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Integrating Sr isotopes, microchemistry, and genetics to reconstruct Salmonidae species and life history

Recent approaches to fisheries research emphasize the importance of the coproduction of knowledge in building resilient and culturally mindful fisheries management frameworks. Despite widespread recognition of the need for Indigenous knowledge and historical reference points as baseline data, archaeological data are rarely included in conservation biology research designs. Here we propose a novel multiproxy method to learn from former fisheries stewards by generating archaeological data on past salmonid population parameters. We used a newly developed, high throughput qPCR (HT-qPCR) chip, originally designed for environmental DNA (eDNA), for species identification of archaeological salmonid vertebrae. We combine this with the laser ablation split-stream (LASS) approach to identify ocean-migration versus freshwater residency. We test this multidisciplinary approach using both contemporary and archaeological salmonid samples and new radiocarbon dates from the Tronsdal Site on the Skagit River, Washington State, USA. This is a useful approach for extracting information about Salmonidae species and life history diversity from archaeological remains to reconstruct historic baselines for several population parameters in anadromous species with long periods of freshwater residency. The approach outlined in this paper may be particularly useful for research investigating past fisheries dynamics, offering hundreds to thousands of years of temporal depth for modern fisheries management, harvest policies, restoration ecology, and conservation biology.

Idaho, Oregon, Washington

Spatial distribution of API gravity and gas/oil ratios for petroleum accumulations in Upper Cretaceous strata of the San Miguel, Olmos, and Escondido Formations of the south Texas Maverick Basin—Implications for petroleum migration and charge history

The Maverick Basin of south Texas is currently undergoing active exploration and production of gas and oil from tight sandstone reservoirs. The most productive tight sandstones in the basin are in the Upper Cretaceous San Miguel, Olmos, and Escondido Formations. These units are second only to the Eagle Ford Shale in terms of cumulative production volumes. The structural history of the Maverick Basin, from rifting to subsidence to exhumation, has had a profound effect on the characteristics of these reservoirs and the petroleum resources contained therein. This U.S. Geological Survey review of the production history of these strata reflects a recent shift from conventional production to horizontal drilling (unconventional) that exploits low permeability reservoirs in previously overlooked areas of existing oil and gas fields in southern Texas, typically outside of established field boundaries. To investigate the physical properties of the Maverick Basin hydrocarbon accumulations, this case study compiled American Petroleum Institute (API) gravity measurements and calculated cumulative gas/oil ratios (GOR) for thousands of producing wells from the San Miguel, Olmos, and Escondido Formations. Maps were generated from the compiled well production data to show the spatial heterogeneity of API gravity and GOR values for the three formations within the Maverick Basin and immediately outside the basin to the northeast. Within the Maverick Basin, the spatial patterns of API gravity values indicate lighter oils downdip towards the southern basin edge. GOR values indicative of wet and dry gases within the basin are seen interspersed, with values that correspond to black and heavy oils. Differences in the spatial patterns of the petroleum properties within the Maverick Basin are interpreted as effects of Eocene basin inversion caused by Laramide orogenic deformation, and the resulting reservoir exhumation of basin strata. East of the Maverick Basin, spatial distributions of API gravity and GOR values show progressively heavier oils updip to the northwest, grading to dry gases downdip to the southeast, which correlates to the oil and gas windows of the underlying Eagle Ford Shale. Correlation of API gravity and GOR values from the San Miguel, Olmos, and Escondido Formations with thermal maturity data from the Eagle Ford Shale suggests that the Eagle Ford Shale is the petroleum source, and that petroleum migration was approximately vertical for areas to the east of the Maverick Basin. The discontinuity of API gravity and GOR properties within the Maverick Basin implies a complex petroleum charge history, possibly involving the remigration of petroleum and the addition of petroleum from other source intervals in Mexico, to the southwest. Depressurization of exhumed, overpressured reservoirs of the San Miguel, Olmos, and Escondido Formations can explain the intermittent occurrence of gas production throughout the southern Maverick Basin by exsolution of gas from formation brines and the resulting dry gas flushing of hydrocarbon-charged reservoirs. The introduction of dry gas through flushing can, in turn, explain why the patterns of API gravity and GOR values are so dissimilar in the Maverick Basin. This process has implications for possible future production of unconventional resources from undiscovered tight-gas reservoirs in strata of the San Miguel, Olmos, and Escondido Formations, and a different approach to petroleum exploration may be needed in the Maverick Basin relative to exploration techniques applied in other basins within the northern Gulf of Mexico.

