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At least 469 records · Page 26Linked to original sources

Habitat use by breeding waterbirds in relation to tidal marsh restoration in the San Francisco Bay estuary

The South Bay Salt Pond Restoration Project aims to restore many former salt production ponds, now managed for wildlife and water quality, to tidal marsh. However, because managed ponds support large densities of breeding waterbirds, reduction of pond habitat may influence breeding waterbird distribution and abundance. We investigated habitat use associated with breeding, feeding, and roosting behaviors during the breeding season for American Avocets ( Recurvirostra americana ), Black-necked Stilts ( Himantopus mexicanus ), Forster’s Terns ( Sterna forsteri ), and Caspian Terns ( Hydroprogne caspia ) in south San Francisco Bay in 2019 after substantial tidal marsh restoration, and compared results to a 2001 survey (before restoration). In 2019, managed ponds (26% of currently available habitat) were selected by waterbirds engaged in breeding behaviors (> 39% of observations), foraging (> 42%), and roosting (> 73%). Waterbirds avoided tidal habitats (43% of available habitat), comprising < 17% of observations of breeding behavior, < 28% of foraging observations, and < 13% of roosting observations. Waterbird densities increased in managed ponds between 2001 and 2019, and decreased in active salt ponds, especially among feeding Avocets (92% decrease) and Stilts (100% decrease). Islands were important for waterbirds observed breeding and roosting (45% of Avocet and 53% of Tern observations). Avocets and Stilts fed primarily on wet bare ground (65% and 58%, respectively), whereas feeding Forster’s Terns and Caspian Terns used mostly open water (82% and 93%, respectively). Within ponds, Avocets were associated with islands (131 m closer than expected). Stilts and Forster’s Terns were also associated with islands (68 m and 161 m closer than expected), except when feeding (1 m closer and 90 m farther than expected). Avocets and Stilts were associated with pond levees (39 m and 41 m closer than expected), but Forster’s Terns were not (9 m closer than expected). Our results emphasize the importance of managed ponds for breeding and foraging waterbirds, including islands for breeding and roosting and levees for foraging.

California↗

Foundational science in flight—USGS bird programs support conservation, culture, and a thriving U.S. economy

Birds are vital to our economy, ecosystems, and cultural heritage. Investing in bird conservation benefits communities, businesses, and working lands while reinforcing our nation’s legacy of stewardship and biodiversity. By valuing birds, we ensure a richer, healthier, and more vibrant future for all Americans. The USGS leads two national bird monitoring programs Thriving bird populations contribute over $ 100 billion in related purchases to the U.S. economy annually, helping to support 1.4 million jobs and $ 90 billion in labor-related income. Across our nation, Federal and State wildlife agencies, Flyway Councils, non-governmental organizations, and more consider data from the U.S. Geological Survey’s (USGS) Bird Banding Laboratory (BBL) and Breeding Bird Survey (BBS) to be critical to meeting their mandates to set healthy harvest levels and in identifying species of conservation need. However, without stable and sufficient resources for the BBL and BBS, the capacity to monitor and address the rapidly evolving needs of migratory bird populations is at risk, jeopardizing the foundation of collaborative conservation efforts across North America.

Fact Sheet↗

U.S. Department of the Interior Climate Science Centers and U.S. Geological Survey National Climate Change and Wildlife Science Center—Annual report for 2017

Introduction The year 2017 was a year of review and renewal for the Department of the Interior (DOI) Climate Science Centers (CSCs) and the U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC). The Southeast, Northwest, Alaska, Southwest, and North Central CSCs’ 5-year summary review reports were released in 2017 and contain the findings of the external review teams led by the Cornell University Human Dimensions Research Unit in conjunction with the American Fisheries Society. The reports for the Pacific Islands, South Central, and Northeast CSCs are planned for release in 2018. The reviews provide an opportunity to evaluate aspects of the cooperative agreement, such as the effectiveness of the CSC in meeting project goals and assessment of the level of scientific contribution and achievement. These reviews serve as a way for the CSCs and NCCWSC to look for ways to recognize and enhance our network’s strengths and identify areas for improvement. The reviews were followed by the CSC recompetition, which led to new hosting agreements at the Northwest, Alaska, and Southeast CSCs. Learn more about the excellent science and activities conducted by the network centers in the 2017 annual report.

