USGS Science⌕ Search

SEARCH · USGS Science

Results for “Biology Direct”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 469 records · Page 26Linked to original sources

Atmospheric propagation modeling indicates homing pigeons use loft-specific infrasonic ‘map’ cues

Results from an acoustic ray-tracing program using daily meteorological profiles are presented to explain ‘release-site biases’ for homing pigeons at three experimental sites in upstate New York where W. T. Keeton and his co-workers at Cornell University conducted extensive releases between 1968 and 1987 in their investigations of the avian navigational ‘map’. The sites are the Jersey Hill and Castor Hill fire towers, and another near Weedsport, where control pigeons from the Cornell loft vanished in random directions, in directions consistently >50 deg clockwise and in directions ∼15 deg clockwise from the homeward bearing, respectively. Because Cornell pigeons were disoriented at Jersey Hill whereas birds from other lofts were not, it is inferred that Jersey Hill lies within an acoustic ‘shadow’ zone relative to infrasonic signals originating from the Cornell loft’s vicinity. Such signals could arise from ground-to-air coupling of near-continuous microseisms, or from scattering of direct microbaroms off terrain features, both of which are initially generated by wave–wave interactions in the deep ocean. HARPA runs show that little or no infrasound from the loft area arrived at Jersey Hill on days when Cornell pigeons were disoriented there, and that homeward infrasonic signals could have arrived at all three sites from directions consistent with pigeon departure bearings, especially on days when these bearings were unusual. The general stability of release-site biases might be due to influences of terrain on transmission of the homeward signals under prevailing weather patterns, whereas short-term changes in biases might be caused by rapid shifts in atmospheric conditions.

New York↗

Changing storm conditions in response to projected 21st century climate change and the potential impact on an arctic barrier island–lagoon system—A pilot study for Arey Island and Lagoon, eastern Arctic Alaska

Executive Summary Arey Lagoon, located in eastern Arctic Alaska, supports a highly productive ecosystem, where soft substrate and coastal wet sedge fringing the shores are feeding grounds and nurseries for a variety of marine fish and waterfowl. The lagoon is partially protected from the direct onslaught of Arctic Ocean waves by a barrier island chain (Arey Island) which in itself provides important habitat for migratory shorebirds and waterfowl. In this work, numerically modeled waves and water levels are computed under the provision of sea-level rise and changing conditions brought about by 21st century climate variability. Model results, supported by observations, are used to assess the stability of the barrier chain and spatiotemporal changes in flood patterns across fringing coastal wet sedge areas. The results aim to support studies that investigate the possibility of new biological succession trajectories and loss or increase of habitat areas.

Alaska↗

U.S. Geological Survey 21st-Century science strategy 2020–2030

Today’s Earth system challenges are far more complex and urgent than those that existed in 1879 when the USGS was established. Society’s greatest challenges are directly or indirectly linked to major areas of USGS science. Increased pressures on natural resources continue with consequences for national security, food and water availability, natural disasters, human health, and biodiversity loss. As we look forward 10, 20, and 30 years, our mission will be more important than ever before. A broad but coherent view is required for stewardship of the Nation’s land, water, mineral, energy, and ecosystem resources, which involves complex tradeoffs among multiple, often competing objectives. Increasingly, resource managers and decision makers need “the whole USGS”: integrated multidisciplinary Earth and biological science data, geospatial tools, predictive models, decision-support tools, and the expertise to interpret them. This Science Strategy defines a vision and mission for how we will continue to evolve USGS Science to address these Earth system challenges.

Circular↗

Spatial and temporal variations in oceanographic and meteorologic forcing along the central California coast, 1980-2002

Since the 1980s, our understanding of such important large-scale phenomena as El Ni?o events and the California Current System that drive physical, chemical, and biologic processes along the U.S. west coast has greatly improved. However, our ability to predict the influence of annual and interannual events on a regional scale still remains limited. We have analyzed high-resolution hourly data from eight National Oceanic and Atmospheric Administration buoys deployed since the early 1980s off central California to study spatial and temporal variations in oceanographic and meteorologic forcing along the coast. We identified seasonal to interannual trends in significant wave height, dominant wave period, sea-level barometric pressure, sea-surface water temperature, windspeed, and wind direction were identified, as well as significant departures in these trends during El Ni?o and La Ni?a periods. The results suggest increasing wave heights and wave periods, decreasing sea-level barometric pressures and variations in sea-surface water temperatures, and increasing variations in windspeed and wind direction off central California between 1980 and 2002.

