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At least 487 records · Page 27Linked to original sources

Using isotopic data to evaluate Esox lucius (Linnaeus, 1758) natal origins in a hydrologically complex river basin

Otolith microchemistry has emerged as a powerful technique with which to identify the natal origins of fishes, but it relies on differences in underlying geology that may occur over large spatial scales. An examination of how small a spatial scale on which this technique can be implemented, especially in water bodies that share a large proportion of their flow, would be useful for guiding aquatic invasive species control efforts. We examined trace isotopic signatures in northern pike ( Esox lucius ) otoliths to estimate their provenance between two reservoirs in the Upper Yampa River Basin, Colorado, USA. This is a challenging study area as these reservoirs are only 11-rkm apart on the same river and thus share a high proportion of their inflow. We found that three isotopes ( 86 Sr, 137 Ba, and 55 Mn) were useful in discriminating between these reservoirs, but their signatures varied annually, and the values overlapped. Strontium isotope ratios ( 87 Sr/ 86 Sr) were different between sites and relatively stable across three years, which made them an ideal marker for determining northern pike provenance. Our study demonstrates the usefulness of otolith microchemistry for natal origin determination within the same river over a relatively small spatial scale when there are geologic differences between sites, especially geologic differences underlying tributaries between sites.

Colorado↗

Elevated winter stream temperatures below wastewater treatment plants shift reproductive development of female Johnny Darter Etheostoma nigrum: A field and histologic approach

River water temperatures are increasing globally, particularly in urban systems. In winter, wastewater treatment plant (WWTP) effluent inputs are of particular concern because they increase water temperatures from near freezing to ~7–15 °C. Recent laboratory studies suggest that warm overwinter temperatures impact the reproductive timing of some fishes. To evaluate winter water temperature’s influence in the wild, we sampled Johnny Darter Etheostoma nigrum from three urban South Platte River tributaries in Colorado upstream and downstream of WWTP effluent discharge sites. Fish were collected weekly during the spring spawning season of 2021 and reproductive development was determined from histological analysis of the gonads. Winter water temperatures were approximately 5–10 °C greater ~300 m downstream of the WWTP effluent compared to upstream sites, and approximately 3 °C warmer at sampling sites ~5000 m downstream of the effluent discharge. Females collected downstream of WWTP effluent experienced accelerated reproductive development compared to upstream by 1–2 weeks. Water quality, including total estrogenicity, and spring water temperatures did not appear to explain varying reproductive development. It appears that small increases in winter water temperature influence the reproductive timing in E. nigrum . Further investigations into how shifts in reproductive timing influence other population dynamics are warranted.

Colorado↗

Evidence for the use of mucus swabs to detect Renibacterium salmoninarum in brook trout

Efforts to advance fish health diagnostics have been highlighted in many studies to improve the detection of pathogens in aquaculture facilities and wild fish populations. Typically, the detection of a pathogen has required sacrificing fish; however, many hatcheries have valuable and sometimes irreplaceable broodstocks, and lethal sampling is undesirable. Therefore, the development of non-lethal detection methods is a high priority. The goal of our study was to compare non-lethal sampling methods with standardized lethal kidney tissue sampling that is used to detect Renibacterium salmoninarum infections in salmonids. We collected anal, buccal, and mucus swabs (non-lethal qPCR) and kidney tissue samples (lethal DFAT) from 72 adult brook trout ( Salvelinus fontinalis ) reared at the Colorado Parks and Wildlife Pitkin Brood Unit and tested each sample to assess R. salmoninarum infections. Standard kidney tissue detected R. salmoninarum 1.59 times more often than mucus swabs, compared to 10.43 and 13.16 times more often than buccal or anal swabs, respectively, indicating mucus swabs were the most effective and may be a useful non-lethal method. Our study highlights the potential of non-lethal mucus swabs to sample for R. salmoninarum and suggests future studies are needed to refine this technique for use in aquaculture facilities and wild populations of inland salmonids.

