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At least 487 records · Page 27Linked to original sources
USGS2010

Biological pathways of exposure and ecotoxicity values for uranium and associated radionuclides: Chapter D in Hydrological, geological, and biological site characterization of breccia pipe uranium deposits in Northern Arizona

This chapter compiles available chemical and radiation toxicity information for plants and animals from the scientific literature on naturally occurring uranium and associated radionuclides. Specifically, chemical and radiation hazards associated with radionuclides in the uranium decay series including uranium, thallium, thorium, bismuth, radium, radon, protactinium, polonium, actinium, and francium were the focus of the literature compilation. In addition, exposure pathways and a food web specific to the segregation areas were developed. Major biological exposure pathways considered were ingestion, inhalation, absorption, and bioaccumulation, and biota categories included microbes, invertebrates, plants, fishes, amphibians, reptiles, birds, and mammals. These data were developed for incorporation into a risk assessment to be conducted as part of an environmental impact statement for the Bureau of Land Management, which would identify representative plants and animals and their relative sensitivities to exposure of uranium and associated radionuclides. This chapter provides pertinent information to aid in the development of such an ecological risk assessment but does not estimate or derive guidance thresholds for radionuclides associated with uranium. Previous studies have not attempted to quantify the risks to biota caused directly by the chemical or radiation releases at uranium mining sites, although some information is available for uranium mill tailings and uranium mine closure activities. Research into the biological impacts of uranium exposure is strongly biased towards human health and exposure related to enriched or depleted uranium associated with the nuclear energy industry rather than naturally occurring uranium associated with uranium mining. Nevertheless, studies have reported that uranium and other radionuclides can affect the survival, growth, and reproduction of plants and animals. Exposure to chemical and radiation hazards is influenced by a plant’s or an animal’s life history and surrounding environment. Various species of plants, invertebrates, fishes, amphibians, reptiles, birds, and mammals found in the segregation areas that are considered species of concern by State and Federal agencies were included in the development of the site-specific food web. The utilization of subterranean habitats (burrows in uranium-rich areas, burrows in waste rock piles or reclaimed mining areas, mine tunnels) in the seasonally variable but consistently hot, arid environment is of particular concern in the segregation areas. Certain species of reptiles, amphibians, birds, and mammals in the segregation areas spend significant amounts of time in burrows where they can inhale or ingest uranium and other radionuclides through digging, eating, preening, and hibernating. Herbivores may also be exposed though the ingestion of radionuclides that have been aerially deposited on vegetation. Measured tissues concentrations of uranium and other radionuclides are not available for any species of concern in the segregation areas. The sensitivity of these animals to uranium exposure is unknown based on the existing scientific literature, and species-specific uranium presumptive effects levels were only available for two endangered fish species known to inhabit the segregation areas. Overall, the chemical toxicity data available for biological receptors of concern were limited, although chemical and radiation toxicity guidance values are available from several sources. However, caution should be used when directly applying these values to northern Arizona given the unique habitat and life history strategies of biological receptors in the segregation areas and the fact that some guidance values are based on models rather than empirical (laboratory or field) data. No chemical toxicity information based on empirical data is available for reptiles, birds, or wild mammals; therefore, the risks associated with uranium and other radionuclides are unknown for these biota.

Arizona↗
USGS2009

The effects of enhanced zinc on spatial memory and plaque formation in transgenic mice

There is considerable evidence suggesting that metals play a central role in the pathogenesis of Alzheimer's disease. Reports suggest that elevated dietary metals may both precipitate and potentiate an Alzheimer's disease phenotype. Despite this, there remain few studies that have examined the behavioral consequences of elevated dietary metals in wild type and Alzheimer's disease animals. To further investigate this in the current study, two separate transgenic models of AD (Tg2576 and TgCRND8), together with wild type littermates were administered 10 ppm (0.153 mM) Zn. Tg2576 animals were maintained on a zinc-enriched diet both pre- and postnatally until 11 months of age, while TgCRND8 animals were treated for five months following weaning. Behavioral testing, consisting of "Atlantis" and "moving" platform versions of the Morris water maze, were conducted at the end of the study, and tissues were collected for immunohistochemical analysis of amyloid-β burden. Our data demonstrate that the provision of a zinc-enriched diet potentiated Alzheimer-like spatial memory impairments in the transgenic animals and was associated with reduced hippocampal amyloid-β plaque deposits. Zinc-related behavioral deficits were also demonstrated in wild type mice, which were sometimes as great as those present in the transgenic animals. However, zinc-related cognitive impairments in transgenic mice were greater than the summation of zinc effects in the wild type mice and the transgene effects.

