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At least 487 records · Page 27Linked to original sources
USGS2020

Emerging diseases of avian wildlife

Climate change and the interaction with humans and domestic species influences disease in avian wildlife. This article provides updated information on emerging disease conditions such as the spread of an Asian tick, Haemaphysalis longicornis, and its associated diseases among migratory birds in the eastern United States; lymphoproliferative disease virus in wild turkeys in the United States; and salmonellosis, particularly among passerines, which has zoonotic potential. In addition, it includes updated information on West Nile virus, Wellfleet Bay virus, and avian influenza and is intended to serve as a complement to the current veterinary literature for veterinarians treating avian wildlife species.

Veterinary Clinics of North America: Exotic Animal↗
USGS2009

A mosaic of diverse ideas: The ecological legacy of J. Frederick Grassle

During the 40 years (and counting) of his scientific career, J. Frederick Grassle has made fundamental contributions to our understanding of marine ecosystems from coral reefs to deep-sea sediments. His advocacy and passion for marine biodiversity in the form of myriad groundbreaking studies and influential reviews, his generosity of ideas and capacity to catalyze and inspire those working with him as well as the science community in general, his breakthroughs in improved ocean observation, his marine science infrastructure initiatives, together with his tireless persistence, have helped lead to major shifts in approaches to marine science and the shape of modern ocean studies to one that favours multidisciplinary research, teamwork, continuous, long-term observation, in situ experimentation, recognition of the importance of marine biodiversity, and global cooperation on research and data sharing. In shallow-water ecology, he co-discovered sibling species of Capitella spp., important not only because it is a key pollution indicator but also because the work helped to pave the way for the discovery of numerous sibling species in other taxa with major ramifications for ecological understanding. He was also a key player in the West Falmouth oil spill study which, along with complementary mesocosm experiments, remains one of the most important and detailed studies of its kind. He was also a lead player in the first biological expedition to hydrothermal vents and wrote the seminal articles that helped to inspire the flurry of vent research that followed. He is perhaps best known for his deep-sea work, where he brought submersibles to the forefront as a sampling tool, brought experimental manipulative studies to the primarily descriptive discipline of deep-sea benthic ecology, and generated tremendous excitement, debate, and rekindled interest in marine biodiversity with the first quantitative estimate of global deep-sea diversity. His efforts to document marine biodiversity resulted in the international Census of Marine Life, and his emphasis on the need for continuous, long-term ocean observation has led to breakthroughs in international cooperation in cabled observatories such as LEO-15. These efforts have also enhanced efforts to integrate ocean data on a global scale in platforms such as the Ocean Biogeographic Information System (OBIS). The diversity of his contributions to marine science mirror the immense marine diversity he has recognized, documented, and championed so effectively over the last four decades.

Deep-Sea Research Part II: Topical Studies in Ocea↗
USGS2022

Multi-species amphibian monitoring across a protected landscape: Critical reflections on 15 years of wetland monitoring in Grand Teton and Yellowstone national parks

Widespread amphibian declines were well documented at the end of the 20th century, raising concerns about the need to identify individual and interactive contributors to this global trend. At the same time, there was growing interest in the use of amphibians as ecological indicators. In the United States, wetland and amphibian monitoring programs were launched in some national parks as a necessary first step to evaluating the status and trends of amphibian populations within some of North America’s most protected areas. In Grand Teton and Yellowstone national parks, a multi-species amphibian monitoring program was launched by many of the authors in 2006 and continues to this day. This Viewpoint Article serves as a self-evaluation of our journey from conception through implementation of an ongoing, long-term monitoring program. This self-evaluation should provide a framework and guidance for other monitoring programs. We address whether we are fulfilling the program’s main objective of describing status and trends of the four amphibian species, discuss how a one-size-fits-all monitoring approach does not serve all species equally, and describe opportunities to bolster our core work using emerging statistical approaches and thoughtful integration of remote sensing and molecular tools. We also describe how the data generated over the program’s first 15 years have been useful beyond our initial goal of characterizing status and trend. Notably, our integration of climate datasets has allowed us to describe wetland and species-specific amphibian responses to variations in climate drivers. Documenting climate links to amphibian occurrence and their primary habitats has allowed us to identify which species, habitat types, and subregions within this large, protected landscape are most vulnerable to anticipated climate change. Recognizing that tools and threats change over time, it will be important to adapt our original monitoring design to maximize opportunities and use of resulting information. Maintaining engagement by multiple stakeholders and expanding our funding portfolio will also be necessary to sustain our program into the future. Finally, collaboration has become standard for long-term, cross-jurisdictional, landscape-scale monitoring. We argue that collaborative monitoring facilitates resource sharing, leveraging of limited funds, completion of work, and mutual learning. Such collaboration also increases the efficacy of conservation.