Open-File Report↗

Population trajectory of burrowing owls (Athene cunicularia) in eastern Washington

Anecdotal evidence suggests that burrowing owls have declined in Washington. The Washington Department of Fish and Wildlife is currently conducting a status review for burrowing owls which will help determine whether they should be listed as threatened or endangered in the state. To provide insights into the current status of burrowing owls (Athene cunicularia), we analyzed data from the North American Breeding Bird Survey using two analytical approaches to determine their current population trajectory in eastern Washington. We used a one-sample t-test to examine whether trend estimates across all BBS routes in Washington differed from zero. We also used a mixed model analysis to estimate the rate of decline in number of burrowing owls detected between 1968 and 2005. The slope in number of burrowing owls detected was negative for 12 of the 16 BBS routes in Washington that have detected burrowing owls. Numbers of breeding burrowing owls detected in eastern Washington declined at a rate of 1.5% annually. We suggest that all BBS routes that have detected burrowing owls in past years in eastern Washington be surveyed annually and additional surveys conducted to track population trends of burrowing owls at finer spatial scales in eastern Washington. In the meantime, land management and regulatory agencies should ensure that publicly managed areas with breeding burrowing owls are not degraded and should implement education and outreach programs to promote protection of privately owned areas with breeding owls.

Northwest Science↗

Alligator, Alligator mississippiensis, habitat suitability index model

The 2012 Coastal Master Plan utilized Habitat Suitability Indices (HSIs) to evaluate potential project effects on wildlife species. Even though HSIs quantify habitat condition, which may not directly correlate to species abundance, they remain a practical and tractable way to assess changes in habitat quality from various restoration actions. As part of the legislatively mandated five year update to the 2012 plan, the wildlife habitat suitability indices were updated and revised using literature and existing field data where available. The outcome of these efforts resulted in improved, or in some cases entirely new suitability indices. This report describes the development of the habitat suitability indices for the American alligator, Alligator mississippiensis .

Report↗

Multi-species, multi-country analysis reveals North Americans are willing to pay for transborder migratory species conservation

Migratory species often provide ecosystem service benefits to people in one country while receiving habitat support in other countries. The multinational cooperation that could help ensure continued provisioning of these benefits by migration may be informed by understanding the economic values people in different countries place on the benefits they derive from migratory wildlife. We conducted contingent valuation surveys to estimate the willingness of 3733 respondents from Canada, the United States and México to invest in conservation for two disparate migratory species, the northern pintail duck Anas acuta and the Mexican free-tailed bat Tadarida brasiliensis mexicana . With zero-inflated mixed-effects negative binomial regression (explaining 87% of the variation in willingness to pay for conservation), we found that respondents from each nation, after controlling for both household income and per capita national Gross Domestic Product, were willing to invest in conservation in other countries. This willingness to pay for conservation, even when respondents knew that funds would be used to support benefits accruing primarily in other countries, demonstrates the potential for support of multinational conservation policies and programmes that direct resources to locations where the most critical habitat is located, rather than where the funding is generated. These findings could be used to support the development or expansion of new and existing international conservation programmes for migratory species.

