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At least 451 records · Page 25Linked to original sources

Trends in oyster populations in the northeastern Gulf of Mexico: An assessment of river discharge and fishing effects over time and space

Within the Big Bend region of the northeastern Gulf of Mexico, one of the least developed coastlines in the continental USA, intertidal and subtidal populations of eastern oyster Crassostrea virginica (hereafter referred to as “oyster”) are a critical ecosystem and important economic constituent. We assessed trends in intertidal oyster populations, river discharge, and commercial fishing activity in the Suwannee River estuary within the Big Bend region using fisheries‐independent data from irregular monitoring efforts and publicly available environmental data. We used generalized linear models to evaluate counts of oysters from line‐transect surveys over time and space. We assessed model performance using simulation to understand potential bias and then evaluated whether these counts were related to freshwater inputs from the Suwannee River and commercial oyster fishing effort and landings at different time lags. We found that intertidal oyster counts have declined over time and that most of these declines are found in inshore intertidal oyster bars, which are becoming degraded. We also found a significant relationship between oyster counts and a 1‐year lag on mean daily Suwannee River discharge, but including commercial fishery trips or landings did not improve model fit. It is unclear whether declines in intertidal oyster bars are offset by formation of new oyster reefs elsewhere. These results quantify rapid declines in intertidal oyster reefs in a region of coastline with high conservation value that can be used to inform ongoing and proposed restoration projects in the region.

Florida↗

Migration water temperature and heat stress assessments in western Alaska Chinook salmon overlapping the 2019 heatwave

Chinook salmon population declines span their geographic range with climate hypothesized as a major driver. Concerns of warming freshwater temperatures in their northern range gained urgency during 2019 when a heatwave coincided with premature mortality. This study examined heat stress during the 2019 heatwave compared to subsequent years and described water temperatures in western Alaska to understand the degree to which freshwater temperatures may be a stressor. Heat stress was prevalent among Chinook salmon captured in the 2019 heatwave (Kuskokwim tributaries: 90% in Kwethluk and 63% Takotna river), and variable in subsequent years (∼8% to 60% across Kuskokwim tributaries and Norton Sound rivers). A review of water temperature data indicated that potentially stressful temperatures (≥18 °C) were most common and prolonged in the Yukon River, moderately common and prolonged in the Kuskokwim River, and relatively rare in the Norton Sound region. Water temperatures in 2019 broke several records for overall maximum and frequency of temperatures ≥ 18 °C. Migration water temperatures and heat stress in northern Pacific salmon habitats vary more widely than previously recognized (up to 25 °C).

Alaska↗

Review of and recommendations for monitoring contaminants and their effects in the San Francisco Bay−Delta

Legacy and current-use contaminants enter into and accumulate throughout the San Francisco Bay−Delta (Bay−Delta), and are present at concentrations with known effects on species important to this diverse watershed. There remains major uncertainty and a lack of focused research able to address and provide understanding of effects across multiple biological scales, despite previous and ongoing emphasis on the need for it. These needs are challenging specifically because of the established regulatory programs that often monitor on a chemical- by-chemical basis, or in which decisions are grounded in lethality-based endpoints. To best address issues of contaminants in the Bay−Delta, monitoring efforts should consider effects of environmentally relevant mixtures and sub- lethal impacts that can affect ecosystem health. These efforts need to consider the complex environment in the Bay−Delta including variable abiotic (e.g., temperature, salinity) and biotic (e.g., pathogens) factors. This calls for controlled and focused research, and the development of a multi-disciplinary contaminant monitoring and assessment program that provides information across biological scales. Information gained in this manner will contribute toward evaluating parameters that could alleviate ecologically detrimental outcomes. This review is a result of a Special Symposium convened at the University of California−Davis (UCD) on January 31, 2017 to address critical information needed on how contaminants affect the Bay−Delta. The UCD Symposium focused on new tools and approaches for assessing multiple stressor effects to freshwater and estuarine systems. Our approach is similar to the recently proposed framework laid out by the U.S. Environmental Protection Agency (USEPA) that uses weight of evidence to scale toxicological responses to chemical contaminants in a laboratory, and to guide the conservation of priority species and habitats. As such, we also aimed to recommend multiple endpoints that could be used to promote a multi-disciplinary understanding of contaminant risks in Bay−Delta while supporting management needs.

