SEARCH · USGS Science

Results for “Estuaries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 451 records · Page 25Linked to original sources

USGS2020

Reassessing particulate organic carbon dynamics in the highly disturbed San Francisco Bay Estuary

Environmental research has been shifting toward a new normal in which a primary focus is to capture change that may be accelerating. In this study, we collected particulate samples in the northern San Francisco Bay Estuary (SFBE) in the fall of 2011 through the spring of 2012 in order to assess vascular plant contributions across both time and space and to compare our findings with a similar set of samples from 1990 to 1992. Across the ∼20-year span, we detected (1) decreasing C:N a ratios (averages ± SD of 12.5 ± 2.5 vs. 8.8 ± 1.4, significant t -test with p < 0.0001); (2) distinct shifts in chlorophyll vs. salinity, with higher chlorophyll concentrations shifting toward freshwater; and (3) greater relative proportions of vascular plant carbon that also appears less degraded (as indicated by lignin measurements) shifting from freshwater toward higher salinities. Lignin compositional data (syringyl:vanillyl and cinnamyl:vanillyl) suggest that increased lignin content in the more saline samples could be derived from wetland materials, while a two-endmember mixing model indicates that a significant portion of the particulate organic carbon (POC) in the western sites (50–60% as an upper bound, 13–15% as a lower bound) could be wetland-derived. This has potential implications for the lower food web, given recent work that demonstrates selective feeding by copepods on wetland detrital material in the northern SFBE. The latter has ramifications for proposed wetland restoration within the SFBE and Sacramento River/San Joaquin River Delta system, namely, that restored wetlands could confer important benefits toward the food web. Equally important is to prioritize continued monitoring of particulate organic matter cycling in the SFBE system to make sure that changing conditions are accounted for in any management decision.

California↗

USGS2023

Influence of increased freshwater inflow on nitrogen and phosphorus budgets in a dynamic subtropical estuary, Barataria Basin, Louisiana

Coastal Louisiana is currently experiencing high rates of wetland loss and large-scale ecosystem restoration is being implemented. One of the largest and most novel restoration projects is a controlled sediment diversion, proposed to rebuild and sustain wetlands by diverting sediment- and nutrient-rich water from the Mississippi River. However, the impact of this proposed sediment diversion on the nutrient budget of the receiving basin is largely unknown. A water quality model was developed to investigate the impact of the planned Mid-Barataria Sediment Diversion on the nutrient budget of the Barataria Basin (herein referred to as ‘the Basin’). The model results indicate that the planned diversion will increase TN and TP pools by about 38% and 17%, respectively, even with TN and TP loadings that increase by >300%. Water quality model results suggest that the increase of nutrients in the basin will be mitigated by increased advection transport (i.e., decreased residence time from ~170 days to ~40 days, leading to greater flushing) and increased removal via assimilation, denitrification, and settling within the Basin. Advection transport resulted in higher TN removal in the Basin than other processes, such as uptake or denitrification. Approximately 25% of the additional TN loading and 30% of the additional TP loading were processed within the Basin through the assimilation of phytoplankton and wetland vegetation, denitrification, and burial in the sediment/soils. These nutrient budgets help to better understand how the planned large-scale sediment diversion project may change the future ecological conditions within the estuaries of coastal Louisiana and near-shore northern Gulf of Mexico.

Louisiana↗

USGS2018

Fish misidentification and potential implications to monitoring within the San Francisco Estuary, California

Fish monitoring programs often rely on the collection, species identification, and counting of individual fish over time to inform natural resource management decisions. Thus, the utility of the data used to inform these decisions can be negatively affected by species misidentification. Fish species misidentification bias can be minimized by confirming identification using genetic techniques, training observers, or adjusting monitoring data using estimates of incomplete detection and false-positive misidentification. Despite the existence of well-established fish identification training and quality control programs, there is considerable uncertainty about fish species false-positive misidentification rates and the effectiveness of fish identification training programs within the San Francisco Estuary. We evaluated the misidentification of fish species among Delta Juvenile Fish Monitoring Program observers by conducting five fish identification exams under controlled conditions at the Lodi Fish and Wildlife Office in Lodi, California, between 2012 and 2014. To assess the variability in false-positive misidentification, we fitted data to species and observer characteristics using hierarchical logistic regression. We found that fish species misidentification was fairly common, averaging 17% among 155 test specimens and 32 observers. False-positive misidentification varied considerably among species and was negatively related to fish size, the abundance of the species within monitoring samples, and observer experience. In addition, observers who were not formally trained or used as full-time observers were, on average, 6.0 times more likely to falsely identify a species. However, false-positive misidentification rates among observers and specimens still varied considerably after controlling for observer experience and training, and species and size, respectively. Our results could be used to improve fish identification training and testing, increase the accuracy of fish occupancy or abundance estimation, and justify the allocation of resources to continually use and formally train full-time observers within long-term monitoring programs operating in the system.

