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At least 451 records · Page 25Linked to original sources

USGS2016

Non-invasive genetic sampling of Southern Mule Deer ( Odocoileus hemionus fuliginatus ) reveals limited movement across California State Route 67 in San Diego County

—The Southern Mule Deer is a mobile but non-migratory large mammal found throughout southern California and is a covered species in the San Diego Multi-Species Conservation Plan. We assessed deer movement and population connectivity across California State Route 67 and two smaller roads in eastern San Diego County using non-invasive genetic sampling. We collected deer scat pellets between April and November 2015, and genotyped pellets at 15 microsatellites and a sex determination marker. We successfully genotyped 71 unique individuals from throughout the study area and detected nine recapture events. Recaptures were generally found close to original capture locations (within 1.5 km). We did not detect recaptures across roads; however, pedigree analysis detected 21 first order relative pairs, of which approximately 20% were found across State Route 67. Exact tests comparing allele frequencies between groups of individuals in pre-defined geographic clusters detected significant genetic differentiation across State Route 67. In contrast, the assignment-based algorithm of STRUCTURE supported a single genetic cluster across the study area. Our data suggest that State Route 67 may reduce, but does not preclude, movement and gene flow of Southern Mule Deer.

California↗

USGS2023

Interactions among rainfall, fire, forbs and non-native grasses predict occupancy dynamics for the endangered Pacific pocket mouse (Perognathus longimembris pacificus) in a Mediterranean-type ecosystem

It is important to understand species-habitat relationships to implement effective adaptive management for rare species. However, it can be challenging to assess habitat associations and their relationships to abiotic stressors in dynamic habitats without the insights that can be gained from long-term monitoring. We report results from the first six years of extensive track tube monitoring of the largest two of three remaining extant populations of federally endangered Pacific pocket mouse ( Perognathus longimembris pacificus ) in a coastal Mediterranean-type ecosystem on Marine Corps Base, Camp Pendleton in southern California, USA. We used dynamic occupancy and structural equation modeling to assess potential drivers of population trends that included habitat, fire history, rainfall, disturbance, and the presence of other small mammals. We found that the variables that best predicted mouse occupancy were moderate to high forb and perennial herb cover (40–80%), and moderate to high open ground (20–70%) and low non-native grass cover (<20%), Non-native grass cover (>20%) was also a strong predictor of lower PPM colonization and increased extinction probabilities, with the extent of non-native grass cover being strongly influenced by annual rainfall and recency of fire. Our study adds to the growing literature on effects of invasive annual grasses on native species in Mediterranean-type ecosystems. We suggest that habitat management could be based upon promotion of open forb and perennial herb dominated habitats with reduction of non-native grasses by prescribed fire and other methods. These types of spatial and temporal monitoring programs can support land managers by creating a monitoring and management feedback loop. They can reveal landscape and environmental variables associated with species persistence, inform habitat management goals, and help managers to assess the success of management actions on populations of conservation concern.

California↗

USGS1994

Buffer zones of territories of gray wolves as regions of intraspecific strife

The locations of 22 territorial gray wolves (Canis lupus) killed by conspecifics in northeastern Minnesota were analyzed in a study involving radio-telemetry from 1968 through 1992. Twenty-three percent of the wolves were killed precisely on the borders of their estimated territories; 41%, within 1.0 km (16% of the radius of their mean-estimated territory) inside or outside the estimated edge; 91%, within 3.2 km inside or outside (50% of the radius of their mean-estimated territory) of the estimated edge. This appears to be the first report of intraspecific mortality of mammals along territorial boundaries.