Scientific Investigations Report↗

Hydrological, geological, and biological site characterization of breccia pipe uranium deposits in Northern Arizona

On July 21, 2009, U.S. Secretary of the Interior Ken Salazar proposed a two-year withdrawal of about 1 million acres of Federal land near the Grand Canyon from future mineral entry. These lands are contained in three parcels: two parcels on U.S. Bureau of Land Management land to the north of the Grand Canyon (North and East Segregation Areas) and one on the Kaibab National Forest south of the Grand Canyon (South Segregation Area). The purpose of the two-year withdrawal is to examine the potential effects of restricting these areas from new mine development for the next 20 years. This proposed withdrawal initiated a period of study during which the effects of the withdrawal must be evaluated. At the direction of the Secretary, the U.S. Geological Survey began a series of short-term studies designed to develop additional information about the possible effects of uranium mining on the natural resources of the region. Dissolved uranium and other major, minor, and trace elements occur naturally in groundwater as the result of precipitation infiltrating from the surface to water-bearing zones and, presumably, to underlying regional aquifers. Discharges from these aquifers occur as seeps and springs throughout the region and provide valuable habitat and water sources for plants and animals. Uranium mining within the watershed may increase the amount of radioactive materials and heavy metals in the surface water and groundwater flowing into Grand Canyon National Park and the Colorado River, and deep mining activities may increase mobilization of uranium through the rock strata into the aquifers. In addition, waste rock and ore from mined areas may be transported away from the mines by wind and runoff.

Scientific Investigations Report↗

Effects of landfill leaching on water quality and biology of a nearby stream, South Cairo, Greene County, New York

A 1-kilometer stream reach receiving leachate-enriched water from a small municipal landfill in Greene County, N.Y., was studied from 1971-75 to document streamflow rates and chemical quality of the stream and ground water. The distribution of benthic invertebrates and microorganisms in the stream above the landfill was markedly different from that below it; the difference is attributed to the inflow of leachate. The Trichoptera, Ephemeroptera, and Nematomorpha have been eliminated from the reach adjacent to and below the landfill and have been replaced by large numbers of Tendipedidae and Niadidae. Certain chemical constituents, especially iron and manganese, were extremely concentrated in the ground water immediately beneath the streambed. The elevated concentrations of these and other metals may be the direct cause of the abrupt faunal shift. Algae were replaced by large masses of the iron bacterium Leptothrix in the stream reach below the landfill. (Kosco-USGS)

Water-Resources Investigations Report↗

Geological considerations in hazardous waste disposal

Present regulations assume that long-term isolation of hazardous wastes - including toxic chemical, biological, radioactive, flammable and explosive wastes - may be effected by disposal in landfills that have liners of very low hydraulic conductivity. In reality, total isolation of wastes in humid areas is not possible; some migration of leachate from wastes buried in the gound will always occur. Regulations should provide performance standards applicable on a site-by-site basis rather than rigid criteria for site selection and design. The performance standards should take into account several factors: (1) the categories, segregation, degradation and toxicity of the wastes; (2) the site hydrogeology, which governs the direction and rate of contaminant transport; (3) the attenuation of contaminants by geochemical interactions with geologic materials; and (4) the release rate of unattenuated pollutants to surface or groundwater. An adequate monitoring system is essential. The system should both test the extent to which the operation of the site meets performance standards and provide sufficient warning of pollution problems to allow implementation of remedial measures. In recent years there has been a trend away from numerous, small disposal sites toward fewer and larger sites. The size of a disposal site should be based on the attenuation capacity of the geologic material, which has a finite, though generally not well-defined, limit. For slowly degradable wastes, engineered sites with leachate-collection systems appear to be only a temporary solution since the leachate collected will also require final disposal.