People and Nature↗

Marshbird response to herbicide control of cattail in northwestern Minnesota

Wetlands provide essential habitat for a wide variety of wildlife species. In the once wetland-rich Prairie Pothole Region and adjacent areas of central North America, many wetlands have been converted to agricultural production. Many remaining wetlands experience ecological change via the invasion and spread of non-native plant species, such as non-native narrowleaf ( Typha angustifolia ) and hybrid cattail ( Typha x glauca ), which spread aggressively and displace native vegetation, especially in large, impounded wetlands. Management of wetlands in these landscapes often includes broad-scale herbicide application intended to break up mats of cattail and restore areas to more wildlife-friendly conditions. Although restoration of wildlife habitat is a common goal of such management, marshbird response to invasive cattail control is poorly understood. To evaluate the effects of cattail management on wetland wildlife, we conducted standardized call-broadcast surveys for 5 species of marshbirds at 9 study sites that included survey locations associated with areas treated with herbicide and paired areas not treated with herbicide in wetland impoundments in northwestern Minnesota, USA, using a before-after, control-impact study design. We surveyed American bitterns ( Botaurus lentiginosus ), least bitterns ( Ixobrychus exilis ), pied-billed grebes ( Podilymbus podiceps ), soras ( Porzana carolina ), and Virginia rails ( Rallus limicola ) during the breeding season prior to herbicide application (late summer and early autumn of 2015) and during the 3 breeding seasons after herbicide application (2016–2018). We modeled species counts using a generalized linear mixed model with year-by-treatment interactions as fixed effects and site as a random effect. Before herbicide application, expected mean counts did not differ between treatment and control survey locations. Three years post-treatment, we detected significant increases in expected mean counts at treatment compared to control survey locations for soras ( t 193 = −3.373, P = 0.020) and Virginia rails ( t 193 = −3.167, P = 0.037), and point estimates for all species except least bittern were higher at treatment survey locations. Overall, our results suggest that these marshbird species responded positively to herbicide control of invasive cattail and that breeding marshbirds in these and similar wetland systems may experience positive population response over a period of at least 3 years following treatment.

Minnesota↗

Finding the Exotic Faucet Snail (Bithynia tentaculata): Investigation of Waterbird Die-Offs on the Upper Mississippi River National Wildlife and Fish Refuge

Beginning in 2002, there have been major waterbird die-offs every spring and fall in Lake Onalaska (Navigation Pool 7 of the Upper Mississippi River) located near La Crosse, Wisconsin. This area is part of the Upper Mississippi River National Wildlife and Fish Refuge (UMR Refuge) and lies within the Mississippi Flyway, through which an estimated 40 percent of the continent's waterfowl migrate. Through the 2006 spring migration, total mortality on the UMR Refuge was estimated at 22,000 to 26,000 birds, primarily American coots (Fulica americana) and lesser scaup (Aythya affinis). Two trematodes (Sphaeridiotrema globulus and Cyathocotyle bushiensis) that use the exotic faucet snail (Bithynia tentaculata) as an intermediate host were found to infect and kill the waterbirds. The faucet snail was introduced into the United States from Europe in the late 1800s. Because Lake Onalaska is a major spring and fall stop-over area for waterfowl in the Mississippi Flyway, concerns were raised that the snail and trematodes may be spreading to other waterfowl stop-over areas on the river. Exploratory sampling for faucet snails was conducted in 2005 and 2006 in navigation Pools 4-9 (excluding Pool 5a which is located between Pools 5 and 6), 11, and 13. Infected snails were found in all the sampled pools except Pool 6. To our knowledge, these are the first records of faucet snails and associated trematodes beyond those found in Pool 7, Lake Onalaska. Waterbird die-offs are becoming a UMR Refuge-wide problem. Information obtained through research and monitoring, including the identification of the origin of infections in snails and birds and the role various environmental factors have on this process, should help guide managers to develop effective mitigation and control measures.

Open-File Report↗

Keeping the heat on: Weighted surveillance for Chytrid fungus (Batrachochytirum dendrobatidis) in Dixie Valley toads (Anaxyrus [= Bufo] williamsi)

Introduced fungal pathogens have caused declines and extinctions of naïve wildlife populations across vertebrate classes. Consequences of introduced pathogens to hosts with small ranges might be especially severe because of limited redundancy to rescue populations and lower abundance that may limit the resilience of populations to perturbations like disease introduction. As a complement to biosecurity measures to prevent the spread of pathogens, surveillance programs may enable early detection of pathogens, when management actions to limit the effects of pathogens on naïve hosts might be most beneficial. We analyzed surveillance data for the endangered and narrowly endemic Dixie Valley toad ( Anaxyrus [= Bufo ] williamsi ) from two time periods (2011–2014 and 2019–2021) to estimate the minimum detectable prevalence of the amphibian fungal pathogen Batrachochytrium dendrobatidis ( Bd ). We assessed if detection efficiency could be improved by using samples from both Dixie Valley toads and co-occurring introduced American bullfrogs ( Lithobates catesbeianus ) and literature-derived surveillance weights. We further evaluated a weighted surveillance design to increase the efficiency of surveillance efforts for Bd within the toad’s small (<6 km 2 ) range. We found that monitoring adult and larval American bullfrogs would probably detect Bd more efficiently than monitoring Dixie Valley toads alone. Given that no Bd was detected, minimum detectable prevalence of Bd was <3% in 2011–2014, and <5% (Dixie Valley toads only) and <10% (American bullfrogs only) in 2019–2021. Optimal management for Bd depends on the mechanisms underlying its apparent absence from the range of Dixie Valley toads, but a balanced surveillance scheme that includes sampling American bullfrogs to increase the likelihood of detecting Bd , and adult Dixie Valley toads to ensure broad spatial coverage where American bullfrogs do not occur, would probably result in efficient surveillance, which might permit timely management of Bd if it is detected.