Pathogens↗

Factors affecting post-challenge survival of Flavobacterium psychrophilum in susceptible rainbow trout from the literature

Infectious bacterial pathogens are a concern for aquaculture as estimates suggest that billions of US dollars are lost annually in aquaculture due to disease. One of the most prevalent salmonid pathogens is the bacterium Flavobacterium psychrophilum that causes bacterial coldwater disease. We reviewed the published F. psychrophilum literature and conducted a Bayesian analysis to examine large-scale patterns in rainbow trout ( Oncorhynchus mykiss ) mortality associated with laboratory challenge. We incorporated factors that were common across a majority of the laboratory exposure studies and these included bacterial dose, culture time, exposure method, bacterial isolate, experimental duration, and fish weight. The comparison showed that injection as the exposure method produced higher mortality than bath immersion, bacterial isolates differed in their effect on mortality, and bacterial dose has an interactive effect with fish weight and exposure method. Our comparison allows for inference on factors affecting rainbow trout mortality due to exposure to F. psychrophilum and suggests avenues to further optimize research protocols to better reach study goals.

Pathogens↗

Using uncrewed aerial vehicles for identifying the extent of invasive Phragmites australis in treatment areas enrolled in an adaptive management program

Higher spatial and temporal resolutions of remote sensing data are likely to be useful for ecological monitoring efforts. There are many different treatment approaches for the introduced European genotype of Phragmites australis , and adaptive management principles are being integrated in at least some long-term monitoring efforts. In this paper, we investigated how natural color and a smaller set of near-infrared (NIR) images collected with low-cost uncrewed aerial vehicles (UAVs) could help quantify the aboveground effects of management efforts at 20 sites enrolled in the Phragmites Adaptive Management Framework (PAMF) spanning the coastal Laurentian Great Lakes region. We used object-based image analysis and field ground truth data to classify the Phragmites and other cover types present at each of the sites and calculate the percent cover of Phragmites , including whether it was alive or dead, in the UAV images. The mean overall accuracy for our analysis with natural color data was 91.7% using four standardized classes (Live Phragmites , Dead Phragmites , Other Vegetation, Other Non-vegetation). The Live Phragmites class had a mean user’s accuracy of 90.3% and a mean producer’s accuracy of 90.1%, and the Dead Phragmites class had a mean user’s accuracy of 76.5% and a mean producer’s accuracy of 85.2% (not all classes existed at all sites). These results show that UAV-based imaging and object-based classification can be a useful tool to measure the extent of dead and live Phragmites at a series of sites undergoing management. Overall, these results indicate that UAV sensing appears to be a useful tool for identifying the extent of Phragmites at management sites.

Michigan, Wisconsin↗

Landscape effects of wildfire on permafrost distribution in interior Alaska derived from remote sensing

Climate change coupled with an intensifying wildfire regime is becoming an important driver of permafrost loss and ecosystem change in the northern boreal forest. There is a growing need to understand the effects of fire on the spatial distribution of permafrost and its associated ecological consequences. We focus on the effects of fire a decade after disturbance in a rocky upland landscape in the interior Alaskan boreal forest. Our main objectives were to (1) map near-surface permafrost distribution and drainage classes and (2) analyze the controls over landscape-scale patterns of post-fire permafrost degradation. Relationships among remote sensing variables and field-based data on soil properties (temperature, moisture, organic layer thickness) and vegetation (plant community composition) were analyzed using correlation, regression, and ordination analyses. The remote sensing data we considered included spectral indices from optical datasets (Landsat 7 Enhanced Thematic Mapper Plus (ETM+) and Landsat 8 Operational Land Imager (OLI)), the principal components of a time series of radar backscatter (Advanced Land Observing Satellite—Phased Array type L-band Synthetic Aperture Radar (ALOS-PALSAR)), and topographic variables from a Light Detection and Ranging (LiDAR)-derived digital elevation model (DEM). We found strong empirical relationships between the normalized difference infrared index (NDII) and post-fire vegetation, soil moisture, and soil temperature, enabling us to indirectly map permafrost status and drainage class using regression-based models. The thickness of the insulating surface organic layer after fire, a measure of burn severity, was an important control over the extent of permafrost degradation. According to our classifications, 90% of the area considered to have experienced high severity burn (using the difference normalized burn ratio (dNBR)) lacked permafrost after fire. Permafrost thaw, in turn, likely increased drainage and resulted in drier surface soils. Burn severity also influenced plant community composition, which was tightly linked to soil temperature and moisture. Overall, interactions between burn severity, topography, and vegetation appear to control the distribution of near-surface permafrost and associated drainage conditions after disturbance.

