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At least 487 records · Page 27Linked to original sources

USGS2014

Linking channel hydrology with riparian wetland accretion in tidal rivers

The hydrologic processes by which tide affects river channel and riparian morphology within the tidal freshwater zone are poorly understood, yet are fundamental to predicting the fate of coastal rivers and wetlands as sea level rises. We investigated patterns of sediment accretion in riparian wetlands along the non-tidal through oligohaline portion of two coastal plain rivers in Maryland, U.S.A., and how flow velocity, water level, and suspended sediment concentration (SSC) in the channel may have contributed to those patterns. Sediment accretion was measured over a one year period using artificial marker horizons, channel hydrology was measured over a one month period using acoustic Doppler current profilers, and SSC was predicted from acoustic backscatter. Riparian sediment accretion was lowest at the non-tidal sites (mean and standard deviation = 8 ± 8 mm yr -1 ), highest at the upstream tidal freshwater forested wetlands (TFFW) (33 ± 28 mm yr -1 ), low at the midstream TFFW (12 ± 9 mm yr -1 ), and high at the oligohaline (fresh-to-brackish) marshes (19 ± 8 mm yr -1 ). Channel maximum flood and ebb velocity was 2-fold faster at the oligohaline than tidal freshwater zone on both tidal rivers, corresponding with the differences in in-channel SSC: the oligohaline zone's SSC was more than double the tidal freshwater zone's, and was greater than historical SSC at the non-tidal gages. The tidal wave characteristics differed between rivers, leading to significantly greater in-channel SSC during floodplain inundation in the weakly convergent than the strongly convergent tidal river. Overall sediment accretion was higher in the embayed river likely due to a single storm discharge and associated sedimentation.

Maryl↗

USGS2011

Columbus crater and other possible groundwater-fed paleolakes of Terra Sirenum, Mars

Columbus crater in the Terra Sirenum region of the Martian southern highlands contains light‐toned layered deposits with interbedded sulfate and phyllosilicate minerals, a rare occurrence on Mars. Here we investigate in detail the morphology, thermophysical properties, mineralogy, and stratigraphy of these deposits; explore their regional context; and interpret the crater's aqueous history. Hydrated mineral‐bearing deposits occupy a discrete ring around the walls of Columbus crater and are also exposed beneath younger materials, possibly lava flows, on its floor. Widespread minerals identified in the crater include gypsum, polyhydrated and monohydrated Mg/Fe‐sulfates, and kaolinite; localized deposits consistent with montmorillonite, Fe/Mg‐phyllosilicates, jarosite, alunite, and crystalline ferric oxide or hydroxide are also detected. Thermal emission spectra suggest abundances of these minerals in the tens of percent range. Other craters in northwest Terra Sirenum also contain layered deposits and Al/Fe/Mg‐phyllosilicates, but sulfates have so far been found only in Columbus and Cross craters. The region's intercrater plains contain scattered exposures of Al‐phyllosilicates and one isolated mound with opaline silica, in addition to more common Fe/Mg‐phyllosilicates with chlorides. A Late Noachian age is estimated for the aqueous deposits in Columbus, coinciding with a period of inferred groundwater upwelling and evaporation, which (according to model results reported here) could have formed evaporites in Columbus and other craters in Terra Sirenum. Hypotheses for the origin of these deposits include groundwater cementation of crater‐filling sediments and/or direct precipitation from subaerial springs or in a deep (∼900 m) paleolake. Especially under the deep lake scenario, which we prefer, chemical gradients in Columbus crater may have created a habitable environment at this location on early Mars.

