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Factors driving nutrient trends in streams of the Chesapeake Bay watershed
Despite decades of effort toward reducing nitrogen and phosphorus flux to Chesapeake Bay, water-quality and ecological responses in surface waters have been mixed. Recent research, however, provides useful insight into multiple factors complicating the understanding of nutrient trends in bay tributaries, which we review in this paper, as we approach a 2025 total maximum daily load (TMDL) management deadline. Improvements in water quality in many streams are attributable to management actions that reduced point sources and atmospheric nitrogen deposition and to changes in climate. Nutrient reductions expected from management actions, however, have not been fully realized in watershed streams. Nitrogen from urban nonpoint sources has declined, although water-quality responses to urbanization in individual streams vary depending on predevelopment land use. Evolving agriculture, the largest watershed source of nutrients, has likely contributed to local nutrient trends but has not affected substantial changes in flux to the bay. Changing average nitrogen yields from farmland underlain by carbonate rocks, however, may suggest future trends in other areas under similar management, climatic, or other influences, although drivers of these changes remain unclear. Regardless of upstream trends, phosphorus flux to the bay from its largest tributary has increased due to sediment infill in the Conowingo Reservoir. In general, recent research emphasizes the utility of input reductions over attempts to manage nutrient fate and transport at limiting nutrients in surface waters. Ongoing research opportunities include evaluating effects of climate change and conservation practices over time and space and developing tools to disentangle and evaluate multiple influences on regional water quality.
A guide to environmental DNA extractions for non-molecular trained biologists, ecologists, and conservation scientists
Ecologists, biologists, and conservation scientists are increasingly interested in the use of environmental DNA (eDNA) data for research and potentially decision-making. While commercial DNA extraction kits are typically user-friendly and accessible, they may fail to deliver the desired results with inherently complex eDNA samples, necessitating protocol optimization or educated selection of alternative approaches. To this end, knowledge of the basic steps and principles of DNA extractions is essential, but traditional education tracks in ecology, conservation, and environmental management typically do not include in-depth training in molecular methods. The primary objective of this paper is to enable scientists with an ecological background and limited molecular training to understand the four key steps of eDNA isolations, and to use this expertise to their advantage. We describe the purpose of commonly used reagents and chemicals, point out alternatives for each key step, explain the impact of certain choices regarding isolation approaches on DNA integrity and purity, and highlight the possibility of a tailor-made “mix and match” approach. We anticipate that this paper will enable field ecologists to develop a deeper understanding of the mechanisms and chemistry underlying eDNA extractions, thus allowing them to make informed decisions regarding the best eDNA extraction method for their research goals. Our intention is not to provide comprehensive, step-by-step protocols, but to offer guiding principles while highlighting alternative solutions. Finally, we hope that this paper will act as a useful resource to support knowledge transfer and teaching.
Are we working towards global research priorities for management and conservation of sea turtles?
In 2010, an international group of 35 sea turtle researchers refined an initial list of more than 200 research questions into 20 metaquestions that were considered key for management and conservation of sea turtles. These were classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies. To obtain a picture of how research is being focused towards these key questions, we undertook a systematic review of the peer-reviewed literature (2014 and 2015) attributing papers to the original 20 questions. In total, we reviewed 605 articles in full and from these 355 (59%) were judged to substantively address the 20 key questions, with others focusing on basic science and monitoring. Progress to answering the 20 questions was not uniform, and there were biases regarding focal turtle species, geographic scope and publication outlet. Whilst it offers some meaningful indications as to effort, quantifying peer-reviewed literature output is obviously not the only, and possibly not the best, metric for understanding progress towards informing key conservation and management goals. Along with the literature review, an international group based on the original project consortium was assigned to critically summarise recent progress towards answering each of the 20 questions. We found that significant research is being expended towards global priorities for management and conservation of sea turtles. Although highly variable, there has been significant progress in all the key questions identified in 2010. Undertaking this critical review has highlighted that it may be timely to undertake one or more new prioritizing exercises. For this to have maximal benefit we make a range of recommendations for its execution. These include a far greater engagement with social sciences, widening the pool of contributors and focussing the questions, perhaps disaggregating ecology and conservation.