Journal of Mammalogy↗

USGS2018

Functional attributes of ungulate migration: Landscape features facilitate movement and access to forage

Long‐distance migration by terrestrial mammals is a phenomenon critical to the persistence of populations, but such migrations are declining globally because of over‐harvest, habitat loss, and movement barriers. Increasingly, there is a need to improve existing routes, mitigate route segments affected by anthropogenic disturbance, and in some instances, determine whether alternative routes are available. Using a hypothesis‐driven approach, we identified landscape features associated with the primary functional attributes, stopovers and movement corridors, of spring migratory routes for mule deer in two study areas using resource selection functions. Patterns of selection for landscape attributes of movement corridors and stopovers mostly were similar; however, landscape features associated with movement corridors aligned better with areas that facilitated movement, whereas selection of stopovers was consistent with sites offering early access to spring forage. For movement corridors, deer selected for dry sites, low elevation, and low anthropogenic disturbance. For stopovers, deer selected for dry sites, with consistently early green‐up across years, south‐southwesterly aspects, low elevation, and low anthropogenic disturbance. Stopovers and movement corridors of a migratory route presumably promote different functions, but for a terrestrial migrant, patterns of habitat selection indicate that the same general habitat attributes may facilitate both movement and foraging in spring. Our findings emphasize the roles of topographical wetness, vegetation phenology, and anthropogenic disturbance in shaping use of the landscape during migration for this large herbivore. Avoiding human disturbance and tracking ephemeral forage resources appear to be a consistent pattern during migration, which reinforces the notion that movement during migration has a nutritional underpinning and disturbance potentially alters the net benefits of migration.

Wyoming↗

USGS2022

Where land and sea meet: Brown bears and sea otters

In Katmai National Park, Alaska, USA, we have seen changes in the number of brown bears and sea otters. The number of animals of a species a habitat can support is called carrying capacity. Even though bears live on land and sea otters live in the ocean, these two mammals share coastal habitats. Bears eat salmon, other fish, plants, clams, and beached whales. Sea otters feed on clams and other marine invertebrates. All these foods are influenced by the ocean. Recently, we have seen fewer bears but more sea otters! What changed? Many things, but several observations point to the ocean. There are fewer salmon, whales, and clams, so bears rely more on plants for food. Fewer clams mean sea otters must work harder to find food. Our studies are helping us to understand how and why carrying capacity for a given species may change over time.

Alaska↗

USGS2022

Scat as a source of DNA for population monitoring

Sampling fecal droppings (scat) to genetically identify individual animals is an established method for monitoring mammal populations and could be highly useful for monitoring reptile populations. Whereas existing protocols for obtaining DNA from reptile scat focus on analyses of whole, fresh scat deposited during animal handling, the collection of scat naturally deposited by reptiles in situ, as required for non-invasive population monitoring, requires protocols to extract highly degraded DNA. Using surface swabs from such scats can reduce PCR inhibition, ecological impacts of removing scat, and zoonotic risks. We report on three related but independently designed studies of DNA analyses from scat swabs of herbivorous reptiles under natural desert conditions: two free-ranging desert tortoise species (Agassiz's desert tortoise, Gopherus agassizii , California, US, and Morafka's desert tortoise, G. morafkai , Arizona, US) and the common chuckwalla (Sauromalus atar ) (Arizona, US, and Sonora, MX). We analyzed samples from both tortoise species with the same set of 16 microsatellites and chuckwalla samples with four mtDNA markers; studies also varied in swab preservation medium and DNA extraction method. Microsatellite amplification success per sample, defined as ≥9 loci with amplification, varied between studies, with 15% for Agassiz's desert tortoise and 42% Morafka's desert tortoise. For chuckwallas, we successfully amplified and sequenced 50% of samples. We recovered fragments up to 400 bp for tortoises and 980 bp for chuckwallas from scat swab samples. This study demonstrates that genotypes can successfully be obtained from swabs of herbivorous reptile scat collected in the field under natural environmental conditions and emphasizes that repeat amplifications are necessary for genetic identification of individuals from non-invasive samples.