Journal of Hydrology↗

Using GPS tracking data to validate the conservation value of bird migration counts

Effective conservation of migratory birds requires gathering of information about their population trends, often acquired using migratory bird counts. These schemes ideally operate at migratory bottlenecks, through which a significant portion of the counted migratory populations is funneled. Yet it is rare to validate the conservation value of the data from these counts. Here we perform this validation using GPS tracking data collected from two migratory species during their movement over two count schemes: the globally endangered steppe eagle counted in Eilat, Israel, and the black kite, counted in Batumi, Georgia. We use tracking data to answer two questions: which populations are counted and what affects the probability that a given individual will be counted. Our results illustrate variability in the effectiveness of these two migratory bird counting schemes. Considering the goal of estimating population trends, we show that Eilat does not represent a good location for understanding population trends of steppe eagles, while Batumi appears to provide better information on demographic trends of black kites. We further present differences in annual and individual variability, evidence regarding the breeding area origins of the counted populations and effects of environmental factors on the raptors' routes and, consequently, on the probabilities of being counted. Beyond the direct implications of our results, this study provides an example of using telemetry data to parameterize inference from bird counts. Further coupling of migratory bird count data and GPS data can improve our understanding of migration ecology and the conservation of migratory species.

Biological Conservation↗

A hierarchical modelling framework for estimating individual- and population-level reproductive success from movement data

Rapidly advancing animal telemetry technologies paired with new statistical models can provide insight into the behaviour of otherwise unobservable free-living animals. Changes in behaviour apparent from pairing telemetry with statistical models often occur as animals undertake key life-history activities, such as reproduction. For many species that are secretive or occupy remote areas, these life-history events are difficult to detect with conventional survey techniques, and consequently, vital rates are difficult to estimate. We present a hierarchical modelling framework, which integrates movement data observed via animal-borne telemetry and optional, infrequent survey data, to estimate individual- and population-level reproductive success. The approach combines a mechanistic movement model and survival model, and allows for assessing the effects of hypothesized individual and environmental covariates on reproductive success. We first tested our approach with simulated data, and then applied it to movement data from migratory golden eagles ( Aquila chrysaetos) breeding in southcentral Alaska across four breeding seasons. We show that results supported our biological hypotheses that changes in movement coincided with the timing of reproductive failures, and that changes in movement could be used to assess breeding success (and failure) at the individual and population levels. The analysis also provided evidence of inter-annual variation in population-level nest success and the timing of nesting failures. This new approach is adaptable to many species that care for young and can be tracked with telemetry devices, and can provide not only individual-level information useful for testing ecological hypotheses, but estimates of demographic parameters that can directly inform conservation and management if tagged animals are representative of the population.

Methods in Ecology and Evolution↗

Long-term changes of the Lake Michigan fish community following the reduction of exotic alewife ( Alosa pseudoharengus )

We used our long-term annual bottom trawl survey (1973–2004) in Lake Michigan to reveal the response of the native fish community to the biological control of a dominant exotic fish, alewife ( Alosa pseudoharengus ), as well as to changes in total phosphorus and salmonine biomass. Through nonmetric multidimensional scaling, we documented a 1970s community largely dominated by alewife, and then a shift to a community dominated by several native species during the 1980s through 1990s, when alewife remained at relatively low levels. We argue that the recovery of burbot ( Lota lota ), deepwater sculpin ( Myoxocephalus thompsonii ), and yellow perch ( Perca flavescens ) was partially or fully aided by the alewife reduction. We argue that changes in phosphorus or salmonines were not directly related to abundance increases of native species. An additional community shift occurred during 1999–2004, which coincided with a reduction in species richness and total fish biomass in our trawl. The mechanisms underlying this latest shift may be related to reductions in nutrients, but further research is required. The restoration of the native fish community has been incomplete, however, as emerald shiner ( Notropis atherinioides ), cisco ( Coregonus artedii ), and lake trout ( Salvelinus namaycush ) have yet to demonstrate recovery.