California↗

Cryptic lives of conspicuous animals: Otolith chemistry chronicles life histories of coastal lagoon fishes

Bar-built coastal lagoons are dynamic ecosystems at the land-sea interface that are important habitats for a variety of species. This study examined the habitat ecology of two lagoon species, the endangered Tidewater Goby ( Eucyclogobius newberryi ) and the Prickly Sculpin ( Cottus asper ) by reconstructing individual life histories from patterns in the concentration of the element Sr (as ratioed to Ca; Sr:Ca) in otoliths. Specific objectives were to (1) elucidate any movements of individual fishes among three primary habitat components of typical bar-built lagoon systems: coastal ocean, brackish lagoon, and freshwater watershed streams, and (2) determine if either species exhibited a consistent life history as defined by a stereotypical otolith Sr:Ca chronology, which could be indicative of a consistent range of salinity or temperature occupied through ontogeny. Results suggested that Tidewater Goby was a lagoon resident and that Prickly Sculpin exhibited migrations between lagoon and watershed stream habitats. There was no strong evidence in either species of ocean occupancy or of a stereotypical Sr:Ca chronology, the latter suggesting the full range of available lagoon habitat in terms of salinity and temperature was likely utilized at all life stages. These findings add to the body of evidence that bar-built lagoons are not isolated habitats, and holistic management of these habitats with adjoining watershed and marine environments could increase habitat connectivity across the landscape, with potential benefits to fishes.

California↗

Dietary segregation of pelagic and littoral fish assemblages in a highly modified tidal freshwater estuary

Estuarine food webs are highly variable and complex, making identification of their trophic pathways difficult. Energy for the food web of the San Francisco Estuary is thought to be based largely on in situ phytoplankton production, but little attention has been paid to littoral habitats, where other energy sources may be important. We analyzed the stomach contents of over 960 juvenile fishes and the stable carbon and nitrogen isotope ratios of these fishes and their potential food resources in pelagic and littoral habitats from the tidal freshwater area of the estuary. The mixing model IsoSource was used to examine energy sources important to consumers. Our results show evidence of two predominant food web pathways. Pelagic fishes and some littoral fishes showed strong dependence on a zooplankton–phytoplankton trophic pathway. However, the majority of fishes in littoral habitats had diets and carbon isotope ratios consistent with energy arising from submerged aquatic vegetation and epiphytic macroalgae. IsoSource revealed that the overall majority of nutrition of littoral fishes originated from consumption of grazer amphipods. Examining both stable isotopes and stomach contents allowed us to identify a food web with contributions to resident fishes that had been previously underestimated in the estuary. This study provides insight to how estuarine food webs have changed over the last few decades and highlights why the functions of habitats must be understood for effective restoration planning.

Marine and Coastal Fisheries: Dynamics, Management↗

Dietary bioavailability of uranium to a model freshwater invertebrate

Uranium (U) mining increases environmental exposures. Understanding how U is taken up by organisms can aid in evaluating the potential for bioaccumulation and toxicity. Although the importance of aqueous geochemical speciation is well recognized for U bioavailability after dissolved exposures, far less is known about the processes controlling U bioavailability after dietary exposures. This study characterizes the biogeochemical drivers of dietary U uptake in the freshwater snail Lymnaea stagnalis in laboratory experiments. Solids tested included benthic diatoms pre-exposed to dissolved U(VI), soils from contaminated U mine sites, and colloidal hydrous ferric oxide (HFO) synthesized in the presence of dissolved U(VI) or with U complexed by natural organic matter (NOM). Results showed that U was bioavailable from all solids. Uranium assimilation efficiency (AE), a proxy for dietary U bioavailability, varied among solids. AE was lowest for the U-contaminated soils (25 ± 17%) and highest for the U-laden diatoms (71 ± 13%). AE varied slightly among HFO preparations, suggesting modest influences of NOM and iron on U bioavailability. Increases in dietary U exposures reduced feeding rates, and the extent of feeding inhibition appeared inversely related to U bioavailability. The high U assimilation and range of bioavailability have implications for toxicity risks inferred without considering dietary uptake.