Arizona, California↗

USGS1996

Planar PCB Hazards to Fish, Wildlife, and Invertebrates: A Synoptic Review

Ecological and toxicological aspects of polychlorinated biphenyls (PCBs) in the environment are reviewed with emphasis on biologically active congeners and fish and wildlife. Subtopics include sources and uses, chemical and biochemical properties, concentrations in field collections, lethal and sublethal effects, and recommendations for the protection of sensitive resources. All production of PCBs in the United States ceased in 1977. Of the 1.2 million tons of PCBs manufactured to date, about 65% are still in use in electrical equipment and 31% in various environmental compartments, and 4% were degraded or incinerated. The 209 PCB congeners and their metabolites show wide differences in biological effects. A significant part of the toxicity associated with commercial PCB mixtures is related to the presence of about 20 planar congeners, i.e., congeners without chlorine substitution in the ortho position. Toxic planar congeners, like other PCB congeners, have been detected in virtually all analyzed samples, regardless of collection locale. Planar PCB concentrations were usually highest in samples from near urban areas and in fat and liver tissues, filter-feeding bivalve mollusks, fish-eating birds, and carnivorous marine mammals. Adverse effects of planar PCBs on growth, survival, and reproduction are highly variable because of numerous biotic and abiotic modifiers, including interaction with other chemicals. In general, embryos and juveniles were the most sensitive stages tested to planar PCBs, and the chinook salmon, domestic chicken, mink, rhesus macaque, and laboratory white rat were among the most sensitive species. for protection of natural resources, most authorities now recommend (1) analyzation of environmental samples for planar and other potentially hazardous congeners; (2) exposure studies with representative species and specific congeners, alone and in combination with other environmental contaminants; (3) clarification of existing structure-induction-metabolism relations; and (4) more research on physiological and biochemical indicators of PCB-stress.

Contaminant Hazard Reviews↗

USGS2017

Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama

Genetic diversity and haplotype composition of the West Indian manatee (Trichechus manatus) population from the San San Pond Sak wetland in Bocas del Toro, Panama was studied using a segment of mitochondrial DNA (D’loop). No genetic information has been published to date for Panamanian populations. Due to the secretive behavior and small population size of the species in the area, DNA extraction was conducted from opportunistically collected fecal (N=20), carcass tissue (N=4) and bone (N=4) samples. However, after DNA processing only 10 samples provided good quality DNA for sequencing (3 fecal, 4 tissue and 3 bone samples). We found three haplotypes in total; two of these haplotypes are reported for the first time, J02 (N=3) and J03 (N=4), and one J01 was previously published (N=3). Genetic diversity showed similar values to previous studies conducted in other Caribbean regions with moderate values of nucleotide diversity (π= 0.00152) and haplotipic diversity (Hd= 0.57). Connectivity assessment was based on sequence similarity, genetic distance and genetic differentiation between San San population and other manatee populations previously studied. The J01 haplotype found in the Panamanian population is shared with populations in the Caribbean mainland and the Gulf of Mexico showing a reduced differentiation corroborated with Fst value between HSSPS and this region of 0.0094. In contrast, comparisons between our sequences and populations in the Eastern Caribbean (South American populations) and North Western Caribbean showed fewer similarities (Fst =0.049 and 0.058, respectively). These results corroborate previous phylogeographic patterns already established for manatee populations and situate Panamanian populations into the Belize and Mexico cluster. In addition, these findings will be a baseline for future studies and comparisons with manatees in other areas of Panama and Central America. These results should be considered to inform management decisions regarding conservation of genetic diversity, future controlled introductions, connectivity and effective population size of the West Indian manatee along the Central American corridor.

Bocas del Toro↗

USGS2007

Determining the pattern of cementum annuli and relationship to reproduction in male sea otters