California↗

USGS2022

Round Goby captured in a North American estuary: Status and implications in the Hudson River, New York

Round Goby Neogobius melanostomus , a nonnative fish species to North America, has been rapidly expanding through the connected waterways of the Laurentian Great Lakes. Herein, we document the eastward and southern expansion of Round Goby into the Hudson River, New York, an iconic coastal estuary that drains to Long Island Sound and the Atlantic seaboard. In summer and early fall 2021, routine fish monitoring conducted by the New York State Department of Environmental Conservation documented a population of Round Goby in the tidal portion of the Hudson River. Over the course of monitoring in 2021, personnel collected 112 Round Goby between Albany, New York, and Poughkeepsie, New York, with the southernmost collection occurring approximately 140 km downstream of invasion front as reported in 2020 within the New York State Canal System. Although Round Goby previously colonized large rivers and streams in the Great Lakes watershed, there is little information about the invasion success and ecological impacts of Round Goby in estuarine environments in North America. We discuss the distribution and biological characteristics of the Hudson River Round Goby population as well as the potential ecological implications and areas of future research and monitoring for this range expansion.

New York↗

USGS2003

Metal uptake by phytoplankton during a bloom in South San Francisco Bay: Implications for metal cycling in estuaries

The 1994 spring phytoplankton bloom in South San Francisco Bay caused substantial reductions in concentrations of dissolved Cd, Ni, and Zn, but not Cu. We estimate that the equivalent of ~60% of the total annual input of Cd, Ni, and Zn from local waste‐water treatment plants is cycled through the phytoplankton in South Bay. The results suggest that processes that affect phytoplankton bloom frequency or intensity in estuaries (e.g. nutrient enrichment) may also affect metal trapping. The bloom was characterized by hydrographic surveys conducted at weekly intervals for 9 weeks. Metal samples were collected from the water column on three occasions, timed to bracket the period when the bloom was predicted. Factors that might confound observations of biological influences, such as freshwater inputs, were relatively constant during the study. Before the bloom, concentrations of dissolved Cd were 0.81 ± 0.02 nmol kg −1 , Zn concentrations were 19.8 ± 1.5 nmol kg −1 , Ni were 42 ± 1.4 nmol kg −1 , and Cu were 37 ± 1.4 nmol kg −1 . These values are elevated relative to riverine and coastal end‐members, reflecting inputs from wastewater and(or) sediments. At the height of the bloom, dissolved Zn, Cd, and Ni were reduced to 19, 50, and 75% of their prebloom concentrations, respectively. Dissolved Cu concentrations increased 20%. The mass of Cd taken up by phytoplankton was similar to the mass of Cd removed from solution if particle settling was considered, and Cd concentrations estimated in phytoplankton were higher than concentrations in suspended particulate material (SPM). Particulate concentrations of Zn and Ni during the bloom appeared to be dominated by the influence of changes in resuspension of Zn and Ni‐rich sediments.

California↗

USGS1978

Rehabilitation of birds oiled on two mid-Atlantic estuaries

An estimated 52,500 birds died as a result of 7 major oil spills on 2 mid-Atlantic estuaries between 1973-78. Ruddy ducks ( Oxyura jamaicensis ) constituted 98% of 12,500 birds known to have died from 5 spills on the Delaware River. Seventy-six percent of 40,000 dead birds from 2 Chesapeake Bay spills were horned grebes ( Podiceps auritus ) and oldsquaw ( Clangula hyemalis ). Oiled waterfowl that were captured alive (6% of the estimated mortality) were cleaned with a variety of cleaning agents and techniques. High mortality occurred during and shortly after cleaning, and was apparently due to hypothermia and to toxicity of solvent cleaning agents. Eighty-two percent of the 3,113 birds that were cleaned died prior to or at time of release. The fate of the remaining 18% is unknown. Petroleum solvents used as cleaning agents were toxic to the birds. Most detergents left a surfactant (wetting agent) on the feathers which resulted in subsequent wetting of released birds. Although rehabilitation techniques have improved in recent years, high bird mortality can be expected following future oil spills.

