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At least 469 records · Page 26Linked to original sources
USGS2014

Determination of human-use pharmaceuticals in filtered water by direct aqueous injection: high-performance liquid chromatography/tandem mass spectrometry

This report describes a method for the determination of 110 human-use pharmaceuticals using a 100-microliter aliquot of a filtered water sample directly injected into a high-performance liquid chromatograph coupled to a triple-quadrupole tandem mass spectrometer using an electrospray ionization source operated in the positive ion mode. The pharmaceuticals were separated by using a reversed-phase gradient of formic acid/ammonium formate-modified water and methanol. Multiple reaction monitoring of two fragmentations of the protonated molecular ion of each pharmaceutical to two unique product ions was used to identify each pharmaceutical qualitatively. The primary multiple reaction monitoring precursor-product ion transition was quantified for each pharmaceutical relative to the primary multiple reaction monitoring precursor-product transition of one of 19 isotope-dilution standard pharmaceuticals or the pesticide atrazine, using an exact stable isotope analogue where possible. Each isotope-dilution standard was selected, when possible, for its chemical similarity to the unlabeled pharmaceutical of interest, and added to the sample after filtration but prior to analysis. Method performance for each pharmaceutical was determined for reagent water, groundwater, treated drinking water, surface water, treated wastewater effluent, and wastewater influent sample matrixes that this method will likely be applied to. Each matrix was evaluated in order of increasing complexity to demonstrate (1) the sensitivity of the method in different water matrixes and (2) the effect of sample matrix, particularly matrix enhancement or suppression of the precursor ion signal, on the quantitative determination of pharmaceutical concentrations. Recovery of water samples spiked (fortified) with the suite of pharmaceuticals determined by this method typically was greater than 90 percent in reagent water, groundwater, drinking water, and surface water. Correction for ambient environmental concentrations of pharmaceuticals hampered the determination of absolute recoveries and method sensitivity of some compounds in some water types, particularly for wastewater effluent and influent samples. The method detection limit of each pharmaceutical was determined from analysis of pharmaceuticals fortified at multiple concentrations in reagent water. The calibration range for each compound typically spanned three orders of magnitude of concentration. Absolute sensitivity for some compounds, using isotope-dilution quantitation, ranged from 0.45 to 94.1 nanograms per liter, primarily as a result of the inherent ionization efficiency of each pharmaceutical in the electrospray ionization process. Holding-time studies indicate that acceptable recoveries of pharmaceuticals can be obtained from filtered water samples held at 4 °C for as long as 9 days after sample collection. Freezing samples to provide for storage for longer periods currently (2014) is under evaluation by the National Water Quality Laboratory.

Techniques and Methods↗
USGS2000

The land cover trends project: A strategy for monitoring land cover change at a national scale

Policy-makers and scientists often require comprehensive data on the types and rates of land use and land cover change at a variety of scales. However, there is generally a lack of local, regional, and national land use and land cover data of sufficient reliability and temporal and geographic detail for providing accurate estimates of landscape change. The U.S. Geological Survey's EROS Data Center and the Landscape Ecology Branch of the U.S. Environmental Protection Agency are collaborating on a four-year research project to document the types, distributions, rates, drivers, and consequences of land cover change for the conterminous United States over the past 30 years. The project is using an ecoregion framework as a geographic stratifier. Both regional and national characteristics of change are determined by sampling land cover change for each of 84 ecoregions using five selected epochs of data from the nearly 30-year record of Landsat 1-7 data. Three types of land cover variables are being mapped or derived: (1) general land cover type; (2) landscape biophysical properties; and (3) landscape pattern. Assessments of the drivers and consequences of change within each ecoregion are then prepared. A pilot phase focusing on the analysis of five selected ecoregions is well underway and will be completed by the end of 2000. Methodologies established during the pilot phase will then be applied to the remaining ecoregions.

Conference Paper↗
USGS2024

Evaluation of data collected by Guam Division of Aquatic and Wildlife Resources during population establishment and monitoring of ko'ko' (Hypotaenidia owstoni) on Rota, Commonwealth of the Northern Mariana Islands, and wildlife monitoring datasets on Cocos Island and Guam