Texas

Satellite interferometry landslide detection and preliminary tsunamigenic plausibility assessment in Prince William Sound, southcentral Alaska

Regional mapping of actively deforming landslides, including measurements of landslide velocity, is integral for hazard assessments in paraglacial environments. These inventories are also critical for describing the potential impacts that the warming effects of climate change have on slope instability in mountainous and cryospheric terrain. The objective of this study is to identify slow-moving landslides in the Prince William Sound region, southcentral Alaska, United States, which has had rapid deglaciation since the mid-1800s, and assess their tsunamigenic plausibility. We use an automated time series persistent scatterer interferometric synthetic aperture radar processing method with 7 years of Sentinel-1 data (2016–22) to identify 43 slow-moving slopes with average velocities ranging from approximately 0.2 to 21 millimeters per year. Landslide presence is confirmed using aerial imagery and previous landslide inventory records. We assess the tsunamigenic plausibility of the landslides using empirically derived estimates of landslide mobility based on modeled landslide volumes. Of the identified landslides, our preliminary analysis suggests that 11 have tsunamigenic potential if they were to fail rapidly and catastrophically. Although our estimate of tsunamigenic plausibility is preliminary and can be refined with additional observations and analyses, it can be used to prioritize ongoing and future hazard assessment, surveillance, and research efforts.

Alaska

Colored shaded-relief bathymetric and acoustic-backscatter maps of Jenkinson Lake with orthomosaic of the Sly Park Creek and Hazel Creek area, California

The Caldor Fire was ignited on August 14, 2021, and burned almost 222,000 acres (898 square kilometers) in forested terrain of the central and western Sierra Nevada, California. During the subsequent two months, the fire burned nearly all of Sly Park Creek watershed in El Dorado County. The El Dorado Irrigation District manages the water supply for the area using storage in Jenkinson Lake, a 1.6-kilometer- (1.0-mile-) wide and 3.6-kilometer- (2.2-mile-) long reservoir, located south of the town of Pollock Pines. Several weeks after the fire, the U.S. Geological Survey began investigations into post-fire landscape responses, including sediment yield, by measuring new sediment deposition in Jenkinson Lake. This study focused on the collection and processing of bathymetric and acoustic-backscatter data, as well as onshore aerial imagery in and around Jenkinson Lake, to support wildfire science after the Caldor Fire. A colored shaded-relief bathymetric map (sheet 1) and an acoustic backscatter map (sheet 2) show the lake floor morphology and backscatter intensities.

California

PFAS remediation in a bioelectrochemical system inoculated with the west branch consortium (WBC-2)

Groundwater contamination by per - and polyfluoroalkyl substances (PFAS) poses a persistent environmental and public health concern. This study evaluates a two-chambered bioelectrochemical system (BES) inoculated with the West Branch Consortium (WBC-2) for PFAS remediation. Under an applied cathodic potential of −450 mV (versus Ag/AgCl), the BES with active WBC-2 achieved >99.0% perfluorooctanesulfonic acid (PFOS) removal within 21 days in deionized water with culture medium and > 98.9% removal of PFOS, perfluorooctanoic acid (PFOA), perfluorohexanoic acid (PFHxA), and perfluorohexanesulfonic acid (PFHxS) in contaminated groundwater after 102 days. Intermediate formation (e.g., PFOA, 6:2 fluorotelomer sulfonate (6:2 FTS), perfluoropropionic acid (PFPrA), perfluorobutanoic acid (PFBA)) and background-corrected fluoride release were consistent with PFOS transformation under anaerobic reducing conditions potentially involving defluorination. Following repeated PFOS spikes (100 μg/L on Days 0, 50, and 399), PFOA, PFPrA, and PFBA accumulated over 664 days. Despite being the dominant accumulated compound, PFOA accounted for <1.8% of the total spiked PFOS mass. Minimal PFOS transformation occurred in controls without active WBC-2, highlighting the importance of microbial metabolism. Biofilm analysis revealed dense colonization of rod-shaped bacteria on carbon fiber brushes. Enrichment of Bacillus , Agrobacterium , and other low-abundance taxa suggests selective adaptation to BES and PFAS conditions. These findings highlight BES driven by electrochemically stimulated microbial activity as a promising strategy for PFAS remediation.