Journal of Alzheimer's Disease↗
USGS2023

Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States

Onchocerca lupi (Rodonaja, 1967) is an understudied, vector-borne, filarioid nematode that causes ocular onchocercosis in dogs, cats, coyotes, wolves, and is also capable of infecting humans. Onchocercosis in dogs has been reported with increasing incidence worldwide. However, despite the growing number of reports describing canine O. lupi cases as well as zoonotic infections globally, the disease prevalence in endemic areas and vector species of this parasite remains largely unknown. Here, our study aimed to identify the occurrence of O. lupi infected dogs in northern Arizona, New Mexico, and Utah, United States and identify the vector of this nematode. A total of 532 skin samples from randomly selected companion animals with known geographic locations within the Navajo Reservation were collected and molecularly surveyed by PCR for the presence of O. lupi DNA (September 2019–June 2022) using previously published nematode primers (COI) and DNA sequencing. O. lupi DNA was detected in 50 (9.4%) sampled animals throughout the reservation. Using positive animal samples to target geographic locations, pointed hematophagous insect trapping was performed to identify potential O. lupi vectors. Out of 1,922 insects screened, 38 individual insects and 19 insect pools tested positive for the presence of O. lupi, all of which belong to the Diptera family. This increased surveillance of definitive host and biological vector/intermediate host is the first large scale prevalence study of O. lupi in companion animals in an endemic area of the United States, and identified an overall prevalence of 9.4% in companion animals as well as multiple likely biological vector and putative vector species in the southwestern United States. Furthermore, the identification of these putative vectors in close proximity to human populations coupled with multiple, local zoonotic cases highlight the One Health importance of O. lupi .

Arizona, New Mexico↗
USGS2021

An opportunistic survey reveals an unexpected coronavirus diversity hotspot in North America

In summer 2020, Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) was detected on mink farms in Utah. An interagency One Health response was initiated to assess the extent of the outbreak and included sampling animals from on or near affected mink farms and testing them for SARS-CoV-2 and non-SARS coronaviruses. Among the 365 animals sampled, including domestic cats, mink, rodents, raccoons, and skunks, 261 (72%) of the animals harbored at least one coronavirus. Among the samples that could be further characterized, 127 alphacoronaviruses and 88 betacoronaviruses (including 74 detections of SARS-CoV-2 in mink) were identified. Moreover, at least 10% ( n = 27) of the coronavirus-positive animals were found to be co-infected with more than one coronavirus. Our findings indicate an unexpectedly high prevalence of coronavirus among the domestic and wild free-roaming animals tested on mink farms. These results raise the possibility that mink farms could be potential hot spots for future trans-species viral spillover and the emergence of new pandemic coronaviruses.

Utah↗
USGS2012

Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study

Telemetry has been used to answer various questions associated with research, management, and monitoring programs and to monitor animal behavior and population dynamics throughout the world. Many telemetry projects have been developed to study the passage, behavior, and survival of migrating adult and juvenile salmonids at hydroelectric projects on the mainstem Columbia and Snake rivers (Skalski et al. 2001a, 2001b; Skalski et al. 2002; Keefer et al. 2004; Goniea et al. 2006; Plumb et al. 2006). Telemetry based field evaluations of the survival of salmon through hydroelectric projects are costly because of the technology (tags, telemetry systems, infrastructure, etc.) and personnel required to conduct the evaluations. Given the cost of implementing these projects, and the financial and conservation implications of the decisions made from the research results (e.g., forgone electricity production and conservation of threatened and endangered animals), ensuring quality data are collected by documenting all procedures, training, data checks, and that sound protocols and quality assurance and control procedures are in place is paramount. Telemetry studies can pose unique data collection, processing, and analysis challenges. For instance, inferences about entire populations of animals are made from study animals that are captured, held, and tagged at disparate locations. Consequently great care must be taken to ensure that any potential biases that could arise from field procedures must be minimized (Peven et al. 2005). Interrogations of released study animals are remotely conducted by telemetry systems throughout the study area. The continuous recording of telemetry systems can result in large numbers of detections over a short time frame and the potential for false positive detections from records that are weak or erroneous. Thus, there is the potential to generate large data sets (many thousands of lines) that require significant postprocessing. Data reduction can be done using software or programming code within a software package or manually to discern noise from valid data and pull out the pertinent information for analysis. In either case, consistent well-documented procedures need to be in place to ensure quality results and allow for repeatability of study methods.