Alaska↗

Development of a large-volume concentration method to recover infectious avian influenza virus from the aquatic environment

Since late 2021, outbreaks of highly pathogenic avian influenza virus have caused a record number of mortalities in wild birds, domestic poultry, and mammals in North America. Wetlands are plausible environmental reservoirs of avian influenza virus; however, the transmission and persistence of the virus in the aquatic environment are poorly understood. To explore environmental contamination with the avian influenza virus, a large-volume concentration method for detecting infectious avian influenza virus in waterbodies was developed. A variety of filtering, elution, and concentration methods were explored, in addition to testing filtering speeds using artificially amended 20 L water matrices (deionized water with sterile dust, autoclaved wetland water, and wetland water). The optimal protocol was dead-end ultrafiltration coupled with salt solution elution and centrifugation concentration. Using this method, infectious virus was recovered at 1 × 10 −1 50% egg infectious dose per milliliter (EID 50 /mL), whereas viral RNA was detected inconsistently down to 1 × 10 0 EID 50 /mL. This method will aid in furthering our understanding of the avian influenza virus in the environment and may be applicable to the environmental detection of other enveloped viruses.

Ohio↗

Assessing impacts of human stressors on stream fish habitats across the Mississippi River basin

Effective conservation of stream fishes and their habitats is complicated by the fact that human stressors alter the way in which natural factors such as stream size, catchment geology, and regional climate influence stream ecosystems. Consequently, efforts to assess the condition of stream fishes and their habitats must not only attempt to characterize the effects of human stressors but must account for the effects of natural influences as well. This study is an assessment of all stream fish habitats in the Mississippi River basin, USA. The basin supports over 400 stream fish species, drains a land area of 3.2 M km 2 , and includes a myriad of human stressors such as intensive agriculture, urbanization, nutrient loading, and habitat fragmentation by dams and road/stream crossings. To effectively characterize types and levels of human stressors specifically impacting the basin’s stream fish species, our assessment approach first accounted for the influence of natural landscape conditions on species abundances with multiple steps, including stratifying our analyses by region and stream size and quantitatively modeling the influences of natural factors on stream fishes. We next quantified individual fish species responses to explicit human stressors for different measures of land use, fragmentation, and water quality, including summaries of measures in local vs. catchment extents. Results showed that many species had negative threshold responses to human stressors and that impacts varied by species, by region, and by the spatial extents in which stressors were summarized. Our spatially explicit results indicated the degree of stream reach impairment for specific stressor categories, for individual species, and for entire assemblages, all of which are types of information that can aid decision makers in achieving specific conservation goals in the region.

Mississippi River basin↗

Temporospatial shifts in Sandhill Crane staging in the Central Platte River Valley in response to climatic variation and habitat change

Over 80% of the Mid-Continent Sandhill Crane ( Antigone canadensis ) Population (MCP), estimated at over 660,000 individuals, stops in the Central Platte River Valley (CPRV) during spring migration from mid-February through mid-April. Research suggests that the MCP may be shifting its distribution spatially and temporally within the CPRV. From 2002 to 2017, we conducted weekly aerial surveys of Sandhill Cranes staging in the CPRV to examine temporal and spatial trends in their abundance and distribution. Then, we used winter temperature and drought severity measures from key wintering and early migratory stopover locations to assess the impacts of weather patterns on annual migration chronology in the CPRV. We also evaluated channel width and land cover characteristics using aerial imagery from 1938, 1998, and 2016 to assess the relationship between habitat change and the spatial distribution of the MCP in the CPRV. We used generalized linear models, cumulative link models, and Akaike’s information criterion corrected for small sample sizes (AICc) to compare temporal and spatial models. Temperatures and drought conditions at wintering and migration locations that are heavily used by Greater Sandhill Cranes ( A. c. tabida ) best predicted migration chronology of the MCP to the CPRV. The spatial distribution of roosting Sandhill Cranes from 2015 to 2017 was best predicted by the proportion of width reduction in the main channel since 1938 (rather than its width in 2016) and the proportion of land cover as prairie-meadow habitat within 800 m of the Platte River. Our data suggest that Sandhill Cranes advanced their migration by an average of just over 1 day per year from 2002 to 2017, and that they continued to shift eastward, concentrating at eastern reaches of the CPRV. Climate change, land use change, and habitat loss have all likely contributed to Sandhill Cranes coming earlier and staying longer in fewer reaches of the CPRV, increasing their site use intensity. These historically unprecedented densities may present a disease risk to Sandhill Cranes and other waterbirds, including Whooping Cranes ( Grus americana ). Our models suggest that conservation actions may be maintaining Sandhill Crane densities in areas that would otherwise be declining in use. We suggest that management actions intended to mitigate trends in the distribution of Sandhill Cranes, including wet meadow restoration, may similarly benefit prairie- and braided river–endemic species of concern.

