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Climate impacts to inland fishes: Shifting research topics over time

Climate change remains a primary threat to inland fishes and fisheries. Using topic modeling to examine trends and relationships across 36 years of scientific literature on documented and projected climate impacts to inland fish, we identify ten representative topics within this body of literature: assemblages, climate scenarios, distribution, climate drivers, population growth, invasive species, populations, phenology, physiology, and reproduction. These topics are largely similar to the output from artificial intelligence application (i.e., ChatGPT) search prompts, but with some key differences. The field of climate impacts on fish has seen dramatic growth since the mid-2000s with increasing popularity of topics related to drivers, assemblages, and phenology. The topics were generally well-dispersed with little overlap of common words, apart from phenology and reproduction which were closely clustered. Pairwise comparisons between topics revealed potential gaps in the literature including between reproduction and distribution and between physiology and phenology. A better understanding of these relationships can help capitalize on existing literature to inform conservation and sustainable management of inland fishes with a changing climate.

PLOS Climate↗

Field manual for the investigation of fish kills

Preface Fish kills are graphic evidence of serious problems in a lake or stream. If the kill is related to the presence of toxic chemicals, there may be human health concerns, in addition to the obvious damage to the ecosystem and the fisheries resources. Depending on the cause of a fish kill, legal and economic ramifications may be involved. If the kill is cause by human or corporate actions, litigation is likely to follow, with possible court-awarded damages and assessed costs for cleanup and restoration. Federal and State agencies have expressed the need for a compendium of known and accepted methods and techniques that should be followed by anyone investigation a fish kill. This manual is an attempt to fill that need. It addresses the many facets involved in a fish kill investigation and provides instruction, guidance, examples, and sample forms that can be used. The U.S. Fish and Wildlife Service is pleased to provide this manual to help fisheries biologists and others prepare for a fish kill investigation. Research and Development (Region 8) has cooperated with the Division of Environmental Contaminants in Fish and Wildlife Enhancement to provide expertise and funds. We hope that the manual proves to be useful for interpreting evidence at the site of a fish kill, and corrective actions, and preparing for appearance as a court witness.

Resource Publication↗

Tracking sea turtles in the Everglades

The U.S. Geological Survey (USGS) has a long history of conducting research on threatened, endangered, and at-risk species inhabiting both terrestrial and marine environments, particularly those found within national parks and protected areas. In the coastal Gulf of Mexico region, for example, USGS scientist Donna Shaver at Padre Island National Seashore in Texas has focused on “headstarting” hatchlings of the rare Kemp’s ridley sea turtle (Lepidochelys kempii). She is also analyzing trends in sea turtle strandings onshore and interactions with Gulf shrimp fisheries. Along south Florida’s Gulf coast, the USGS has focused on research and monitoring for managing the greater Everglades ecosystem. One novel project involves the endangered green sea turtle (Chelonia mydas). The ecology and movements of adult green turtles are reasonably well understood, largely due to decades of nesting beach monitoring by a network of researchers and volunteers. In contrast, relatively little is known about the habitat requirements and movements of juvenile and subadult sea turtles of any species in their aquatic environment.

Florida↗

Nearshore distribution and abundance of Dungeness crabs in Glacier Bay National Park, Alaska

As part of an ongoing, multi-agency study to determine the effects of closure of the commercial fishery for Dungeness crabs, Cancer magister , on crab population structure we examined patterns of distribution and abundance of crabs in nearshore habitats at five locations in and near Glacier Bay National Park. Sampling was conducted in April and September 1992 and April 1993 prior to the anticipated closure of the fishery in the park. Divers censused crabs by sex and reproductive state (ovigerous/nonovigerous females) along belt transects (2m x 100m) laid perpendicular to shore in the depth range 0 m (mean lower low water) to 18 m. Preliminary results from the first three sampling periods revealed that the average densities of Dungeness crabs at the five locations ranged from 78 to 2012 crabs/ha. Crab densities differed between populations depending on sex, reproductive state of females and sampling period. Male crabs showed reduced densities at Gustavus Flats in April 1992 (P<0.01) and 1993 (P<0.001). Ovigerous females had greater density at Bartlett Cove in April 1993 (P<0.001). Sex ratios were frequently skewed toward females. At Bartlett Cove and Gustavus Flats females outnumbered males in April 1992 and 1993 (P<0.001). Most of the females at Bartlett Cove and Gustavus Flats in April 1992 and 1993 were ovigerous (P-0.001). Males tended to occupy greater depths than females in April 1992 (P<0.05) but not April 1993 (P-005). The mean depth of males shifted from deeper to shallower water between April and September 1992 (P<0.001). The depth distribution of ovigerous crabs did not differ from that of nonovigerous female crabs. Future research prior to the anticipated closure of the commercial Dungeness crab fishery in Glacier Bay will include a tagging study to determine the extent of crab movement and further study of the temporal as well as the spatial variability observed in the structure of these populations.

