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USGS2005

Introduction [to Issue 3]

Artificial propagation of aquatic organisms is increasing globally and currently accounts for approximately 32% of total world fishery production (Vannuccini, 2004). Between 1970 and 2000, aquaculture production of salmonids has grown from less than 200,000 metric tons per year to over 1.5 million metric tons (Tacon, 2003). In 1995, the number of Atlantic salmon (Salmo salar) far exceeded the carrying capacity of salmon in the wild but over 94% of all adult Atlantic salmon were in aquaculture environments (Gross, 1998). Since the 1970’s, concerns have arisen about interactions of hatchery and wild produced salmonids in native habitats. In response, research has addressed concerns about domestication and genetic impacts (Reisenbichler and McIntyre, 1977; Hindar et al., 1991; Waples, 1991; Clifford et al., 1998a; Fleming et al., 2000, 2002; Hard et al., 2000), transfer of disease and parasites (Johnsen and Jensen, 1994; Bakke and Harris, 1998), behavior of spawning adults (Fleming and Gross, 1992; Fleming et al., 1994; Økland et al., 1995; Youngston et al., 1998), differences in fitness traits and life history (Jonsson et al., 1991; Thodesen et al., 1999; McGinnity et al., 2003), and behavioral interactions between hatchery and wild juvenile salmon (Swain and Riddell, 1990; Johnsson et al., 1996; Clifford et al., 1998b). Much of this research has been driven by concerns about the impacts of escaped farmed Atlantic salmon in the North Atlantic Ocean (Hansen et al., 1991). Studies of the interactions between hatchery and wild salmonids, with few exceptions (see Myers et al., 2000), have primarily focused on interactions in freshwater environments. Interactions between hatchery and wild fishes in estuarine and marine environments have not received the same attention, but may have signifi- cant impacts on wild populations. To address this issue, we organized a symposium held at the 2003 annual meeting of the Western Division of the American Fisheries Society in San Diego, California. The session was titled Interactions of Hatchery and Wild Fishes in Marine and Estuarine Environments and included nine presentations. All but one presentation focused on salmonids. This Special Issue of Reviews in Fish Biology and Fisheries includes five papers that were submitted to the symposium.

Reviews in Fish Biology and Fisheries↗
USGS2012

Introduction to the 8th International Workshop on Smoltification and a synthesis of major findings

The early life history of anadromous salmonid fishes, be they Atlantic ( Salmo salar ) or Pacific salmon ( Oncorhynchus spp.), trout of those genera, or charrs ( Salvelinus spp.), appears much more complex than previously thought. The seaward movement or migration is extremely polymorphic among and within species. To help provide understanding of the processes involved, and implications for conservation, management and husbandry, the 8th International Workshop on Smoltification was held on September 20–24, 2009, with participants from 9 different countries. Because the native distribution of these fishes is in northern latitudes, more or less circumglobally, similar workshops have been held roughly every four years in various countries, starting in LaJolla, California; and subsequently in Stirling, Scotland; Trondheim, Norway; St. Andrews, Canada; Muonio, Finland; Westport, Ireland; and Tono, Japan. Papers emanating from these previous workshops can be found in earlier Special Issues of Aquaculture while those from the 2009 workshop are presented here.

Aquaculture↗
USGS2006

Special issue: The changing shapes of active volcanoes: Recent results and advances in volcano geodesy

The 18 papers herein report on new geodetic data that offer valuable insights into eruptive activity and magma transport; they present new models and modeling strategies that have the potential to greatly increase understanding of magmatic, hydrothermal, and volcano-tectonic processes; and they describe innovative techniques for collecting geodetic measurements from remote, poorly accessible, or hazardous volcanoes. To provide a proper context for these studies, we offer a short review of the evolution of volcano geodesy, as well as a case study that highlights recent advances in the field by comparing the geodetic response to recent eruptive episodes at Mount St. Helens. Finally, we point out a few areas that continue to challenge the volcano geodesy community, some of which are addressed by the papers that follow and which undoubtedly will be the focus of future research for years to come.