Environmental Science and Technology↗

Anaerobic hydrocarbon degradation in petroleum-contaminated harbor sediments under sulfate-reducing and artificially imposed iron-reducing conditions

The potential use of iron(III) oxide to stimulate in-situ hydrocarbon degradation in anaerobic petroleum-contaminated harbor sediments was investigated. Previous studies have indicated that Fe(III)-reducing bacteria (FeRB) can oxidize some electron donors more effectively than sulfate- reducing bacteria (SRB). In contrast to previous results in freshwater sediments, the addition of Fe(III) to marine sediments from San Diego Bay, CA did not switch the terminal electron-accepting process (TEAP) from sulfate reduction to Fe-(III) reduction. Addition of Fe(III) also did not stimulate anaerobic hydrocarbon oxidation. Exposure of the sediment to air [to reoxidize Fe(II) to Fe(III)] followed by anaerobic incubation of the sediments, resulted in Fe-(III) reduction as the TEAP, but contaminant degradation was not stimulated and in some instances was inhibited. The difference in the ability of FeRB to compete with the SRB in the different sediment treatments was related to relative population sizes. Although the addition of Fe(III) did not stimulate hydrocarbon degradation, the results presented here as well as other recent studies demonstrate that there may be significant anaerobic hydrocarbon degradation under sulfate-reducing conditions in harbor sediments.

Environmental Science & Technology↗

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

California↗

A biodynamic understanding of dietborne metal uptake by a freshwater invertebrate

Aquatic organisms accumulate metals from dissolved and particulate phases. Dietborne metal uptake likely prevails in nature, but the physiological processes governing metal bioaccumulation from diet are not fully understood. We characterize dietborne copper, cadmium, and nickel uptake by a freshwater gastropod (Lymnaea stagnalis) both in terms of biodynamics and membrane transport characteristics. We use enriched stable isotopes to trace newly accumulated metals from diet, determine food ingestion rate (IR) and estimate metal assimilation efficiency (AE). Upon 18-h exposure, dietborne metal influx was linear over a range encompassing most environmental concentrations. Dietary metal uptake rate constants (kuf) ranged from 0.104 to 0.162 g g -1 day-1, and appeared to be an expression of transmembrane transport characteristics. Although kuf values were 1000-times lower than uptake rate constants from solution, biodynamic modeling showed that diet is the major Cd, Cu, and Ni source in nature. AE varied slightly among metals and exposure concentrations (84-95%). Suppression of Cd and Cu influxes upon exposure to extreme concentrations coincided with a 10-fold decrease in food IR, suggesting that feeding inhibition could act as an end point for dietary metal toxicity in L. stagnalis.

Environmental Science & Technology↗

Mixed evidence for biotic homogenization of southern Appalachian fish communities

Anthropogenic impacts on the landscape can drive biotic homogenization, whereby distinct biological communities become more similar to one another over time. Land-use change in the Southern Appalachian region is expected to result in homogenization of the highly diverse freshwater fish communities as in-stream habitat alterations favor widespread cosmopolitan species at the expense of more narrowly distributed highland endemic species. We compiled four datasets spanning 25 years to (1) evaluate the effects of environmental factors on relative abundance and richness of highland endemic vs. cosmopolitan species in this region and (2) test for taxonomic homogenization, measured as a change in beta diversity over time. We found that several environmental factors differentially affected highland endemic and cosmopolitan species, with the proportion of forested land cover in a watershed most strongly predicting higher relative abundance and richness of highland endemic species. Our analysis of beta diversity change, however, shows mixed evidence of taxonomic homogenization, depending on how common species are weighted. Shifts in community composition, with or without homogenization, may warrant attention in biodiversity conservation planning.