Journal of Wildlife Diseases↗

Using mobile acoustic monitoring and false-positive N-mixture models to estimate bat abundance and population trends

Estimating the abundance of unmarked animal populations from acoustic data is challenging due to the inability to identify individuals and the need to adjust for observation biases including detectability (false negatives), species misclassification (false positives), and sampling exposure. Acoustic surveys conducted along mobile transects were designed to avoid counting individuals more than once, where raw counts are commonly treated as an index of abundance. More recently, false-positive abundance models have been developed to estimate abundance while accounting for imperfect detection and misclassification. We adapted these methods to model summertime abundance and trends of three species of bats at multiple spatial scales using acoustic recordings collected along mobile transects by partners of the North American Bat Monitoring Program (NABat) from 2012 to 2020. This multiscale modeling spanned individual transect routes, larger NABat grid cells (10 km × 10 km), and across the entire extent of modeled species ranges. We estimated relationships between species abundances and a suite of abiotic and biotic predictors (landcover types, climatological variables, physiographic diversity, building density, and the impacts of white-nose syndrome [WNS]) and found varying levels of support between species. We present clear evidence of substantial declines in populations of tricolored bats ( Perimyotis subflavus ) and little brown bats ( Myotis lucifugus ), declines that corresponded in space and time with the progression of WNS, a devastating disease of hibernating bats. In contrast, our analysis revealed that similar population-wide declines probably have not occurred in big brown bats ( Eptesicus fuscus ), a species known to be less affected by WNS. This study provides the first abundance-based species distribution predictions and population trends for bats in their summer ranges in North America. These models will probably be applicable to assessing wildlife populations in other monitoring programs where acoustic data are used or where false-negative and false-positive detections are present. Finally, our abundance framework (as a spatial point pattern process) can serve as a foundation from which more sophisticated integrated species distribution models that incorporate additional streams of monitoring data (e.g., stationary acoustics, captures) can be developed for North American bats.

Ecological Monographs↗

Special section overview: Effects of ecosystem change on North American percid populations.

Walleye Sander vitreus , Sauger S. canadensis , and Yellow Perch Perca flavescens (referred to as percids herein) are collectively among the most culturally and ecologically important fish species in North America. As ecosystems change in response to environmental drivers, such as climate change, nutrient loading, and invasive species, there is a need to understand how percid populations respond to these changes. To address this need, a symposium was held during the 81st Annual Midwest Fish and Wildlife Conference to bring fishery scientists and managers together to describe and discuss percid population responses to ecosystem change. Prevailing symposium themes included the challenge of identifying mechanisms responsible for population-level changes, developing strategies to adaptively manage for resilient fisheries, and consideration of scale, context, and methods when interpreting variable results. Given the uncertainty of how ecosystem changes affect percid populations, participants emphasized the importance of communicating uncertainties to stakeholders, implementing data-driven management strategies, setting realistic goals, and revising management actions in an adaptive framework. There was universal agreement on both the challenge and necessity of facilitating constructive engagement among stakeholders in cooperative decision making. Symposium participants identified knowledge gaps and discussed future efforts to build on our current understanding of percid populations, including continuation of long-term monitoring, improved standardization of evaluation metrics, implementing adaptive management experiments to identify causal relationships, development of more robust analytical methods, use of historical data sources, and refining techniques to realistically convey management options to stakeholders.