Efforts to recover the critically endangered ko’ko’ (Guam rail, Hypotaenidia owstoni) through establishing an experimental population on the island of Rota in the Commonwealth of the Northern Mariana Islands have been ongoing for three decades. The U.S. Geological Survey collaborated with the Guam Division of Aquatic and Wildlife Resources and the Government of Guam to evaluate whether objectives for three projects can be met with current protocols. The aim of this report was to evaluate existing data provided on (1) ko’ko’ population monitoring on Rota; (2) ko’ko’ population establishment on Rota; plus (3) evaluation of three wildlife monitoring datasets for ko’ko’ on Cocos Island, endangered pulattat (Mariana common moorhen, Gallinula chloropus guami) on Guam, and introduced ungulate species on Guam. Data sources included playback call surveys, point count surveys, release events and studbook information, telemetry of radio-marked birds, as well as landcover classes, storm events, and Oceanic Niño Index information to relate environmental factors to ko’ko’ persistence. Major findings were that reaching objectives was constrained by limited data availability and quality. Suggestions for future study include developing detailed protocols for surveys and data collection, standardizing training procedures for observers, improving data organization and archiving, using methods like distance sampling that account for imperfect detection, and collecting additional data on nests and prey resources to understand drivers of ko’ko’ density and survival. While the current data provide a preliminary assessment, improved sampling designs and consistent protocols are needed to fully address objectives related to the recovery of the ko’ko’. The report provides a roadmap for enhancing data collection and analysis to support management decisions and reach conservation translocation goals about this endangered species and related projects.

Guam, Mariana Islands↗
USGS2015

Effect of land-applied biosolids on surface-water nutrient yields and groundwater quality in Orange County, North Carolina

Land application of municipal wastewater biosolids is the most common method of biosolids management used in North Carolina and the United States. Biosolids have characteristics that may be beneficial to soil and plants. Land application can take advantage of these beneficial qualities, whereas disposal in landfills or incineration poses no beneficial use of the waste. Some independent studies and laboratory analysis, however, have shown that land-applied biosolids can pose a threat to human health and surface-water and groundwater quality. The effect of municipal biosolids applied to agriculture fields is largely unknown in relation to the delivery of nutrients, bacteria, metals, and contaminants of emerging concern to surface-water and groundwater resources. Therefore, the North Carolina Department of Environment and Natural Resources (NCDENR) collaborated with the U.S. Geological Survey (USGS) through the 319 Nonpoint Source Program to better understand the transport of nutrients and bacteria from biosolids application fields to groundwater and surface water and to provide a scientific basis for evaluating the effectiveness of the current regulations. The USGS conducted a paired agricultural watershed study in the Collins Creek and Cane Creek Reservoir watersheds in Orange County, North Carolina. Field activities were conducted from March 2011 through May 2013 at two field study sites, including biosolids field application sites owned by Orange County Water and Sewer Authority (OWASA) in the Collins Creek watershed and a background study site in the Cane Creek watershed that has no fields receiving biosolids applications. Samples of biosolids source material and soil were collected from the land-application fields for laboratory analyses. Soil samples were also collected from a background agricultural field in the Cane Creek watershed that has never received land-applied municipal biosolids. Shallow groundwater samples were collected quarterly from new monitoring wells installed by NCDENR along the edge of the biosolids land-application fields and a background agricultural field for laboratory analyses. Two surface-water monitoring sites were established on Collins Creek to compute continuous streamflow and collect discrete baseflow and stormwater runoff water-quality data upstream and downstream from the biosolids land-application fields. Surface water-quality samples were also collected for baseflow and stormwater runoff conditions at an existing USGS streamgage on Cane Creek to monitor water-quality conditions in the background study watershed. The study primarily focused on nutrients and bacteria; however, data for field properties and water-quality constituents, including metals, major ions, and contaminants of emerging concern (household-, industrial-, and agricultural-use compounds, pharmaceutical compounds, hormones, and antibiotics) also were collected and used in the analyses. There were no exceedances of the 10 elements with designated U.S. Environmental Protection Agency (EPA) ceiling concentrations for land-applied biosolids in any of the biosolids samples. Treatment processes and storage techniques used by OWASA are effective in eliminating Escherichia coli and fecal coliform bacteria from biosolids. Copper, molybdenum, total Kjeldahl nitrogen, and total phosphorus were elevated in the soil from biosolids land-application fields relative to the background field. The relative richness of these constituents in the biosolids land-application fields is consistent with biosolids being the source of the elevated concentrations given the relatively high concentrations of these constituents in the biosolids samples that were collected. Shallow groundwater in the transitional zone wells, which were located adjacent to and topographically downgradient from all the biosolids land-application fields, were found to be statistically different and had higher nitrate concentrations (medians greater than 12 milligrams per liter) than all the other wells sampled as part of the study. Surface-water nutrient concentrations and yields, primarily nitrate, were higher at the monitoring site on Collins Creek downstream from the biosolids land-application fields than the other study sites that drained watersheds without biosolids land application. The largest differences in concentrations between sites were measured at baseflow conditions, which indicate that the main cause of these differences, particularly between Cane Creek and the Collins Creek site downstream from the OWASA application fields, is related to nitrate contribution from the shallow groundwater. Contaminants of emerging concern were detected in approximately 40 percent of the laboratory analyses of the biosolids samples and more frequently in soil samples from the biosolids land-application fields (approximately 40 percent of laboratory analyses) relative to the soil samples from the background field (approximately 12 percent of laboratory analyses). However, contaminants of emerging concern detected in the laboratory analysis for this study do not appear to be good indicators of human-waste contaminants derived from land-applied biosolids in groundwater or surface-water because the number of detections and concentrations at the background wells and surface-water monitoring sites are similar to or higher than those at wells and monitoring sites adjacent to or downstream from the biosolids land-application fields. The data, analysis, and conclusions associated with this study can be used by regulatory agencies, resource managers, and wastewater-treatment operators to (1) better understand the quantity and characteristics of nutrients, bacteria, metals, and contaminants of emerging concern that are transported away from biosolids land-application fields to surface water and groundwater under current regulations for the purposes of establishing effective total maximum daily loads (TMDLs) and restoring impaired water resources, (2) assess how well existing regulations protect waters of the State and potentially recommend effective changes to regulations or land-application procedures, and (3) establish a framework for developing guidance on effective techniques for monitoring and regulatory enforcement of permitted biosolids land-application fields.