Georgia, North Carolina↗

The Southwestern Pond Turtle (Actinemys pallida) in Baja California, Mexico: New localities and persistent threats

The Southwestern Pond Turtle ( Actinemys pallida ), the only native freshwater turtle in Baja California, is experiencing alarming population declines, echoing global patterns observed in freshwater turtles. We conducted comprehensive field surveys across the major drainages of northwestern Baja California to delineate the species' current distribution, identify critical threats to its persistence, and provide guidance for conservation actions. We documented the continued presence of A. pallida at 27 sites across 10 watersheds, ranging from sea level to 1,525 m in elevation. These include nine historically known sites and 18 newly recorded localities. The most pervasive threats we identified were habitat degradation, the proliferation of invasive aquatic species, and unsustainable water extraction. Despite these pressures, our findings confirm that A. pallida still occupies much of its historical range. However, urgent ecological research is needed to inform evidence-based strategies that ensure the long-term viability of this imperiled species.

Baja California↗

Movement patterns of Antillean manatees in Chetumal Bay (Mexico) and coastal Belize: A challenge for regional conservation

Information from 15 satellite-tracked Antillean manatees (Trichechus manatus manatus) was analyzed in order to assess individual movements, home ranges, and high-use areas for conservation decisions. Manatees were captured in Chetumal Bay, Mexico, and tagged with Argos-monitored satellite transmitters. Location of the manatees and physical characteristics were assessed to describe habitat properties. Most manatees traveled to freshwater sources. The Maximum Area Size (MAS) for each manatee was determined using the observation-area method. Additional kernel densities of 95% home range and 50% Center of Activity (COA) were also calculated, with manatees having 1–3 COAs. Manatees exhibited two different movement patterns: remaining in Chetumal Bay, and long-distance (up to 240 km in 89 d). The residence time in Chetumal Bay was higher for females (89.6% of time) than for males (72.0%), but the daily travel rate (0.4–0.5 km/d) was similar for both sexes. Most of the COAs fell within Natural Protected Areas (NPA). However, manatees also travel for long distances into unprotected areas, where they face uncontrolled boat traffic, fishing activities, and habitat loss. Conservation of movement corridors may promote long-distance movements and facilitate genetic exchange.

Chetumal Bay↗

Arctic lake physical processes and regimes with implications for winter water availability and management in the national petroleum reserve alaska

Lakes are dominant landforms in the National Petroleum Reserve Alaska (NPRA) as well as important social and ecological resources. Of recent importance is the management of these freshwater ecosystems because lakes deeper than maximum ice thickness provide an important and often sole source of liquid water for aquatic biota, villages, and industry during winter. To better understand seasonal and annual hydrodynamics in the context of lake morphometry, we analyzed lakes in two adjacent areas where winter water use is expected to increase in the near future because of industrial expansion. Landsat Thematic Mapper and Enhanced Thematic Mapper Plus imagery acquired between 1985 and 2007 were analyzed and compared with climate data to understand interannual variability. Measured changes in lake area extent varied by 0.6% and were significantly correlated to total precipitation in the preceding 12 months (p < 0.05). Using this relation, the modeled lake area extent from 1985 to 2007 showed no long-term trends. In addition, high-resolution aerial photography, bathymetric surveys, water-level monitoring, and lake-ice thickness measurements and growth models were used to better understand seasonal hydrodynamics, surface area-to-volume relations, winter water availability, and more permanent changes related to geomorphic change. Together, these results describe how lakes vary seasonally and annually in two critical areas of the NPRA and provide simple models to help better predict variation in lake-water supply. Our findings suggest that both overestimation and underestimation of actual available winter water volume may occur regularly, and this understanding may help better inform management strategies as future resource use expands in the NPRA. ?? 2008 Springer Science+Business Media, LLC.