Journal of Volcanology and Geothermal Research↗
USGS2002

Interspecific interactions, habitat use, and management of double-crested cormorants ( Phalacrocorax auritus ) in the Laurentian Great Lakes: An introduction

The collection of seven papers in this journal issue represents a subset of the presentations from a special session at the 44th Annual Conference of the International Association for Great Lakes Research. The session, 'Management of the Double-crested Cormorant in the Laurentian Great Lakes Region,' was held on 12 June 2001 and contained 18 presentations. Topics included cormorant-fish interactions, effects of cormorant nesting on colonies of other waterbirds, cormorant population dynamics, habitat use by foraging cormorants, evaluation of management techniques, and policy and conflict assessment on cormorant-related issues. The collection is organized into four basic topics: management of populations, effects of cormorants on other colonial waterbirds, foraging habitats of cormorants, and effects of cormorants on fisheries. A primary objective of this collection is to provide information and useful tools for managing cormorants in the Great Lakes.

Journal of Great Lakes Research↗
USGS1979

Arctic stream processes--an annotated bibliography

This bibliography selectively summarizes investigations to date (1978) dealing with the physical processes of streams in the Arctic. The specialized annotations include aspects of stream processes described in subordinate parts of general papers on the arctic environment and therefore not evident in author-abstract bibliographies. Foreign contributions--Canadian, Scandinavian, and Russian--are summarized, in the case of Russian literature primarily by means of papers in translation journals. Until 1970 the role of streams in development of the arctic landscape was commonly considered subordinate to that of glacial and frost-related processes. This conclusion changed, however, with the findings of the many new studies begun in response to oil and gas discoveries in the late 1960's. The conclusions of these studies, made to provide both the engineering data for resource development and the information to assess the impacts of that development, were in general agreement that stream processes throughout most of the Arctic were significantly more important than previously had been thought.

Water Supply Paper↗
USGS2013

Can law foster social-ecological resilience?

Law plays an essential role in shaping natural resource and environmental policy, but unfortunately, many environmental laws were developed around the prevailing scientific understanding that there was a “balance of nature” that could be managed and sustained. This view assumes that natural resource managers have the capacity to predict the behavior of ecological systems, know what its important functional components are, and successfully predict the outcome of management interventions. This paper takes on this problem by summarizing and synthesizing the contributions to this Special Feature (Law and Social-Ecological Resilience, Part I: Contributions from Resilience 2011), focusing on the interaction of law and social-ecological resilience, and then offering recommendations for the integration of law and social-ecological resilience.

Ecology and Society↗
USGS1997

Modeling fish dynamics and effects of stress in a hydrologically pulsed ecosystem

Many wetlands undergo seasonal cycles in precipitation and water depth.This environmental seasonality is echoed in patterns of production of fishbiomass, which, in turn, influence the phenology of other components of thefood web, including wading birds. Human activities, such as drainage orother alterations of the hydrology, can exacerbate these natural cycles andresult in detrimental stresses on fish production and the higher trophic levels dependent on this production. In this paper we model theseasonal pattern of fish production in a freshwater marsh, with specialreference to the Everglades/Big Cypress region of southern Florida.The model illustrates the temporal pattern of production through theyear, which can result in very high densities of fish at the end of ahydroperiod (period of flooding), aswell as the importance of ponds and other deep depressions, both as refugia and sinks during dry periods. The model predicts that: (1) there is an effective threshold in the length of the hydroperiod that must beexceeded for high fish-population densities to be produced, (2) large,piscivorous fishes do not appear tohave a major impact on smaller fishes in the marsh habitat, and (3) therecovery of small-fish populations in the marsh following a major droughtmay require up to a year. The last of these results is relevant toassessing anthropogenic impacts on marsh production, as these effectsmay increase the severity and frequency of droughts.