Journal of Geophysical Research E: Planets↗

USGS2017

Decaying lava extrusion rate at El Reventador Volcano, Ecuador measured using high-resolution satellite radar

Lava extrusion at erupting volcanoes causes rapid changes in topography and morphology on the order of tens or even hundreds of meters. Satellite radar provides a method for measuring changes in topographic height over a given time period to an accuracy of meters, either by measuring the width of radar shadow cast by steep sided features, or by measuring the difference in radar phase between two sensors separated in space. We measure height changes, and hence estimate extruded lava volume flux, at El Reventador, Ecuador, between 2011 and 2016, using data from the RADARSAT-2 and TanDEM-X satellite missions. We find that 39 new lava flows were extruded between 9 February 2012 and 24 August 2016, with a cumulative volume of 44.8M m 3 dense rock equivalent and a gradually decreasing eruption rate. The average dense rock rate of lava extrusion during this time is 0.31 ± 0.02 m 3 s −1 , which is similar to the long-term average from 1972 to 2016. Apart from a volumetrically small dyke opening event between 9 March and 10 June 2012, lava extrusion at El Reventador is not accompanied by any significant magmatic ground deformation. We use a simple physics-based model to estimate that the volume of the magma reservoir under El Reventador is greater than 3 km 3 . Our lava extrusion data can be equally well fit by models representing a closed reservoir depressurising during the eruption with no magma recharge, or an open reservoir with a time-constant magma recharge rate of up to 0.35 ± 0.01 m 3 s −1 .

El Reventador Volcano↗

USGS2022

Diatom influence on the production characteristics of hydrate-bearing sediments: Examples from Ulleung Basin, offshore South Korea

The Ulleung Basin Gas Hydrate field expeditions in 2007 (UBGH1) and 2010 (UBGH2) sought to assess the Basin's gas hydrate resource potential. Coring operations in both expeditions recovered evidence of gas hydrate, primarily as fracture-filling (or vein type) morphologies in mainly silt-sized, fine-grained sediment, but also as pore-occupying hydrate in the coarser-grained layers of interbedded sand and fine-grained systems. A commonality across many of these occurrences is the presence of diatoms in the fine-grained sediment. Here we tested fine-grained sediment (median grain size <12.5 μm) associated with hydrate occurrences at four UBGH2 sites (UBGH2-2-2, UBGH2-3, UBGH2-6 and UBGH2-11) to investigate potential impacts of diatoms on efforts to extract methane from hydrate, or to tap hydrocarbon reservoirs beneath hydrate-bearing sediment. Two key considerations are: the extent to which diatoms control sediment mechanical properties, and the extent to which pore-water freshening, which occurs as gas hydrate breaks down during resource extraction, alters the diatom control on sediment mechanical properties. We conducted experiments to measure sediment index properties, sedimentation behavior and compressibility to address these considerations. We relied on scanning electron microscope (SEM) imagery and X-ray powder diffraction (XRD) to characterize the sediment mineralogy. Our high-level findings are that at the ∼20–45% (by volume) diatom concentrations observed at these UBGH2 sites, sediment compressibility increases with diatom content, but diatoms only appear to increase porosity and permeability at the highest diatom concentration (∼45%). Our measurements suggest in situ compression indices of 0.35–0.55 and permeabilities on the order of 0.01milliDarcies (1 × 10 −17 m 2 ) can be anticipated at these sites. Importantly, these properties are not expected to vary significantly upon pore water freshening that accompanies gas hydrate dissociation during production.

East Sea, Ulleung Basin↗

USGS2021

The limitations of external measurements for aging small mammals: The cautionary example of the Lesser Treeshrew (Scandentia: Tupaiidae: Tupaia minor Günther, 1876)

Age is a basic demographic characteristic vital to studies of mammalian social organization, population dynamics, and behavior. To eliminate potentially confounding ontogenetic variation, morphological comparisons among populations of mammals typically are limited to mature individuals (i.e., those assumed to have ceased most somatic growth). In our morphometric studies of treeshrews (Scandentia), adult individuals are defined by the presence of fully erupted permanent dentition, a common criterion in specimen-based mammalogy. In a number of cases, however, we have had poorly sampled populations of interest in which there were potentially useful specimens that could not be included in samples because they lacked associated skulls. Such specimens typically are associated with external body and weight measurements recorded by the original collectors, and we sought to determine whether these data could be used successfully as a proxy for age or at least to establish maturity. We analyzed four traditional external dimensions (head-and-body length, tail length, hind foot length, and ear length) and weight associated with 103 specimens from two allopatric populations of the Lesser Treeshrew ( Tupaia minor Günther, 1876) from Peninsular Malaysia and from Borneo, which we treated as separate samples (populations). Individuals were assigned to one of eight age categories based on dental eruption stage, and measurements were compared among groups. In general, mean sizes of infants and subadults were smaller than those of adults, but the majority of subadults fell within the range of variation of adults. The large overlap among infants, subadults, and adults in external measurements and weight indicates that such measures are poor proxies for age in this species, probably for treeshrews in general, and possibly for other small mammals. This has significant implications for any investigation wherein relative age of individuals in a given population is an important consideration.