Environmental Management↗

Comparative evaluation of statistical and mechanistic models of Escherichia coli at beaches in southern Lake Michigan

Statistical and mechanistic models are popular tools for predicting the levels of indicator bacteria at recreational beaches. Researchers tend to use one class of model or the other, and it is difficult to generalize statements about their relative performance due to differences in how the models are developed, tested, and used. We describe a cooperative modeling approach for freshwater beaches impacted by point sources in which insights derived from mechanistic modeling were used to further improve the statistical models and vice versa. The statistical models provided a basis for assessing the mechanistic models which were further improved using probability distributions to generate high-resolution time series data at the source, long-term &ldquo;tracer&rdquo; transport modeling based on observed electrical conductivity, better assimilation of meteorological data, and the use of unstructured-grids to better resolve nearshore features. This approach resulted in improved models of comparable performance for both classes including a parsimonious statistical model suitable for real-time predictions based on an easily measurable environmental variable (turbidity). The modeling approach outlined here can be used at other sites impacted by point sources and has the potential to improve water quality predictions resulting in more accurate estimates of beach closures.

Lake Michigan, Ogden Dunes↗

Water, Energy, and Biogeochemical Budgets (WEBB) program: Data availability and research at the Northern Temperate Lakes site in north-central Wisconsin

More than three thousand kettle lakes, widely dispersed within a mixed temperate forest ecosystem, are predominant features of the Northern Highland area of north-central Wisconsin. A hydrological and biogeochemical investigation of seven of these lakes and their watershed area is currently in progress as part of the Water, Energy, and Biogeochemical Budgets (WEBB) program of the U.S. Geological Survey. The objectives of the overall WEBB program are to: (1) improve understanding of processes controlling water, energy, and biogeochemical fluxes in freshwater systems, the interactions among those processes, and their relations to climatic variables; and (2) improve the capability to predict freshwater, energy, and biogeochemical budgets over a range of spatial and temporal scales. The focus of the WEBB project in Wisconsin is hydrologic research in the Northern Temperate Lakes (NTL) area of the state. Based on the premise that an understanding of hydrologic and biogeochemical cycles in the watershed is predicated on a thorough understanding of the individual components that control the water flow, the project involves a detailed study of the hydrologic budget, including the roles of rainfall, streamflow, ground water, and flow in the unsaturated zone. It also involves investigation of ground-water/ surface-water interactions. The objectives of the Northern Temperate Lakes WEBB project are to: (1) describe processes controlling water and solute fluxes in the NTL watersheds; (2) examine interactions among those processes and their relations to climatic variables; and (3) improve the capability to predict changes in water and solute fluxes for a range of spatial and temporal scales. A variety of procedures will be used to address the objectives of the project including: installation of piezometers, lysimeters, stream-gaging sites, precipitation collectors, climate-monitoring instruments; analysis of transport of nutrients and other solutes through the system; analysis of changes in isotopic composition of water; and temperature profiling. The implementation of these procedures is described in this report. The NTL-WEBB study area includes seven lakes that are also the site of a Long-Term Ecological Research (LTER) project, sponsored by the National Science Foundation. This project incorporates diverse research investigations conducted by faculty and research associates of the University of Wisconsin-Madison. The research orientation of NTL-LTER is principally toward aquatic ecology and geochemistry of the lakes. The WEBB research plan, with its emphasis on hydrologic processes in the lake watersheds, is designed to complement and enhance the LTER work.

Wisconsin↗

Evidence of prevalent heat stress in Yukon River Chinook salmon

Migrating adult Pacific salmon ( Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon ( O. tshawytscha ) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific salmon population. Water temperatures greater than 18 °C have occurred almost annually in the Yukon River and correspond with low population abundance since the 1990s. Using gene transcription products and heat shock protein 70 biomarkers validated by field experiment, we identified heat stress in half of Chinook salmon examined (54%, n = 477) across three mainstem locations and three tributaries in 2016–2017. Biomarkers tracked wide variation in water temperature (14–23 °C) within a tributary. The proportion of salmon with heat stress differed between years at four of the six locations, with more prevalent heat stress in the warmer year. This work demonstrates that warming water temperatures are currently affecting northern populations of Pacific salmon.

