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At least 487 records · Page 27Linked to original sources

USGS2021

SFRmaker and Linesink-Maker: Rapid construction of streamflow routing networks from hydrography data

Groundwater models have evolved to encompass more aspects of the water cycle, but the incorporation of realistic boundary conditions representing surface water remains time-consuming and error-prone. We present two Python packages that robustly automate this process using readily available hydrography data as the primary input. SFRmaker creates input for the MODFLOW SFR package, while Linesink-maker creates linesink string input for the GFLOW analytic element program. These programs can reduce weeks or even months of manual effort to a few minutes of execution time, and carry the added advantages of reduced potential for error, improved reproducibility and facilitation of step-wise modeling through reduced dependency on a particular conceptual model or discretization. Two real-world examples at the county to multi-state scales are presented.

Groundwater↗

USGS2004

Relevance of ammonium oxidation within biological soil crust communities

Thin, vertically structured topsoil communities that become ecologically important in arid regions (biological soil crusts or BSCs) are responsible for much of the nitrogen inputs into pristine arid lands. We studied N2 fixation and ammonium oxidation (AO) at subcentimetre resolution within BSCs from the Colorado Plateau. Pools of dissolved porewater nitrate/ nitrite, ammonium and organic nitrogen in wetted BSCs were high in comparison with those typical of aridosoils. They remained stable during incubations, indicating that input and output processes were of similar magnitude. Areal N2 fixation rates (6.5-48 ??mol C2H2 m-2 h -1) were high, the vertical distribution of N2 fixation peaking close to the surface if populations of heterocystous cyanobacteria were present, but in the subsurface if they were absent. Areal AO rates (19-46 ??mol N m-2 h-1) were commensurate with N2 fixation inputs. When considering oxygen availability, AO activity invariably peaked 2-3 mm deep and was limited by oxygen (not ammonium) supply. Most probable number (MPN)-enumerated ammonia-oxidizing bacteria (6.7-7.9 ?? 103 cells g-1 on average) clearly peaked at 2-3 mm depth. Thus, AO (hence nitrification) is a spatially restricted but important process in the nitrogen cycling of BSC, turning much of the biologically fixed nitrogen into oxidized forms, the fate of which remains to be determined.

Environmental Microbiology↗

USGS2005

A map overlay error model based on boundary geometry

An error model for quantifying the magnitudes and variability of errors generated in the areas of polygons during spatial overlay of vector geographic information system layers is presented. Numerical simulation of polygon boundary displacements was used to propagate coordinate errors to spatial overlays. The model departs from most previous error models in that it incorporates spatial dependence of coordinate errors at the scale of the boundary segment. It can be readily adapted to match the scale of error-boundary interactions responsible for error generation on a given overlay. The area of error generated by overlay depends on the sinuosity of polygon boundaries, as well as the magnitude of the coordinate errors on the input layers. Asymmetry in boundary shape has relatively little effect on error generation. Overlay errors are affected by real differences in boundary positions on the input layers, as well as errors in the boundary positions. Real differences between input layers tend to compensate for much of the error generated by coordinate errors. Thus, the area of change measured on an overlay layer produced by the XOR overlay operation will be more accurate if the area of real change depicted on the overlay is large. The model presented here considers these interactions, making it especially useful for estimating errors studies of landscape change over time. ?? 2005 The Ohio State University.

Geographical Analysis↗

USGS2012

Importance of terrestrial arthropods as subsidies in lowland Neotropical rain forest stream ecosystems

The importance of terrestrial arthropods has been documented in temperate stream ecosystems, but little is known about the magnitude of these inputs in tropical streams. Terrestrial arthropods falling from the canopy of tropical forests may be an important subsidy to tropical stream food webs and could also represent an important flux of nitrogen (N) and phosphorus (P) in nutrient-poor headwater streams. We quantified input rates of terrestrial insects in eight streams draining lowland tropical wet forest in Costa Rica. In two focal headwater streams, we also measured capture efficiency by the fish assemblage and quantified terrestrially derived N- and P-excretion relative to stream nutrient uptake rates. Average input rates of terrestrial insects ranged from 5 to 41 mg dry mass/m 2 /d, exceeding previous measurements of aquatic invertebrate secondary production in these study streams, and were relatively consistent year-round, in contrast to values reported in temperate streams. Terrestrial insects accounted for half of the diet of the dominant fish species, Priapicthys annectens. Although terrestrially derived fish excretion was found to be a small flux relative to measured nutrient uptake rates in the focal streams, the efficient capture and processing of terrestrial arthropods by fish made these nutrients available to the local stream ecosystem. This aquatic-terrestrial linkage is likely being decoupled by deforestation in many tropical regions, with largely unknown but potentially important ecological consequences.