Chesapeake Bay, Delaware River↗

USGS1989

Effects of runoff changes and sea level rise on salinity in the Delaware River estuary

The objective of this study is to investigate changes in the spatial distribution of salt in the Delaware Estuary resulting from climate induced changes in freshwater inflows and in the position of mean sea level. The approach adopted for this study is composed of two parts: An analysis of existing physical data in order to derive a basic understanding of the salt dynamics, and numerical simulation of future conditions based upon this analysis.

Conference Paper↗

USGS1989

Implementation of a hydrodynamic model for the upper Potomac Estuary

A vertically integrated, two-dimensional hydrodynamic/transport model has been implemented for the upper extent of the Potomac Estuary between Indian Head and Morgantown, Md. The model computes water-surface elevations, flow velocities, and time-varying constituent concentrations by numerically integrating finite-difference forms of the equations of mass and momentum conservation in conjunction with transport equations for heat, salt, and dissolved constituents. Previous, preliminary calibration efforts have been extended and validity of the model implementation improved. Field-measured and model-computed water levels compare within ?? 2 cm and maximum computed flood and ebb flow discharges are within 3% of measured values. Indications are that further improvements can be effected.

Conference Paper↗

USGS1991

Tidal stirring and phytoplankton bloom dynamics in an estuary

In South San Francisco Bay, estuarine phytoplankton biomass fluctuates at the time scale of days to weeks; much of this variability is associated with fluctuations in tidal energy. During the spring seasons of every year from 1980-1990, episodic blooms occurred in which phytoplankton biomass rose from a baseline of 2-4mg chlorophyll a m-3, peaked at 20-40 chlorophyll a m-3, then returned to baseline values, all within several weeks. Each episode of biomass increase occurred during neap tides, and each bloom decline coincided with spring tides. This suggests that daily variations in the rate of vertical mixing by tidal stirring might control phytoplankton bloom dynamics in some estuaries. Simulation experiments with a numerical model of phytoplankton population dynamics support this hypothesis. -from Author

Journal of Marine Research↗

USGS1997

Relationships between salt marsh loss and dredged canals in three Louisiana Estuaries

Coastal land loss rates were quantified for 27 salt marshes in three estuaries of the Louisiana Mississippi Deltaic plain: Barataria, Terrebonne and St. Bernard. The sites ranged from 23 ha to 908 ha and the total area of all sites was 6,367 ha. Two methods were used to calculate open water and canal density in each of five years: (1) a Geographic Information System for 1956 and 1978, and, (2) a point grid method for 1974, 1988, and 1990. A General Linear Model explained 79% of the variance (R2 = 0.79; P ??? 0.95) among basins for all years and provided an estimate of the impacts of canals in each basin. The land loss rates, virtually all occurring as wetland to open water conversions, were different in each basin. The 'background' land loss rates from 1956 to 1990 (exclusive of the direct or indirect effects of canals; %/yr; ?? + 1 Std. Dev.) for each basin were estimated to be: Barataria: 0.71 ?? 0.12, Terrebonne 0.47 ?? 0.09, and St. Bernard 0.08 ?? 0.14. Canals were equally and directly correlated with landloss in each basin. There was 2.85 ha of open water formed with each ha of canal dredged (inclusive of the canal area) and an additional 1 ha wetland converted to spoil bank vegetation. Additional losses may occur if loss rates continue for periods longer than the mapping intervals. There are documented causal mechanisms involving wetland hydrologic changes that can explain these wetland losses.

Journal of Coastal Research↗

USGS1998

Tidally oriented vertical migration and position maintenance of zooplankton in a temperate estuary