Journal of Aquatic Ecosystem Stress and Recovery↗
USGS1972

Geohydrologic summary of the Pearl River basin, Mississippi and Louisiana

Fresh water in abundance is contained in large artesian reservoirs in sand and gravel deposits of Tertiary and Quaternary ages in the Pearl River basin, a watershed of 8,760 square miles. Shallow, water-table reservoirs occur in Quarternary deposits (Pleistocene and Holocene) that blanket most of the uplands in .the southern half of the basin and that are present in smaller upland areas and along streams elsewhere. The shallow reservoirs contribute substantially to dry-weather flow of the Strong River and Bogue Chitto and of Holiday, Lower Little, Silver, and Whitesand Creeks, among others. About 3 billion acre-feet of ground water is in storage in the fresh-water section, which extends from the surface to depths ranging from about sea level in the extreme northern part of the basin to more than 3,000 feet below sea level in the southern part of the basin. Variations in low flow for different parts of the river basin are closely related to geologic terrane and occurrence of ground water. The upland terrace belt that crosses the south-central part of the basin is underlain by permeable sand and gravel deposits and yields more than 0.20 cubic feet per second per square mile of drainage area to streamflow, whereas the northern part of the basin, underlain by clay, marl, and fine to medium sand, yields less than 0.05 cubic feet per second per square mile of drainage area (based on 7-day Q2 minimum flow computed from records). Overall, the potential surface-water supplies are large. Because water is available at shallow depths, most of the deeper aquifers have not been developed anywhere in the basin. At many places in the south, seven or more aquifers could be developed either by tapping one sand in each well or by screening two or more sands in a single well. Well fields each capable, of producing several million gallons of water a day are feasible nearly anywhere in the Pearl River basin. Water in nearly all the aquifers is of good to excellent quality and requires little or no treatment for most uses. The water is a soft, sodium bicarbonate type and therefore has a low to moderate dissolved-solids content. Mineral content increases generally downdip in an aquifer. Excessive iron, common in shallow aquifers, is objectionable for some water uses. Water from the streams, except in salty tidal reaches, is less mineralized than ground water; in 10 sites the median dissolved-solids content in streamflow was 50 milligrams per liter or less. Moderately intensive ground-water development has been made in the Bogalusa area, Louisiana; at the Mississippi Test Facility, Hancock County, Miss. ; and in the Jackson area, Mississippi. Wells with pumping rates of 500 to 1,000 gallons per minute each are common throughout the Pearl River basin, and some deep wells flow more than 3,000 gallons per minute in the coastal lowland areas. Probably 20 million gallons per day of artesian water flows uncontrolled from wells in the southern part of the basin. Ground-water levels, except in the higher altitudes, are within 60 feet of the surface, and flowing wells are common in the valleys and in the coastal Pine Meadows. Decline of water level is a problem in only a few small areas. Saline water as a resource is available for development from aquifers and streams near the coast and from aquifers at considerable depth in most of the Pearl River basin. Pollution is a problem in oil fields and in reaches of some streams below sewage and other waste-disposal points. The basin estuary contains water of variable quality but has potential for certain water-use developments that will require special planning and management.

Water Supply Paper↗
USGS1992

Riparian vegetation recovery patterns following stream channelization: A geomorphic perspective

Hundreds of kilometres of West Tennessee streams have been channelized since the turn of the century. After a stream is straightened, dredged, or cleared, basinwide ecologic, hydrologic, and geomorphic processes bring about an integrated, characteristic recovery sequence. The rapid pace of channel responses to channelization provides an opportunity to document and interpret vegetation recovery patterns relative to otherwise long—term, concomitant evolution of river geomorphology. Nearly 150 sites along 15 streams were studied in the Obion, Forked Deer, Hatchie, and Wolf River basins. Channels of these streams, except that of the Hatchie River main stem, have undergone major modifications along all or parts of their courses. This paper presents the eco—geomorphic analyses and interpretation of a large multidisciplinary study, with special reference to their interrelated hydrogeomorphic aspects of channel recovery. Quantitative plant ecological analyses were conducted to infer relative bank stability, to identify indicator recovery species, and to determine patterns of vegetation development through the course of accelerated channel evolution. Binary—discriminant and ordination analyses show that distinctive riparian—species patterns reflect a six—stage model of channel evolution and can be used to infer channel stability and hydrogeomorphic conditions. Woody vegetation initially establishes on low— and mid—bank surfaces at the same location and time that bank accretion begins, and corresponds to the site of initial geomorphic restabilization. The linkage of channel bed aggradation, woody vegetation establishment, and bank accretion all lead to recovery of the channel. Pioneer species are hardy and fast growing, and can tolerate moderate amounts of slope instability and sediment deposition; these species include river birch (Betula nigra), black willow (Salix nigra), boxelder (Acer negundo), and silver maple (Acer saccharinum). High stem densities and root—mass development appear to enhance bank stability. Tree—ring analyses suggest that on average 65 yr may be required for recovery after channelization.