North Carolina↗
USGS2016

Concentration trends for lead and calcium-normalized lead in fish fillets from the Big River, a mining-contaminated stream in southeastern Missouri USA

Lead (Pb) and calcium (Ca) concentrations were measured in fillet samples of longear sunfish (Lepomis megalotis) and redhorse suckers (Moxostoma spp.) collected in 2005–2012 from the Big River, which drains a historical mining area in southeastern Missouri and where a consumption advisory is in effect due to elevated Pb concentrations in fish. Lead tends to accumulated in Ca-rich tissues such as bone and scale. Concentrations of Pb in fish muscle are typically low, but can become elevated in fillets from Pb-contaminated sites depending in part on how much bone, scale, and skin is included in the sample. We used analysis-of-covariance to normalize Pb concentration to the geometric mean Ca concentration (415 ug/g wet weight, ww), which reduced variation between taxa, sites, and years, as was the number of samples that exceeded Missouri consumption advisory threshold (300 ng/g ww). Concentrations of Pb in 2005–2012 were lower than in the past, especially after Ca-normalization, but the consumption advisory is still warranted because concentrations were >300 ng/g ww in samples of both taxa from contaminated sites. For monitoring purposes, a simple linear regression model is proposed for estimating Ca-normalized Pb concentrations in fillets from Pb:Ca molar ratios as a way of reducing the effects of differing preparation methods on fillet Pb variation.

Missouri↗
USGS2002

Modeling enhanced in situ denitrification in groundwater

A two-dimensional numerical solute transport model was developed for simulating an enhanced in situ denitrification experiment performed in a nitrate-contaminated aquifer on Cape Cod, Massachusetts. In this experiment, formate ( HCOO - ) "> (HCOO-) was injected for a period of 26 days into the carbon-limited aquifer to stimulate denitrification. Calibration of the vertical-profile site model was demonstrated through error analysis and comparison with formate, nitrate, and nitrite concentration data monitored along a transect of three multilevel groundwater sampling wells for 75 days after initial injection. Formate utilization rates were approximately 142 and 38 μM/day for nitrate and nitrite reduction, respectively. Nitrate and nitrite utilization rates were approximately 29 and 8 μM/day, respectively. Nitrate utilization rates under enhanced conditions were 1 order of magnitude greater than previously reported naturally occurring rates. The nitrite production rate was approximately 29 μM/day. Persistence of nitrite was attributed to a combination of factors, including electron donor (formate) limitation late in the experiment, preferential utilization of nitrate as an electron acceptor, and greater nitrite production relative to nitrite utilization.