Canadian Journal of Fisheries and Aquatic Sciences↗

Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay

Many marine organisms have a well-known adult sessile stage. Unfortunately, our lack of knowledge regarding their larval transient stage hinders our understanding of their basic ecology and connectivity. Larvae can have swimming behavior that influences their transport within the marine environment. Understanding the larval stage provides insight into population connectivity that can help strategically identify areas for restoration. Current techniques for understanding the larval stage include modeling that combines particle attributes (e.g., larval behavior) with physical processes of water movement to contribute to our understanding of connectivity trends. This study builds on those methods by using a previously developed retention clock matrix (RCM) to illustrate time dependent connectivity of two species of shellfish between areas and over a range of larval durations. The RCM was previously used on physical parameters but we expand the concept by applying it to biology. A new metric, difference RCM (DRCM), is introduced to quantify changes in connectivity under different scenarios. Broad spatial trends were similar for all behavior types with a general south to north progression of particles. The DRCMs illustrate differences between neutral particles and those with behavior in northern regions where stratification was higher, indicating that larval behavior influenced transport. Based on these findings, particle behavior led to small differences (north to south movement) in transport patterns in areas with higher salinity gradients (the northern part of the system) compared to neutral particles. Overall, the dominant direction for particle movement was from south to north, which at times was enhanced by winds from the south. Clam and oyster restoration in the southern portion of Barnegat Bay could serve as a larval supply for populations in the north. These model results show that coupled hydrodynamic and particle tracking models have implications for fisheries management and restoration activities.

New Jersey↗

Conservation of North American rallids

The Rallidae are a diverse group in their habitat selection, yet most North American species occur in or near wetlands As a consequence, most species are subject to habitat enhancement or perturbation from waterfowl management programs. The overall effects of these management programs relative to rallid conservation have been assessed for few species, and there is a need for synthesis of such information. In the cases of some species or raves, population status is not known, and suggested directions for conservation and management are needed. Rare, endangered, or status undetermined species or races often occur in areas where related species are classified as game birds, and the effects of such hunting on rarer forms are not known. Their generally secretive nature, the endangered status of several races and populations, and continued loss of habitat and threats to present habitat, warrant an examination of the conservation status of the North American taxa in this group. In 1977, a committee of the International Association of Fish and Wildlife Agencies summarized available information on management and biology of American Coots ( Fulica americana ), rails, and gallinules in North America (Holliman 1977). That summary was intended to provide relatively complete information on conservation of these species, and also to provide guidance for research within the U.S. Fish and Wildlife Service's (FWS) Accelerated Research Program for Webless Migratory Shore and Upland Game Birds (ARP). Subsequently, a number of rallid studies were funded under this program. The program was eliminated in 1982, following substantial research activities on North American rallids. Since the demise of the ARP, additional research on rallids in North America has focused on an area the International Association of Fish and Wildlife Agencies report failed to cover in detail--that of endangered rallids in the U.S. and their possessions. Most of these studies have been of threatened and endangered taxa in western coastal marshes. This report updates and summarizes information on North American rallids since the ARP report and identifies the major conservation problems of this group with the intent of focusing future efforts on these priority issues. Consideration of island forms occurring within U.S. possessions is beyond the scope of this report, mainly because of the special conservation problems associated with their insular distribution. The major topics include habitat requirements, effects of habitat and hunting management techniques currently practiced on wetland areas, and conservation of endangered and threatened populations. Research needs are identified. Habitats of the American Coot are similar to those of several waterfowl species, and the biology of coots is considered only as it is typical of rails in general.