Wyoming↗
USGS2018

The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes

In this review article, we trace the history of events leading to the development of individual-based models (IBMs) to represent aquatic organisms in rivers and streams. As a metaphor, we present this history as a series of confluences between individual scientists (tributaries) sharing ideas. We describe contributions of these models to science and management. One iconic feature of river IBMs is the linkage between flow and the physical habitat experienced by individual animals, and the first model that focused on this linkage is briefly described. We continue by reviewing the contributions of riverine IBMs to eight broad areas of scientific inquiry. The first four areas include research to understand 1) the effects of flow regimes on fish populations, 2) species interactions (e.g., size-mediated competition and predation), 3) fish movement and habitat selection, and 4) contaminant and water quality impacts on populations. Next, we review research using IBMs 5) to guide conservation biology of imperiled taxa through population viability analysis, including research 6) to understand river fragmentation by dams and reconnection, 7) to understand genetic outcomes for riverine metapopulations, and 8) to anticipate the future effects of temperature and climate change. This rich body of literature has contributed to both theoretical insights (e.g., about animal behavior and life history) and applied insights (e.g., population-level effects of flow regimes, temperature, and the effects of hydropower and other industries that share rivers with aquatic biota). We finish by exploring promising branches that lie ahead in the braided, downstream channel that represents future river modeling research.

Ecological Modelling↗
USGS2013

Spatial dynamics of ecosystem service flows: a comprehensive approach to quantifying actual services

Recent ecosystem services research has highlighted the importance of spatial connectivity between ecosystems and their beneficiaries. Despite this need, a systematic approach to ecosystem service flow quantification has not yet emerged. In this article, we present such an approach, which we formalize as a class of agent-based models termed “Service Path Attribution Networks” (SPANs). These models, developed as part of the Artificial Intelligence for Ecosystem Services (ARIES) project, expand on ecosystem services classification terminology introduced by other authors. Conceptual elements needed to support flow modeling include a service's rivalness, its flow routing type (e.g., through hydrologic or transportation networks, lines of sight, or other approaches), and whether the benefit is supplied by an ecosystem's provision of a beneficial flow to people or by absorption of a detrimental flow before it reaches them. We describe our implementation of the SPAN framework for five ecosystem services and discuss how to generalize the approach to additional services. SPAN model outputs include maps of ecosystem service provision, use, depletion, and flows under theoretical, possible, actual, inaccessible, and blocked conditions. We highlight how these different ecosystem service flow maps could be used to support various types of decision making for conservation and resource management planning.

Ecosystem Services↗
USGS2014

The misconception of ecosystem disservices: How a catchy term may yield the wrong messages for science and society

In their recent article, Shapiro and Báldi (2014) build on the long-running narrative of “ecosystem services and disservices” (e.g., Zhang et al., 2007 ; Lyytimäki et al., 2008), describing how nature yields both benefits and harms to society. These harms include crop pests, floods, landslides, wildfires, and zoonotic disease transmission, among others. While we agree with their argument that calculation of these harms is commonplace and corresponding quantification of benefits is needed, we feel the use of the concept of “ecosystem disservices” hampers, rather than helps, the development of an integrative and constructive dialogue about conservation and the complex interrelationships between humans and nature. Estimation of costs and benefits and their balancing as positives or negatives is a principal activity in economics; however, we fear that in this case the term “disservice” carries the wrong message for both science and society.