Journal of Environmental Engineering↗
USGS2021

Avoidance of cold-, cool-, and warm-water fishes to Zequanox® exposure

Zequanox® is a biopesticide registered by the U.S. Environmental Protection Agency (USEPA) and the Canadian Pest Management Regulatory Agency for controlling dreissenid mussels with demonstrated selective toxicity. However, some research has indicated that Zequanox may impact the body condition and survival of some non-target species. We assessed avoidance behaviors of two species of cold-, cool-, and warm-water fishes to Zequanox at the maximum concentration allowed by the USEPA label (100 mg/L as active ingredient). Naïve, juvenile fish (n = 30 per species) were individually observed in a two-flume choice tank through which Zequanox-treated and untreated water simultaneously flowed in an unobstructed arena. Individual fish were observed during an untreated control period (20 min) and two Zequanox-exposure periods (20 min each). Treatment was alternated between arena sides to account for potential side bias in the test subjects. Positional data were collected and tabulated in real time with EthoVision® XT software. Zequanox concentrations and water quality properties (pH, dissolved oxygen, temperature, and specific conductance) were monitored during each trial. Analysis of treatment response was performed using a contrast within linear mixed-effects models. Our results indicate that Brook Trout, Lake Trout, and Bluegill avoided Zequanox-treated water, Yellow Perch were indifferent to Zequanox-treated water, and Lake Sturgeon and Fathead Minnow were attracted to Zequanox-treated water. These results combined with existing species sensitivity literature may help inform resource managers of potential treatment-related risks.

Management of Biological Invasions↗
USGS2011

Avian influenza shedding patterns in waterfowl: implications for surveillance, environmental transmission, and disease spread

Despite the recognized importance of fecal/oral transmission of low pathogenic avian influenza (LPAI) via contaminated wetlands, little is known about the length, quantity, or route of AI virus shed by wild waterfowl. We used published laboratory challenge studies to evaluate the length and quantity of low pathogenic (LP) and highly pathogenic (HP) virus shed via oral and cloacal routes by AI-infected ducks and geese, and how these factors might influence AI epidemiology and virus detection. We used survival analysis to estimate the duration of infection (from virus inoculation to the last day virus was shed) and nonlinear models to evaluate temporal patterns in virus shedding. We found higher mean virus titer and longer median infectious period for LPAI-infected ducks (10–11.5 days in oral and cloacal swabs) than HPAI-infected ducks (5 days) and geese (7.5 days). Based on the median bird infectious dose, we found that environmental contamination is two times higher for LPAI- than HPAI-infectious ducks, which implies that susceptible birds may have a higher probability of infection during LPAI than HPAI outbreaks. Less environmental contamination during the course of infection and previously documented shorter environmental persistence for HPAI than LPAI suggest that the environment is a less favorable reservoir for HPAI. The longer infectious period, higher virus titers, and subclinical infections with LPAI viruses favor the spread of these viruses by migratory birds in comparison to HPAI. Given the lack of detection of HPAI viruses through worldwide surveillance, we suggest monitoring for AI should aim at improving our understanding of AI dynamics (in particular, the role of the environment and immunity) using long-term comprehensive live bird, serologic, and environmental sampling at targeted areas. Our findings on LPAI and HPAI shedding patterns over time provide essential information to parameterize environmental transmission and virus spread in predictive epizootiologic models of disease risks.

Journal of Wildlife Diseases↗
USGS2023

Integrated analysis shows how the effects of extreme flooding events propagate through fish communities to impact amphibians

Research Highlight: Davis, C. L., Walls, S. C., Barichivich, W. J., Brown, M. E., & Miller, D. A. (2022). Disentangling direct and indirect effects of extreme events on coastal wetland communities. Journal of Animal Ecology , https://doi.org/10.1111/1365-2656.13874 . Catastrophic events such as floods, hurricanes, winter storms, droughts and wildfires increasingly touch our lives either directly or indirectly. These events draw our attention to the seriousness of changes in climate not only to human well-being but also to the integrity of ecological systems upon which we depend. Understanding the impacts of extreme events on ecological systems requires the ability to characterize the cascading effects of environmental changes on the environments in which organisms live and the altered biological interactions produced. This scientific ambition represents no small challenge for the study of animal communities, which are typically difficult to census as well as dynamic in time and space. Davis et al. (2022) in a recent study in the Journal of Animal Ecology examined the amphibian and fish communities found in depressional coastal wetlands to better understand how they respond to major rainfall and flooding events. Data from the U.S. Geological Survey's Amphibian Research and Monitoring Initiative provided an 8-year record of observations as well as environmental measurements. For this study, the authors integrated techniques for assessing the dynamics of animal populations with a Bayesian implementation of structural equation modelling. Using their integrated methodological approach permitted the authors to reveal the direct and indirect effects of extreme weather events on co-occurring amphibian and fish communities while accounting for observational uncertainty and temporal variation in population-level processes. Their findings indicate that the most prominent effects of flooding on the amphibian community were caused by changes in the fish community that led to increased predation and resource competition. In their conclusions, the authors emphasize the importance of understanding networks of abiotic and biotic effects if we are to predict and mitigate the influence of extreme weather events.