Journal of Mammalogy↗

USGS2026

Lunar-VISE landing site selection and characterization at Mons Gruithuisen Gamma

The Lunar Vulkan Imaging and Spectroscopy Explorer (Lunar-VISE) was selected for a Commercial Lunar Payload Services (CLPS) delivery to the Gruithuisen domes region of the Moon as part of NASA’s Payloads and Research Investigation on the Surface of the Moon (PRISM) program. The Gruithuisen domes are chemically and morphologically distinct from their surroundings with a thorium-rich, silicic composition. The Lunar-VISE instrument payload is designed to investigate the compositional and thermophysical properties of dome materials in order to understand how late-stage silicic volcanism occurred on the Moon. Selection of a landing site required balancing science and exploration goals with the safety requirements for landing and rover trafficability. Science required access to boulders, potential exposures of bedrock, and if possible, rover access to the dome edge to enable observations of the surrounding maria. Safety considerations included landing hazards, maintenance of line-of-sight communications between the lander and rover, and any early morning or late afternoon shadows that would limit the mission duration. After consideration of several candidate landing sites, a 100-meter diameter landing ellipse centered on 36.45715° N, 319.20398° E, was selected near the edge of a topographic step and blocky ejecta crater (recently named Mareta) near the summit of Mons Gruithuisen Gamma. This location enables access to a field of boulders excavated by a relatively fresh impact providing a diversity of boulders for investigations, as well as views to the surrounding mare and Mons Gruithuisen Delta dome off of the dome edge via only a short rover traverse outside the landing ellipse (traverse < 100 m) while meeting safety requirements in accord with the CLPS risk posture.

Planetary Science Journal↗

USGS2018

The tectonically controlled San Gabriel Channel–Lobe Transition Zone, Catalina Basin, Southern California Borderland

High-resolution geophysical data across the Catalina Basin, offshore southern California, USA, reveal a complex channel–lobe transition zone (CLTZ) and provide an opportunity to characterize an entire seafloor CLTZ in a tectonically active and confined-basin setting. The seafloor morphology, distribution of depositional and erosional features, and location of depocenters in the CLTZ are controlled by shifting confinement and seafloor gradient related to inherited basement structures, active faults, and basin margins. Below a Holocene hemipelagic drape, the Catalina Basin is dominated by CLTZ and lobe sedimentation from the San Gabriel Channel, with lesser accumulations from local sediment sources limited to basin margins. The San Gabriel Channel is structurally confined as it enters the Catalina Basin and appears unable to avulse; it continues into the basin as a channel that rapidly widens, decreases in relief, and becomes scoured at its margins. A CLTZ is imaged between the confined San Gabriel channel and its terminal lobes deposited > 50 km into the basin. Narrow, apparently disconnected channels with knickpoints occur throughout the proximal and mid-CLTZ and are concentrated near basement highs and basin-bounding Quaternary-active dextral strike-slip faults. A field of small-scale erosional crescent-shaped scours (∼ 100 m length, ∼ 200 m width, up to ∼ 10 m relief across ∼ 30 km 2 region) occurs above a partially buried basement high that creates perturbations in seafloor gradient. Likewise, above a buried basement structure that locally increases seafloor gradient (up to 0.4°), the distal CLTZ may contain sediment waves (∼ 2–4 m wave height and ∼ 200–300 m wavelength) that are smaller than many other CLTZ examples. This study of the San Gabriel CLTZ in Catalina Basin provides high-resolution geophysical data coverage of a complete CLTZ and illustrates a tectonically controlled end-member CLTZ from the modern seafloor.