The Wilson Bulletin↗

Estimating population persistence for at-risk species using citizen science data

Population persistence probability is valuable for characterizing risk to species and informing listing and conservation decisions but is challenging to estimate through traditional methods for rare, data-limited species. Modeling approaches have used citizen science data to mitigate data limitations of focal species and better estimate parameters such as occupancy and detection, but their use to estimate persistence and inform conservation decisions is limited. We developed an approach to estimate persistence using only occurrence records of the target species and citizen science occurrence data of non-target species to account for search effort and imperfect detection. We applied the approach to a highly cryptic and data-limited species, the southern hognose snake ( Heterodon simus ), as part of its USFWS Species Status Assessment, and estimated current (in 2018) and future persistence under plausible scenarios of varying levels of urbanization, sea level rise, and management. Of 222 known populations, 133 (60%) are likely extirpated currently (persistence probability < 50%), and 165 (74%) populations are likely to be extirpated by 2080 with no additional management. Future management scenarios that included strategies to acquire and improve habitat on currently unprotected lands with existing populations lessened the estimated rate of population declines. These results can directly inform listing decisions and conservation planning for the southern hognose snake by Federal, State, and other partners. Our approach – using occurrence records and auxiliary data from non-target species to estimate population persistence – is applicable across rare and at-risk species for evaluating extinction risk with limited data and prioritizing management actions.

Biological Conservation↗

Do rivermouths alter nutrient and seston delivery to the nearshore?

Tributary inputs to lakes and seas are often measured at riverine gages, upstream of lentic influence. Between these riverine gages and the nearshore zones of large waterbodies lie rivermouths, which may retain, transform and contribute materials to the nearshore zone. However, the magnitude and timing of these rivermouth effects have rarely been measured. During the summer of 2011, 23 tributary systems of the Laurentian Great Lakes were sampled from river to nearshore for dissolved and particulate carbon (C), nitrogen (N) and phosphorus (P) concentrations, as well as bulk seston and chlorophyll a concentrations. Three locations per system were sampled: in the upstream river, in the nearshore zone and at the outflow from the rivermouth to the lake. Using stable oxygen isotopes, a water-mixing model was developed to estimate the nutrient concentration that would occur at the rivermouth if mixing was strictly conservative (i.e. if no processing occurred within the rivermouth). Deviations between these conservative mixing estimates and measured nutrient concentrations were identified as rivermouth effects on nutrient concentrations. Rivermouths had higher concentration of C and P than nearshore areas and more chlorophyll a than upstream river waters. Compared to the conservative mixing model, rivermouths as a class appeared to be summer-time sources of N, P and chlorophyll a . Substantial among rivermouth variation occurred both in the effect size and direction for all constituents. Using principal component analysis, two groups of rivermouths were identified: rivermouths that had a large effect on most constituents and those that had very little effect on any of the measured constituents. ‘High-effect’ rivermouths had more abundant upstream croplands, which were presumably the sources of inorganic nutrients. Cross-validated models built using characteristics of the rivermouth were not good predictors of variation in rivermouth effects on most constituents. For consumers feeding on seston and microbes and vascular autotrophs directly taking up dissolved nutrients, rivermouths are more resource-rich than upstream riverine or nearby Great Lakes waters. Given declines over time in open-lake productivity within the Great Lakes, rivermouths may contribute more productivity than their size would suggest to the Great Lakes food web.

Freshwater Biology↗

Dispersal of hatchling Ouachita map turtles (Graptemys ouachitensis) from natural nests on the lower Wisconsin River, Wisconsin, USA

Despite its importance to individual fitness and population dynamics, the dispersal behaviors of most neonate freshwater turtles after nest emergence are poorly known. We studied the initial dispersal tendencies of neonate Ouachita map turtles ( Graptemys ouachitensis ) exiting natural nests during 2015–2017 along the Wisconsin River, Wisconsin. Overall, dispersal was nonrandom, and hatchlings largely oriented toward the nearest substantial vegetative cover, a woodland north of the nesting area. However, variation sometimes occurred in routes taken among hatchlings within a clutch. Directional changes within an individual's dispersal track, including route reversals, were also observed. As our work appears to be the first to use standalone trail cameras as a primary data-gathering tool for a hatchling dispersal study, it highlights the potential benefits and limitations of this technique for similar research.

Wisconsin↗

IPANE: Could New England's Early Detection Network benefit eastern Canada?