Ecosystem Services↗
USGS2025

The Benefits Knowledges Learning Framework: A tool for learning across diverse knowledge systems in ecosystem valuation

Sustainable and just environmental management depends on meaningful consideration of the plural values of nature, as they arise in association with diverse worldviews and understandings of well-being. To achieve value pluralism in decision-making, we must also attend to knowledge pluralism, in terms of recognizing the validity and decision relevance of a broader suite of knowledge forms that convey diverse understandings of well-being and benefit. In this article, we outline a social learning tool – the Benefits Knowledges Learning Framework – that supports expanded thinking about decision-relevant, actionable knowledge, and the associated spectrum of available opportunities to learn from these diverse knowledge forms across phases of decision-making. It does so through: 1) cultivation of reflexivity and mutual learning about the knowledge systems of diverse actors involved in the decision process; 2) identification of diverse benefits knowledge forms that are available to inform decision-making; and 3) identification of opportunities to learn from these knowledge forms. Diverse forms of benefits knowledge include both knowledge products (documentation) and knowledge practices (lived and embodied). The framework can be applied to retrospective case analysis to understand and learn from constraints and enabling factors in past decision processes. It can also be applied to assess on-going decision-making and identify current opportunities for improvement. The framework begins with a start-up phase that encourages those applying the framework to address any concerns raised by stakeholders and rightsholders and determine whether framework application is appropriate in a particular context.

Washington↗
USGS2019

Drivers and impacts of water level fluctuations in the Mississippi River delta: Implications for delta restoration

This review synthesizes the knowledge regarding the environmental forces affecting water level variability in the coastal waters of the Mississippi River delta and relates these fluctuations to planned river diversions. Water level fluctuations vary significantly across temporal and spatial scales, and are subject to influences from river flow, tides, vegetation, atmospheric forcing, climate change, and anthropogenic activities. Human impacts have strongly affected water level variability in the Mississippi River delta and other deltas worldwide. Collectively, the research reviewed in this article is important for enhancing environmental, economic, and social resilience and sustainability by assessing, mitigating, and adapting to geophysical changes that will cascade to societal systems in the coming decades in the economically and environmentally important Mississippi River delta. Specifically, this information provides a context within which to evaluate the impacts of diversions on the hydrology of the Mississippi delta and creates a benchmark for the evaluation of the impact of water level fluctuations on coastal restoration projects worldwide.

Louisiana↗
USGS2021

Mangroves and people: Impacts and interactions

Mangroves have long been associated with human populations, as coastal communities rely on the various ecosystem services that mangroves provide. However, human degradation and destruction of mangrove forests is common, despite and because of our reliance on them as valuable ecosystems. Mangrove research and management must elucidate and reconcile these conflicts to maintain mangrove forests and the services that humans depend on. To better understand the complex dynamics, interactions and relationships that exist between mangroves and coastal communities, the 5th Mangrove Macrobenthos and Management (MMM5) conference was held in Singapore in July 2019, with the theme “ Mangroves and People: Impacts and Interactions”. This theme was chosen because Southeast Asia is the epicentre of ongoing mangrove loss, and a large number of coastal communities in the region rely on the ecosystem services that mangroves provide. The 32 papers published in this Special Issue represent the breadth of mangrove research presented at MMM5, including topics in faunal biology, ecosystem ecology, genetics, physical geography, biogeochemistry, remote sensing and the social sciences. The articles are characterized under the following topics: 1) mangrove ecosystem functioning; 2) range expansion of mangroves; 3) ecosystem services of mangroves; 4) anthropogenic and natural threats to mangroves; and 5) the management and social-ecology of mangroves. This Special Issue highlights the current state of the art of mangrove research and application, and describes a number of emerging new ideas and research opportunities that will continue to advance mangrove ecosystem science into the future.

Estuarine, Coastal and Shelf Science↗
USGS2021

What's left before participatory modeling can fully support real-world environmental planning processes: A case study review

In environmental participatory modeling (PM), both computer and non-computer-based modeling techniques are used to aid participatory problem description, solution, and decision-making actions in environmental contexts. Although many PM case studies have been published, few efforts have sought to systematically describe and understand dominant PM processes or establish best practices for PM. As a first step, we have reviewed a random sample of environmental PM case study articles (n = 60) using a novel PM process evaluation instrument. We found that significant work likely remains for PM to fully support participatory and integrated planning processes. While PM reports systematically address knowledge integration and learning, they often neglect the facilitation of a multi-value perspective within a democratic process , and the integration across organizations within a governance system. If not reported, we suspect these aspects are also neglected in practice. We conclude with key research and practice issues for improving PM as an approach for real-world participatory planning and governance.