Biotropica↗

USGS2007

Latin hypercube approach to estimate uncertainty in ground water vulnerability

A methodology is proposed to quantify prediction uncertainty associated with ground water vulnerability models that were developed through an approach that coupled multivariate logistic regression with a geographic information system (GIS). This method uses Latin hypercube sampling (LHS) to illustrate the propagation of input error and estimate uncertainty associated with the logistic regression predictions of ground water vulnerability. Central to the proposed method is the assumption that prediction uncertainty in ground water vulnerability models is a function of input error propagation from uncertainty in the estimated logistic regression model coefficients (model error) and the values of explanatory variables represented in the GIS (data error). Input probability distributions that represent both model and data error sources of uncertainty were simultaneously sampled using a Latin hypercube approach with logistic regression calculations of probability of elevated nonpoint source contaminants in ground water. The resulting probability distribution represents the prediction intervals and associated uncertainty of the ground water vulnerability predictions. The method is illustrated through a ground water vulnerability assessment of the High Plains regional aquifer. Results of the LHS simulations reveal significant prediction uncertainties that vary spatially across the regional aquifer. Additionally, the proposed method enables a spatial deconstruction of the prediction uncertainty that can lead to improved prediction of ground water vulnerability. ?? 2007 National Ground Water Association.

Ground Water↗

USGS2007

Nutrients discharged to the Mississippi River from eastern Iowa watersheds, 1996-1997

The introduction of nutrients from chemical fertilizer, animal manure, wastewater, and atmospheric deposition to the eastern Iowa environment creates a large potential for nutrient transport in watersheds. Agriculture constitutes 93 percent of all land use in eastern Iowa. As part of the U.S. Geological Survey National Water Quality Assessment Program, water samples were collected (typically monthly) from six small and six large watersheds in eastern Iowa between March 1996 and September 1997. A Geographic Information System (GIS) was used to determine land use and quantify inputs of nitrogen and phosphorus within the study area. Streamliow from the watersheds is to the Mississippi River. Chemical fertilizer and animal manure account for 92 percent of the estimated total nitrogen and 99.9 percent of the estimated total phosphorus input in the study area. Total nitrogen and total phosphorus loads for 1996 were estimated for nine of the 12 rivers and creeks using a minimum variance unbiased estimator model. A seasonal pattern of concentrations and loads was observed. The greatest concentrations and loads occur in the late spring to early summer in conjunction with row-crop fertilizer applications and spring nmoff and again in the late fall to early winter as vegetation goes into dormancy and additional fertilizer is applied to row-crop fields. The three largest rivers in eastern Iowa transported an estimated total of 79,000 metric tons of total nitrogen and 6,800 metric tons of total phosphorus to the Mississippi River in 1996. The estimated mass of total nitrogen and total phosphorus transported to the Mississippi River represents about 19 percent of all estimated nitrogen and 9 percent of all estimated phosphorus input to the study area.