Nebraska↗

Southeast Utah Group climate and drought adaptation report: Exposure and perennial grass sensitivity

National Park Service (NPS) managers face growing challenges resulting from the effects of climate change. In particular, as temperatures rise in coming decades, natural resource management in the western United States must cope with expectations for elevated severity and frequency of droughts. These challenges are particularly pronounced for vegetation managers in dryland environments. Developing adaptive strategies requires specific information about the expected magnitude of change in climate and drought conditions as well as insights into how those changes will affect important vegetation resources. This report describes research focused on Southeast Utah Group (SEUG) park units designed to provide information about exposure and sensitivity of perennial grasses to aridification. Analyses at larger regional scales are also reported for context and comparison. This report is a product of an ongoing climate adaptation collaboration between the U.S. Geological Survey (USGS), NPS, and Northern Arizona University. The study it summarizes contributes quantitative ingredients for vulnerability assessments that are needed in the Climate-Smart Conservation framework. As such, the results informed a series of climate adaptation workshops conducted between 2018 and 2021 for Colorado Plateau scientists and managers. This is a giant step forward in science-informed management. The information in this report can be used to craft management strategies that can be implemented at the right place and time for individual species of concern.

Colorado, Utah↗

Roosting habitat use by sandhill cranes and waterfowl on the North and South Platte Rivers in Nebraska

Migration ecology and habitat use of spring migrating birds using the Central Platte River is a well-explored topic, yet less is known about use of the North and South Platte rivers (NSPR) in western Nebraska. The efficiency and effectiveness of conservation efforts in the NSPR could be greatly improved with access to information about where and when birds roost and landscape prioritization tools. We used aerial surveys to determine population distribution and migration phenology of sandhill cranes Antigone canadensis , Canada geese Branta canadensis , and ducks using the NSPR for roosting during the mid-February to mid-April spring migration. We used these data and geospatial information to identify important river reaches for these species and habitat covariates that discriminate between those used at lower and higher densities. We found that sandhill cranes and waterfowl generally roosted in different segments of the NSPR and, subsequently, different factors were associated with high densities. Sandhill crane density was positively correlated with distance from obstructions greater than 1 m high and negatively correlated with area of unvegetated sandbar within 1 km. Density of Canada geese and ducks was high in segments positively associated with wetland and sand pit habitats. Human disturbance variables such as roads and bridges in this rural region had little effect on identification of roosting areas used by high densities of all groups. On the basis of our results, habitat conservation efforts that specifically target sandhill cranes will not have similar positive effects on waterfowl use and distribution in the NSPR. Our identification of the most important river segments should allow managers to better target land acquisition or management resources to areas that will have the greatest effect on either waterfowl or sandhill cranes during spring migration.

Nebraska↗

Meromixis in hypersaline Mono Lake, California. 2. Nitrogen fluxes

Vertical fluxes of nitrogen were examined in hypersaline Mono Lake over a 9-yr period which encompassed the onset, persistence, and breakdown of meromixis. Under monomictic conditions, ammonia, which accumulates in the hypolimnion, is mixed into the euphotic region during autumn overturn. Following the onset of meromixis in 1983 and elimination of the winter period of holomixis, ammonia was depleted in the mixolimnion and accumulated beneath the chemocline. The mean rate of particulate nitrogen deposition, as measured by sediment traps over a 2-yr period during meromixis, was 2.0 mmol m −2 d −1 . Until meromixis weakened in 1988, ammonia concentrations in the euphotic zone remained below 5 µ M and increased to ~500 µ M beneath the chemocline. Meromixis ended in November 1988 and a large pulse of ammonia was injected into surface waters, resulting in surface ammonia concentrations of ~45 µ M. Because the pH of Mono Lake is high (9.8) the : ratio is ~5, and elevated surface concentrations of ammonia during the 2 yr following breakdown of meromixis resulted in high losses of nitrogen via ammonia volatilization (mean, ~10 mmol m − 2 d −1 ). High release rates of ammonia from the sediments were estimated from both the ammonia gradients in pore-water profiles (3–10 mmol m −2 d −1 ) and the balance of mixolimnetic nitrogen fluxes (4–10 mmol m −2 d −1 ). The monimolimnetic balance suggested fluxes of ammonia out of the sediments below the chemocline were reduced during meromixis.