Environmental Modelling & Software↗
USGS2025

From hydrated silica to quartz: Potential hydrothermal precipitates found in Jezero crater, Mars

On Earth, silica-rich phases from opal to quartz are important indicators and tracers of geological processes. Hydrated silica, such as opal, is a particularly good matrix for the preservation of molecular and macroscopic biosignatures. Cherts, a type of silica-dominated rocks, provide a unique archive of ancient terrestrial life while quartz is the emblematic mineral of the Earth's continental crust. On Mars, hydrated silica has been detected in several locations based on remote sensing and rover-based studies. In the present article we report on the detection of cobbles made of hydrated silica (opal or chalcedony), as well as well-crystallized quartz. These detections were made with the SuperCam instrument onboard Perseverance (Mars 2020 mission), using a combination of LIBS, infrared and Raman spectroscopy. Quartz-dominated stones are detected unambiguously for the first time on the Martian surface, and based on grain size and crystallinity are proposed to be of hydrothermal origin. Although these rocks were all found as float, we propose that these detections are part of a common hydrothermal system, and represent different depths / temperatures of precipitation. This attests that hydrothermal processes were active in and around Jezero crater, possibly triggered by the Jezero crater-forming impact. These silica-rich rocks, in particular opaline silica, are very promising targets for sampling and return to Earth given their high biosignature preservation potential.

Earth and Planetary Science Letters↗
USGS2017

Effects of environmental covariates and density on the catchability of fish populations and interpretation of catch per unit effort trends

Article for outlet: Fisheries Research. Abstract: Quantifying temporal and spatial trends in abundance or relative abundance is required to evaluate effects of harvest and changes in habitat for exploited and endangered fish populations. In many cases, the proportion of the population or stock that is captured (catchability or capture probability) is unknown but is often assumed to be constant over space and time. We used data from a large-scale mark-recapture study to evaluate the extent of spatial and temporal variation, and the effects of fish density, fish size, and environmental covariates, on the capture probability of rainbow trout (Oncorhynchus mykiss) in the Colorado River, AZ. Estimates of capture probability for boat electrofishing varied 5-fold across five reaches, 2.8-fold across the range of fish densities that were encountered, 2.1-fold over 19 trips, and 1.6-fold over five fish size classes. Shoreline angle and turbidity were the best covariates explaining variation in capture probability across reaches and trips. Patterns in capture probability were driven by changes in gear efficiency and spatial aggregation, but the latter was more important. Failure to account for effects of fish density on capture probability when translating a historical catch per unit effort time series into a time series of abundance, led to 2.5-fold underestimation of the maximum extent of variation in abundance over the period of record, and resulted in unreliable estimates of relative change in critical years. Catch per unit effort surveys have utility for monitoring long-term trends in relative abundance, but are too imprecise and potentially biased to evaluate population response to habitat changes or to modest changes in fishing effort.

Fisheries Research↗
USGS2025

The Center for the Advancement of Population Assessment Methodology (CAPAM): A perspective on the first 10 years

The Center for the Advancement of Population Assessment Methodology (CAPAM) was established in 2013, envisioned as an institute that could conduct, organize, and communicate stock assessment research with the aim of benefiting fisheries assessment efforts internationally. CAPAM’s activities have focused on its workshop series and consequent special issues in Fisheries Research . The information generated through CAPAM and its permanent recording as journal articles has greatly benefited the stock assessment community and can potentially contribute to modelling in general. We discuss what has made CAPAM successful, its future, and what could be done to reach the ultimate goal of producing a good practices guide for fisheries stock assessment.