Iowa↗

USGS2010

Recovery of sediment characteristics in moraine, headwater streams of northern Minnesota after forest harvest

We investigated the recovery of sediment characteristics in four moraine, headwater streams in north-central Minnesota after forest harvest. We examined changes in fine sediment levels from 1997 (preharvest) to 2007 (10 years postharvest) at study plots with upland clear felling and riparian thinning, using canopy cover, proportion of unstable banks, surficial fine substrates, residual pool depth, and streambed depth of refusal as response variables. Basin-scale year effects were significant ( p < 0.001) for all responses when evaluated by repeated-measures ANOVAs. Throughout the study area, unstable banks increased for several years postharvest, coinciding with an increase in windthrow and fine sediment. Increased unstable banks may have been caused by forest harvest equipment, increased windthrow and exposure of rootwads, or increased discharge and bank scour. Fine sediment in the channels did not recover by summer 2007, even though canopy cover and unstable banks had returned to 1997 levels. After several storm events in fall 2007, 10 years after the initial sediment input, fine sediment was flushed from the channels and returned to 1997 levels. Although our study design did not discern the source of the initial sediment inputs (e.g., forest harvest, road crossings, other natural causes), we have shown that moraine, headwater streams can require an extended period (up to 10 years) and enabling event (e.g., high storm flows) to recover from large inputs of fine sediment.

Minnesota↗

USGS2011

Nutrient sources and transport in the Missouri River Basin, with emphasis on the effects of irrigation and reservoirs

SPAtially Referenced Regressions On Watershed attributes (SPARROW) models were used to relate instream nutrient loads to sources and factors influencing the transport of nutrients in the Missouri River Basin. Agricultural inputs from fertilizer and manure were the largest nutrient sources throughout a large part of the basin, although atmospheric and urban inputs were important sources in some areas. Sediment mobilized from stream channels was a source of phosphorus in medium and larger streams. Irrigation on agricultural land was estimated to decrease the nitrogen load reaching the Mississippi River by as much as 17%, likely as a result of increased anoxia and denitrification in the soil zone. Approximately 16% of the nitrogen load and 33% of the phosphorus load that would have otherwise reached the Mississippi River was retained in reservoirs and lakes throughout the basin. Nearly half of the total attenuation occurred in the eight largest water bodies. Unlike the other major tributary basins, nearly the entire instream nutrient load leaving the outlet of the Platte and Kansas River subbasins reached the Mississippi River. Most of the larger reservoirs and lakes in the Platte River subbasin are upstream of the major sources, whereas in the Kansas River subbasin, most of the source inputs are in the southeast part of the subbasin where characteristics of the area and proximity to the Missouri River facilitate delivery of nutrients to the Mississippi River.

Missouri River Basin↗

USGS2025

Extreme plate boundary localization promotes shallow earthquake slip at the Japan Trench

The 2011 Mw9.1 Tohoku-oki earthquake is exceptional among great earthquakes for having peak slip of ~50-70 m on the shallowest portion of the plate boundary megathrust. International Ocean Discovery Program Expedition 405 drilled multiple holes through the megathrust in the large slip region and at a Pacific Plate input site. The megathrust preferentially develops at the top or base of the pelagic clay in the input section where pronounced contrasts in physical properties are present. This results in a narrow, weak fault located at a major mechanical contact between frontal prism mud and subducted clay. Localization imposed by the input section enhances the tendency for shallow seismic slip, showing the Japan Trench may be more susceptible to ruptures with large shallow slip than margins without weak clays.

Japan Trench↗

USGS2006

Examination of the watershed-wide distribution of Escherichia coli along southern Lake Michigan: An integrated approach

Recent research has highlighted the occurrence of Escherichia coli in natural habitats not directly influenced by sewage inputs. Most studies on E. coli in recreational water typically focus on discernible sources (e.g., effluent discharge and runoff) and fall short of integrating riparian, nearshore, onshore, and outfall sources. An integrated “beachshed” approach that links E. coli inputs and interactions would be helpful to understand the difference between background loading and sewage pollution; to develop more accurate predictive models; and to understand the differences between potential, net, and apparent culturable E. coli . The objective of this study was to examine the interrelatedness of E. coli occurrence from various coastal watershed components along southern Lake Michigan. The study shows that once established in forest soil, E. coli can persist throughout the year, potentially acting as a continuous non-point source of E. coli to nearby streams. Year-round background stream loading of E. coli can influence beach water quality. E. coli is present in highly variable counts in beach sand to depths just below the water table and to distances at least 5 m inland from the shore, providing a large potential area of input to beach water. In summary, E. coli in the fluvial-lacustrine system may be stored in forest soils, sediments surrounding springs, bank seeps, stream margins and pools, foreshore sand, and surface groundwater. While rainfall events may increase E. coli counts in the foreshore sand and lake water, concentrations quickly decline to prerain concentrations. Onshore winds cause an increase in E. coli in shallow nearshore water, likely resulting from resuspension of E. coli -laden beach sand. When examining indicator bacteria source, flux, and context, the entire “beachshed” as a dynamic interacting system should be considered.