Book chapter↗
USGS1973

Pesticide residues in birds and mammals

SUMMARY: Residues of organochlorine pesticides and their breakdown products are present in the tissues of essentially all wild birds throughout the world. These chemicals accumulate in fat from a relatively small environmental exposure. DDE and dieldrin are most prevalent. Others, such as heptachlor epoxide, chlordane, endrin, and benzene hexachloride also occur, the quantities and kinds generally reflecting local or regional use. Accumulation may be sufficient to kill animals following applications for pest control. This has occurred in several large-scale programmes in the United States. Mortality has also resulted from unintentional leakage of chemical from commercial establishments. Residues may persist in the environment for many years, exposing successive generations of animals. In general, birds that eat other birds, or fish, have higher residues than those that eat seeds and vegetation. The kinetic processes of absorption, metabolism, storage, and output differ according to both kind of chemical and species of animal. When exposure is low and continuous, a balance between intake and excretion may be achieved. Residues reach a balance at an approximate animal body equilibrium or plateau; the storage is generally proportional to dose. Experiments with chickens show that dieldrin and heptachlor epoxide have the greatest propensity for storage, endrin next, then DDT, then lindane. The storage of DDT was complicated by its metabolism to DDE and DDD, but other studies show that DDE has a much greater propensity for storage than either DDD or DDT. Methoxychlor has little cumulative capacity in birds. Residues in eggs reflect and parallel those in the parent bird during accumulation, equilibrium, and decline when dosage is discontinued. Residues with the greatest propensity for storage are also lost most slowly. Rate of loss of residues can be modified by dietary components and is speeded by weight loss of the animal. Under sublethal conditions of continuous exposure to an organochlorine pesticide, the concentrations of residues in the different tissues are ordinarily directly correlated with each other. When the dosage is at lethal levels, or when stored residues are mobilised to lethal levels, the balanced relationship is disrupted. The concentrations of residues in the brain provide the most rigorous criteria for diagnosis of death due to these chemicals, and levels are generally similar across a wide range of species of birds and mammals. Residues in liver are closely correlated with recent dose, either from direct intake or from mobilisation from storage, and so reflect hazardous exposure. Residues in the whole carcass show the storage reserve, and so indicate the potential for adverse effects from lethal mobilisation or from the continuous slow mobilisation that occurs during the normal processes of metabolism and excretion. A synchronous, rapid, and widespread decline in weight and thickness of shells of eggs laid by many species of wild birds occurred in the late 1940's and has persisted. Birds of prey were primarily affected; exceptions apparently are the result of lesser exposure because of different food habits. Many species of fish-eating birds are also affected. Others, however, appear to be more resistant and to accumulate much higher residues before shell-thinning occurs. Seed-eating birds do not appear to have been generally affected; their exposure is ordinarily lower, but physiological factors also seem to be involved. A relationship between shell-thinning and population decline has been established for many species. In exceptional cases, such as the herring gull, persistent re-nesting and other population reactions have overcome adverse effects at the population level. The discovery of shell-thinning among natural populations, and the hypothesis that this thinning was related to the occurrence of organochlorine pesticides, stimulated experimental studies to determine wheth