An overview of estrogen-associated endocrine disruption in fishes: Evidence of effects on reproductive and immune physiology
Simply and perhaps intuitively defined, endocrine disruption is the abnormal modulation of normal hormonal physiology by exogenous chemicals. In fish, endocrine disruption of the reproductive system has been observed worldwide in numerous species and is known to affect both males and females. Observations of biologically relevant endocrine disruption most commonly occurs near waste water treatment plant outfalls, pulp and paper mills, and areas of high organic loading sometimes associated with agricultural practices. Estrogenic endocrine disrupting chemicals (EEDCs) have received an overwhelmingly disproportionate amount of scientific attention compared to other EDCs in recent years. In male fishes, exposure to EEDCs can lead to the induction of testicular oocytes (intersex), measurable plasma vitellogenin protein, altered sex steroid profiles, abnormal spawning behavior, skewed population sex ratios, and lessened reproductive success. Interestingly, contemporary research purports that EDCs modulate aspects of non-reproductive physiology including immune function. Here we present an overview of endocrine disruption in fishes associated with estrogenic compounds, implications of this phenomenon, and examples of EDC related research findings by our group in the Potomac River Watershed, USA.
Changing anthropogenic influence on the Santa Monica Bay watershed
Santa Monica Bay is an open coastal embayment located directly seaward of Los Angeles, California. The Bay provides vital economic value through its water-dependent activities, such as swimming, diving, boating, and fishing. An increase from 100,000 residents in 1900 to 10 million in 2000 has imposed numerous environmental stressors on the Bay, including urbanization of the watershed. Pollutant discharges into the Bay increased throughout the early part of the century, but declined following passage of the Clean Water Act in 1972. Since that time, the predominant source of pollutant inputs has changed from point sources to non-point urban runoff. To assess how present-day and historical pollution interact to affect the environmental quality of Santa Monica Bay, three organizations collaborated on a multi-disciplinary study in 1997, towards which this volume is focused. This paper details the temporal patterns of anthropogenic influence on Santa Monica Bay to provide context for the papers that follow.
The development of an EDSS: Lessons learned and implications for DSS research
The Solar and Wind Energy Resource Assessment (SWERA) project is focused on providing renewable energy (RE) planning resources to the public. Examples include wind, solar, and hydro assessments. SWERA DSS consists of three major components. First, SWERA 'Product Archive' provides for a discovery DSS upon which users can find and access renewable energy data and supporting models. Second, the 'Renewable Resource EXplorer' (RREX) component serves as a web-based, GIS analysis tool for viewing RE resource data available through the SWERA Product Archive. Third, the SWERA web service provides computational access to the data available in the SWERA spatial database through a location based query, and is also utilized in the RREX component. We provide a discussion of various design decisions used in the construction of this EDSS, followed by project experiences and implications for EDSS and broader DSS research.
Supplemental materials for the ICDP-USGS Eyreville A, B, and C core holes, Chesapeake Bay impact structure: Core-box photographs, coring-run tables, and depth-conversion files
During 2005-2006, the International Continental Scientific Drilling Program and the U.S. Geological Survey drilled three continuous core holes into the Chesapeake Bay impact structure to a total depth of 1766.3 m. A collection of supplemental materials that presents a record of the core recovery and measurement data for the Eyreville cores is available on CD-ROM at the end of this volume and in the GSA Data Repository. The supplemental materials on the CD-ROM include digital photographs of each core box from the three core holes, tables of the three coring-run logs, as recorded on site, and a set of depth-conversion programs. In this chapter, the contents, purposes, and basic applications of the supplemental materials are briefly described. With this information, users can quickly decide if the materials will apply to their specific research needs.