North American Journal of Fisheries Management↗

A new tool for studying waterfowl immune and metabolic responses: Molecular level analysis using kinome profiling

Here, we describe the design of an Anas‐ specific kinome peptide array that can be used to study the immunometabolic responses of mallard and American black duck to pathogens, contaminants, and environmental stress. The peptide arrays contain 2,642 unique phosphorylate‐able peptide sequences representing 1,900 proteins. These proteins cover a wide array of metabolic and immunological processes, and 758 Gene Ontology Biological processes are statistically significantly represented on the duck peptide array of those 164 contain the term “metabolic” and 25 “immune.” In addition, we conducted a comparison of mallard to American black duck at a genetic and proteomic level. Our results show a significant genomic and proteomic overlap between these two duck species, so that we have designed a cross‐reactive peptide array capable of studying both species. This is the first reported development of a wildlife species‐specific kinome peptide array.

Ecology and Evolution↗

A highly-contiguous and annotated genome assembly of the Lesser Prairie-Chicken (Tympanuchus pallidicinctus).

The Lesser Prairie-Chicken ( Tympanuchus pallidicinctus ; LEPC) is an iconic North American prairie grouse, renowned for ornate and spectacular breeding season displays. Unfortunately, the species has disappeared across much of its historical range, with corresponding precipitous declines in contemporary population abundance, largely due to climatic and anthropogenic factors. These declines led to a 2022 US Fish and Wildlife decision to identify and list two distinct population segments (DPSs; i.e., northern and southern DPSs) as threatened or endangered under the 1973 Endangered Species Act. Herein, we describe an annotated reference genome that was generated from a LEPC sample collected from the southern DPS. We chose a representative from the southern DPS because of the potential for introgression in the northern DPS, where some populations hybridize with the Greater Prairie-Chicken ( Tympanuchus cupido ). This new LEPC reference assembly consists of 206 scaffolds, an N50 of 45 Mb, and 15,563 predicted protein-coding genes. We demonstrate the utility of this new genome assembly by estimating genome-wide heterozygosity in a representative LEPC and in related species. Heterozygosity in a LEPC sample was 0.0024, near the middle of the range (0.0003–0.0050) of related species. Overall, this new assembly provides a valuable resource that will enhance evolutionary and conservation genetic research in prairie grouse.

Genome Biology and Evolution↗

Changes in waterfowl migration phenologies in central North America: Implications for future waterfowl conservation

Globally, migration phenologies of numerous avian species have shifted over the past half-century. Despite North American waterfowl being well researched, published data on shifts in waterfowl migration phenologies remain scarce. Understanding shifts in waterfowl migration phenologies along with potential drivers is critical for guiding future conservation efforts. Therefore, we utilized historical (1955–2008) nonbreeding waterfowl survey data collected at 21 National Wildlife Refuges in the mid- to lower portion of the Central Flyway to summarize changes in spring and autumn migration phenology. We examined changes in the timing of peak abundance from survey data at monthly intervals for each refuge and species (or species group; n = 22) by year and site-specific temperature for spring (Jan–Mar) and autumn (Oct–Dec) migration periods. For spring ( n = 187) and autumn ( n = 194) data sets, 13% and 9% exhibited statistically significant changes in the timing of peak migration across years, respectively, while the corresponding numbers for increasing temperatures were 4% and 9%. During spring migration, ≥80% of significant changes in the timing of spring peak indicated advancements, while 67% of significant changes in autumn peak timing indicated delays both across years and with increasing temperatures. Four refuges showed a consistent pattern across species of advancing spring migration peaks over time. Advancements in spring peak across years became proportionally less common among species with increasing latitude, while delays in autumn peak with increasing temperature became proportionally more common. Our study represents the first comprehensive summary of changes in spring and autumn migration phenology for Central Flyway waterfowl and demonstrates significant phenological changes during the latter part of the twentieth century.