Book chapter↗
USGS1975

Some effects of pollutants in terrestrial ecosystems

Summary: Pollutants tend to simplify plant and animal communities by causing a progressive loss of species. At the extreme, this leads to erosion and loss of soil fertility. Weedy, broadly adapted species increase. Among animals, carnivorous species and groups are often the first to suffer. This is partly because of their exposure at the top of the food chain, and partly, it appears, because of physiological differences. Species differences in susceptibility are abundant and are often critical. One result is that when one pest is controlled another is likely to flare up. Resistance appears commonly in insects and is known in other fast-breeding forms, including fishes, frogs, and rodents. Resistant individuals can carry toxicant loads that make them dangerous food for other animals. Some groups, including mollusks and annelids, are naturally resistant to many organohalogens and tend to accumulate them. Animals such as birds may carry lipophilic pollutants in large amounts with apparent safety until forced to draw upon their fat. They may then suffer delayed mortality, and no doubt suffer reproductive or behavioral effects at sublethal levels. Lipophilic pollutants in the brain rise when body lipids decrease and fall when body lipids increase. Mutagenesis can be caused by some common pollutants and the mutagenic properties of most chemicals are far too little known. Fortunately, common pesticides are not likely to be strong mutagens. Mutagenicity may be affecting certain long-lived and slow-breeding species in the wild, but most species have enough population turnover to swamp an occasional mutagenic event. Behavioral changes can be caused by relatively low levels of contaminants, but it is often hard to demonstrate them without using high dosages. Reproduction may or may not be affected adversely by low exposures. At certain exposures that are below the toxic levels of a chemical, a biostimulatory effect is to be expected. Food chain accumulations definitely do occur when persistent chemicals enter organisms that eliminate them poorly. However, loss of chemicals in the food chain must be more common than accumulation. The great concentration from water to aquatic organism is chiefly a physical phenomenon, not a food chain effect, but it affords high starting levels for these chains. Terrestrial food chains often start at a high level with heavily contaminated, struggling prey. Litter feeders are another important base. Vegetation may be contaminated enough to be dangerous to animals that eat it. Dermal and respiratory routes of intoxication occur in the wild, but the oral route is far more important at most times and places. The organisms that govern soil fertility and texture are affected more by cultivation than by pesticides. Above ground, growing knowledge of resistance, species differences, and biological controls is leading to integrated control, in which use of chemicals is limited and specific. We do not know what is happening to most nontarget invertebrates. Amphibians and reptiles may be killed by applications of insecticides, but are not highly sensitive and can carry large residues. Effects of these residues on reproduction are little known. Heavy kills of birds by pesticides still occur in the field. Fish-eating and bird-eating birds also undergo shell thinning and related reproductive troubles in many areas, sometimes to the point of population decline and local or regional extermination. DDE most often correlates with shell thinning in the wild and in experiments. No other known chemical approaches DDE in causing severe and lasting shell thinning. Herbivorous birds seem to be largely immune to this effect. It is uncertain how much dieldrin and PCBs contribute to embryotoxicity in carnivorous birds. Mammals may be killed by the more toxic pesticides, but some of the commonest small rodents are so resistant, and lose their residues so rapidly, that they are of little

Book chapter↗
USGS1980

The natural food habits of grizzly bears in Yellowstone National Park, 1973-74

The natural food habits of grizzly bears ( Ursus arctos horribilis Ord) in Yellowstone National Park were investigated in 1973-74 to identify the grizzly's energy sources and trophic level(s), nutrient use, and distribution. Food consumption was determined by scat analysis and field observations. Food quality and digestibility were estimated by chemical analysis. Grizzlies were distributed in 3 distinctive feeding economies: valley / plateau , a grass/rodent economy where grizzlies were intensive diggers; mountain , primarily a grass/springbeauty/root economy where grizzlies were casual diggers; and lake , primarily a fish/grass economy where grizzlies were fishers. The economies occurred in areas with fertile soils; distribution of bears within each was related to the occurrence of succulent plants. The feeding cycle in the valley/plateau and mountain economies followed plant phenology. Grizzlies fed primarily on meat before green-up and on succulent herbs afterwards; meat, corms, berries, and nuts became important during the postgrowing season. Succulent grasses and sedges with an importance value percentage of 78.5 were the most important food items consumed. Protein from animal tissue was more digestible than protein from plant tissue. Storage fats were more digestible than structural fats. Food energy and digestibility were directly related. Five principle nutrient materials (listed with their percentage digestibilities) contributed to total energy intake: protein from succulent herbs, 42.8; protein and fat from animal material, 78.1; fat and protein from pine nuts, 73.6; starch, 78.8; and sugar from berries and fruits, digestibility undetermined. Protein from succulent herbs, with a nutritive value percentage of 77.3, was the grizzlies' primary energy source. Because succulent, preflowering herbs had higher protein levels than dry, mature herbs, grizzly use of succulent herbs guaranteed them the highest source of herbaceous protein. Low protein digestibility of succulent herbs was compenstated for by high intake. Grizzlies were digestively flexible and maximized use of protein from plant and animal sources. They were adapted to the most constant and abundant sources of protein: succulent herbs and animal material from open, fertile grasslands. Competition among grizzlies for animal food during the pregrowing season may be regulatory for the grizzly population. The grizzly population level can be partially accounted for by the grizzlies' status as secondary consumers during pregreen-up periods and primary consumers during the growing and postgrowing seasons. The essential environmental requirement was the availability of fertile grasslands and herblands interspersed with cover and capable of maintaining artiodactyls, rodents, and abundant nutritious herbs as sources of food.