Applied and Environmental Microbiology↗

USGS1994

Correlation of basinal carbonate cycles to nearshore parasequences in the Late Cretaceous Greenhorn seaway, Western Interior U.S.A.

Upper Cretaceous limestone-shale couplets developed within the late transgressive stage of the Greenhorn cyclothem may be correlated from carbonate-dominated (basinal) sequences in central Kansas and Colorado westward to clastic cycles in southern Utah. Six such basinal couplets have been traced to corresponding upward-coarsening progradational cycles developed on the western margin of the Western Interior basin. In the central basin in Colorado and Kansas, these sedimentary cycles are represented by limestone-shale and marlstone-shale couplets ∼0.5-1.0 m in thickness. More calcareous parts of these couplets may be correlated westward into condensed, fossiliferous concretion and shell beds in proximal offshore lithofacies of Arizona and Utah. These concretion and shell beds are physically traceable farther landward (westward) into bioturbated, fossil-rich, transgressive lag deposits that bound 10- to 20-m-thick coarsening-upward progradational strand-plain deposits (parasequences) in southwestern Utah. Thus, the progra-dational phase of parasequence deposition correlates with accumulation of clay-rich sediment in the central basin, and the transgressive phase is characterized by reduced terrigenous input and deposition of carbonate-rich sediment. We consider Milankovitch-style orbital forcing of climate and tectonically induced fluctuations in rates of foredeep basin subsidence as possible forcing mechanisms for these basinwide events. Based on the widespread distribution of the limestone-shale couplets, as well as on estimated sedimentation rates and geochronology, it has been widely speculated that these carbonate cycles reflect Milankovitch cycles with periodicities on the order of 20 k.y. to 100 k.y. If so, then stratigraphic data suggest that orbital forcing of climate affected eustasy and/or sediment input and biogenic production in the Western Interior basin. Alternatively, thrusting events in the Sevier orogenic belt may have produced episodic changes in the rates of foredeep basin subsidence and consequent changes in base level, which could have controlled the deposition of the Greenhorn parasequences and carbonate cycles. In either case, correlation of these units demonstrates a consistent basinwide sedimentary response to high-frequency base level or sediment input changes in the Western Interior epicontinental basin.

Arizona, Colorado, Kansas, Utah↗

USGS2016

Getting quantitative about consequences of cross-ecosystem resource subsidies on recipient consumers

Most studies of cross-ecosystem resource subsidies have demonstrated positive effects on recipient consumer populations, often with very large effect sizes. However, it is important to move beyond these initial addition–exclusion experiments to consider the quantitative consequences for populations across gradients in the rates and quality of resource inputs. In our introduction to this special issue, we describe at least four potential models that describe functional relationships between subsidy input rates and consumer responses, most of them asymptotic. Here we aim to advance our quantitative understanding of how subsidy inputs influence recipient consumers and their communities. In the papers following, fish were either the recipient consumers or the subsidy as carcasses of anadromous species. Advancing general, predictive models will enable us to further consider what other factors are potentially co-limiting (e.g., nutrients, other population interactions, physical habitat, etc.) and better integrate resource subsidies into consumer–resource, biophysical dynamics models.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2022

Determination of optimal set of spatio-temporal features for predicting burn probability in the state of California, USA

Wildfires play a critical role in determining ecosystem structure and function and pose serious risks to human life, property and ecosystem services. Burn probability (BP) models the likelihood that a location could burn. Simulation models are typically used to predict BP but are computationally intensive. Machine learning (ML) pipelines can predict BP and reduce computational intensity. In this work, we tested approaches to reduce the set of input features used in an ML model to estimate BP for the state of California, USA, without loss of predictive performance. We used Principal Component Analysis (PCA) to determine the optimal set of features to use in our ML pipeline. Then, we mapped BP and compared model performance when using the reduced set and when using the whole set of features. Models using optimized input achieved similar prediction performance while using less than 50% of the input features.