Journal of Sedimentary Research↗

USGS2005

Biology and conservation of Xantus's Murrelet: Discovery, taxonomy and distribution

The biology of Xantus's Murrelets Synthliboramphus hypoleucus is similar in many respects to better-studied Ancient Murrelets S. antiquus, especially regarding morphology and the species' precocial mode of post-hatching development. It nests mainly in rock crevices but also under shrubs on islands in southern California, United States, and northwestern Baja California, Mexico (27 o N to 34 o N). The species was discovered in 1859 by Janos Xantus. Two subspecies ( S. h. hypoleucus and S. h. scrippsi ) are recognized that show limited evidence of interbreeding. At sea, closely related Craveri's Murrelets S. craveri co-occur with Xantus's Murrelets off California and western Baja California during half the year, but the former species has a discrete breeding range in the Gulf of California, Mexico. Breeding was documented at 13 island groups between 1863 and 1976. Post-breeding dispersal as far north as central British Columbia, Canada (c. 52 o N) was observed in the 1940s to 1960s. A few Xantus's Murrelets disperse south of breeding colonies to Magdalena Bay, Baja California (c. 24 o N). The southernmost record is the type specimen collected by Xantus near Cabo San Lucas, Baja California (c. 23 o N). Chief threats to this species include introduced mammalian predators on breeding islands, heightened predation by natural predators in human-modified island habitats, and oil pollution. In January 2005, a Pacific Seabird Group special symposium, "Biology and conservation of the Xantus's Murrelet," highlighted conservation concerns and promoted publication of recent studies of this little-known alcid, with nine symposium papers published in this issue of Marine Ornithology. Much of what we know about Xantus's Murrelets has been learned in recent years, and many aspects of biology remain to be described.

Marine Ornithology: Journal of Seabird Research an↗

USGS1995

Mudflow generated by retrogressive slope failure, Santa Barbara Basin, California continental borderland

The morphology and internal geometry of a mudflow deposit on the mainland slope of the Santa Barbara Basin are defined using high-resolution seismic-reflection data in combination with core samples. Sediment failure occurred on a 4 degrees slope in the uppermost part of late Quaternary well-bedded slope deposits. The failure zone extends from water depths of 374-510 m near the base of slope, occupies an area of 4 km 2 , and involved the translation of 0.01-0.02 km 3 of sediment. Major geomorphic features of the mudflow deposit include a headscarp 6-8 m high, a scar 50-700 m wide, and a main body 1 km long and 12 m thick. The hummocky surface of the mudflow deposits, their chaotic internal structure, and the bulbous toe tapering upslope to a thin tail are consistent with mass flow involving extensive internal deformation. Sediment failed in stages, ending with upslope retrogressive retreat of the headwall along the east side of the failure zone. Known sedimentation rates of 0.8-1.4 m/k.y., as well as the presence of a thin (0.15-0.5 m thick) sediment cap resting atop the scar surface, indicate that the failure probably occurred within the past few centuries. A geotechnical analysis incorporating the results of both static and dynamic triaxial strength tests shows that the failure was probably caused by a strong (M nearly equal 7.5) nearby earthquake. The weakened sediment that remained after earthquake shaking continued to flow down the gentle basin slope under the stresses generated by gravity alone. The analysis also shows that much of the slope sediment is marginally stable and that additional mudflows will probably occur during future strong seismic shaking.

California↗

USGS2005

Morphology and aging precision of statoliths from larvae of Columbia river basin lampreys

The general morphology and precision associated with age determination of statoliths from larval Pacific lampreys Lampetra tridentata and western brook lampreys L. richardsoni found within the Columbia River basin were examined. Significant positive correlations were observed between the size of left and right statoliths from individuals. Principal components analysis indicated an allometric relationship between lamprey length and statolith size as well as a potential species grouping based on these measurements. Discriminant analysis was able to correctly classify more than 94% of Pacific lampreys and 92% of western brook lampreys based on lamprey length and statolith size, and Pacific lamprey statoliths tended to be larger than western brook lamprey statoliths for lampreys of a given size. Reader bias in age estimates of statoliths was greater for older lampreys. Multiple independent age readings of both statoliths from individual lampreys indicated that the overall average percent error was 16.7% for Pacific lampreys and 33.0% for western brook lampreys. Within-individual average percent error ranged from 5.1% to 20.1% among species and readers. Within-reader average percent error ranged from 6.4% to 17.8% among species and readers. The average percent error observed in this study was greater than that observed in studies of other species of lampreys; however, statoliths that were ambiguous or difficult to read were not excluded from this study. In general, the modal separation of age-groups observed in length-frequency distributions for lampreys is poor, as seen in this study; therefore, statolith-based ages may verify or provide better estimates of population age structure. These data demonstrate that estimates of precision are necessary before management actions founded on statolith-based age structure determination are implemented. ?? Copyright by the American Fisheries Society 2005.