Journal of Animal Ecology↗
USGS1998

Surfactant-enhanced remediation of a trichloroethene-contaminated aquifer. 2. Transport of TCE

Field studies were conducted under an induced gradient in a trichloroethene (TCE)-contaminated aquifer at Picatinny Arsenal, NJ, to study (a) the rate-limited desorption of TCE from aquifer sediments to water and (b) the effect of a surfactant (Triton X-100) on the desorption and transport of TCE. Clean water was injected into the contaminated aquifer for 206 day. Triton X-100 was added for a 36-day period (days 36-71 from the start of clean water injection). The effect of Triton X-100 on the desorption and transport of TCE in the field was examined by observing the concentrations of these two solutes in four monitoring wells 3-9 m from the injection wells. These data show a small but discernible increase in the TCE concentration in two of the wells corresponding approximately to the time when surfactant reaches the wells; in the other two monitoring wells, the increase in TCE concentration is negligible. A solute transport model that assumes local sorption equilibrium and used a laboratory-derived distribution coefficient could not adequately describe TCE desorption and transport observed in the aquifer. Two model formulations that accounted for rate-limited sorption - two-site and multisite models - fit the data well. TCE concentrations after surfactant injection were underpredicted by the models unless mass transfer rate was increased to account for the effect of surfactant on the rate of TCE desorption. The concentration data from the two wells and the model analysis suggest that the rate of TCE desorption is increased (by approximately 30%) as a result of Triton X-100 injection.Field studies were conducted under an induced gradient in a trichloroethene (TCE)-contaminated aquifer at Picatinny Arsenal, NJ, to study (a) the rate-limited desorption of TCE from aquifer sediments to water and (b) the effect of a surfactant (Triton X-100) on the desorption and transport of TCE. Clean water was injected into the contaminated aquifer for 206 day. Triton X-100 was added for a 36-day period (days 36-71 from the start of clean water injection). The effect of Triton X-100 on the desorption and transport of TCE in the field was examined by observing the concentrations of these two solutes in four monitoring wells 3-9 m from the injection wells. These data show a small but discernible increase in the TCE concentration in two of the wells corresponding approximately to the time when surfactant reaches the wells; in the other two monitoring wells, the increase in TCE concentration is negligible. A solute transport model that assumes local sorption equilibrium and used a laboratory-derived distribution coefficient could not adequately describe TCE desorption and transport observed in the aquifer. Two model formulations that accounted for rate-limited sorption - two-site and multisite models - fit the data well. TCE concentrations after surfactant injection were underpredicted by the models unless mass transfer rate was increased to account for the effect of surfactant on the rate of TCE desorption. The concentration data from the two wells and the model analysis suggest that the rate of TCE desorption is increased (by approximately 30%) as a result of Triton X-100 injection.

Environmental Science & Technology↗
USGS1990

Applicability of ambient toxicity testing to national or regional water-quality assessment