Fisheries Research↗
USGS2018

Leaf to landscape responses of giant sequoia to hotter drought: An introduction and synthesis for the special section

Hotter droughts are becoming more common as climate change progresses, and they may already have caused instances of forest dieback on all forested continents. Learning from hotter droughts, including where on the landscape forests are more or less vulnerable to these events, is critical to help resource managers proactively prepare for the future. As part of our Leaf to Landscape Project, we measured the response of giant sequoia, the world’s largest tree species, to the extreme 2012–2016 hotter drought in California. The project integrated leaf-level physiology measurements, crown-level foliage dieback surveys, and remotely sensed canopy water content (CWC) to shed light on mechanisms and spatial patterns in drought response. Here we summarize initial findings, present a conceptual model of drought response, and discuss management implications; details are presented in the other four articles of the special section on Giant Sequoias and Drought. Giant sequoias exhibited both leaf- and canopy-level responses that were effective in protecting whole-tree hydraulic integrity for the vast majority of individual sequoias. Very few giant sequoias died during the drought compared to other mixed conifer tree species; however, the magnitude of sequoia drought response varied across the landscape. This variability was partially explained by local site characteristics, including variables related to site water balance . We found that low CWC is an indicator of recent foliage dieback, which occurs when stress levels are high enough that leaf-level adjustments alone are insufficient for giant sequoias to maintain hydraulic integrity. CWC or change in CWC may be useful indicators of drought stress that reveal patterns of vulnerability to future hotter droughts. Future work will measure recovery from the drought and strengthen our ability to interpret CWC maps. Our ultimate goal is to produce giant sequoia vulnerability maps to help target management actions, such as reducing other stressors, increasing resistance to hotter drought through prescribed fire or mechanical thinning, and planting sequoias in projected future suitable habitat, which may occur outside current grove distributions. We suggest that managers compare different types of vulnerability assessments and combine vulnerability maps with other sources of information to inform decisions.

California↗
USGS2008

A second look at western Sinai seif dunes and their lateral migration

Tsoar et al. [Tsoar, H., Blumberg, D.G., Stoler, Y., 2004. Elongation and migration of sand dunes. Geomorphology 57, 293-302.] reported that seif dunes in the western Sinai Desert did not migrate laterally between 1973 and 1999. If the planform sinuosities of the dunes are removed by filtering, spatial averaging, or linear regression, however, it is evident that the dunes did, in fact, migrate laterally roughly 13??m during this 26-year period. The measured migration distance is 1-2 orders of magnitude greater than the rms co-registration error Tsoar et al. determined for the first and last air photos that were used to map the dunes. The western Sinai dunes provide another example demonstrating that linear dunes can migrate laterally, and they illustrate some of the difficulties in documenting systematic lateral motion. Lateral migration of a dune can be important geologically or geomorphologically, even where migration is too slow to detect from repeated topographic surveys. This article explains the wind conditions for the lateral migration of seif dunes in western Sinai and the possible wind occurrences that would not lead to such a migration.

Geomorphology↗
USGS2017

Inland fisheries – Invisible but integral to the UN Sustainable Development Agenda for ending poverty by 2030

The United Nations’ (UN) 2030 Agenda for Sustainable Development defines the formidable challenge of integrating historically separate economic, social, and environmental goals into a unified ‘plan of action for people, planet, and prosperity.’ We highlight the substantial contribution inland fisheries can make towards preventing increased poverty and, in some cases, alleviating poverty (i.e. addressing Sustainable Development Goal [SDG] 1: No Poverty) as an opportunity to inform the next set of development agendas and their associated budgets and priorities. Overlooking the contribution of inland fisheries to poverty prevention and alleviation may undermine the capacity to successfully meet the development goals, especially in rural communities in Low-Income Food-Deficit countries. Inland fisheries are essential for food and economic security as the vast majority are small-scale operations or subsistence, predominantly used by poorer groups. Protecting inland fisheries from diverse threats from other water users and associated sectors requires robust, multi-sectoral, and multinational policies that can be brought about by global initiatives like the SDGs. Without such protection, their vital contribution towards sustainable livelihoods and poverty issues becomes uncertain. Further, integrating inland fisheries into sustainable development frameworks strengthens the likelihood of achieving the UN Agenda for Sustainable Development. In this perspective article, we posit that including inland fisheries in national policy statements and programs can prove beneficial to promoting economic and social growth for the poor, preventing further poverty, and achieving SDG 1 and other SDG targets, especially those related to food security.