Journal of Water Process Engineering

Estimating domestic self-supplied water use in Rhode Island, 2014–21

Water withdrawal from private groundwater wells is often unaccounted for in water planning studies, and water from private wells can be a source of exposure to environmental contaminants. The sizes of populations that depend on private wells for domestic water use and the amounts of water that are withdrawn from these wells are generally poorly represented in data collection efforts because of the challenges of locating, metering, or gathering withdrawal information from individual property owners. To address this problem, the U.S. Geological Survey, in cooperation with the Rhode Island Water Resources Board, estimated the volume of water withdrawn from domestic self-supply wells and the populations who use them for the State of Rhode Island at a 30-meter pixel spatial resolution and one-month temporal resolution between July 2014 and June 2021. The number of people reliant on domestic self-supply wells has increased in Rhode Island over the study period; however, the statewide estimate of total water withdrawal has not statistically increased. Withdrawals from private wells are largest in the inland areas of the western part of the State, and the towns of Scituate and Charlestown have the highest estimated withdrawals. Statewide monthly withdrawals ranged from 3.987 million gallons per day in March 2018 to 7.767 million gallons per day in September 2016. The median per capita domestic water use rate was 46.0 gallons per capita per day.

Rhode Island

Flood-inundation maps for the Cuyahoga River at Jaite, Ohio, 2024

Digital flood-inundation maps for a nearly 6-mile reach of the Cuyahoga River at Jaite, Ohio, were created by the U.S. Geological Survey (USGS) in cooperation with the Northeast Ohio Regional Sewer District Board of Trustees. The maps depict estimates of the extent and depth of flooding corresponding to selected water levels (stages) at USGS streamgage 04206425 on the Cuyahoga River at Jaite, Ohio. Water-surface profiles were computed for the stream reach by using a one-dimensional steady-state step-backwater model. The hydraulic model was calibrated to the current USGS streamgage data and then used to compute 15 water-surface profiles for flood stages at 1-foot intervals referenced to the streamgage datum and ranging from 6 to 20 feet, which correspond to below “action stage” to “major flood stage” as reported by the National Weather Service. The simulated water-surface profiles were then used with a geographic information system digital elevation model derived from light detection and ranging data to delineate the areas flooded at each stage. These maps, along with current stage data from the USGS streamgage and forecasted high-flow stages from the National Weather Service, can provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures, as well as for postflood recovery efforts.

Ohio

The 17 January 1994 Northridge, California, earthquake: A retrospective analysis

The 17 January 1994 Northridge, California, earthquake was a watershed event, with far-reaching societal and scientific impacts. The earthquake, which occurred in the early days of both broadband seismic networks and the Internet, spurred advances in seismic monitoring, real-time systems, and development of data products. Motivated by the 30th anniversary of the earthquake, we present a brief retrospective of the earthquake and its impact, and reconsider both ground motions and the aftershock distribution using modern tools and best-available data. With improvements in instrumentation and analysis methodology, recent earthquakes continue to reveal increasing complexity of ground motions, fault systems, and earthquake ruptures. Even in the absence of data from state-of-the art instrumentation, a retrospective consideration of ground motion data from the Northridge earthquake reveals complexities beyond what could be characterized (and modeled) thirty years ago. Aftershock relocations for both the 1971 Sylmar and 1994 Northridge earthquakes also reveal an updated view of fault complexity. Our study does provide a cautionary tale regarding legacy data sets and research results that are not easily accessible, which can result in discrepancies between catalog data and products from best-available science. We also briefly describe outreach products produced as part of the anniversary commemoration.

California

Development of USGS NSHMs: Do small changes in hazard imply small changes in risk?