Boreal partners in flight: Working together to build a regional research and monitoring program
Boreal regions of western North America regularly support breeding populations of 130 species of landbirds, including 68 Nearctic-Neotropical migrants. Primary conservation concerns within the region include increased timber harvesting, insect outbreaks, fire suppression, mining, impacts of military training activities, urbanization, and recreational activities. Under auspices of Partners in Flight, biologists, land and resource managers, and conservationists from Alaska and western Canada have combined efforts to develop a regional research and monitoring program for landbirds. An experimental monitoring program has been under way during the past four years to test the relative statistical power and cost-effectiveness of various monitoring methods in Alaska. Joint efforts currently include the Alaska Checklist Project on National Wildlife Refuges, 75 Breeding Bird Surveys along the road system, 122 Off-road Point Count routes, 27 Monitoring Avian Productivity and Survivorship banding sites, and 8 migration banding stations. The ultimate goal is to design a comprehensive monitoring program that is sensitive to changes in population size, survival rates, and productivity, but robust enough to accommodate logistical constraints that arise when working in vast, roadless areas with limited funds and staff. Primary challenges that must be faced to assure the long-term future of such a program are obtaining long-term commitment from resource agencies in the region, integrating this program with other national and regional programs that address those species and habitats that are inadequately monitored by established techniques, and developing cooperative research, monitoring, and management programs at the landscape level.
Real-time seismic monitoring of the integrated cape girardeau bridge array and recorded earthquake response
This paper introduces the state of the art, real-time and broad-band seismic monitoring network implemented for the 1206 m [3956 ft] long, cable-stayed Bill Emerson Memorial Bridge in Cape Girardeau (MO), a new Mississippi River crossing, approximately 80 km from the epicentral region of the 1811-1812 New Madrid earthquakes. The bridge was designed for a strong earthquake (magnitude 7.5 or greater) during the design life of the bridge. The monitoring network comprises a total of 84 channels of accelerometers deployed on the superstructure, pier foundations and at surface and downhole free-field arrays of the bridge. The paper also presents the high quality response data obtained from the network. Such data is aimed to be used by the owner, researchers and engineers to assess the performance of the bridge, to check design parameters, including the comparison of dynamic characteristics with actual response, and to better design future similar bridges. Preliminary analyses of ambient and low amplitude small earthquake data reveal specific response characteristics of the bridge and the free-field. There is evidence of coherent tower, cable, deck interaction that sometimes results in amplified ambient motions. Motions at the lowest tri-axial downhole accelerometers on both MO and IL sides are practically free from any feedback from the bridge. Motions at the mid-level and surface downhole accelerometers are influenced significantly by feedback due to amplified ambient motions of the bridge. Copyright ASCE 2006.
Cooperative science to inform Lake Ontario management: Research from the 2013 Lake Ontario CSMI program
Since the mid-1970s, successful Lake Ontario management actions including nutrient load and pollution reductions, habitat restoration, and fish stocking have improved Lake Ontario. However, several new obstacles to maintenance and restoration have emerged. This special issue presents management-relevant research from multiple agency surveys in 2011 and 2012 and the 2013 Cooperative Science and Monitoring Initiative (CSMI), that span diverse lake habitats, species, and trophic levels. This research focused on themes of nutrient loading and fate; vertical dynamics of primary and secondary production; fish abundance and behavior; and food web structure. Together these papers identify the status of many of the key drivers of the Lake Ontario ecosystem and contribute to addressing lake-scale questions and management information needs in Lake Ontario and the other Great Lakes and connecting water bodies.
Fractals in petroleum geology and earth processes
In this unique volume, renowned experts discuss the applications of fractals in petroleum research-offering an excellent introduction to the subject. Contributions cover a broad spectrum of applications from petroleum exploration to production. Papers also illustrate how fractal geometry can quantify the spatial heterogeneity of different aspects of geology and how this information can be used to improve exploration and production results.