Since the early 1990s, the southwestern Alaskan sea otter (Enhydra lutris) population has declined dramatically and the cause has yet to be determined. Population trajectories of large mammals are determined by three factors: survival rate, reproduction rate, and age of first reproduction (AFR). Of these three, AFR should respond first to environmental change. Life history theory predicts that AFR will be older with bottom-up causes (ie, food limitation) and younger when the cause of the decline is top-down (ie, predation), as there is usually abundant resources in this scenario. Traditionally, determining AFR required lethal sampling, which may not always be possible. Work on many mammalian species suggests that the width of annual cementum layers in teeth may decline when breeding begins. If so, examining teeth annuli may provide a nonlethal alternative for determining AFR. Ongoing research has shown this relationship in female sea otters, but male sea otters have not been tested. Sea otter testes and premolar teeth slides were collected by subsistence hunters working with the US Fish and Wildlife Service and the Alaska Sea Otter and Steller Sea Lion Commission from Alaska (1994– 2005). We determined the pattern in cementum annuli thickness for male sea otters across age by measuring annuli at three sites on each of the two slide sections available. We found that cementum annuli layers decreased with age, but found no correlation between cementum annuli and sexual maturity in male sea otters. This lack of correlation may be due to sampling error or different energy expenditures during reproduction for each sex. Since females expend large amounts of energy through gestation and lactation, we hypothesize that the width of female cementum annuli decreases at a much sharper rate when they reach AFR. The southwest Alaskan sea otter population has plummeted up to 90% since the early 1990s and the reason is unknown.1 Declines may be due to a bottom-up source caused by lack of food and habitat that occurs when populations are dense, in which case we would expect reproduction rates to decrease and age of first reproduction (AFR) to increase. However, circumstantial evidence suggests that the decline may be due to a top-down source, ie, predation.2 In this case, we would expect reproduction rates to increase and AFR to decrease due to lowered densities that coincide with top-down declines.3 An ongoing study of female sea otters has shown that past reproduction can be determined by analysis of cementum annuli in the teeth, and used to calculate AFR.4 Cementum annuli are annual deposits of minerals that occur on the root of a tooth that correspond to the growth of the animal (Figure 1). During summer and spring, growth is fast which accounts for the white area, but during winter, growth slows down and the cementum is compressed which accounts for a darkened line. In females, the relationship between cementum width declines and reproduction likely reflects the large expenditure of energy that is required during gestation and lactation. However, male and female mammals expend energy for reproduction in very distinct ways,3 and the same pattern of cementum decline may not be present in males. Since shifts in the life history strategy of males are poorly understood, we are interested in testing the relationship between cementum declines and reproduction in male sea otters using cementum analysis.

Ethnicity and Disease↗

USGS2005

Fossil shrews from Honduras and their significance for late glacial evolution in body size (Mammalia: Soricidae: Cryptotis)

Our study of mammalian remains excavated in the 1940s from McGrew Cave, north of Copán, Honduras, yielded an assemblage of 29 taxa that probably accumulated predominantly as the result of predation by owls. Among the taxa present are three species of small-eared shrews, genus Cryptotis . One species, Cryptotis merriami , is relatively rare among the fossil remains. The other two shrews, Cryptotis goodwini and Cryptotis orophila , are abundant and exhibit morphometrical variation distinguishing them from modern populations. Fossils of C. goodwini are distinctly and consistently smaller than modern members of the species. To quantify the size differences, we derived common measures of body size for fossil C. goodwini using regression models based on modern samples of shrews in the Cryptotis mexicana -group. Estimated mean length of head and body for the fossil sample is 72–79 mm, and estimated mean mass is 7.6–9.6 g. These numbers indicate that the fossil sample averaged 6–14% smaller in head and body length and 39–52% less in mass than the modern sample and that increases of 6–17% in head and body length and 65–108% in mass occurred to achieve the mean body size of the modern sample. Conservative estimates of fresh (wet) food intake based on mass indicate that such a size increase would require a 37–58% increase in daily food consumption. In contrast to C. goodwini , fossil C. orophila from the cave is not different in mean body size from modern samples. The fossil sample does, however, show slightly greater variation in size than is currently present throughout the modern geographical distribution of the taxon. Moreover, variation in some other dental and mandibular characters is more constrained, exhibiting a more direct relationship to overall size. Our study of these species indicates that North American shrews have not all been static in size through time, as suggested by some previous work with fossil soricids. Lack of stratigraphic control within the site and our failure to obtain reliable radiometric dates on remains restrict our opportunities to place the site in a firm temporal context. However, the morphometrical differences we document for fossil C. orophila and C. goodwini show them to be distinct from modern populations of these shrews. Some other species of fossil mammals from McGrew Cave exhibit distinct size changes of the magnitudes experienced by many northern North American and some Mexican mammals during the transition from late glacial to Holocene environmental conditions, and it is likely that at least some of the remains from the cave are late Pleistocene in age. One curious factor is that, whereas most mainland mammals that exhibit large-scale size shifts during the late glacial/postglacial transition experienced dwarfing, C. goodwini increased in size. The lack of clinal variation in modern C. goodwini supports the hypothesis that size evolution can result from local selection rather than from cline translocation. Models of size change in mammals indicate that increased size, such as that observed for C. goodwini , are a likely consequence of increased availability of resources and, thereby, a relaxation of selection during critical times of the year.