One of the flagship products from the U.S. Geological Survey (USGS) is the National Seismic Hazard Model (NSHM). Since 1976, the NSHM has been periodically updated to reflect newly published earthquake science and provide probabilistic estimates of seismic hazard for the United States. During each update cycle, alternative models are deliberated, analyzed, and documented through logic trees and their corresponding logic tree branch weights. For example, the decision to modify a logic tree branch weight may be influenced by sensitivity analyses of the logic tree branches in their effects on the mean hazard. However, do small changes in traditional measures of hazard imply small changes in risk? In this study, we make use of two update cycles of the USGS NSHMs and a National Bridge Inventory (NBI) from the Federal Highway Administration (FHWA) to explore the preceding question. Specifically, we first identify geographic locations in the conterminous United States in which the change in hazard from one cycle to another is relatively small. Next, we model the seismic risk to highway bridges for these locations and for each update cycle, while simultaneously distinguishing low hazard environments from high hazard environments. These data enable quantitative analysis of how much changes in risk can be expected given small changes in hazard, investigating the importance of risk models in decision-making during development of the USGS NSHMs.

Conference Paper

Geologic map of the Sierra Nevada, California and western Nevada

THE GEOLOGIC MAP OF THE SIERRA NEVADA is a core component of the Sierra Nevada Earth Science Atlas, which also includes geophysical, neotectonic, economic, and geochronologic data. The map illustrates the distribution of geologic units across the Sierra Nevada and related adjacent areas. Geologic units are grouped by type and age into three categories: Principally Paleozoic and Mesozoic metasedimentary and metavolcanic wall rocks, most of which are grouped into terranes; Paleozoic and Mesozoic plutons and intrusive suites, which intrude the wall rocks and form the core batholith of the range; and Late Cretaceous and Cenozoic sedimentary and volcanic rocks and surficial deposits that unconformably overlap the older units. Related rock units were combined and simplified for presentation at a scale of 1:400,000, as shown in the list of map units and associated correlation of map units (Plate 1B) and description of map units (Appendix A). Tectonic faulting, folding and uplift have overprinted the rocks and have strongly influenced the spatial distribution of units and the distinct morphology of the Sierra Nevada as we see it today. The Atlas is the result of collaborative work by scientists and mapmakers from the California Geological Survey and the U.S. Geological Survey. The Atlas was originally envisioned by the late geologist Warren Nokleberg (1939-2021), who contributed much to the initial geologic map compilation

California, Nevada

Groundwater tracing used to delineate recharge areas and map karst groundwater pathways for subterranean streams at Oregon Caves National Monument and Preserve

Oregon Caves National Monument and Preserve in southwestern Oregon is a 4,554-​acre area managed by the National Park Service that is home to several cave systems, including Oregon Caves, which is the longest cave in Oregon, with 3.03 miles of mapped passages. Because of the interconnected nature of karst hydrologic systems, it is critical to understand the areas that can influence water quality and quantity in karst environments. Toward this goal, dye tracing was conducted by the U.S. Geological Survey from 2021 to 2024 to better understand the pathways that karst groundwater follows at Oregon Caves National Monument and Preserve and to delineate recharge areas for two caves, Oregon Caves and Cave Next Door. During the project, eight dye injections were conducted, delineating a 0.51-​square-​mile recharge area for Oregon Caves and a 0.69-​square-​mile recharge area for Cave Next Door. Additionally, the study helped to identify three resurgences associated with Oregon Caves that were previously unknown and showed that the recharge areas for the two caves were distinct from one another. The dye traces also illuminated some unique recharge characteristics of the karst at Oregon Caves, including a high variance in karst groundwater velocities, retention within the karst aquifers, and a significant diffuse-​flow component.

Oregon

3D semantic mapping of surface geological features

Semantic mapping in 3D is fundamental to a wide range of geoscientific studies and applications, including geomorphology, hazard assessment, and environmental monitoring. However, automatically segmenting geological features from large-scale photogrammetric datasets remains a significant challenge. We present a methodology to address this gap. Using overlapping images collected over environments of interest, Structure-from-Motion (SfM) produces georeferenced point clouds and estimates camera poses. Existing large vision models, such as Segment Anything Model, segment objects in the images, generating pixel-segmentation associations. To produce pixel-point associations, we project the points back onto the camera image planes. As objects are independently segmented across multiple images with different perspectives, we develop a segmentation mosaicking algorithm to build probabilistic point-segmentation associations that combines the pixel-segmentation associations and pixel-point associations. Our methodology is validated using both synthetic data generated by Kubric and real-world UAV-SfM data. The implementation is designed to be compatible with existing SfM software, including Agisoft and OpenDroneMap, for photogrammetry mapping in geoscience studies. As a case study, we apply our method to the semantic mapping of precariously balanced rocks (PBRs), which provide upper-bound constraints on historical ground motion shaking intensity. To support object-level identification of PBRs, we additionally integrated Grounding DINO, enabling text-prompted segmentation of features of interest within UAV imagery. This case study demonstrates the effectiveness of our method in generating a 3D semantic map of PBRs, enabling spatial distribution of PBR fragility for earthquake hazard analysis.