In many estuaries, maxima in turbidity and abundance of several common species of zooplankton occur in the low salinity zone (LSZ) in the range of 0.5-6 practical salinity units (psu). Analysis of zooplankton abundance from monitoring in 1972-1987 revealed that historical maxima in abundance of the copepod Eurytemora affinis and the mysid Neomysis mercedis, and in turbidity as determined from Secchi disk data, were close to the estimated position of 2 psu bottom salinity. The copepod Sinocalanus doerrii had a maximum slightly landward of that of E. affinis. After 1987 these maxima decreased and shifted to a lower salinity, presumably because of the effects of grazing by the introduced clam Potamocorbula amurensis. At the same time, the copepod Pseudodiaptomus forbesi, the mysid Acanthomysis sp., and amphipods became abundant with peaks at salinity around 0.2-0.5 psu. Plausible mechanisms for maintenance of these persistent abundance peaks include interactions between variation in flow and abundance, either in the vertical or horizontal plane, or higher net population growth rate in the peaks than seaward of the peaks. In spring of 1994, a dry year, we sampled in and near the LSZ using a Lagrangian sampling scheme to follow selected isohalines while sampling over several complete tidal cycles. Acoustic Doppler current profilers were used to provide detailed velocity distributions to enable us to estimate longitudinal fluxes of organisms. Stratification was weak and gravitational circulation nearly absent in the LSZ. All of the common species of zooplankton migrated vertically in response to the tides, with abundance higher in the water column on the flood than on the ebb. Migration of mysids and amphipods was sufficient to override net seaward flow to produce a net landward flux of organisms. Migration of copepods, however, was insufficient to reverse or even greatly diminish the net seaward flux of organisms, implying alternative mechanisms of position maintenance.

Limnology and Oceanography↗

USGS2004

Effect of outflow on spring and summertime distribution and abundance of larval and juvenile fishes in the upper San Francisco Estuary

We analyzed data on spring and summertime larval and juvenile fish distribution and abundance in the upper San Francisco Estuary (SFE), California between 1995 and 2001. The upper SFE includes the tidal freshwater areas of the Sacramento-San Joaquin Delta downstream to the euryhaline environment of San Pablo Bay. The sampling period included years with a variety of outflow conditions. Fifty taxa were collected using a larval tow net. Two common native species, delta smelt Hypomesus transpacifucus and longfin smelt Spirinchus thaleichthys, and four common alien taxa, striped bass Morone saxatilis, threadfin shad Dorosoma petenense, gobies of the genus Tridentiger, and yellowfin goby Acanthogobins flavimanus, were selected for detailed analysis. Outflow conditions had a strong influence on the geographic distribution of most of the species, but distribution with respect to the 2 psu isohaline (X2) was not affected. The distribution patterns of delta smelt, longfin smelt, and striped bass were consistent with larvae moving from upstream freshwater spawning areas to down-stream estuarine rearing areas. There were no obvious relationships of outflow with annual abundance indices. Our results support the idea of using X2 as an organizing principle in understanding the ecology of larval fishes in the upper SFE. Additional years of sampling will likely lead to additional insights into the early life history of upper SFE fishes. ?? Copyright by the American Fisheries Society 2004.

American Fisheries Society Symposium↗

USGS2009

Use of non-natal estuaries by migratory striped bass (Morone saxatilis) in summer

For most migratory fish, little is known about the location and size of foraging areas or how long individuals remain in foraging areas, even though these attributes may affect their growth, survival, and impact on local prey. We tested whether striped bass (Morone saxatilis Walbaum), found in Massachusetts in summer, were migratory, how long they stayed in non-natal estuaries, whether observed spatial patterns differed from random model predictions, whether fish returned to the same area across multiple years, and whether fishing effort could explain recapture patterns. Anchor tags were attached to striped bass that were caught and released in Massachusetts in 1999 and 2000, and recaptured between 1999 and 2007. In fall, tagged striped bass were caught south of where they were released in summer, confirming that fish were coastal migrants. In the first summer, 77% and 100% of the recaptured fish in the Great Marsh and along the Massachusetts coast, respectively, were caught in the same place where they were released. About two thirds of all fish recaptured near where they were released were caught 2-7 years after tagging. Our study shows that smaller (400-500 mm total length) striped bass migrate hundreds of kilometers along the Atlantic Ocean coast, cease their mobile lifestyle in summer when they use a relatively localized area for foraging (<20 km 2 ), and return to these same foraging areas in subsequent years.

Fishery Bulletin↗

USGS2009

Regional classification of Pacific Northwest estuaries by wetland and land cover patterns

Increased anthropogenic nutrient loading and the subsequent eutrophication of coastal ecosystems is a growing ecological and economic problem both in the United States and globally. Eutrophication can result in a range of ecological impacts including hypoxic conditions, fish kills, loss of submerged aquatic vegetation (SAV), degraded benthic conditions, harmful algal blooms, and detrimental increases in benthic macroalgae. The nature and severity of the impacts vary with the level of nutrient loading as well as with the estuary type and regional drivers.