GSTARS computer models and their applications, part I: theoretical development
GSTARS is a series of computer models developed by the U.S. Bureau of Reclamation for alluvial river and reservoir sedimentation studies while the authors were employed by that agency. The first version of GSTARS was released in 1986 using Fortran IV for mainframe computers. GSTARS 2.0 was released in 1998 for personal computer application with most of the code in the original GSTARS revised, improved, and expanded using Fortran IV/77. GSTARS 2.1 is an improved and revised GSTARS 2.0 with graphical user interface. The unique features of all GSTARS models are the conjunctive use of the stream tube concept and of the minimum stream power theory. The application of minimum stream power theory allows the determination of optimum channel geometry with variable channel width and cross-sectional shape. The use of the stream tube concept enables the simulation of river hydraulics using one-dimensional numerical solutions to obtain a semi-two- dimensional presentation of the hydraulic conditions along and across an alluvial channel. According to the stream tube concept, no water or sediment particles can cross the walls of stream tubes, which is valid for many natural rivers. At and near sharp bends, however, sediment particles may cross the boundaries of stream tubes. GSTARS3, based on FORTRAN 90/95, addresses this phenomenon and further expands the capabilities of GSTARS 2.1 for cohesive and non-cohesive sediment transport in rivers and reservoirs. This paper presents the concepts, methods, and techniques used to develop the GSTARS series of computer models, especially GSTARS3. ?? 2008 International Research and Training Centre on Erosion and Sedimentation and the World Association for Sedimentation and Erosion Research.
Classifying physiographic regimes on terrain and hydrologic factors for adaptive generalization of stream networks
Automated generalization software must accommodate multi-scale representations of hydrographic networks across a variety of geographic landscapes, because scale-related hydrography differences are known to vary in different physical conditions. While generalization algorithms have been tailored to specific regions and landscape conditions by several researchers in recent years, the selection and characterization of regional conditions have not been formally defined nor statistically validated. This paper undertakes a systematic classification of landscape types in the conterminous United States to spatially subset the country into workable units, in preparation for systematic tailoring of generalization workflows that preserve hydrographic characteristics. The classification is based upon elevation, standard deviation of elevation, slope, runoff, drainage and bedrock density, soil and bedrock permeability, area of inland surface water, infiltration-excess of overland flow, and a base flow index. A seven class solution shows low misclassification rates except in areas of high landscape diversity such as the Appalachians, Rocky Mountains, and Western coastal regions.
Explorers from space
The statement that a new era in exploration is opening will almost surely bring to mind the venturing of man into space and the ever more imminent exploration of the moon. The reference here, however, is to exploration of earth itself and to the unique capabilities for study of the earth that space technology will provide. Demands for water, minerals, energy, food, and for working, living and recreational space are outrunning our ability to meet them by traditional methods. In order to satisfy these demands, it is necessary now, just as it has been in the past, to look to the activities, the instruments, and the technologies that in part create the pressures for aid in meeting them. Studies being made at the U.S. Geological Survey and elsewhere of the potential applications of remote sensors in space to earth resources research indicate that now, at last, it will be possible to approach solutions on a regional or global basis. This paper discusses the plans for an Earth Resources Observational Satellites Program which will be designed for that purpose.
Attribution of monotonic trends and change points in peak streamflow across the conterminous United States using a multiple working hypotheses framework, 1941–2015 and 1966–2015
The U.S. Geological Survey has a long history of leading flood-frequency analysis studies. These studies play a critical role in the assessment of risk, protection of lives, and planning and design of flood protection infrastructure. Standard flood-frequency analysis is based on the assumption of stationarity—that is, that the distribution of floods at a given site varies around a particular mean within a particular envelope of variance (and skew) and that these parameters of the underlying statistical distribution representative of the floods do not vary over time. Gradual or abrupt changes in one or more of the distributional parameters are called nonstationarities and violate the underlying assumptions of current U.S. Federal Government guidelines for flood-frequency analysis. Uncertainty exists as to what degree of violations calls for the use of a modified method for flood-frequency analysis and what the modified method(s) should be. When deciding whether to perform nonstationary flood-frequency analysis and choosing a method for such analysis, it is important to understand the causes of the nonstationarity. Gradual or abrupt changes in distributional properties of floods may be the result of numerous factors, such as regulation, diversion, land-use change, or climate change. In the interest of developing a cohesive national approach for better understanding the causes of nonstationarities and incorporating potential or observed changes into flood-frequency estimates, subject-matter experts from the U.S. Geological Survey and cooperators worked together to develop a multiple working hypotheses framework for making attributions and a common vocabulary for making provisions of confidence. Seven regional teams of these experts used ancillary datasets and institutional knowledge to evaluate plausible causes for monotonic trends and change points in annual peak-streamflow data for the conterminous United States that had been identified in an earlier phase of the project. The first chapter of this professional paper describes the development of a list of the potential attributions, presents a literature review of the potential attributions, describes the regional approach, summarizes insights obtained from the attribution process, and suggests future research. The other chapters provide the methods used for attribution in the seven regions—Pacific Northwest, Upper Plains, Midwest, Northeast, Southwest, South-Central, and Southeast—and summarize the regional patterns of nonstationarities.