McGraw Cave↗

USGS2024

Establishment of terrestrial mammals on former reservoir beds following large dam removal on the Elwha River, Washington, USA

Terrestrial wildlife species are important yet often overlooked taxa in the recovery of ecosystems following dam removal. Their presence can shape ecosystem recovery, signal restoration of ecosystem function, and influence food web dynamics and nutrient transfer. We used camera traps to examine seasonal use of two former reservoir beds and an upstream reference reach by the mammalian community following the removal of two large dams on the Elwha River, Washington, USA. For certain taxa, we compared current species use to data collected prior to dam removal. Camera traps revealed use by at least fifteen mammal species, including but not limited to American black bear ( Ursus americanus ), Columbian black-tailed deer ( Odocoileus hemionus columbianus ), Roosevelt elk ( Cervus elaphus roosevelti ), puma ( Puma concolor ), coyotes ( Canis latrans ), bobcats ( Lynx rufus ), and snowshoe hares ( Lepus americanus ). Coyotes were found mostly lower in the watershed outside the Olympic National Park boundary, while other species were distributed throughout the restoration area. We did not see major differences in species composition between the restoration areas and the upstream reference reach, though number of detections across study reaches differed for most species. Unlike previous findings, black bears were observed across all seasons in this study, suggesting a shift in seasonal use since dam removal. Full restoration of the terrestrial wildlife community could take decades to unfold, but early patterns demonstrate rapid establishment and use by wildlife on new riparian surfaces that are expected to continue to evolve with restoration of fish and vegetation communities.

Washingotn↗

USGS2018

Wildlife underpass use and environmental impact assessment: A southern California case study

Environmental planners often rely on transportation structures (i.e., underpasses, bridges) to provide connectivity for animals across developed landscapes. Environmental assessments of predicted environmental impacts from proposed developments often rely on literature reviews or other indirect measures to establish the importance of wildlife crossings. Literature-based evaluations of wildlife crossings may not be accurate, and result in under-estimation of impacts or establishment of inappropriate mitigation measures. To investigate the adequacy of literature-based evaluations, we monitored wildlife use of a freeway underpass that had been identified as critically important to wildlife connectivity, and which was evaluated in an environmental review document. Photographs were obtained from a network of trail cameras over 3 years. Six mid- to large-sized native mammal species used the underpass and two other mammal species were photographed near the underpass but not using it. American badger ( Taxidea taxus ) was photographed at a higher rate in the underpass than in the surrounding area. Gray fox ( Urocyon cinereoargenteus ) was rarely detected in the underpass relative to surrounding habitats, whereas the absence of mule deer ( Odocoileus hemionus ) in the underpass was unexpected, given relatively frequent detection in adjacent habitats. These results differed from the environmental assessment in that American badger was listed as "potentially" present while mule deer were expected to use the underpass. Results underscore importance of gathering data to document wildlife use of corridors, because some species do not or rarely take advantage of apparently suitable corridors, while others may be present when assumed to be absent.

California↗

USGS2008

Transcriptional profiling of MHC class I genes in rainbow trout infected with infectious hematopoietic necrosis virus

Major histocompatibility complex (MHC) molecules are important mediators of cell-mediated immunity in vertebrates. MHC class IA molecules are important for host anti-viral immunity as they present intracellular antigens and regulate natural killer cell (NK) activity. MHC class Ib molecules on the other hand are less understood and have demonstrated diverse immune and non-immune functions in mammals. Rainbow trout possess a single classical MHC IA locus ( Onmy -UBA) that is believed to function similar to that of mammalian MHC class Ia. Numerous MHC class Ib genes with undetermined functions have also been described in trout. Here we utilize quantitative reverse transcriptase PCR (qRT-PCR) techniques to survey the levels of basal and inducible transcription for selected trout MHC class Ib genes, sIgM and sentinels of IFN induction in response to viral infection. Basal transcription of all the class Ib genes examined in this study was lower than Onmy -UBA in naïve fish. UBA, along with all of the non-classical genes were induced in fish infected with virus but not in control fish. Our results support a non-classical designation for the majority of the class IB genes surveyed in this study based upon expression levels while also indicating that they may play an important role in anti-viral immunity in trout.