California↗

Standard data management practices

Accomplishing data management in a standardized and practical way begins with an understanding of what data management is. The Data Management Association defines data management as “the development, execution, and supervision of plans, policies, programs, and practices that deliver, control, protect, and enhance the value of data and information assets throughout their lifecycles” (Earley 2017). In this chapter, we present the tenets of data management in the context of fisheries for our target audience: fisheries biologists who may have limited formal training in data science. Experienced data managers may also benefit from the contents of this chapter, but the authors’ goal is to enhance and improve those activities that produce data, from project planning to acquiring data through field sampling, to cataloging and analyzing data, to sharing and archiving data.

Book chapter↗

Observing glacier elevation changes from spaceborne optical and radar sensors – an inter-comparison experiment using ASTER and TanDEM-X data

Observations of glacier mass changes are key to understanding the response of glaciers to climate change and related impacts, such as regional runoff, ecosystem changes, and global sea level rise. Spaceborne optical and radar sensors make it possible to quantify glacier elevation changes, and thus multi-annual mass changes, on a regional and global scale. However, estimates from a growing number of studies show a wide range of results with differences often beyond uncertainty bounds. Here, we present the outcome of a community-based inter-comparison experiment using spaceborne optical stereo (ASTER) and synthetic aperture radar interferometry (TanDEM-X) data to estimate elevation changes for defined glaciers and target periods that pose different assessment challenges. Using provided or self-processed digital elevation models (DEMs) for five test sites, 12 research groups provided a total of 97 spaceborne elevation-change datasets using various processing approaches. Validation with airborne data showed that using an ensemble estimate is promising to reduce random errors from different instruments and processing methods but still requires a more comprehensive investigation and correction of systematic errors. We found that scene selection, DEM processing, and co-registration have the biggest impact on the results. Other processing steps, such as treating spatial data voids, differences in survey periods, or radar penetration, can still be important for individual cases. Future research should focus on testing different implementations of individual processing steps (e.g. co-registration) and addressing issues related to temporal corrections, radar penetration, glacier area changes, and density conversion. Finally, there is a clear need for our community to develop best practices, use open, reproducible software, and assess overall uncertainty to enhance inter-comparison and empower physical process insights across glacier elevation-change studies.

The Cryosphere↗

In situ nuclear magnetic resonance response of permafrost and active layer soil in boreal and tundra ecosystems

Characterization of permafrost, particularly warm and near-surface permafrost which can contain significant liquid water, is critical to understanding complex interrelationships with climate change, ecosystems, and disturbances such as wildfires. Understanding the vulnerability and resilience of permafrost requires an interdisciplinary approach, relying on (for example) geophysical investigations, ecological characterization, direct observations, remote sensing, and more. As part of a multi-year investigation into the impacts of wildfires to permafrost, we have collected in situ measurements of the nuclear magnetic resonance (NMR) response of active layer and permafrost in a variety of soil conditions, types, and saturations. In this paper, we summarize the NMR data and present quantitative relationships between active layer and permafrost liquid water content and pore sizes. Through statistical analyses and synthetic freezing simulations, we also demonstrate that borehole NMR can image the nucleation of ice within soil pore spaces.