California↗

USGS2013

Contraception can lead to trophic asynchrony between birth pulse and resources

Abiotic inputs such as photoperiod and temperature can regulate reproductive cyclicity in many species. When humans perturb this process by intervening in reproductive cycles, the ecological consequences may be profound. Trophic mismatches between birth pulse and resources in wildlife species may cascade toward decreased survival and threaten the viability of small populations. We followed feral horses (Equus caballus) in three populations for a longitudinal study of the transient immunocontraceptive porcine zona pellucida (PZP), and found that repeated vaccinations extended the duration of infertility far beyond the targeted period. After the targeted years of infertility, the probability of parturition from post-treated females was 25.6% compared to 64.1% for untreated females, when the data were constrained only to females that had demonstrated fertility prior to the study. Estimated time to parturition increased 411.3 days per year of consecutive historical treatment. Births from untreated females in these temperate latitude populations were observed to peak in the middle of May, indicating peak conception occurred around the previous summer solstice. When the post-treated females did conceive and give birth, parturition was an estimated 31.5 days later than births from untreated females, resulting in asynchrony with peak forage availability. The latest neonate born to a post-treated female arrived 7.5 months after the peak in births from untreated females, indicating conception occurred within 24–31 days of the winter solstice. These results demonstrate surprising physiological plasticity for temperate latitude horses, and indicate that while photoperiod and temperature are powerful inputs driving the biological rhythms of conception and birth in horses, these inputs may not limit their ability to conceive under perturbed conditions. The protracted infertility observed in PZP-treated horses may be of benefit for managing overabundant wildlife, but also suggests caution for use in small refugia or rare species.

PLoS ONE↗

USGS2009

Evaluation of methods and uncertainties in the chemical budgets

This chapter examines the uncertainties inherent in the water and chemical budgets of the lake in relation to the differences between chemical mass change in storage and to the balance between solute inputs and solute outputs associated with water fluxes. It begins by discussing uncertainty in the water budgets used to determine chemical budgets. It then examines uncertainties in chemical analyses of precipitation samples, surface water samples, and groundwater samples. It also discusses alternative approaches to determining chemical budgets. It describes the methods used to calculate chemical mass input from the tributaries, chemical mass loss by surface outflow, chemical mass input from groundwater, and chemical mass loss by flow through groundwater.

New Hampshire↗

USGS2007

Occurrence of pesticides in water, sediment, and soil from the Yolo Bypass, California

The objective of this study was to evaluate the potential sources of pesticides to the Yolo Bypass, including those that could potentially impact critical life stages of resident fish. To assess direct inputs during inundation, pesticide concentrations were analyzed in water and suspended and bed sediment samples collected from source watersheds during high-flow events. To understand inputs from direct application on fields, pesticides were also measured in soils collected from several sites within the Bypass. Thirteen current-use pesticides were detected in water samples collected in 2004 with the highest pesticide concentrations observed at the input sites to the Bypass during high-flow. Hexazinone and simazine were detected at all sites and at some of the highest concentrations. In bed and suspended sediments collected in 2004 and 2005, thirteen current-use pesticides were detected along with DDT and its metabolites. Trifluralin, DDE, and DDT were highest in the bed sediments, whereas oxyfluorfen and thiobencarb were highest in the suspended sediments. With the exception of the three organochlorine insecticides, suspended sediments had higher pesticide concentrations compared to bed sediments, indicating the potential for pesticide transport especially during high-flow events. Soil samples were dominated by DDT and its degradates but also contained a variety of current-use pesticides typically at lower concentrations. The types of pesticides detected in water and sediments were correlated with agricultural application in each watershed. Understanding the distribution of pesticides between the water and sediment is important in assessing their fate and transport within the Bypass, and in evaluating the exposure and potential effects to resident fish.