Alaska↗

Stomach emptiness in fishes: Sources of variation and study design implications

This study summarizes fish stomach content data from 369,000 fish from 402 species in 1,096 collections and reports on the percentage of individuals with empty stomachs. The mean percentage of individuals with empty stomachs among all species, locations, habitats, seasons, regions, and collection methods was 26.4%. Mean percentage of individuals with empty stomachs varied significantly among fish collection gear types, taxonomic orders, trophic groups, feeding behaviors, and habitats, and with species length at maturity. Most of the variation in percentage of individuals with empty stomachs was explained by species length at maturity, fish collection gear type, and two autecological factors: trophic group (piscivore percentage of individuals with empty stomachs > non-piscivore percentage of individuals with empty stomachs) and feeding habitat (water column feeder percentage of individuals with empty stomachs > benthic feeder percentage of individuals with empty stomachs). After accounting for variation with fish length, the percentage of individuals with empty stomachs did not vary with the stomach removal collection method (dissection vs. gastric lavage), feeding time (diurnal or nocturnal), or time of collection (day or night). The percentage of individuals with empty stomachs was similar between fresh and saltwater fish, but differed within finer habitat classifications and appeared to follow a general prey availability or productivity gradient: percentage of individuals with empty stomachs of open ocean collections > estuary collections, lentic > lotic, and pelagic > littoral. Gear type (active or passive) was the most influential factor affecting the occurrence of empty stomachs that can be readily controlled by researchers.

Reviews in Fisheries Science↗

Mortality of seabirds in the Japanese land-based gillnet fishery for salmon

Mortality rates of seabirds in the Japanese land-based drift gillnet fishery for salmon were assessed from 413 gillnet sets made by Japanese research vessels in offshore areas used by the commercial fleet. Sixteen species of seabirds were recorded in nets. Shearwaters, primarily Short-tailed Shearwaters ( Puffinus tenuirostris ), and to a lesser extent Sooty Shearwaters ( P. griseus ), predominated in the catches, followed by lesser numbers of Tufted Puffins ( Fratercula cirrhata ) and Thick-billed Murres ( Uria lomvia ). Catch-rates of seabirds varied by oceanographic zone, with most being caught in oceanic waters north of the Subarctic Front. Approximately 151,000 seabirds were killed in the offshore component of the land-based fishery in 1977. Mortality was reduced to about 57,000 seabirds in 1987 because of a reduction in fishing effort. No estimates are available of seabird mortality in the nearshore component of the fishery. Mortality of seabirds in the land-based fishery is discussed with respect to other major drift gillnet fisheries in the North Pacific.

The Condor↗

Strontium isotopes delineate fine-scale natal origins and migration histories of Pacific salmon

Highly migratory organisms present major challenges to conservation efforts. This is especially true for exploited anadromous fish species, which exhibit long-range dispersals from natal sites, complex population structures, and extensive mixing of distinct populations during exploitation. By tracing the migratory histories of individual Chinook salmon caught in fisheries using strontium isotopes, we determined the relative production of natal habitats at fine spatial scales and different life histories. Although strontium isotopes have been widely used in provenance research, we present a new robust framework to simultaneously assess natal sources and migrations of individuals within fishery harvests through time. Our results pave the way for investigating how fine-scale habitat production and life histories of salmon respond to perturbations&mdash;providing crucial insights for conservation.

Alaska↗

Florida Integrated Science Center (FISC) Coral Reef Research

Coral reefs provide important ecosystem services such as shoreline protection and the support of lucrative industries including fisheries and tourism. Such ecosystem services are being compromised as reefs decline due to coral disease, climate change, overfishing, and pollution. There is a need for focused, integrated science to understand the complex ecological interactions and effects of these many stressors and to provide information that will effectively guide policies and best management practices to preserve and restore these important resources. The U.S. Geological Survey Florida Integrated Science Center (USGS-FISC) is conducting a coordinated Coral Reef Research Project beginning in 2009. Specific research topics are aimed at addressing priorities identified in the 'Strategic Science for Coral Ecosystems 2007-2011' document (U.S. Geological Survey, 2007). Planned research will include a blend of historical, monitoring, and process studies aimed at improving our understanding of the development, current status and function, and likely future changes in coral ecosystems. Topics such as habitat characterization and distribution, coral disease, and trends in biogenic calcification are major themes of understanding reef structure, ecological integrity, and responses to global change.