Oregon↗

USGS2012

Galileo observations of Post-Imbrium lunar craters during the first Earth-Moon flyby

Copernican‐age craters are among the most conspicuous features seen on the far side and western limb of the Moon in the Galileo multispectral images acquired in December 1990. Among the new morphologic observations of far‐side craters are bright rays, continuous ejecta deposits, and dark rings associated with probable impact‐melt veneers. These observations suggest that the mapped age assignments of several large far‐side craters (Ohm, Robertson, and possibly Lowell and Lenz) need revision. New crater size‐frequency measurements on Lunar Orbiter images suggest the following age reassignments: Hausen (170 km diameter), Pythagoras (120 km), and Bullialdus (61 km) from Eratosthenian to Upper Imbrian, and Carpenter (60 km) and Harpalus (39 km) from Copernican to Eratosthenian. Colors and albedos of craters (away from impact‐melt veneers) are correlated with their geologic emplacement ages as determined from counts of superposed craters; these age‐color relations are used to estimate the emplacement age (time since impact event) for other Copernican‐age craters. These age‐color relations indicate a probable Copernican age for 27 far‐side or western limb craters larger than 10 km diameter that were not previously mapped as Copernican. The apparent deficiency of Copernican craters on the far side compared with the near side in published geologic maps is not present in our data. Age‐color trends differ between mare and highland regions and between the interiors and continuous ejecta of the craters. Similar trends are established for color and albedo versus soil‐maturity indices for the returned lunar samples, with distinct trends for mare and highland soils. However, the mare versus highland offsets are reversed in the two comparisons. These relations can be explained by variations in regolith thicknesses and rates of mixing with relatively fresh, crystalline ejecta. Therefore, the soil‐maturity trends represent longer geologic time periods in regions with thinner regoliths, such as the maria.

Journal of Geophysical Research E: Planets↗

USGS1996

A sexing technique for California Gulls breeding at Bamforth Lake, Wyoming (Una tecnica para determinar sexos en larus californicus reproduciendose en el Lago Bamforth, Wyoming)

We used morphological characteristics to determine the sex of California Gulls ( Larus californicus ) nesting at Bamforth Lake, Wyoming. Using univariate and multivariate techniques, we evaluated sexual dimorphism in five external measurements taken from 614 California Gulls: bill length, bill depth, head-bill length, tarsus length, and body mass. Males were significantly larger than females for all measurements. The greatest difference between the sexes occurred in head-bill length, bill depth, and tarsus length. A multiple logistic regression model was used to assign individuals to a sex class. Sex could be accurately determined using only three variables: head-bill length, bill depth, and tarsus length. Using the logistic function generated from our initial sample, we obtained correct classification of sex in 99.2% and 97.0% of the gulls in two additional validation samples. Utilizamos las características morfológicas para determinar el sexo en una población de Larus californicus anidando en el Lago Bamforth de Wyoming. Evalumos el dimorfismo sexual en la especie utilizando técnicas de univarianza y multivarianza en cinco medidas externas (largo del pico, profundidad del pico, largo de cabeza y pico, largo del tarso y masa corporal) tomadas en 614 aves. Los machos fueron significativamente más grandes que las hembras en todas las medidas. La mayor diferencia entre los sexos se encontró en largo de cabeza y pico, profundidad del pico y largo del tarso. Se usó un modelo de regresión logística multiple para asignar individuos a un grupo genérico. El sexo se podía determinar con precisión utilizando solo tres variables: largo de cabeza y pico, profundidad del pico y largo del tarso. Usando la función logística generada por nuestra muestra inicial, obtuvimos la clasificación al género correcto en 99.2% y 97.0% de las aves en dos muestreos adicionales de validación.