California↗

USGS2018

Changes in freshwater mussel communities linked to legacy pollution in the Lower Delaware River

Freshwater mussels are among the most-imperiled organisms worldwide, although they provide a variety of important functions in the streams and rivers they inhabit. Among Atlantic-slope rivers, the Delaware River is known for its freshwater mussel diversity and biomass; however, limited data are available on the freshwater mussel fauna in the lower, non-tidal portion of the river. This section of the Delaware River has experienced decades of water-quality degradation from both industrial and municipal sources, primarily as a function of one of its major tributaries, the Lehigh River. We completed semi-quantitative snorkel surveys in 53.5 of the 121 km of the river to document mussel community composition and the continued impacts from pollution (particularly inputs from the Lehigh River) on mussel fauna. We detected changes in mussel catch per unit effort (CPUE) below the confluence of the Lehigh River, with significant declines in the dominant species Elliptio complanata (Eastern Elliptio) as we moved downstream from its confluence—CPUE dropped from 179 to 21 mussels/h. Patterns in mussel distribution around the Lehigh confluence matched chemical signatures of Lehigh water input. Specifically, Eastern Elliptio CPUE declined more quickly moving downstream on the Pennsylvania bank, where Lehigh River water input was more concentrated compared to the New Jersey bank. A definitive causal link remains to be established between the Lehigh River and the dramatic shifts in mussel community composition, warranting continued investigation as it relates to mussel conservation and restoration in the basin.

Lower Delaware River↗

USGS2011

Developing seismogenic source models based on geologic fault data

Calculating seismic hazard usually requires input that includes seismicity associated with known faults, historical earthquake catalogs, geodesy, and models of ground shaking. This paper will address the input generally derived from geologic studies that augment the short historical catalog to predict ground shaking at time scales of tens, hundreds, or thousands of years (e.g., SSHAC 1997). A seismogenic source model, terminology we adopt here for a fault source model, includes explicit three-dimensional faults deemed capable of generating ground motions of engineering significance within a specified time frame of interest. In tectonically active regions of the world, such as near plate boundaries, multiple seismic cycles span a few hundred to a few thousand years. In contrast, in less active regions hundreds of kilometers from the nearest plate boundary, seismic cycles generally are thousands to tens of thousands of years long. Therefore, one should include sources having both longer recurrence intervals and possibly older times of most recent rupture in less active regions of the world rather than restricting the model to include only Holocene faults (i.e., those with evidence of large-magnitude earthquakes in the past 11,500 years) as is the practice in tectonically active regions with high deformation rates. During the past 15 years, our institutions independently developed databases to characterize seismogenic sources based on geologic data at a national scale. Our goal here is to compare the content of these two publicly available seismogenic source models compiled for the primary purpose of supporting seismic hazard calculations by the Istituto Nazionale di Geofisica e Vulcanologia (INGV) and the U.S. Geological Survey (USGS); hereinafter we refer to the two seismogenic source models as INGV and USGS, respectively. This comparison is timely because new initiatives are emerging to characterize seismogenic sources at the continental scale (e.g., SHARE in the Euro-Mediterranean, http://www.share-eu.org/; EMME in the Middle East, http://www.emme-gem.org/) and global scale (e.g., GEM, http://www.globalquakemodel.org/; Anonymous 2008). To some extent, each of these efforts is still trying to resolve the level of optimal detail required for this type of compilation. The comparison we provide defines a common standard for consideration by the international community for future regional and global seismogenic source models by identifying the necessary parameters that capture the essence of geological fault data in order to characterize seismogenic sources. In addition, we inform potential users of differences in our usage of common geological/seismological terms to avoid inappropriate use of the data in our models and provide guidance to convert the data from one model to the other (for detailed instructions, see the electronic supplement to this article). Applying our recommendations will permit probabilistic seismic hazard assessment codes to run seamlessly using either seismogenic source input. The USGS and INGV database schema compare well at a first-level inspection. Both databases contain a set of fields representing generalized fault three-dimensional geometry and additional fields that capture the essence of past earthquake occurrences. Nevertheless, there are important differences. When we further analyze supposedly comparable fields, many are defined differently. These differences would cause anomalous results in hazard prediction if one assumes the values are similarly defined. The data, however, can be made fully compatible using simple transformations.

Seismological Research Letters↗