Kansas, Nebraska, New Mexico, Oklahoma, Texas↗

Population trends of North American sea ducks as revealed by the Christmas Bird Count

Relative to other waterfowl, sea ducks are not well understood, yet evidence from a variety of analyses suggests that as many as 10 of the 15 species of North American sea ducks may be declining in population. However, because of the difficulty of conducting surveys of breeding populations and the lack of range-wide winter surveys, few data are available to assess the population trends of sea ducks with confidence. We analyze Audubon Christmas Bird Count data using hierarchical modeling methods that control for varying effort among circles and over time. These procedures allow us to assess early-winter relative density patterns among states and Bird Conservation Regions (BCRs) while also assessing trends in these regions and across the species North American range. Over the interval 1966 - 2003, continent-wide declines were observed in 1 of 11 species (the White-winged Scoter; -3.7%/yr). We compare CBC results to estimates of population change derived from the midwinter waterfowl survey conducted by the US Fish and Wildlife Service. The CBC does not effectively sample offshore populations of sea ducks; however, the CBC data can be used to assist in development of species-specific surveys, and CBC data can be used in combination with additional offshore sampling programs to better sample sea duck species.

Book chapter↗

U.S. Geological Survey science strategy to address white-nose syndrome and bat health in 2025–2029

Since its discovery in 2006, the fungal disease known as white-nose syndrome (WNS) has killed millions of bats. Of the 47 bat species native to the conterminous United States, Alaska, Hawaii, and Canada, 12 have been affected by WNS, including 3 endangered species and 1 proposed endangered species. WNS has also been detected in 40 States and 9 Canadian Provinces. U.S. Geological Survey (USGS) scientists have been critical in identifying the causal fungus for WNS ( Pseudogymnoascus destructans [Pd]), characterizing the effects of WNS, and tracking the spread of Pd in many bat populations in North America. The mission of the USGS WNS and Bat Health Science Team is to deliver integrated science in order to build resiliency into free-ranging bat populations through more effective WNS management, build capacity for bat health science, and enhance bat health information sharing across USGS science centers and cooperative research units as well as with stakeholders. The USGS can play an important role in supporting regional and national capacity building by providing resources and guidance to local, State, and Tribal management entities and by providing tools to enhance disease management. The USGS Ecosystems Mission Area’s Biological Threats and Invasive Species Research Program is the lead Federal program for free-ranging wildlife disease research and surveillance. As of 2024, guided by the science priorities set by the WNS Steering Committee, USGS scientists are engaged in a nationwide response to WNS. This work is done in close coordination with our partners at the U.S. Fish and Wildlife Service, National Park Service, Bureau of Land Management, U.S. Forest Service of the U.S. Department of Agriculture, U.S. Department of Defense, as well as State and Tribal agencies. In addition to conducting WNS research, the USGS is mapping the spread of WNS and coordinating the North American Bat Monitoring Program (NABat) to understand how WNS and other stressors affect the status and trends of native bats across their range. The USGS is supporting the national WNS response through four science goals: (1) provide situational awareness on the health of bat populations; (2) conduct ecological studies of bats along the gradient of disease vulnerability; (3) contribute actionable science to enhance the resiliency of bat populations; and (4) implement an adaptive, holistic approach to bat health.

Circular↗

A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing

The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing with the different types of detection errors. We developed a hierarchical modelling framework for estimating species occupancy from automated species-detection data. We explore design and optimization of data post-processing procedures to account for detection errors and generate accurate estimates. Our proposed method accounts for both imperfect detection and false positive errors and utilizes information about both occurrence and abundance of detections to improve estimation. Using simulations, we show that our method provides much more accurate estimates than models ignoring the abundance of detections. The same findings are reached when we apply the methods to two real datasets on North American frogs surveyed with acoustic recorders. When false positives occur, estimator accuracy can be improved when a subset of detections produced by the classification algorithm is post-validated by a human observer. We use simulations to investigate the relationship between accuracy and effort spent on post-validation, and found that very accurate occupancy estimates can be obtained with as little as 1% of data being validated. Automated monitoring of wildlife provides opportunity and challenges. Our methods for analysing automated species-detection data help to meet key challenges unique to these data and will prove useful for many wildlife monitoring programs.

Methods in Ecology and Evolution↗

Short-term effects of oil ingestion on American kestrels (Falco sparverius)

The Mexican Ixtoc oil well blowout resulted in extensive oil contamination along the Texas Gulf coast. This oil posed a potential hazard to migrating birds including the endangered peregrine falcon (Falco peregrinus). Laboratory tests with the American kestrel (Falco sparverius) indicated that the oil: water mixture gathered at the surface of the blowout site posed little acute hazard to falcons.

Journal of Wildlife Diseases↗