Yellowstone National Park↗
USGS1981

Food of the Pacific white-sided dolphin, Lagenorhynchus obliquidens, Dall's porpoise, Phocoenoides dalli, and northern fur seal, Callorhinus ursinus, off California and Washington

Our knowledge of the feeding habits of the Pacific white-sided dolphin, Lagenorhynchus obliquidens , and the Dall's porpoise, Phocoenoides dalli , is based on examination of the stomach contents of stranded animals, animals accidentally taken in commercial fishing gear, those taken in the western Pacific commercial fishery, and animals that died during capture attempts. Of these only a few were normally feeding animals taken at sea, whose stomach contents were thoroughly examined. Fished and squids previously identified from stomachs of dolphins and porpoises by various investigators are listed in Table 1. This paper documents the stomach contents of 44 Pacific white-sided dolphin and 9 Dall's porpoise collected at sea off California and Washington. All animals were collected by the authors during pelagic fur seal studies with the exception of three dolphins which were collected by a staff biologist during whale research voyages off California. Comparisons of stomach contents are made between the Pacific white-sided dolphins, Dall's porpoise, and northern fur seal, Callorhinus ursinus , collected near the same locations and usually on the same day. Mention of the dolphin, porpoise , and seal in this paper refers to the above-named species unless noted otherwise.

California, Washington↗
USGS1992

Food preferences of spring-migrating blue-winged teal in southwestern Louisiana

We studied effects of pair status, molt intensity, and year on food selection by migrating male blue-winged teal (Anas discors) in southwestern Louisiana during springs 1990 and 1991. Diets consisted primarily of animal foods; but plant material, consisting mostly of seeds, comprised as much as 44%. There was no difference in animal food consumption by paired and unpaired males; however, the proportion of animal material in the male diet was greater in 1990 than in 1991. Animal food consumption was not positively correlated with mean molt intensity. Food preferences of paired and unpaired males were similar in both years. Animal foods, especially benthos and organisms associated with vegetative substrates, were preferred to seeds and freeswimming invertebrates. We recommend that habitat management for spring-migrating blue-winged teal focus on production of invertebrates, especially long-lived forms such as dragonflies, hemipterans (except water boatmen), midges, and other dipterans.

Louisiana↗
USGS2022

Antibiotic resistance in free-ranging wildlife

In this chapter, we provide an overview of antimicrobial resistant (AMR) bacteria in wildlife through the presentation of general trends of occurrence among both captive and free-ranging wild animal populations, discussion of importance to human health and wildlife conservation, and identification of priority areas for future research and monitoring efforts. Once most commonly identified in humans and domestic animals, AMR bacteria have now been reported to be widespread among free-ranging and captive wildlife and the broader environment. Antimicrobial resistance has been identified in wildlife inhabiting nearly every country, region, and habitat type from which samples have been obtained, although occurrence may be more common in animals that occupy anthropogenically impacted environments. Though AMR bacteria identified in free-ranging wildlife have generally not been associated with direct health impacts to the host, specific bacteria and types of resistance found in wildlife may be clinically relevant to humans. Furthermore, AMR bacteria harbored by captive or free-ranging animals may complicate veterinary treatment of captive, rare, or vulnerable wildlife provided care. Future investigations may obtain important information on the acquisition and dissemination of AMR bacteria by wildlife through the comparison of resistance harbored by bacteria from wildlife and the environments they occupy. The identification of specific environmental pathways through which resistance may be acquired would help to guide the development of intervention strategies to interrupt further spread of antimicrobial resistance to, from, and among wildlife. Implications of such strategies may also extend more broadly to promote domestic animal, human, and environmental health.