Computers & Geosciences

Non-radiometric borehole geophysical detection of geochemical halos surrounding sedimentary uranium deposits

Roll-type uranium deposits are formed by the concentration of uranium by ground water in geochemical cells. Non-uranium minerals having different solubilities may be deposited ahead of or behind the uranium minerals, forming halos that surround the ore. In addition, oxidizing and reducing environmental conditions may cause zones of mineral alteration to develop beyond the limits of the uranium deposit. Certain physical property anomalies that are commonly associated with halos can be detected by relatively fast and inexpensive borehole geophysical measurements made either in individual holes, or between two adjacent holes. Borehole measurements that have been found to be useful include electrical resistivity, induced polarization, and magnetic susceptibility. Electrical resistivity is increased by the presence of calcite and other cementing minerals that sometimes create permeability barriers in the neighborhood of uranium deposits. Induced polarization (IP) response is increased by sulfide and clay minerals that are commonly found in anomalous concentrations near roll-type deposits. Magnetic susceptibility is usually decreased by the oxidation of magnetite to hematite or limonite in the zone of chemical alteration that is left as a trail behind roll fronts. Borehole measurements of electrical resistivity, induced polarization and magnetic susceptibility were made in the vicinity of a uranium roll-type deposit in south Texas. Results indicate that mineral halos can be detected by borehole measurements made. in wide-spaced drill holes, and that the total amount of drilling needed to find a deposit can be reduced substantially by this exploration approach.

Open-File Report

Assessing natural recharge in Indian Wells Valley, California: A Basin Characterization Model case study

The communities in Indian Wells Valley (IWV), in the northern Mojave Desert in California, rely on groundwater for domestic and agricultural use. Mountain front recharge from the surrounding Sierra Nevada is the main source of natural recharge to the valley. Increased urbanization, agricultural development, and groundwater pumping during recent decades put IWV in a state of critical overdraft. The U.S. Geological Survey Basin Characterization Model, version 8 (BCMv8) was used to evaluate historical and future climate and hydrologic conditions in IWV. The BCMv8 estimated natural recharge in IWV at 10.7 million cubic meters (Mm 3 ) per year for the period from 1981 to 2010. Future patterns of water balance variables using three future climate scenarios, hot-wet, hot-dry, and warm-moderately wet, were calculated for mid-century (2040–69) and end-of-century (2070–99) periods. Results for both wet models projected an increase in recharge in both periods, whereas the hot-dry model projected a decrease in recharge in both periods. All models reported a large increase in seasonal variability in recharge, indicating more future availability and frequent occurrences of drought years. All climate scenarios projected an increase in climatic water deficit in both periods. These increases in irrigation demand and variability of water supply highlight the importance of strategic management planning for the sustainability of water resources in IWV.

California

Over, under, and through: Hydrologic connectivity and the future of coastal landscape salinization

Seawater intrusion (SWI) affects coastal landscapes worldwide. Here we describe the hydrologic pathways through which SWI occurs - over land via storm surge or tidal flooding, under land via groundwater transport, and through watersheds via natural and artificial surface water channels—and how human modifications to those pathways alter patterns of SWI. We present an approach to advance understanding of spatiotemporal patterns of salinization that integrates these hydrologic pathways, their interactions, and how humans modify them. We use examples across the East Coast of the United States that exemplify mechanisms of salinization that have been reported around the planet to illustrate how hydrologic connectivity and human modifications alter patterns of SWI. Finally, we suggest a path for advancing SWI science that includes (a) deploying standardized and well-distributed sensor networks at local to global scales that intentionally track SWI fronts, (b) employing remote sensing and geospatial imaging techniques targeted at integrating above and belowground patterns of SWI, and (c) continuing to develop data analysis and model-data fusion techniques to measure the extent, understand the effects, and predict the future of coastal salinization.