Report↗

USGS2013

Storm surges and climate change implications for tidal marshes: Insight from the San Francisco Bay Estuary, California, USA

Tidal marshes are dynamic ecosystems, which are influenced by oceanic and freshwater processes and daily changes in sea level. Projected sea-level rise and changes in storm frequency and intensity will affect tidal marshes by altering suspended sediment supply, plant communities, and the inundation duration and depth of the marsh platform. The objective of this research was to evaluate if regional weather conditions resulting in low-pressure storms changed tidal conditions locally within three tidal marshes. We hypothesized that regional storms will increase sea level heights locally, resulting in increased inundation of the tidal marsh platform and plant communities. Using site-level measurements of elevation, plant communities, and water levels, we present results from two storm events in 2010 and 2011 from the San Francisco Bay Estuary (SFBE), California, USA. The January 2010 storm had the lowest recorded sea level pressure in the last 30 years for this region. During the storm episodes, the duration of tidal marsh inundation was 1.8 and 3.1 times greater than average for that time of year, respectively. At peak storm surges, over 65% in 2010 and 93% in 2011 of the plant community was under water. We also discuss the implications of these types of storms and projected sea-level rise on the structure and function of the tidal marshes and how that will impact the hydro-geomorphic processes and marsh biotic communities.

California↗

USGS1984

Finite element solution methods for circulation in estuaries

In this paper, the shallow water equations are used to approximate the depth-mean circulation in estuaries. The time scales of the motions can be conveniently divided into three ranges: 1) low-frequency (residual) variations with periods of two days or longer, 2) tidal-frequency variations, and 3) high-frequency variations with periods of an hour or shorter. The emphasis here will be on the tidal-period variations that are characterized by line spectra and thus allow a harmonic decomposition of the governing equations.

Book chapter↗

USGS2009

How humans and nature have shaped the San Francisco Estuary since the Gold Rush

The San Francisco Estuary has undergone dramatic changes since the Gold Rush, as both natural forces and human activities have added and removed massive quantities of sediment, primarily sand and mud. A long-term perspective of sediment movement and patterns of sediment deposition and erosion is vital for effective management of wetlands, sediment contamination, dredging, mining, and other phenomena. Quantitative analysis of historical depth surveys and changes between surveys provides this perspective.

Report↗

USGS1997

Status, trends, and changes in freshwater inflows to bay systems in the Corpus Christi Bay National Estuary Program study area

This report presents the results of a study to quantify current (1983–93) mean freshwater inflows to the six bay systems (open water and wetlands) in the Corpus Christi Bay National Estuary Program study area, to test for historical temporal trends in inflows, and to quantify historical and projected changes in inflows. The report also addresses the adequacy of existing data to estimate freshwater inflows. The six bay systems are the St. Charles, Copano, Redfish, Nueces and Corpus Christi, upper Laguna Madre, and Baffin. Each bay system has one or more adjacent contributing watersheds, for a total of 13 watersheds for purposes of this study, that together comprise about 6,000 square miles. All freshwater runoff to each bay system except the Nueces and Corpus Christi originates in adjacent watersheds. Freshwater that enters the Nueces and Corpus Christi Bay system is a combination of water that originates in the adjacent contributing watersheds and water that originates in the large regional watershed of the Nueces River (greater Nueces River Basin) upstream of the adjacent contributing watersheds. The watershed simulation model Hydrologic Simulation Program—Fortran (HSPF) was used to generate simulated flow (runoff) from the 13 watersheds to the six bay systems because adequate gaged streamflow data from which to estimate freshwater inflows are not available; only about 23 percent of the adjacent contributing watershed area is gaged. The model was calibrated for the gaged parts of three watersheds—that is, selected input parameters (meteorologic and hydrologic properties and conditions) that control runoff were adjusted in a series of simulations until an adequate match between model-generated flows and a set (time series) of gaged flows was achieved. The primary model input is rainfall and evaporation data and the model output is a time series of runoff volumes. After calibration, simulations driven by daily rainfall for a 26-year period (1968–93) were done for the 13 watersheds to obtain runoff under current (1983–93), predevelopment (pre-1940 streamflow and pre-urbanization), and future (2010) land-use conditions for estimating freshwater inflows and for comparing runoff under the three land-use conditions; and to obtain time series of runoff from which to estimate time series of freshwater inflows for trend analysis.

Report↗