Book chapter↗
USGS2002

A critique of wildlife radio-tracking and its use in National Parks: a report to the National Park Service

Because of the naturalness of National Parks and because of the public’s strong interest in the parks, the National Park Service (NPS) must gather as much information as needed to help understand and preserve the natural functioning of its ecosystems, and especially of its wildlife. The most useful technique for studying wildlife is radio-tracking, or wildlife telemetry. Radio-tracking is the technique of determining information about an animal through the use of radio signals from or to a device carried by the animal. The basic components of a traditional radio-tracking system are (1) a transmitting subsystem consisting of a radio transmitter, a power source and a propagating antenna, and (2) a receiving subsystem including a “pick-up” antenna, a signal receiver with reception indicator (speaker and/or display) and a power source. Most radio tracking systems involve transmitters tuned to different frequencies (analogous to different AM/FM radio stations) that allow individual identification. Three distinct types of radio-tracking are in use today: (1)conventional, very-high-frequency (VHF) radio tracking, (2) satellite tracking, and (3) Global Positioning System (GPS) tracking. VHF radio-tracking is the standard technique that has been in use since 1963. However, radio-tracking can be considered intrusive in that it requires live-capturing animals and attaching a collar or other device to them. A person must then monitor signals from the device, thus usually requiring people in the field in vehicles, aircraft, and on foot. Nevertheless, most national parks have recognized the benefits of radio-tracking and have hosted radio-tracking studies for many years; in some parks, hundreds of animals have been, or are being, so studied. As a result, some NPS staff are concerned about actual or potential intrusiveness of radio-tracking. Ideally, wildlife studies would still be done but with no intrusion on animals or conflict with park visitors. Thus the NPS has decided to closely examine the technique and use of radio-tracking to determine (1) if any less-intrusive method could supply the same information, (2) what the full range of radio-tracking technology is, to determine if the least-intrusive techniques are being used, and (3) whether future technological improvements might lead to less-intrusive techniques. The present review is the result. We first present a simple overview of radio-tracking technology, its benefits, variety, cost, and availability, advantages and disadvantages, and recent refinements that, if used, could reduce research intrusiveness. Then we consider whether any less-intrusive, non-radio-tracking techniques could supply the same information. Next we discuss possible future improvements and suggest some that would help reduce intrusion during wildlife research in national parks. Last, we review radio-tracking technology in detail for readers who want a more complete understanding. This review should also allow administrators and scientists to determine whether the least-intrusive radio-tracking techniques are currently being used. We conclude that no substitute for radio-tracking appears to be on the horizon but that a few recent improvements in the technology can reduce some of its intrusiveness. Further, we recommend that the NPS (1) formally assess the extent of park visitors’ perceptions and concerns about any intrusiveness caused by wildlife radio-tracking studies (2) help minimize visitor concern about the technique by educating the public about radio-tracking and some of its findings in the parks, (3) promote use of the most up-to-date refinements and improvements in radio-tracking technology, and (4) encourage funding projects using such technology.

Report↗
USGS2016

A semelparous fish continues upstream migration when exposed to alarm cue, but adjusts movement speed and timing