Comprehensive assessment of the quality of natural waters requires a multifaceted approach. Descriptions of existing conditions may be achieved by various kinds of chemical and hydrologic analyses, whereas information about the effects of such conditions on living organisms depends on biological monitoring. Toxicity testing is one type of biological monitoring that can be used to identify possible effects of toxic contaminants. Based on experimentation designed to monitor responses of organisms to environmental stresses, toxicity testing may have diverse purposes in water-quality assessments. These purposes may include identification of areas that warrant further study because of poor water quality or unusual ecological features, verification of other types of monitoring, or assessment of contaminant effects on aquatic communities. Toxicity-test results are most effective when used as a complement to chemical analyses, hydrologic measurements, and other biological monitoring. However, all toxicity-testing procedures have certain limitations that must be considered in developing the methodology and applications of toxicity testing in any large-scale water-quality-assessment program. A wide variety of toxicity-test methods have been developed to fulfill the needs of diverse applications. The methods differ primarily in the selections made relative to four characteristics: (1) test species, (2) endpoint (acute or chronic), (3) test-enclosure type, and (4) test substance (toxicant) that functions as the environmental stress. Toxicity-test approaches vary in their capacity to meet the needs of large-scale assessments of existing water quality. Ambient testing, whereby the test organism is exposed to naturally occurring substances that contain toxicant mixtures in an organic or inorganic matrix, is more likely to meet these needs than are procedures that call for exposure of the test organisms to known concentrations of a single toxicant. However, meaningful interpretation of ambient test results depends on the existence of accompanying chemical analysis of the ambient media. The ambient test substance may be water or sediments. Sediment tests have had limited application, but they are useful because most toxicants tend to accumulate in sediments and many test species either inhabit the sediments or are in frequent contact with them. Biochemical testing methods, which have been developing rapidly in recent years, are likely to be among the most useful procedures for large-scale water-quality assessments. They are relatively rapid and simple, and more. importantly, they focus on biochemical changes that are the initial responses of virtually all organisms to environmental stimuli. Most species are sensitive to relatively few toxicants, and their sensitivities vary as conditions change. Therefore, each test method has particular uses and limitations, and no single test has universal applicability. One of the most informative approaches to toxicity testing is to combine biochemical tests with other test methods in a 'battery of tests' that is diversified enough to characterize different types of toxicants and different trophic levels. However, such an approach can be costly, and if not carefully designed, it may not yield enough additional information to warrant the additional cost. The application of toxicity tests to large-scale water-quality assessments is hampered by a number of difficulties. Toxicity tests often are not sensitive enough to enable detection of most contaminant problems in the natural environment. Furthermore, because sensitivities among different species and test conditions can be highly variable, conclusions about the toxicant problems of an ecosystem are strongly dependent on the test procedure used. In addition, the experimental systems used in toxicity tests cannot replicate the complexity or variability of natural conditions, and positive test results cannot identify the source or nature of

Circular↗
USGS2022

Synthetic aperture radar volcanic flow maps (SAR VFMs): A simple method for rapid identification and mapping of volcanic mass flows

Volcanic mass flows, including lava, pyroclastic density currents, and lahars, account for the bulk of fatalities and infrastructure damage caused by volcanic eruptions. Mapping these flows soon after their emplacement is vital to understanding their impact and to forecasting the likely behavior of potential future flows. Synthetic aperture radar (SAR) can provide useful information about surface properties and changes regardless of environmental conditions or time of day, but no individual SAR product can unambiguously detect and map surface mass flows in all conditions. Combining SAR products, however, can capitalize on the strengths and compensate for the weaknesses of individual data types. SAR volcanic flow maps (SAR VFMs) merge cross-polarized amplitude imagery from two different dates with interferometric coherence spanning those dates. The combination of amplitude change with coherence provides a means of detecting volcanic mass flows regardless of surface conditions, and data collected by satellite provide the spatial coverage needed to detect changes over broad areas. Application to eruptions of Kīlauea (Hawaiʻi), Nyiragongo (Democratic Republic of Congo), Sinabung (Indonesia), and Fuego (Guatemala) demonstrate the value of SAR VFMs for monitoring hazardous volcanic activity, and the importance of acquiring cross-polarized satellite SAR imagery for volcano applications. The ever-growing number of public and private satellite SAR missions will provide for improved temporal resolution in SAR VFMs in the future, and the technique may be suitable for automated analysis that is capable of timely identification of changes due to volcanic activity, even in areas that are otherwise unmonitored.

Hawaii↗
USGS2019

Mapping research on hydropower and sustainability in the Brazilian Amazon: Advances, gaps in knowledge and future directions

In the last twenty years, multiple large and small hydroelectric dams have begun to transform the Amazonian region, spawning a growing volume of academic research across diverse disciplinary and interdisciplinary fields. In this article, we offer a critical review of recent research related to hydropower and sustainability with a focus on the Brazilian Amazon. We revisit the sustainability concept to include the contribution of various knowledge fields and perspectives for understanding, managing and making decisions about social-ecological systems transformed by dams. We conducted a literature review in Web of Science of academic publications centered in the past 5 years (2014–2019), on diverse aspects of hydropower planning, construction, operation and monitoring in the Brazilian Amazon. We present results of a co-occurrence network analysis of publications, highlighting bridging fields, network disconnections, and opportunities for interdisciplinary research. Finally, we report recent advances in the understanding and management of social-ecological systems in Amazonian watersheds, including biophysical, socio-economic, governance and development processes linked to hydropower planning and implementation. This review identifies knowledge gaps and future research directions, highlighting opportunities for improved communication among scientists, practitioners, decision-makers, indigenous peoples and local communities.