The Invasive Plant Analysis of New England (IPANE: ipane.org) is a multifaceted approach to regional early detection of invasive plants. IPANE, was founded in 2001 to create a comprehensive six state New England regional partnership to: minimize the ecological damage caused by invasive plants; provide reliable and accessible educational material; maintain a network of professional and trained volunteers to gather information and to locate new incursions; provide a web-accessible database and maps of invasive and potentially invasive plants; conduct and encourage research on the biology and ecology of invasive plants; and, use program-generated data to develop predictive distribution models for the region. This program uses the synergy of all the components to create a regional early detection and rapid assessment network to curtail new invasions before they become widespread on the regional landscape. IPANE is a model for the United States Geological Survey National Early Detection Network Toolbox, a compendium of information developed for use by Network partners. In addition, an Early Detection Alert system has been developed to inform key federal and state agency staff, conservation organizations, and those with vegetation management responsibilities about new or potential invaders to the region. These include current and anticipated distribution, diagnostic characters, images, pertinent biological and control information, and key contacts. Most of the non-native species currently considered invasive by IPANE appear to be spreading into New England from the south or west. IPANE is strategically placed to act as an advanced warning system for the 5 provinces of Eastern and Maritime Canada. At the meeting held in Nova Scotia in September 2007, this idea was suggested to attendees from 4 of these 5 provinces and the Canadian government. By expanding its alert systems, IPANE could serve as a focal point for Early Detection information moving in any direction and tie Eastern Canada into the National Early Detection Network of the United States.

Conference Paper↗

Mass spectrometric analysis of organic compounds, water and volatile constituents in the atmosphere and surface of Mars: The Viking Mars Lander

An experiment centering around a mass spectrometer is described, which is aimed at the identification of organic substances present in the top 10 cm of the surface of Mars and an analysis of the atmosphere for major and minor constituents as well as isotopic abundances. In addition, an indication of the abundance of water in the surface and some information concerning the mineralogy can be obtained by monitoring the gases produced upon heating the soil sample. The organic material will simply be expelled by heating to 150°, 300°, and 500° into the carrier gas stream of a gas chromatograph interfaced to the mass spectrometer or by slowly heating the sample in direct communication with the spectrometer. It is planned to analyze a total of up to nine soil samples in order to study diurnal and seasonal variations. The system is designed to give useful data even for minor constituents if the total of organics should be as low as 5ppm. The spectrometer covers the mass range of 12–200 with adequate resolution. The results of these experiments, which are deliberately designed to cover a wide spectrum of possibilities independent of terrestrial models, are expected to produce a good picture of the planet's organic chemistry and its possible biological significance as well as allow conclusions regarding the history of the planet's atmosphere.

Icarus↗

Comparative toxicity of two neonicotinoid insecticides at environmentally relevant concentrations to telecoprid dung beetles

Dung beetles (Coleoptera: Scarabaeinae) frequently traverse agricultural matrices in search of ephemeral dung resources and spend extended periods of time burrowing in soil. Neonicotinoids are among the most heavily applied and widely detected insecticides used in conventional agriculture with formulated products designed for row crop and livestock pest suppression. Here, we determined the comparative toxicity of two neonicotinoids (imidacloprid and thiamethoxam) on dung beetles, Canthon spp. , under two exposure profiles: direct topical application (acute) and sustained contact with treated-soil (chronic). Imidacloprid was significantly more toxic than thiamethoxam under each exposure scenario. Topical application LD50 values (95% CI) for imidacloprid and thiamethoxam were 19.1 (14.5–25.3) and 378.9 (200.3–716.5) ng/beetle, respectively. After the 10-day soil exposure, the measured percent mortality in the 3 and 9 µg/kg nominal imidacloprid treatments was 35 ± 7% and 39 ± 6%, respectively. Observed mortality in the 9 µg/kg imidacloprid treatment was significantly greater than the control ( p = 0.04); however, the 3 µg/kg imidacloprid dose response may be biologically relevant ( p = 0.07). Thiamethoxam treatments had similar mortality as the controls ( p > 0.8). Environmentally relevant concentrations of imidacloprid measured in airborne particulate matter and non-target soils pose a potential risk to coprophagous scarabs.

Scientific Reports↗