Animals make trade-offs between predation risk and pursuit of opportunities such as foraging and reproduction. Trade-offs between antipredator behaviours and foraging are well suited to manipulation in laboratory and field settings and have generated a vast compendium of knowledge. However, much less is known about how animals manage trade-offs between predation risk and pursuit of reproductive opportunities in the absence of the confounding effects of foraging. In the present study, we investigated how the nonfeeding migratory life stage of sea lamprey, Petromyzon marinus , responds to odour from dead conspecifics (a cue that induces avoidance behaviours in laboratory and field studies). We released groups of PIT-tagged sea lamprey 65 m from the shore of Lake Michigan or 287 m upstream in Carp Lake River and used antennas to detect their movements in the river. As the breeding season progressed, sea lamprey initiated upstream movement earlier and were more likely to enter the river. Sea lamprey that began the night in Lake Michigan entered Carp Lake River at higher rates and accelerated upstream when exposed to high concentrations of alarm cue, consistent with animals attempting to minimize time spent in risky areas. Sea lampreys that began the night in the river delayed upstream movement when exposed to alarm cue, consistent with animals sheltering and gathering information about a source of risk. We attribute this context-specific reaction to alarm cue to differences in perceived vulnerability to predation in sheltered positions in the river versus exposed positions in the lake. Once in the river, the vast majority of sea lamprey moved upstream independent of alarm cue or Julian date. Although life-history-induced time and energy budgets place rigid constraints on the direction of migration, sea lamprey attend to predation risk by modifying movement timing and speed.

Animal Behaviour↗
USGS2006

The use of photographic rates to estimate densities of tigers and other cryptic mammals: a comment on misleading conclusions

The search for easy-to-use indices that substitute for direct estimation of animal density is a common theme in wildlife and conservation science, but one fraught with well-known perils (Nichols & Conroy, 1996; Yoccoz, Nichols & Boulinier, 2001; Pollock et al., 2002). To establish the utility of an index as a substitute for an estimate of density, one must: (1) demonstrate a functional relationship between the index and density that is invariant over the desired scope of inference; (2) calibrate the functional relationship by obtaining independent measures of the index and the animal density; (3) evaluate the precision of the calibration (Diefenbach et al., 1994). Carbone et al. (2001) argue that the number of camera-days per photograph is a useful index of density for large, cryptic, forest-dwelling animals, and proceed to calibrate this index for tigers (Panthera tigris). We agree that a properly calibrated index may be useful for rapid assessments in conservation planning. However, Carbone et al. (2001), who desire to use their index as a substitute for density, do not adequately address the three elements noted above. Thus, we are concerned that others may view their methods as justification for not attempting directly to estimate animal densities, without due regard for the shortcomings of their approach.

Animal Conservation↗
USGS2023

Integrated analysis shows how the effects of extreme flooding events propagate through fish communities to impact amphibians

Research Highlight: Davis, C. L., Walls, S. C., Barichivich, W. J., Brown, M. E., & Miller, D. A. (2022). Disentangling direct and indirect effects of extreme events on coastal wetland communities. Journal of Animal Ecology , https://doi.org/10.1111/1365-2656.13874 . Catastrophic events such as floods, hurricanes, winter storms, droughts and wildfires increasingly touch our lives either directly or indirectly. These events draw our attention to the seriousness of changes in climate not only to human well-being but also to the integrity of ecological systems upon which we depend. Understanding the impacts of extreme events on ecological systems requires the ability to characterize the cascading effects of environmental changes on the environments in which organisms live and the altered biological interactions produced. This scientific ambition represents no small challenge for the study of animal communities, which are typically difficult to census as well as dynamic in time and space. Davis et al. (2022) in a recent study in the Journal of Animal Ecology examined the amphibian and fish communities found in depressional coastal wetlands to better understand how they respond to major rainfall and flooding events. Data from the U.S. Geological Survey's Amphibian Research and Monitoring Initiative provided an 8-year record of observations as well as environmental measurements. For this study, the authors integrated techniques for assessing the dynamics of animal populations with a Bayesian implementation of structural equation modelling. Using their integrated methodological approach permitted the authors to reveal the direct and indirect effects of extreme weather events on co-occurring amphibian and fish communities while accounting for observational uncertainty and temporal variation in population-level processes. Their findings indicate that the most prominent effects of flooding on the amphibian community were caused by changes in the fish community that led to increased predation and resource competition. In their conclusions, the authors emphasize the importance of understanding networks of abiotic and biotic effects if we are to predict and mitigate the influence of extreme weather events.