Alaska↗

Cause of death, pathology, and chronic wasting disease status of white-tailed deer (Odocoileus virginianus) mortalities in Wisconsin

White-tailed deer (WTD; Odocoileus virginianus ) are a critical species for ecosystem function and wildlife management. As such, studies of cause-specific mortality among WTD have long been used to understand population dynamics. However, detailed pathological information is rarely documented for free-ranging WTD, especially in regions with a high prevalence of chronic wasting disease (CWD). This leaves a significant gap in understanding how CWD is associated with disease processes or comorbidities which may subsequently alter broader population dynamics. In this study, we investigated unknown mortalities among collared WTD in southwestern Wisconsin, an area of high CWD prevalence. We tested for associations between CWD and other disease processes and used a network approach to test for co-occurring disease processes. Predation and infectious disease were top suspected causes of death, with high prevalence of CWD (42.4%; of 245 evaluated) and pneumonia (51.2%; of 168 evaluated) in our sample. CWD prevalence increased with age, before decreasing among older individuals, with more older females than males in our sample. Females were more likely to be CWD positive, and while this was not statistically significant when accounting for age, females were significantly more likely to die with end-stage CWD than were males and may consequently be an underrecognized source of CWD transmission. Presence of CWD was associated with emaciation, atrophy of marrow fat and hematopoietic cells, and ectoparasitism (i.e., lice, ticks). Occurrences of severe infectious disease pathologies clustered together (e.g., pneumonia, CWD), as compared to non-infectious or low severity processes (e.g., sarcocystosis). However, pneumonia cases were not fully explained by CWD status. With the prevalence of CWD increasing across North America, our results highlight the critical importance of understanding the potential role of CWD in favoring or maintaining disease processes of importance for deer population health and dynamics.

Wisconsin↗

Evaluation of the flathead catfish population and fishery on Lake Carl Blackwell, Oklahoma, with emphasis on the effects of noodling

I conducted a 3-year study at Lake Carl Blackwell, Oklahoma to estimate effects of various fishing gears on the flathead catfish Pylodictis olivaris population. Managers were particularly interested in the effect of handfishing or noodling on this population. I used a phone survey to assess angler effort and electrofishing and gill nets to calculate standard population metrics to assess composition of the current population. Survey data indicated that fishing effort and harvest were highest for trotlines and juglines and lowest for noodling. Size distribution of fish harvested by noodlers was not different from sizes that were available in the fishery and was similar to those fish harvested with other gears. Flathead catfish Sampled in Lake Carl Blackwell ranged in size from 38 to 1,220 mm total length, and 77% of the population was less than 508 mm (minimum legal size). Estimated total annual mortality was about 11%. Proportional size distribution (PSD) of flathead catfish for Lake Carl Blackwell indicates that about 70% of legal-sized flathead catfish were over the preferred size of 710 mm. Overall, the Lake Carl Blackwell flathead catfish population appeared healthy. There were a wide range of sizes and ages in the population, and PSD indicated a well-balanced population with many preferred and memorable-sized fish. Due to its rarity, noodling is probably not adversely influencing the population. Additionally, noodling at Lake Carl Blackwell does not appear to be as size-selective as previously thought.

Oklahoma↗

Secretion of anti-Müllerian hormone in the Florida manatee Trichechus manatus latirostris , with implications for assessing conservation status

Environmental and anthropogenic stressors can affect wildlife populations in a number of ways. For marine mammals (e.g. the Florida manatee Trichechus manatus latirostris ), certain stressors or conservation risk factors have been identified, but sublethal effects have been very difficult to assess using traditional methods. The development of 'biomarkers' allows us to correlate effects, such as impaired reproduction, with possible causes. A recently developed biomarker (anti-Müllerian hormone, AMH) provides an enzyme-linked immunosorbent assay of gonadal function. The study objective was to determine AMH levels in wild manatees. In total, 28 male and 17 female manatee serum samples were assayed. Animal demographics included collection date, body weight (kg) and total length (cm). In certain cases, age of individuals was also known. AMH levels ranged from 160 to 2451.85 ng ml -1 (mean = 844.65 ng ml -1 ) in males and 0.00 to 0.38 ng ml -1 (mean = 0.10 ng ml-1) in females. Linear regression analyses revealed a significant relationship between male AMH levels and body weight (R 2 = 0.452; p < 0.001) and length (R 2 = 0.338; p < 0.001). Due to the small sample size, regression analyses for female AMH and body weight and length were not significant. This represents the first report of AMH detection in a marine mammal. AMH levels in male manatees are the highest of any species observed to date, whereas levels in females are within reported ranges. Further studies will promote improved conservation decision by assessing AMH levels in the manatee as a function of various stressors including, but not limited to, nutritional status, serious injuries (e.g. watercraft collisions), exposure to biotoxins or contaminants, or disease.

Florida↗