Alaska↗

Reassessing particulate organic carbon dynamics in the highly disturbed San Francisco Bay Estuary

Environmental research has been shifting toward a new normal in which a primary focus is to capture change that may be accelerating. In this study, we collected particulate samples in the northern San Francisco Bay Estuary (SFBE) in the fall of 2011 through the spring of 2012 in order to assess vascular plant contributions across both time and space and to compare our findings with a similar set of samples from 1990 to 1992. Across the ∼20-year span, we detected (1) decreasing C:N a ratios (averages ± SD of 12.5 ± 2.5 vs. 8.8 ± 1.4, significant t -test with p < 0.0001); (2) distinct shifts in chlorophyll vs. salinity, with higher chlorophyll concentrations shifting toward freshwater; and (3) greater relative proportions of vascular plant carbon that also appears less degraded (as indicated by lignin measurements) shifting from freshwater toward higher salinities. Lignin compositional data (syringyl:vanillyl and cinnamyl:vanillyl) suggest that increased lignin content in the more saline samples could be derived from wetland materials, while a two-endmember mixing model indicates that a significant portion of the particulate organic carbon (POC) in the western sites (50–60% as an upper bound, 13–15% as a lower bound) could be wetland-derived. This has potential implications for the lower food web, given recent work that demonstrates selective feeding by copepods on wetland detrital material in the northern SFBE. The latter has ramifications for proposed wetland restoration within the SFBE and Sacramento River/San Joaquin River Delta system, namely, that restored wetlands could confer important benefits toward the food web. Equally important is to prioritize continued monitoring of particulate organic matter cycling in the SFBE system to make sure that changing conditions are accounted for in any management decision.

California↗

Evidence for plunging river plume deposits in the Pahrump Hills member of the Murray formation, Gale crater, Mars

Recent robotic missions to Mars have offered new insights into the extent, diversity and habitability of the Martian sedimentary rock record. Since the Curiosity rover landed in Gale crater in August 2012, the Mars Science Laboratory Science Team has explored the origins and habitability of ancient fluvial, deltaic, lacustrine and aeolian deposits preserved within the crater. This study describes the sedimentology of a ca 13 m thick succession named the Pahrump Hills member of the Murray formation, the first thick fine‐grained deposit discovered in situ on Mars. This work evaluates the depositional processes responsible for its formation and reconstructs its palaeoenvironmental setting. The Pahrump Hills succession can be sub‐divided into four distinct sedimentary facies: (i) thinly laminated mudstone; (ii) low‐angle cross‐stratified mudstone; (iii) cross‐stratified sandstone; and (iv) thickly laminated mudstone–sandstone. The very fine grain size of the mudstone facies and abundant millimetre‐scale and sub‐millimetre‐scale laminations exhibiting quasi‐uniform thickness throughout the Pahrump Hills succession are most consistent with lacustrine deposition. Low‐angle geometric discordances in the mudstone facies are interpreted as ‘scour and drape’ structures and suggest the action of currents, such as those associated with hyperpycnal river‐generated plumes plunging into a lake. Observation of an overall upward coarsening in grain size and thickening of laminae throughout the Pahrump Hills succession is consistent with deposition from basinward progradation of a fluvial‐deltaic system derived from the northern crater rim into the Gale crater lake. Palaeohydraulic modelling constrains the salinity of the ancient lake in Gale crater: assuming river sediment concentrations typical of floods on Earth, plunging river plumes and sedimentary structures like those observed at Pahrump Hills would have required lake densities near freshwater to form. The depositional model for the Pahrump Hills member presented here implies the presence of an ancient sustained, habitable freshwater lake in Gale crater for at least ca 10 3 to 10 7 Earth years.

Sedimentology↗