Water Resources Research

Factors influencing landslide occurrence in low-relief formerly glaciated landscapes: Landslide inventory and susceptibility analysis in Minnesota, USA

In landscapes recently impacted by continental glaciation, landslides may occur where topographic relief has been generated by the drainage of glacial lakes and ensuing post-glacial fluvial network development into unconsolidated glacially derived sediments and exhumed bedrock. To investigate linkages among environmental variables, post-glacial landscape development, and landslides, we created a landslide inventory of nearly 10,000 landslides in five regions of the formerly glaciated low-relief state of Minnesota, USA. Multivariate logistic regression indicates the importance of slope angle, lithology, and the development of stream valleys to landslide distribution. Areas underlain by fine-grained glaciolacustrine and nearshore deposits that are incised by streams are particularly prone to shallow (<1-2 m depth) landslides. Landslides also occur in a wide range of glacial and fluvial deposits, and as rockfall in layered Paleozoic sedimentary rocks in central and southern Minnesota and Precambrian igneous and sedimentary rocks in northeastern Minnesota. Although no more than 1-2% of the studied regions are susceptible to landslides, they can pose risk to life and safety, damage infrastructure, and impact water quality. The combination of recently generated low-relief steep slopes, extensive unconsolidated sediments, and layered sedimentary bedrock make this formerly glaciated landscape more susceptible to landslides than current national-scale models indicate.

Minnesota

Speleothem evidence for Late Miocene extreme Arctic amplification – An analogue for near-future anthropogenic climate change?

The Miocene provides an excellent climatic analogue for near-future runaway anthropogenic warming, with atmospheric CO 2 concentrations and global average temperatures similar to those projected for the coming century under extreme-emissions scenarios. However, the magnitude of Miocene Arctic warming remains unclear due to the scarcity of reliable proxy data. Here we use stable oxygen isotope and trace element analyses, alongside clumped isotope and fluid inclusion palaeothermometry of speleothems to reconstruct palaeo-environmental conditions near the Siberian Arctic coast during the Tortonian (8.68 ± 0.09 Ma ). Stable oxygen isotope records suggest warmer-than-present temperatures. This is supported by temperature estimates based on clumped isotopes and fluid inclusions giving mean annual air temperatures between + 6.6 and + 11.1 °C , compared with − 12.3 °C today. Trace elements records reveal a highly seasonal hydrological environment. Our estimate of > 18 °C of Arctic warming supports the wider consensus of a warmer-than-present Miocene and provides a rare palaeo-analogue for future Arctic amplification under high-emissions scenarios. The reconstructed increase in mean surface temperature far exceeds temperatures projected in fully coupled global climate models, even under extreme-emissions scenarios. Given that climate models have consistently underestimated the extent of recent Arctic amplification, our proxy data suggest Arctic warming may exceed current projections.

Lena River delta

Escherichia coli monitoring and assessment in 2022 and 2023 after beach restoration at Lake St. Clair Metropark Beach, Macomb County, Michigan

Lake St. Clair Metropark Beach in Michigan has a history of closures because of elevated Escherichia coli ( E. coli ) concentrations in its recreational waters. To reduce closures, restoration projects were implemented in 2021 to deter waterfowl from congregating on the beach. In this study, the U.S. Geological Survey, in cooperation with the Michigan Department of the Environment, Great Lakes, and Energy and in collaboration with Huron-Clinton Metroparks and the Macomb County Health Department, monitored E. coli from 2022–23 in surface water, shallow groundwater, and sediment at Lake St. Clair Metropark Beach. Results were compared to data from a prerestoration (2018–19) study. A significant decrease in daily geometric mean E. coli concentrations in surface water was observed postrestoration, but the number of high concentration events increased. This resulted in more frequent beach closures postrestoration. Surface-sediment E. coli concentrations significantly decreased after restoration, and waterfowl populations generally decreased from 2021 to 2023, suggesting that the deterrence measures could be influencing E. coli concentrations in surface sediments and surface water. Groundwater E. coli concentrations were orders of magnitude higher than those in surface water and revealed no change correlated with restoration. Seepage measurements indicated that groundwater occasionally discharges into surface water, potentially providing a transport mechanism for E. coli to reach the lake. Continued monitoring and consideration of environmental factors could help to better understand the beach system.

Michigan