMSE) across all three reaches of 35.5%. It is followed closely by the Metropolis Manning algorithm, with an average RRMSE of 51.5%. However, the MFG method's reliance on knowledge of prior river discharge limits its application on ungauged rivers. In terms of input data requirement at ungauged regions with no prior records, the Metropolis Manning algorithm provides a more practical alternative over a region that is lacking in historical observations as the algorithm requires less ancillary data. The AMHG algorithm, while requiring the least prior river data, provided the least accurate discharge measurements with an average wet and dry season RRMSE of 79.8% and 119.1%, respectively, across all rivers studied. This poor performance is directly traced to poor estimation of AMHG via a remotely sensed proxy, and results improve commensurate with MFG and MetroMan when prior AMHG information is given to the method. Therefore, we cannot recommend use of AMHG without inclusion of this prior information, at least for the studied rivers. The dry season discharge (within-bank flow) was captured well by all methods, while the wet season (floodplain flow) appeared more challenging. The picture that emerges from this study is that a multialgorithm approach may be appropriate during flood inundation periods in Ganges Delta.

Ganges River Delta↗