Global Environmental Change↗
USGS2021

Domoic acid and saxitoxin in seabirds in the United States between 2007 and 2018

As harmful algal blooms (HABs) increase in magnitude and duration worldwide, they are becoming an expanding threat to marine wildlife. Over the past decade, blooms of algae that produce the neurotoxins domoic acid (DA) and saxitoxin (STX) and documented concurrent seabird mortality events have increased bicoastally in the United States. We conducted a retrospective analysis of HAB related mortality events in California, Washington, and Rhode Island between 2007 and 2018 involving 12 species of seabirds, to document the levels, ranges, and patterns of DA and STX in eight sample types (kidney, liver, stomach, intestinal, cloacal, cecal contents, bile, blood) collected from birds during these events. Samples ( n = 182 ) from 83 birds were examined for DA ( n = 135) or STX ( n = 17) or both toxins simultaneously ( n = 30), using ELISA or LCMS at the National Oceanographic and Atmospheric Administration, National Marine Fisheries Service (NOAA-NMFS) Wildlife Algal-toxin Research and Response Network (WARRN-West) or the University of California, Santa Cruz (UCSC). DA or STX was detected in seven of the sample types with STX below the minimum detection limit in blood for the three samples tested. DA was found in 70% and STX was found in 23% of all tested samples. The ranges of detectable levels of DA and STX in all samples were 0.65–681,190.00 ng g −1 and 2.00–20.95 ng g −1 , respectively. Cloacal contents from a Pacific loon ( Gavia pacifica ) collected in 2017 from Ventura County, California, had the highest maximum level of DA for all samples and species tested in this study. The highest level of STX for all samples and species was detected in the bile of a northern fulmar ( Fulmarus glacialis ) collected in 2018 from San Luis Obispo County, California. DA detections were consistently found in gastrointestinal samples, liver, bile, and kidney, whereas STX detections were most frequently seen in liver and bile samples. Co-occurring HAB toxins (DA and STX) were detected in white-winged scoters ( Melanitta deglandi ) in 2009, a Brandt's cormorant ( Phalacrocorax penicillatus ) in 2015, and a northern fulmar and common murre ( Uria aalge ) in 2018. This article provides DA and STX tissue concentrations and patterns in avian samples and shows the utility of various sample types for the detection of HAB toxins. Future research to understand the pharmacodynamics of these toxins in avian species and to establish lethal doses in various bird species would be beneficial.

Harmful Algae↗
USGS2022

Multi-hazard risk analysis for the U.S. Department of the Interior: An integration of expert elicitation, planning priorities, and geospatial analysis

An integral part of disaster risk management is identifying and prioritizing hazards and their potential impacts in a meaningful way to support risk-reduction planning. There has been considerable use and subsequent criticism of threat prioritization efforts that simply compare likelihoods and consequences of plausible threats. This article summarizes a new mixed-methods and scalable approach for prioritizing risks in a multi-hazard, multi-objective, and multi-criteria organizational context. This approach integrates (1) hazard characterizations using subject-matter-expert (SME) elicitation, (2) expressed preferences in planning priorities provided by emergency managers, and (3) quantitative estimates of asset exposure to hazards using geospatial data and geographic-information-systems (GIS) software. We demonstrate this approach with a case study designed to support multi-hazard mitigation and response planning done by the U.S. Department of the Interior (DOI) Office of Emergency Management, which required a national understanding of the risks posed by 75 natural, technological, and adversarial hazards to DOI managed and administered lands, facilities, people, revenues, and resources. Results demonstrate that hazard priorities vary depending on the asset, scale, and risk-management context, thereby making the case that “one-size-fits-all” hazard rankings have limited utility or relevance to real-world, risk mitigation and response planning. Our results suggest that recognizing the risk-management context provides greater transparency, flexibility, and relevance in comparing threats than traditional likelihood-threat matrices or the use of hazard SMEs to decide for planners which hazard scenarios are emphasized in risk planning.

International Journal of Disaster Risk Reduction↗