Fact Sheet↗

Diet and trophic ecology of invasive Blue Catfish Ictalurus furcatus in an eastern shore tributary of the Chesapeake Bay

Blue Catfish Ictalurus furcatus were first introduced to Virginia tributaries of the Chesapeake Bay in the 1970s and have greatly expanded in population size and distribution, prompting ecological and economic concerns. This study investigates the diet and trophic ecology of invasive Blue Catfish in tidal, low-salinity reaches of the Nanticoke River and Marshyhope Creek, on the Chesapeake Bay’s Eastern Shore (Maryland, USA), using complementary stomach content (SCA) and stable isotope (SIA) analyses. Stomach contents from Blue Catfish ( n = 363 non-empty stomachs) were collected opportunistically from October 2021 through November 2022. For SIA, 136 individuals across 21 fish species, blue crab Callinectes sapidus , and arrow arum Peltandra virginica were sampled between October 2021 and October 2023. SCA revealed considerable seasonal and size-based diet variability, suggesting a shift from omnivory to piscivory at 563 mm total length. Primary prey included fish, arrow arum seeds, Asian clams Corbicula fluminea , and amphipods, along with seasonally available species of economic and ecological importance (river herring Alosa spp., blue crab, White Perch Morone americana , and Atlantic Menhaden Brevoortia tyrannus ). Minimal isotopic niche overlap between large and small Blue Catfish size classes, alongside ontogenetic trends in δ 13 C and δ 15 N, substantiated SCA-detected diet shifts. Trophic level estimates derived from Blue Catfish δ 15 N ( n = 54 individuals) were higher than those from SCA, particularly for individuals <563 mm. Blue Catfish occupied a relatively high trophic level, and carbon and sulfur SIA indicated marine resource utilization, substantiating SCA results. This research describes localized trophic interactions of invasive Blue Catfish to inform fishery management planning regarding Blue Catfish’s potential influence on other species of management interest.

Delaware, Maryland↗

Smartphones reveal angler behavior: A case study of a popular mobile fishing application in Alberta, Canada

Successfully managing fisheries and controlling the spread of invasive species depends on the ability to describe and predict angler behavior. However, finite resources restrict conventional survey approaches and tend to produce retrospective data that are limited in time or space and rely on intentions or attitudes rather than actual behavior. In this study, we used three years of angler data from a popular mobile fishing application in Alberta, Canada, to determine province-wide, seasonal patterns of (1) lake popularity that were consistent with conventional data and (2) anthropogenic lake connectivity that has not been widely described in North America. Our proof-of-concept analyses showed that mobile apps can be an inexpensive source of high-resolution, real-time data for managing fisheries and invasive species. We also identified key challenges that underscore the need for further research and development in this new frontier that combines big data with increased stakeholder interaction and cooperation.

Fisheries↗

Deep-sea coral research and technology program: Alaska deep-sea coral and sponge initiative final report

Deep-sea coral and sponge ecosystems are widespread throughout most of Alaska’s marine waters. In some places, such as the central and western Aleutian Islands, deep-sea coral and sponge resources can be extremely diverse and may rank among the most abundant deep-sea coral and sponge communities in the world. Many different species of fishes and invertebrates are associated with deep-sea coral and sponge communities in Alaska. Because of their biology, these benthic invertebrates are potentially impacted by climate change and ocean acidification. Deepsea coral and sponge ecosystems are also vulnerable to the effects of commercial fishing activities. Because of the size and scope of Alaska’s continental shelf and slope, the vast majority of the area has not been visually surveyed for deep-sea corals and sponges. NOAA’s Deep Sea Coral Research and Technology Program (DSCRTP) sponsored a field research program in the Alaska region between 2012–2015, referred to hereafter as the Alaska Initiative. The priorities for Alaska were derived from ongoing data needs and objectives identified by the DSCRTP, the North Pacific Fishery Management Council (NPFMC), and Essential Fish Habitat-Environmental Impact Statement (EFH-EIS) process. This report presents the results of 15 projects conducted using DSCRTP funds from 2012-2015. Three of the projects conducted as part of the Alaska deep-sea coral and sponge initiative included dedicated at-sea cruises and fieldwork spread across multiple years. These projects were the eastern Gulf of Alaska Primnoa pacifica study, the Aleutian Islands mapping study, and the Gulf of Alaska fish productivity study. In all, there were nine separate research cruises carried out with a total of 109 at-sea days conducting research. The remaining projects either used data and samples collected by the three major fieldwork projects or were piggy-backed onto existing research programs at the Alaska Fisheries Science Center (AFSC).

NOAA Technical Memorandum↗

Communication approaches and specialists that can improve fisheries management

This paper aims to expand fisheries managers' understanding of how the science of communication can facilitate effective fisheries management. We offer context-specific definitions of four communication approaches that are commonly performed by fisheries managers but poorly defined and can easily be confused or conflated. These are as follows: Outreach, Education, Social Marketing, and Engagement. Further, we explain key evidence-based principles that support each communication approach and offer practical examples of their application. Finally, we highlight different communication research fields that produce social science for communication practitioners to use in the context of fisheries management. These explanations support our claim that effective communication is required to meet the professional needs of fisheries managers and encompasses meeting the needs of their audiences.

