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At least 451 records · Page 25Linked to original sources
USGS2017

2010-2015 Juvenile fish ecology in the Nisqually River Delta and Nisqually Reach Aquatic Reserve

The return of tidal inundation to over 750 acres of the U. S. Fish and Wildlife Service Billy Frank Jr. Nisqually National Wildlife Refuge (NNWR) in fall of 2009 was the crowning moment in the effort to protect and restore the Nisqually Delta. The Nisqually NWR project complemented three earlier restoration projects completed by the Nisqually Indian Tribe (Tribe) on tribal property to restore over 900 acres of the estuary, representing the largest estuary restoration project in the Pacific Northwest and one of the most significant advances to date towards the recovery of Puget Sound (USFWS 2005). In 2011 the Washington Department of Natural Resources (WADNR established the over 14000 acre Nisqually Reach Aquatic Reserve (Reserve), complementing the protection and restoration successes in the Nisqually Delta. The Reserve includes all state-owned aquatic lands around Anderson, Ketron and Eagle islands and part of McNeil Island (Figure 1, WDNR 2011). The Reserve also includes a diverse assemblage of nearshore and offshore habitats important to resident and migratory fish including federal endangered species act listed fish like Chinook salmon (Oncorynchus tshawytscha) and steelhead (O. mykiss). Studies in the Nisqually Estuary (Ellings and Hodgson 2007, David et al. 2014, Ellings et al. 2016) and South Puget Sound (Duffy 2003) have summarized fish use of the area. However, the fish ecology of the reserve had not been systematically surveyed. The Tribe, U.S. Geological Survey (USGS), NNWR, Nisqually River Foundation (NRF), and others are currently conducting a multi-year, interdisciplinary, hypothesis-based research and monitoring study investigating the impact of delta restoration on estuarine processes, habitat structures, and functions. Our interdisciplinary monitoring framework enables us to link key estuarine processes with habitat development and biological response at multiple scales across the restored footprint, reference marshes, and throughout the Nisqually Reach. Key research components include hydrology and sediment regime, channel and marsh topography and development, vegetation colonization, and invertebrate, bird, and fish abundance, habitat use, and foraging ecology. After the Reserve was established, the WDNR and the research partnership led by the Tribe expanded the existing delta fish ecology assessment to include sampling stations throughout the Reserve. The results of the Reserve fish ecology assessment provide a unique regional analysis of fish ecology from the Nisqually River to McNeil Island.

Salmon Recovery Program Technical Report↗
USGS2003

Application of adaptive cluster sampling to low-density populations of freshwater mussels

Freshwater mussels appear to be promising candidates for adaptive cluster sampling because they are benthic macroinvertebrates that cluster spatially and are frequently found at low densities. We applied adaptive cluster sampling to estimate density of freshwater mussels at 24 sites along the Cacapon River, WV, where a preliminary timed search indicated that mussels were present at low density. Adaptive cluster sampling increased yield of individual mussels and detection of uncommon species; however, it did not improve precision of density estimates. Because finding uncommon species, collecting individuals of those species, and estimating their densities are important conservation activities, additional research is warranted on application of adaptive cluster sampling to freshwater mussels. However, at this time we do not recommend routine application of adaptive cluster sampling to freshwater mussel populations. The ultimate, and currently unanswered, question is how to tell when adaptive cluster sampling should be used, i.e., when is a population sufficiently rare and clustered for adaptive cluster sampling to be efficient and practical? A cost-effective procedure needs to be developed to identify biological populations for which adaptive cluster sampling is appropriate.

Environmental and Ecological Statistics↗
USGS2020

Mariana serpentinite mud volcanism exhumes subducted seamount materials: Implications for the origin of life

The subduction of seamounts and ridge features at convergent plate boundaries plays an important role in the deformation of the overriding plate and influences geochemical cycling and associated biological processes. Active serpentinization of forearc mantle and serpentinite mud volcanism on the Mariana forearc (between the trench and active volcanic arc) provides windows on subduction processes. Here, we present (1) the first observation of an extensive exposure of an undeformed Cretaceous seamount currently being subducted at the Mariana Trench inner slope; (2) vertical deformation of the forearc region related to subduction of Pacific Plate seamounts and thickened crust; (3) recovered Ocean Drilling Program and International Ocean Discovery Program cores of serpentinite mudflows that confirm exhumation of various Pacific Plate lithologies, including subducted reef limestone; (4) petrologic, geochemical and paleontological data from the cores that show that Pacific Plate seamount exhumation covers greater spatial and temporal extents; (5) the inference that microbial communities associated with serpentinite mud volcanism may also be exhumed from the subducted plate seafloor and/or seamounts; and (6) the implications for effects of these processes with regard to evolution of life.

Philosophical Transactions of the Royal Society A:↗
USGS1981

Water Resources Research October 1, 1979 - September 30, 1980: Summary statements of research activities by the Water Resources Division

Research in the WRD had its beginnings in the late 1950's when the "core research" line item was added to the Congressional budget. Since this time the Federal program has grown from a "basic sciences" program to one that includes a broad spectrum of basic and applied scientific investigations. Water resources research in WRD includes the study of water in all its phases and uses the basic sciences of mathematics, chemistry, physics, biology, geology and engineering to gain a fundamental understanding of the processes that affect the movement of water and its chemical constituents through hydrologic systems. The basic knowledge and methodologies derived from water resources research are applicable not only to the solution of current problems associated with the Nation's water resources, but also to anticipated hydrologic issues.