Journal of Animal Ecology↗
USGS1999

Pyometra in a Siberian Polecat (Mustela eversmanni)

A 2-year-old Siberian polecat (Mustela eversmanni) from a breeding colony presented for ultrasound evaluation for pregnancy. It was paired with a male for 2.75 months and had remained absent of pregnancy signs when it was anesthetized and clinically evaluated. Until this time, the animal had eaten well and shown no outward signs of debility. On palpation, the animal had a fluid-filled tubular structure in the caudal abdomen, consistent in location and size with the uterus. No sign of vaginal discharge was present. Ultrasonography revealed 10 fluid-filled evaginations (approximately 12 mm in diameter) of the uterine horns. A presumptive diagnosis of a fluid-filled reproductive tract and likely reproductive failure was made in light of the animal's history, its clinical signs, and the ultrasound findings. Euthanasia was performed because the animal was nonreproductive and might yield information relevant to the breeding colony as a whole. Necropsy of the polecat revealed a distended fluctuant uterus containing mildly odiferous, thick, yellow-green, purulent material. Histopathology confirmed the diagnosis of pyometra. A pure and heavy growth of Enterococcus fecalis was cultured from the uterine contents. In light of results from routine minimal inhibitory concentration antibiotic sensitivity screening, this isolate was resistant to all antibiotics tested in the standard teaching hospital screen.

Contemporary Topics in Laboratory Animal Science↗
USGS2023

Hidden Markov movement models reveal diverse seasonal movement patterns in two North American ungulates

Animal movement is the mechanism connecting landscapes to fitness, and understanding variation in seasonal animal movements has benefited from the analysis and categorization of animal displacement. However, seasonal movement patterns can defy classification when movements are highly variable. Hidden Markov movement models (HMMs) are a class of latent-state models well-suited to modeling movement data. Here, we used HMMs to assess seasonal patterns of variation in the movement of pronghorn ( Antilocapra americana ), a species known for variable seasonal movements that challenge analytical approaches, while using a population of mule deer ( Odocoileus hemionus ), for whom seasonal movements are well-documented, as a comparison. We used population-level HMMs in a Bayesian framework to estimate a seasonal trend in the daily probability of transitioning between a short-distance local movement state and a long-distance movement state. The estimated seasonal patterns of movements in mule deer closely aligned with prior work based on indices of animal displacement: a short period of long-distance movements in the fall season and again in the spring, consistent with migrations to and from seasonal ranges. We found seasonal movement patterns for pronghorn were more variable, as a period of long-distance movements in the fall was followed by a winter period in which pronghorn were much more likely to further initiate and remain in a long-distance movement pattern compared with the movement patterns of mule deer. Overall, pronghorn were simply more likely to be in a long-distance movement pattern throughout the year. Hidden Markov movement models provide inference on seasonal movements similar to other methods, while providing a robust framework to understand movement patterns on shorter timescales and for more challenging movement patterns. Hidden Markov movement models can allow a rigorous assessment of the drivers of changes in movement patterns such as extreme weather events and land development, important for management and conservation.

Wyoming↗
USGS2017

Simultaneous estimation of diet composition and calibration coefficients with fatty acid signature data

Knowledge of animal diets provides essential insights into their life history and ecology, although diet estimation is challenging and remains an active area of research. Quantitative fatty acid signature analysis (QFASA) has become a popular method of estimating diet composition, especially for marine species. A primary assumption of QFASA is that constants called calibration coefficients, which account for the differential metabolism of individual fatty acids, are known. In practice, however, calibration coefficients are not known, but rather have been estimated in feeding trials with captive animals of a limited number of model species. The impossibility of verifying the accuracy of feeding trial derived calibration coefficients to estimate the diets of wild animals is a foundational problem with QFASA that has generated considerable criticism. We present a new model that allows simultaneous estimation of diet composition and calibration coefficients based only on fatty acid signature samples from wild predators and potential prey. Our model performed almost flawlessly in four tests with constructed examples, estimating both diet proportions and calibration coefficients with essentially no error. We also applied the model to data from Chukchi Sea polar bears, obtaining diet estimates that were more diverse than estimates conditioned on feeding trial calibration coefficients. Our model avoids bias in diet estimates caused by conditioning on inaccurate calibration coefficients, invalidates the primary criticism of QFASA, eliminates the need to conduct feeding trials solely for diet estimation, and consequently expands the utility of fatty acid data to investigate aspects of ecology linked to animal diets.

Ecology and Evolution↗