Molecular Immunology↗

USGS1994

Cyanide and migratory birds at gold mines in Nevada, USA

Since the mid-1980s, cyanide in heap leach solutions and mill tailings ponds at gold mines in Nevada has killed a large but incompletely documented number of wildlife (>9,500 individuals, primarily migratory birds). This field investigation documents the availability of cyanide at a variety of ‘typical’ Nevada gold mines during 1990 and 1991, describes wildlife reactions to cyanide solutions, and discusses procedures for eliminating wildlife loss from cyanide poisoning. Substantial progress has been made to reduce wildlife loss. About half of the mill tailings ponds (some up to 150 ha) in Nevada have been chemically treated to reduce cyanide concentrations (the number needing treatment is uncertain) and many of the smaller heap leach solution ponds and channels are now covered with netting to exclude birds and most mammals. The discovery of a cyanide gradient in mill tailings ponds (concentration usually 2–3 times higher at the inflow point than at reclaim point) provides new insight into wildlife responses (mortality) observed in different portions of the ponds. Finding dead birds on the tops of ore heaps and associated with solution puddling is a new problem, but management procedures for eliminating this source of mortality are available. A safe threshold concentration of cyanide to eliminate wildlife loss could not be determined from the field data and initial laboratory studies. New analytical methods may be required to assess further the wildlife hazard of cyanide in mining solutions.

Nevada↗

USGS2013

Legal, ethical, and procedural bases for the use of aseptic techniques to implant electronic devices

The popularity of implanting electronic devices such as transmitters and data loggers into captive and free-ranging animals has increased greatly in the past two decades. The devices have become smaller, more reliable, and more capable (Printz 2004; Wilson and Gifford 2005; Metcalfe et al. 2012). Compared with externally mounted devices, implanted devices are largely invisible to external viewers such as tourists and predators; exist in a physically protected, thermally stable environment in mammals and birds; and greatly reduce drag and risk of entanglement. An implanted animal does not outgrow its device or attachment method as can happen with collars and harnesses, which allows young animals to be more safely equipped. However, compared with mounting external devices, implantation requires greater technical ability to perform the necessary anesthesia, analgesia, and surgery. More than 83% of publications in the 1990s that used radiotelemetry on animals assumed that there were no adverse effects on the animal (Godfrey and Bryant 2003). It is likely that some studies using implanted electronic devices have not been published due to a high level of unexpected mortality or to aberrant behavior or disappearance of the implanted animals, a phenomenon known as the “file drawer” problem (Rosenthal 1979; Scargle 2000). The near absence of such studies from the published record may be providing a false sense of security that procedures being used are more innocuous than they actually are. Similarly, authors sometimes state that it was unlikely that device implantation was problematic because study animals appeared to behave normally, or authors state that previous investigators used the same technique and saw no problems. Such statements are suppositions if no supporting data are provided or if the animals were equipped because there was no other way to follow their activity. Moreover, such suppositions ignore other adverse effects that affect behavior indirectly, and animals often mask the signs of infection to avoid attracting predators (Wobeser 2006). Guidance specific to sterilization of electronic devices for implantation is limited in the wildlife record (Burger et al. 1994; Mulcahy 2003). Few biologists have been formally trained in aseptic technique, but most biologists know that electronic devices should be treated in some way to reduce the chance for infection of the host animal by bacteria, viruses, parasites, and fungi. Most biologists (73%) who implant devices into fishes believe aseptic techniques are important (Wagner and Cooke 2005). However, I maintain that many biologists find it difficult to place the concept of asepsis into practice in their work because of confusion about what constitutes aseptic technique, a lack of surgical knowledge and training, the perception of increased costs, or the belief that aseptic surgeries are impractical or unnecessary for their application. Some have even argued that, while compromising surgical techniques in the field might result in complications or mortalities, the money saved would allow for a compensatory increase in sample size (Anderson and Talcott 2006). In this paper I define aseptic surgical techniques, document the legal and professional guidance for performing aseptic surgeries on wild animals, and present options for sterilizing electronic devices and surgical instruments for field use.