Fisheries Magazine↗

A characterization of the deep-sea coral and sponge community along the Oregon Coast using a remotely operated vehicle on the EXPRESS 2022 expedition

Deep-sea coral and sponge (DSCS) communities serve as essential fish habitat (EFH) by providing shelter and nursery habitat, increasing diversity, and increasing prey availability (Freese and Wing, 2003; Bright, 2007; Baillon et al., 2012; Henderson et al., 2020). Off the U.S. West Coast, threats to these long-lived, fragile organisms from bottom contact fishing gear, potential offshore renewable energy development, and ocean warming and acidification have been the subject of recent research (Gomez et al., 2018; Salgado et al., 2018; Yoklavich, et al., 2018; Gugliotti et al., 2019). Other DSCS studies have reported new species (Yoklavich and Love, 2005), analyzed species distribution and abundance (Tissot et al., 2006, Watters et al., 2022), developed predictive distribution models (Huff et al., 2013; Rooper et al., 2017; Kreidler, 2020), and discovered medicinal uses for corals and sponges (Essack et al., 2011; Shrestha et al., 2018). Due to the vast area of unexplored seafloor within the territorial waters and the U.S. exclusive economic zone (EEZ; 12-200 nautical miles off the coast) and the technological requirements and expense of deep-sea research, there is still much to learn about the distributions and biology of DSCS. This information is critical to resource managers for effective conservation and management of DSCS habitats. In order to minimize the adverse impacts of fishing on EFH, the Pacific Fishery Management Council (PFMC) and National Marine Fisheries Service (NMFS) designated several seafloor habitat areas as EFH conservation areas (EFHCA), first in 2006 (as part of Amendment 19 to the Pacific coast groundfish fishery management plan) and then again in 2020 (as part of Amendment 28). These areas are closed to bottom trawl fishing at a minimum, and in some cases to all bottom contact fishing gears. In addition to protections afforded by EFH-related regulations, the National Marine Sanctuary Program prohibits certain non-fishing activities within areas designated as national marine sanctuaries, such as oil and gas exploration or extraction, cable laying, and other forms of seabed alteration or construction that disturb benthic communities. NOAA’s Deep-Sea Coral and Research Technology Program (DSCRTP) began a 4-yr funding initiative for the U.S. West Coast in 2017. The goals of the West Coast Deep-Sea Coral Initiative (WCDSCI) were to: 1) gather baseline information on areas subject to fishing regulation changes prior to the implementation of Amendment 28; 2) improve our understanding of known DSCS bycatch “hot spots”; and 3) explore and assess DSCS resources within NOAA National Marine Sanctuaries with emphasis on areas of sanctuary resource protection and management concerns. As part of the WCDSCU, an 11-day expedition (3 Sep – 13 Sep 2022) was launched from the NOAA Ship Bell M. Shimada, beginning and ending in Newport, OR. The science team assembled for this cruise were members of the EXpanding Pacific Research and Exploration of Submerged Systems (EXPRESS) campaign, which brings together researchers from federal and nonfederal institutions to collaborate on scientific expeditions targeting the deepwater areas off California, Oregon, and Washington. EXPRESS supports researchers leveraging funding, resources, personnel, and expertise to accomplish more science than would have been possible by a single entity alone. The 2022 expedition included research partners from National Marine Fisheries Service (NMFS) Southwest Fisheries Science Center (SWFSC) and Northwest Fisheries Science Center (NWFSC), Bureau of Ocean Energy Management (BOEM), U.S. Geological Survey (USGS), Pacific Fisheries Management Council Habitat Committee, and Woods Hole Oceanographic Institution.

Report↗

Catch-and-release science and its application to conservation and management of recreational fisheries

Catch-and-release angling is a well-established practice in recreational angler behaviour and fisheries management. Accompanying this is a growing body of catch-and-release research that can be applied to reduce injury, mortality and sublethal alterations in behaviour and physiology. Here, the status of catch-and-release research from a symposium on the topic is summarised. Several general themes emerged including the need to: (1) better connect sublethal assessments to population-level processes; (2) enhance understanding of the variation in fish, fishing practices and gear and their role in catch and release; (3) better understand animal welfare issues related to catch and release; (4) increase the exchange of information on fishing-induced stress, injury and mortality between the recreational and commercial fishing sectors; and (5) improve procedures for measuring and understanding the effect of catch-and-release angling. Through design of better catch-and-release studies, strategies could be developed to further minimise stress, injury and mortality arising from catch-and-release angling. These strategies, when integrated with other fish population and fishery characteristics, can be used by anglers and managers to sustain or enhance recreational fishing resources. ?? 2007 The Authors. Journal compilation 2007 Blackwell Publishing Ltd.

Fisheries Management and Ecology↗