Impacts of petroleum production on ground and surface waters: Results from the Osage-Skiatook Petroleum Environmental Research A site, Osage County Oklahoma
Kharaka has been a research hydrogeochemist with the U.S. Geological Survey since1975. His current research covers the fields of water-rock-gas interactions, CO 2 sequestration, contamination from agricultural drainage and petroleum produced water, and fluid-fault interactions. Kharaka has authored more than 100 scientific papers and book chapters and has delivered about 200 presentations. He received his Ph.D. from the University of California, Berkeley, in 1971. Thordsen is a geologist, employed with the U.S. Geological Survey since 1981 and presently working in the project team Hydrogeochemistry of Fine Grained Sediments, in the Water Resources Division, National Research Program. His recent research covers water-rock interactions and geochemical modeling in geothermal systems, fault-fluid systems, and petroleum produced water brine impacts. He received his M.S. in geology from the Ohio State University in 1988. Kakouros has been a hydrogeologist in the U.S. Geological Survey Water Resources Division in Menlo Park, California, since 1999. His current research covers the fields of Se contamination from agricultural drainage, CO 2 sequestration, and contamination from petroleum and petroleum-produced water. Kakouros received his M.Sc. from the San Jose State University in 2001. Herkelrath is a physicist in the U.S. Geological Survey's Water Resources Division National Research Program in Menlo Park, California. Herkelrath received his Ph.D. in physics from the University of Wisconsin at Madison. His recent research interests include multiphase flow and solute transport modeling in shallow ground-water systems where oil or brine is present.
Building a multi-scaled geospatial temporal ecology database from disparate data sources: Fostering open science through data reuse
Although there are considerable site-based data for individual or groups of ecosystems, these datasets are widely scattered, have different data formats and conventions, and often have limited accessibility. At the broader scale, national datasets exist for a large number of geospatial features of land, water, and air that are needed to fully understand variation among these ecosystems. However, such datasets originate from different sources and have different spatial and temporal resolutions. By taking an open-science perspective and by combining site-based ecosystem datasets and national geospatial datasets, science gains the ability to ask important research questions related to grand environmental challenges that operate at broad scales. Documentation of such complicated database integration efforts, through peer-reviewed papers, is recommended to foster reproducibility and future use of the integrated database. Here, we describe the major steps, challenges, and considerations in building an integrated database of lake ecosystems, called LAGOS (LAke multi-scaled GeOSpatial and temporal database), that was developed at the sub-continental study extent of 17 US states (1,800,000 km 2 ). LAGOS includes two modules: LAGOS GEO , with geospatial data on every lake with surface area larger than 4 ha in the study extent (~50,000 lakes), including climate, atmospheric deposition, land use/cover, hydrology, geology, and topography measured across a range of spatial and temporal extents; and LAGOS LIMNO , with lake water quality data compiled from ~100 individual datasets for a subset of lakes in the study extent (~10,000 lakes). Procedures for the integration of datasets included: creating a flexible database design; authoring and integrating metadata; documenting data provenance; quantifying spatial measures of geographic data; quality-controlling integrated and derived data; and extensively documenting the database. Our procedures make a large, complex, and integrated database reproducible and extensible, allowing users to ask new research questions with the existing database or through the addition of new data. The largest challenge of this task was the heterogeneity of the data, formats, and metadata. Many steps of data integration need manual input from experts in diverse fields, requiring close collaboration.