Ecology↗
USGS1975

Evaluation of stochastic models describing movement of sediment particles on riverbeds

Various stochastic models have been proposed to describe the movement of sediment particles on the riverbed. Here it is attempted to summarize in an integrated form and to generalize the most important theoretical results in this field. The approach adopted in this paper is based on the fact that most of the stochastic models are only special cases of a particular kind of random walk on the straight line.

Journal of Research of the U.S. Geological Survey↗
USGS2004

Computing and software

The reality is that the statistical methods used for analysis of data depend upon the availability of software. Analysis of marked animal data is no different than the rest of the statistical field. The methods used for analysis are those that are available in reliable software packages. Thus, the critical importance of having reliable, up–to–date software available to biologists is obvious. Statisticians have continued to develop more robust models, ever expanding the suite of potential analysis methods available. But without software to implement these newer methods, they will languish in the abstract, and not be applied to the problems deserving them. In the Computers and Software Session, two new software packages are described, a comparison of implementation of methods for the estimation of nest survival is provided, and a more speculative paper about how the next generation of software might be structured is presented. Rotella et al. (2004) compare nest survival estimation with different software packages: SAS logistic regression, SAS non–linear mixed models, and Program MARK. Nests are assumed to be visited at various, possibly infrequent, intervals. All of the approaches described compute nest survival with the same likelihood, and require that the age of the nest is known to account for nests that eventually hatch. However, each approach offers advantages and disadvantages, explored by Rotella et al. (2004). Efford et al. (2004) present a new software package called DENSITY. The package computes population abundance and density from trapping arrays and other detection methods with a new and unique approach. DENSITY represents the first major addition to the analysis of trapping arrays in 20 years. Barker & White (2004) discuss how existing software such as Program MARK require that each new model’s likelihood must be programmed specifically for that model. They wishfully think that future software might allow the user to combine pieces of likelihood functions together to generate estimates. The idea is interesting, and maybe some bright young statistician can work out the specifics to implement the procedure. Choquet et al. (2004) describe MSURGE, a software package that implements the multistate capture–recapture models. The unique feature of MSURGE is that the design matrix is constructed with an interpreted language called GEMACO. Because MSURGE is limited to just multistate models, the special requirements of these likelihoods can be provided. The software and methods presented in these papers gives biologists and wildlife managers an expanding range of possibilities for data analysis. Although ease–of–use is generally getting better, it does not replace the need for understanding of the requirements and structure of the models being computed. The internet provides access to many free software packages as well as user–discussion groups to share knowledge and ideas. (A starting point for wildlife–related applications is (http://www.phidot.org).

Animal Biodiversity and Conservation↗
USGS2004

Siberia snow depth climatology derived from SSM/I data using a combined dynamic and static algorithm

One of the major challenges in determining snow depth (SD) from passive microwave measurements is to take into account the spatiotemporal variations of the snow grain size. Static algorithms based on a constant snow grain size cannot provide accurate estimates of snow pack thickness, particularly over large regions where the snow pack is subjected to big spatial temperature variations. A recent dynamic algorithm that accounts for the dependence of the microwave scattering on the snow grain size has been developed to estimate snow depth from the Special Sensor Microwave/Imager (SSM/I) over the Northern Great Plains (NGP) in the US. In this paper, we develop a combined dynamic and static algorithm to estimate snow depth from 13 years of SSM/I observations over Central Siberia. This region is characterised by extremely cold surface air temperatures and by the presence of permafrost that significantly affects the ground temperature. The dynamic algorithm is implemented to take into account these effects and it yields accurate snow depths early in the winter, when thin snowpacks combine with cold air temperatures to generate rapid crystal growth. However, it is not applicable later in the winter when the grain size growth slows. Combining the dynamic algorithm to a static algorithm, with a temporally constant but spatially varying coefficient, we obtain reasonable snow depth estimates throughout the entire snow season. Validation is carried out by comparing the satellite snow depth monthly averages to monthly climatological data. We show that the location of the snow depth maxima and minima is improved when applying the combined algorithm, since its dynamic portion explicitly incorporate the thermal gradient through the snowpack. The results obtained are presented and evaluated for five different vegetation zones of Central Siberia. Comparison with in situ measurements is also shown and discussed. ?? 2004 Elsevier Inc. All rights reserved.