Amazon↗
USGS2007

The microbial community structure in petroleum-contaminated sediments corresponds to geophysical signatures

The interdependence between geoelectrical signatures at underground petroleum plumes and the structures of subsurface microbial communities was investigated. For sediments contaminated with light non-aqueousphase liquids, anomalous high conductivity values have been observed. Vertical changes in the geoelectrical properties of the sediments were concomitant with significant changes in the microbial community structures as determined by the construction and evaluation of 16S rRNA gene libraries. DNA sequencing of clones from four 16S rRNA gene libraries from different depths of a contaminated field site and two libraries from an uncontaminated background site revealed spatial heterogeneity in the microbial community structures. Correspondence analysis showed that the presence of distinct microbial populations, including the various hydrocarbon-degrading, syntrophic, sulfate-reducing, and dissimilatory-iron-reducing populations, was a contributing factor to the elevated geoelectrical measurements. Thus, through their growth and metabolic activities, microbial populations that have adapted to the use of petroleum as a carbon source can strongly influence their geophysical surroundings. Since changes in the geophysical properties of contaminated sediments parallel changes in the microbial community compositions, it is suggested that geoelectrical measurements can be a cost-efficient tool to guide microbiological sampling for microbial ecology studies during the monitoring of natural or engineered bioremediation processes. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗
USGS2006

Development of a murre (Uria spp.) egg control material

The Seabird Tissue Archival and Monitoring Project (STAMP) is a collaborative Alaska-wide effort by the US Fish and Wildlife Service's Alaska Maritime National Wildlife Refuge (USFWS/AMNWR), the US Geological Survey's Biological Resources Division (USGS/BRD), the Bureau of Indian Affairs Alaska Region Subsistence Branch (BIA/ARSB), and the National Institute of Standards and Technology (NIST) to monitor long-term (decadal) trends in environmental contaminants using seabird eggs. To support this effort, a matrix- (seabird egg) and concentration-specific control material was needed to ensure quality during analytical work. Although a herring gull egg quality assurance (HGQA) material is available from Environment Canada (EC), contaminant concentrations in this material tended to be higher than those observed in Alaskan murre (Uria spp.) eggs. Therefore, to prepare a more appropriate control material, a total of 12 common murre (U. aalge) and thick-billed murre (U. lomvia) eggs from four Bering Sea and Gulf of Alaska nesting locations were cryohomogenized to create 190 aliquots each containing approximately 6 g. This new control material was analyzed by different methods at NIST and EC facilities for the determination of concentrations and value assignment of 63 polychlorinated biphenyl (PCB) congeners, 20 organochlorine pesticides, and 11 polybrominated diphenyl ether (PBDE) congeners. The total PCB concentration is approximately 58 ng g -1 wet mass. Results obtained for analytes not listed on the certificates of analysis of the previously used control materials, HGQA and NIST's Standard Reference Material (SRM) 1946 Lake Superior Fish Tissue, are also presented. [Figure not available: see fulltext.]. ?? Springer-Verlag 2007.

Conference Paper↗
USGS2025

Simulated soundscapes and transfer learning boost the performance of acoustic classifiers under data scarcity

1. The biodiversity crisis necessitates spatially extensive methods to monitor multiple taxonomic groups for evidence of change in response to evolving environmental conditions. Programs that combine passive acoustic monitoring and machine learning are increasingly used to meet this need. These methods require large, annotated datasets, which are time-consuming and expensive to produce, creating potential barriers to adoption in data- and funding-poor regions. Recently released pre-trained avian acoustic classification models provide opportunities to reduce the need for manual labelling and accelerate the development of new acoustic classification algorithms through transfer learning. Transfer learning is a strategy for developing algorithms under data scarcity that uses pre-trained models from related tasks to adapt to new tasks. 2. Our primary objective was to develop a transfer learning strategy using the feature embeddings of a pre-trained avian classification model to train custom acoustic classification models in data-scarce contexts. We used three annotated avian acoustic datasets to test whether transfer learning and soundscape simulation-based data augmentation could substantially reduce the annotated training data necessary to develop performant custom acoustic classifiers. We also conducted a sensitivity analysis for hyperparameter choice and model architecture. We then assessed the generalizability of our strategy to increasingly novel non-avian classification tasks. 3. With as few as two training examples per class, our soundscape simulation data augmentation approach consistently yielded new classifiers with improved performance relative to the pre-trained classification model and transfer learning classifiers trained with other augmentation approaches. Performance increases were evident for three avian test datasets, including single-class and multi-label contexts. We observed that the relative performance among our data augmentation approaches varied for the avian datasets and nearly converged for one dataset when we included more training examples. 4. We demonstrate an efficient approach to developing new acoustic classifiers leveraging open-source sound repositories and pre-trained networks to reduce manual labelling. With very few examples, our soundscape simulation approach to data augmentation yielded classifiers with performance equivalent to those trained with many more examples, showing it is possible to reduce manual label-ling while still achieving high-performance classifiers and, in turn, expanding the potential for passive acoustic monitoring to address rising biodiversity monitoring needs.