Wyoming↗

USGS2020

A test of the Niche Variation Hypothesis in a ruminant herbivore

Despite the shared prediction that the width of a population's dietary niche expands as food becomes limiting, the Niche Variation Hypothesis (NVH) and Optimal Foraging Theory (OFT) offer contrasting views about how individuals alter diet selection when food is limited. Classical OFT predicts that dietary preferences do not change as food becomes limiting, so individuals expand their diets as they compensate for a lack of preferred foods. In contrast, the NVH predicts that among-individual variation in cognition, physiology or morphology create functional trade-offs in foraging efficiency, thereby causing individuals to specialize on different subsets of food as food becomes limiting. To evaluate (a) the predictions of the NVH and OFT and (b) evidence for physiological and cognitive-based functional trade-offs, we used DNA microsatellites and metabarcoding to quantify the diet, microbiome and genetic relatedness (a proxy for social learning) of 218 moose Alces alces across six populations that varied in their degree of food limitation. Consistent with both the NVH and OFT, dietary niche breadth increased with food limitation. Increased diet breadth of individuals—rather than increased diet specialization—was strongly correlated with both food limitation and dietary niche breadth of populations, indicating that moose foraged in accordance with OFT. Diets were not constrained by inheritance of the microbiome or inheritance of diet selection, offering support for the little-tested hypothesis that functional trade-offs in food use (or lack thereof) determine whether populations adhere to the predictions of the NVH or OFT. Our results indicate that both the absence of strong functional trade-offs and the digestive physiology of ruminants provide contexts under which populations should forage in accordance with OFT rather than the NVH. Also, because dietary niche width increased with increased food limitation, OFT and the NVH provide theoretical support for the notion that plant–herbivore interaction networks are plastic rather than static, which has important implications for understanding interspecific niche partitioning. Lastly, because population-level dietary niche breadth and calf recruitment are correlated, and because calf recruitment can be a proxy for food limitation, our work demonstrates how diet data can be employed to understand a populations' proximity to carrying capacity.

Colorado, Utah, Wyoming↗

USGS2013

Photogrammetric monitoring of lava dome growth during the 2009 eruption of Redoubt Volcano

The 2009 eruption of Redoubt Volcano, Alaska, began with a phreatic explosion on 15 March followed by a series of at least 19 explosive events and growth and destruction of at least two, and likely three, lava domes between 22 March and 4 April. On 4 April explosive activity gave way to continuous lava effusion within the summit crater. We present an analysis of post-4 April lava dome growth using an oblique photogrammetry approach that provides a safe, rapid, and accurate means of measuring dome growth. Photogrammetric analyses of oblique digital images acquired during helicopter observation flights and fixed-wing volcanic gas surveys produced a series of digital elevation models (DEMs) of the lava dome from 16 April to 23 September. The DEMs were used to calculate estimates of volume and time-averaged extrusion rates and to quantify morphological changes during dome growth. Effusion rates ranged from a maximum of 35 m 3 s − 1 during the initial two weeks to a low of 2.2 m 3 s − 1 in early summer 2009. The average effusion rate from April to July was 9.5 m 3 s − 1 . Early, rapid dome growth was characterized by extrusion of blocky lava that spread laterally within the summit crater. In mid-to-late April the volume of the dome had reached 36 × 10 6 m 3 , roughly half of the total volume, and dome growth within the summit crater began to be limited by confining crater walls to the south, east, and west. Once the dome reached the steep, north-sloping gorge that breaches the crater, growth decreased to the south, but the dome continued to inflate and extend northward down the gorge. Effusion slowed during 16 April–1 May, but in early May the rate increased again. This rate increase was accompanied by a transition to exogenous dome growth. From mid-May to July the effusion rate consistently declined. The decrease is consistent with observations of reduced seismicity, gas emission, and thermal anomalies, as well as declining rates of geodetic deflation or inflation. These trends suggest dome growth ceased by July 2009. The volume of the dome at the end of the 2009 eruption was about 72 × 10 6 m 3 , more than twice the estimated volume of the largest dome extruded during the 1989–1990 eruption. In total, the 2009 dome extends over 400 m down the glacial gorge on the north end of the crater, with a total length of 1 km, width of 500 m and an average thickness of 200 m.