Remote Sensing of Environment↗
USGS2003

Climate variability and change in high elevation regions: Past, present & future

This special issue of Climatic Change contains a series of research and review articles, arising from papers that were presented and discussed at a workshop held in Davos, Switzerland on 25–28 June 2001. The workshop was titled ‘Climate Change at High Elevation Sites: Emerging Impacts’, and was convened to reprise an earlier conference on the same subject that was held in Wengen, Switzerland in 1995 (Diaz et al., 1997). The Davos meeting had as its main goals, a discussion of the following key issues: (1) reviewing recent climatic trends in high elevation regions of the world, (2) assessing the reliability of various biological indicators as indicators of climatic change, and (3) assessing whether physical impacts of climatic change in high elevation areas are becoming evident, and to discuss a range of monitoring strategies needed to observe and to understand the nature of any changes.

Climatic Change↗
USGS2013

The age of scarplike landforms from diffusion-equation analysis

The purpose of this paper is to review developments in the quantitative modeling of fault-scarp geomorphology, principally those since 1980. These developments utilize diffusionequation mathematics, in several different forms, as the basic model of fault-scarp evolution. Because solutions to the general diffusion equation evolve with time, as we expect faultscarp morphology to evolve with time, the model solutions carry information about the age of the structure and thus its time of formation; hence the inclusion of this paper in this volume. The evolution of fault-scarp morphology holds a small but special place in the much larger class of problems in landform evolution. In general, landform evolution means the evolution of topography as a function of both space and time. It is the outcome of the competition among those tectonic processes that make topography, erosive processes that destroy topography, and depositional processes that redistribute topography. Deposition and erosion can always be coupled through conservation-of-mass relations, but in general deposition occurs at great distance from the source region of detritus. Moreover, erosion is an inherently rough process whereas deposition is inherently smooth, as is evident from even casual inspection of shaded-relief, digital-elevation maps (e.g., Thelin and Pike, 1990; Simpson and Anders, 1992) and the current fascination with fractal representations oferoding terrains (e.g., Huang and Turcotte, 1989; Newman and Turcotte, 1990). Nevertheless, large-scale landform-evolution modeling, now a computationally intensive, advanced numerical exercise, is generating ever more realistic landforms (e.g., Willgoose and others, 1991a,b; Kooi and Beaumont, 1994; Tucker and Slingerland, 1994), although many of the rate coefficients remain poorly prescribed

Book chapter↗
USGS2014

Fluctuations in artesian pressure produced by passing railroad‐trains as shown in a well on Long Island, New York

Perhaps one of the chief interests of ground‐water hydrologists is the study of water‐level fluctuations. Since the beginning of the science of hydrology attempts have been made to interpret these phenomena and determine their significance. On the basis of actual observations and “with special reference to Long Island, New York,” Veatch [see 1 of “References” at end of paper] in 1906 considered in some detail several different causes of water‐level fluctuations. He placed the known causes under two general headings, natural and human. However, considering proximate rather than ultimate causes a further classification might be, and indeed often is, made with regard to the conditions under which the fluctuations are produced by a given agency, natural or human. Thus we speak of ”water‐table conditions“ and ”artesian conditions,“ realizing, however, that the distinction between the two is not always definite. The phenomena peculiar to artesian conditions are usually the result merely of the imperviousness of the confining beds relative to the particular aquifer under consideration. Indeed, it is recognized that perhaps even the most dense clay is not absolutely impervious to the flow of water, given a difference in head, sufficient to produce the flow, though it may be beyond the precision of the means now employed to detect the flow of water through such impervious strata.

New York↗