Methods in Ecology and Evolution↗
USGS2009

Floods of Selected Streams in Arkansas, Spring 2008

Floods can cause loss of life and extensive destruction to property. Monitoring floods and understanding the reasons for their occurrence are the responsibility of many Federal agencies. The National Weather Service, the U.S. Army Corps of Engineers, and the U.S. Geological Survey are among the most visible of these agencies. Together, these three agencies collect and analyze floodflow information to better understand the variety of mechanisms that cause floods, and how the characteristics and frequencies of floods vary with time and location. The U.S. Geological Survey (USGS) has monitored and assessed the quantity of streamflow in our Nation's streams since the agency's inception in 1879. Because of ongoing collection and assessment of streamflow data, the USGS can provide information about a range of surface-water issues including the suitability of water for public supply and irrigation and the effects of agriculture and urbanization on streamflow. As part of its streamflow-data collection activities, the USGS measured streamflow in multiple streams during extreme flood events in Arkansas in the spring of 2008. The analysis of streamflow information collected during flood events such as these provides a scientific basis for decision making related to resource management and restoration. Additionally, this information can be used by water-resource managers to better define flood-hazard areas and to design bridges, culverts, dams, levees, and other structures. Water levels (stage) and streamflow (discharge) currently are being monitored in near real-time at approximately 150 locations in Arkansas. The streamflow-gaging stations measure and record hydrologic data at 15-minute or hourly intervals; the data then are transmitted through satellites to the USGS database and displayed on the internet every 1 to 4 hours. Streamflow-gaging stations in Arkansas are part of a network of over 7,500 active streamflow-gaging stations operated by the USGS throughout the United States in cooperation with other Federal, State, and local government agencies. In Arkansas, the major supporters of the streamflow-gaging network are the U.S. Army Corps of Engineers, Arkansas Natural Resources Commission, Arkansas Department of Environmental Quality, and Arkansas Geological Survey. Many other Federal, State, and local government entities provide additional support for streamflow-gaging stations. It is the combined support of the USGS and all funding partners that make it possible to maintain an adequate streamflow-gaging network in Arkansas. Data collected over the years at streamflow-gaging stations can be used to characterize the relative magnitude of flood events and their statistical frequency of occurrence. These analyses provide water-resource managers with accurate and reliable hydrologic information based on present and historical flow conditions. Continued collection of streamflow data, with consideration of changes in land use, agricultural practices, and climate change, will help scientists to more accurately characterize the magnitude of extreme floods in the future.

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USGS2019

Environmental DNA sampling reveals high occupancy rates of invasive Burmese pythons at wading bird breeding aggregations in the central Everglades

The Burmese python ( Python bivittatus ) is now established as a breeding population throughout south Florida, USA. However, the extent of the invasion, and the ecological impacts of this novel apex predator on animal communities are incompletely known, in large part because Burmese pythons (hereafter “pythons”) are extremely cryptic and there has been no efficient way to detect them. Pythons are recently confirmed nest predators of long-legged wading bird breeding colonies (orders Ciconiiformes and Pelecaniformes). Pythons can consume large quantities of prey and may not be recognized as predators by wading birds, therefore they could be a particular threat to colonies. To quantify python occupancy rates at tree islands where wading birds breed, we utilized environmental DNA (eDNA) analysis—a genetic tool which detects shed DNA in water samples and provides high detection probabilities. We fitted multi-scale Bayesian occupancy models to test the prediction that pythons occupy islands with wading bird colonies at higher rates compared to representative control islands containing no breeding birds. Our results suggest that pythons are widely distributed across the central Everglades in proximity to active wading bird colonies. In support of our prediction that pythons are attracted to colonies, site-level python eDNA occupancy rates were higher at wading bird colonies (ψ = 0.88, 95% credible interval [0.59–1.00]) than at the control islands (ψ = 0.42 [0.16–0.80]) in April through June (n = 15 colony-control pairs). We found our water temperature proxy (time of day) to be informative of detection probability, in accordance with other studies demonstrating an effect of temperature on eDNA degradation in occupied samples. Individual sample concentrations ranged from 0.26 to 38.29 copies/μL and we generally detected higher concentrations of python eDNA in colony sites. Continued monitoring of wading bird colonies is warranted to determine the effect pythons are having on populations and investigate putative management activities.

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