Alaska↗

USGS2010

Geographic variation in the plumage coloration of willow flycatchers Empidonax traillii

The ability to identify distinct taxonomic groups of birds (species, subspecies, geographic races) can advance ecological research efforts by determining connectivity between the non-breeding and breeding grounds for migrant species, identifying the origin of migrants, and helping to refine boundaries between subspecies or geographic races. Multiple methods are available to identify taxonomic groups (e.g., morphology, genetics), and one that has played an important role for avian taxonomists over the years is plumage coloration. With the advent of electronic devices that can quickly and accurately quantify plumage coloration, the potential of using coloration as an identifier for distinct taxonomic groups, even when differences are subtle, becomes possible. In this study, we evaluated the degree to which plumage coloration differs among the four subspecies of the willow flycatcher Empidonax traillii, evaluated sources of variation, and considered the utility of plumage coloration to assign subspecies membership for individuals of unknown origin. We used a colorimeter to measure plumage coloration of 374 adult willow flycatchers from 29 locations across their breeding range in 2004 and 2005. We found strong statistical differences among the mean plumage coloration values of the four subspecies; however, while individuals tended to group around their respective subspecies' mean color value, the dispersion of individuals around such means overlapped. Mean color values for each breeding site of the three western subspecies clustered together, but the eastern subspecies' color values were dispersed among the other subspecies, rather than distinctly clustered. Additionally, sites along boundaries showed evidence of intergradation and intermediate coloration patterns. We evaluated the predictive power of colorimeter measurements on flycatchers by constructing a canonical discriminant model to predict subspecies origin of migrants passing through the southwestern U.S. Considering only western subspecies, we found that individuals can be assigned with reasonable certainty. Applying the model to migrants sampled along the Colorado River in Mexico and the U.S. suggests different migration patterns for the three western subspecies. We believe that the use of plumage coloration, as measured by electronic devices, can provide a powerful tool to look at ecological questions in a wide range of avian species.

Journal of Avian Biology↗

USGS2014

Gross and microscopic pathology of lesions in Pocillopora spp. from the subtropical eastern Pacific

Coral reefs are threatened by a variety of factors including diseases that have caused significant damage in some regions such as in the Caribbean. At present, no data are available on coral diseases in the Mexican Pacific where Pocillopora spp. is a dominant component of coral communities. Here, we describe gross and microscopic morphology of lesions found in pocilloporids at four sites in the Mexican Pacific. Corals were identified and their lesions photographed and quantified in the field. Tissue samples were collected from healthy and affected colonies for histopathology. We recorded seven species of pocilloporids at the study sites with Isla Isabel being the location with the highest coral diversity ( H ′ = 1.27). Lesions were present in 42% of the colonies and included discoloration (32%), predation-induced tissue loss (30%), unexplained tissue loss (3%) and overgrowth by sponges or algae (35%). The most affected species, P . damicornis (50%), was also one of the most common in the region. No species was more prone to a particular lesion, but there was a significant association between location and the presence of lesions. Northern Islas Marietas (61%) and Isla Isabel (41%) had the highest prevalence of lesions, followed by Manzanillo (37%) and Bahías de Huatulco (23%). Histological changes included atrophy of the surface body wall with depletion of zooxanthellae (91%) in corals with discoloration (bleaching). Ablation of tissue from mesoglea (18%) was also observed. Colonies with unexplained tissue loss showed atrophy and thinning of the epidermis (89%), characterized by cuboidal instead of pseudocolumnar cells normally found in healthy pseudocolumnar ciliated epithelium. Bacterial aggregates between the mesoglea and gastrodermis (11%) were very conspicuous in healthy and diseased corals. Lesions produced by fish bites and gastropods were associated with tissue atrophy (40%) and, in some cases, algal overgrowth near the lesion (20%). No infectious agents associated with cell pathology were detected microscopically. Bleaching and overgrowth by algae and sponges, as well as unexplained tissue loss, are common in Pocillopora . These lesions and anatomical changes warrant further study since their incidence is potentially indicative of reef degradation.