Journal of Fish and Wildlife Management↗

USGS2026

Colonization of southern flying squirrels (Glaucomys volans) to urban Nebraska: Range expansion or human assisted translocation?

Southern flying squirrels ( Glaucomys volans; Linnaeus 1758) were first observed in Lincoln, Nebraska, in 2018, 80 km north of their described range. Given that southern flying squirrels are a species of concern within Nebraska, determining the origin of this new population (natural expansion or pet-trade) garnered interest from state biologists. Further, the recent colonization of Lincoln by southern flying squirrels presents a unique opportunity to investigate the genetic implications of a founding event on a small arboreal mammal. The Lincoln population had genetic characteristics suggestive of a single-event colonization with fewer rare alleles and lower genetic diversity than potential source populations and a high genetic variation between populations. Sample size and absence of other geographically close populations in our data set make it difficult to ascertain the origin of the Lincoln population. Based on shared co-ancestry and membership assignment clustering algorithms, the Lincoln population had greater genetic associations with an individual sampled from the native south-eastern Nebraska population relative to other studied locations, suggesting that Lincoln was colonized by a native population.

Nebraska↗

USGS2023

Genetic architecture and evolution of color variation in American black bears

Color variation is a frequent evolutionary substrate for camouflage in small mammals, but the underlying genetics and evolutionary forces that drive color variation in natural populations of large mammals are mostly unexplained. The American black bear, Ursus americanus ( U. americanus ), exhibits a range of colors including the cinnamon morph, which has a similar color to the brown bear, U. arctos , and is found at high frequency in the American southwest. Reflectance and chemical melanin measurements showed little distinction between U. arctos and cinnamon U. americanus individuals. We used a genome-wide association for hair color as a quantitative trait in 151 U. americanus individuals and identified a single major locus (p < 10 −13 ). Additional genomic and functional studies identified a missense alteration (R153C) in Tyrosinase-related protein 1 ( TYRP1 ) that likely affects binding of the zinc cofactor, impairs protein localization, and results in decreased pigment production. Population genetic analyses and demographic modeling indicated that the R153C variant arose 9.36 kya in a southwestern population where it likely provided a selective advantage, spreading both northwards and eastwards by gene flow. A different TYRP1 allele, R114C, contributes to the characteristic brown color of U. arctos but is not fixed across the range.

Current Biology↗

USGS2018

International meeting on sarcoptic mange in wildlife, June 2018, Blacksburg, Virginia, USA

Sarcoptic mange is a globally distributed disease caused by the burrowing mite Sarcoptes scabiei , which also causes scabies in humans. A wide and increasing number of wild mammal species are reported to be susceptible to mange; however, the impacts of the disease in wildlife populations, mechanisms involved in its eco-epidemiological dynamics, and risks to public and ecosystem health are still unclear. Major gaps exist concerning S. scabiei host specificity and the mechanisms involved in the different presentations of the disease, which change between individuals and species. Immunological responses to the mite may have a relevant role explaining these different susceptibilities, as these affect the clinical signs, and consequently, the severity of the disease. Recently, some studies have suggested sarcoptic mange as an emerging threat for wildlife, based on several outbreaks with increased severity, geographical expansions, and novel wild hosts affected. Disease ecology experts convened for the “International Meeting on Sarcoptic Mange in Wildlife” on 4–5 June 2018, hosted by the Department of Fish and Wildlife Conservation at Virginia Tech in Blacksburg, Virginia, USA. The meeting had a structure of (i) pre-workshop review; (ii) presentation and discussions; and (iii) identification of priority research questions to understand sarcoptic mange in wildlife. The workgroup concluded that research priorities should be on determining the variation in modes of transmission for S. scabiei in wildlife, factors associated with the variation of disease severity among species, and long-terms effects of the mange in wildlife populations. In this note we summarize the main discussions and research gaps identified by the experts.

Parasites & Vectors↗