Mexican Pacific↗

USGS1954

Studies on avian malaria in vectors and hosts of encephalitis in Kern County, California. I. Infections in avian hosts

An epizoological study of Plasmodium infections in wild birds of Kern County, California, in the years 1946 through 1951 greatly extended knowledge of the occurrence of these parasites and their behavior in nature. Examination of 10,459 blood smears from 8,674 birds representing 73 species resulted in the observation of Plasmodium spp. in 1,094 smears representing 888 individual birds of 27 species. Seven species of Plasmodium were found: relictum, elongatum, hexamerium, nucleophilum, polare, rouxi and vaughani. Plasmodium relictum was by far the most frequently observed species, occurring in at least 79 per cent of the infected birds. Twelve new host species are recorded for this parasite. Sufficient morphological variation was observed to indicate that two strains of this species probably exist in nature. Numerous new host records were made of plasmodia with elongate gametocytes. The finding of parasites believed to be P. rouxi in two new host species represents the first record of the occurrence of this Plasmodium outside of Algeria. Multiple smears were obtained from a number of individual birds over varying time periods. Evidence of prolonged parasitemia was unusual, but some individuals had parasitemia on consecutive months and even for three successive years. In most individuals, parasitemias were of short duration. The inoculation of blood from wild birds into canaries led to the demonstration of many infections not observed on blood smear examination of donors. Use of these two complementary techniques led to more complete host records and a truer picture of the prevalence of infection. Three age classes of birds were studied--nestling, immature (less than 1 year of age) and adult. Parasites were observed in all three groups but infections in the younger individuals were most susceptible to interpretation. As to time of onset, numerous records were obtained of infection in nestling birds. Prevalence rates in immature birds after a single season's exposure ranged from 64 to 100 per cent in the house finch and 17 to 68 per cent in the English sparrow in different areas and years. Marked differences were found in the prevalence rates in different summer months, years and areas. It is believed these differences reflect variation in a number of environmental factors. This study indicates the extensive distribution of Plasmodium infection in a wide range of wild avian hosts. The observations are of possible importance in epidemiological studies of other arthropod-borne diseases such as the viral encephalitides for which these birds serve as hosts.

California↗

USGS2018

Rapid, remote assessment of Hurricane Matthew impacts using four-dimensional structure-from-motion photogrammetry

Timely assessment of coastal landforms and structures after storms is important for evaluating storm impacts, aiding emergency response and restoration, and initializing and assessing morphological models. Four-dimensional multiview photogrammetry, also known as structure from motion (4D SfM), provides a method for generating three-dimensional reconstructions of landscapes at two times (before and after events) using only photos and existing information for ground control points. Here, these techniques were applied using National Oceanic and Atmospheric Administration (NOAA)-obtained oblique aerial photos taken before (2015) and immediately after Hurricane Matthew (2016) to assess coastal changes near Matanzas, Florida. This work demonstrated that 3D digital elevation models can be constructed within 48 hours of postevent photo collection without on-site ground control measurements. One advantage of timely SfM elevation-change assessments is that they avoid confusion of storm impacts with changes that occur after the event but before LIDAR surveys can be performed. The accuracy and precision of the 4D SfM maps were assessed a posteriori using the first-available LIDAR data, which were collected more than a month after the hurricane, and 11 independent ground-truth survey points measured a week after the hurricane. Horizontal coordinates of the 4D SfM reconstruction were biased by an average of 0.79 m (0.83 m root-mean-square difference; RMSD) compared with the ground-truth points, but vertical elevations were more accurate. They were biased from the LIDAR by −0.09 to −0.25 m, with ∼0.20 m RMSD from both the LIDAR data and five ground-truth points with good vertical positioning and 0.25 m RMSD from LIDAR data along a 60-m stretch of pavement. This level of precision was sufficient to quantify geomorphological change that was often in excess of 1 m. The methodology is conducive for rapid assessment of changes along short stretches (tens of kilometers) of coast with modest resources and could be scaled up for larger regions.

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