Report↗
USGS2007

Monitoring Ground-Water Quality in Coastal Ecosystems

INTRODUCTION The Cape Cod National Seashore (CACO) extends along more than 70 km of Atlantic Ocean open-beach coastline and includes three large saltwater bays - Wellfleet Harbor, Nauset Marsh, and Pleasant Bay (fig. 1). CACO encompasses about 18,000 ha of uplands, lakes, wetlands, and tidal lands (Godfrey and others, 1999) including most habitats typical of the sandy coast in National seashores and parks extending southward from Massachusetts to Florida. In 1995, CACO was selected by the National Park Service (NPS) as a prototype park typifying the Atlantic and Gulf Coast biogeographic region for long-term coastal ecosystem monitoring. The U.S. Geological Survey (USGS) is currently (2007) assisting the NPS in the development of protocols for a Long-Term Coastal Ecosystem Monitoring Program at the CACO in Massachusetts. The overall purpose of the monitoring program is to characterize both natural and human-induced change in the biological resources of the CACO, over a time scale of decades, in the context of a changing global ecosystem.

Open-File Report↗
USGS2015

Activity-specific ecological niche models for planning reintroductions of California condors (Gymnogyps californianus)

Ecological niche models can be a useful tool to identify candidate reintroduction sites for endangered species but have been infrequently used for this purpose. In this paper, we (1) develop activity-specific ecological niche models (nesting, roosting, and feeding) for the critically endangered California condor ( Gymnogyps californianus ) to aid in reintroduction planning in California, Oregon, and Washington, USA, (2) test the accuracy of these models using empirical data withheld from model development, and (3) integrate model results with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability. Our approach, which disentangles niche models into activity-specific components, has applications for other species where it is routinely assumed (often incorrectly) that individuals fulfill all requirements for life within a single environmental space. Ecological niche models conformed to our understanding of California condor ecology, had good predictive performance when tested with data withheld from model development, and aided in the identification of several candidate reintroduction areas outside of the current distribution of the species. Our results suggest there are large unoccupied regions of the California condor’s historical range that have retained ecological features similar to currently occupied habitats, and thus could be considered for future reintroduction efforts. Combining our activity-specific ENMs with ground reconnaissance and information on other threat factors that could not be directly incorporated into empirical ENMs will ultimately improve our ability to select successful reintroduction sites for the California condor.

California, Oregon, Washington↗
USGS1992

Physical oceanographic investigation of Massachusetts and Cape Cod Bays

This physical oceanographic study of the Massachusetts Bays (fig. 1) was designed to provide for the first time a bay-wide description of the circulation and mixing processes on a seasonal basis. Most of the measurements were conducted between April 1990 and June 1991 and consisted of moored observations to study the current flow patterns (fig. 2), hydrographic surveys to document the changes in water properties (fig. 3), high-resolution surveys of velocity and water properties to provide information on the spatial variability of the flow, drifter deployments to measure the currents, and acquisition of satellite images to provide a bay-wide picture of the surface temperature and its spatial variability. A longterm objective of the Massachusetts Bays program is to develop an understanding of the transport of water, dissolved substances and particles throughout the bays. Because horizontal and vertical transport is important to biological, chemical, and geological processes in Massachusetts and Cape Cod Bays, this physical oceanographic study will have broad application and will improve the ability to manage and monitor the water and sediment quality of the Bays. Key results are: There is a marked seasonal variation in stratification in the bays, from well mixed conditions during the winter to strong stratification in the summertime. The stratification acts as a partial barrier to exchange between the surface waters and the deeper waters and causes the motion of the surface waters to be decoupled from the more sluggish flow of the deep waters. During much of the year, there is weak but persistent counterclockwise flow around the bays, made up of southwesterly flow past Cape Ann, southward flow along the western shore, and outflow north of Race Point. The data suggest that this residual flow pattern reverses in fall. Fluctuations caused by wind and density variations are typically larger than the long-term mean. With the exception of western Massachusetts Bay, flushing of the Bays is largely the result of the mean throughflow. Residence time estimates of the surface waters range from 20-45 days. The deeper water has a longer residence time, but its value is difficult to estimate. There is evidence that the deep waters in Stellwagen Basin are not renewed between the onset of stratification and the fall cooling period. Current measurements made near the new outfall site in western Massachusetts Bay suggest that water and material discharged there are not swept away in a consistent direction by a well-defined steady current but are mixed and transported by a variety of processes, including the action of tides, winds, and river inflow. One-day particle excursions are typically less than 10 km. The outfall is apparently located in a region to the west of the basin-wide residual flow pattern. Observations in western Massachusetts Bay, near the location of the future Boston sewage outfall, show that the surficial sediments are episodically resuspended from the seafloor during storms. The observations suggest onshore transport of suspended material during tranquil periods and episodic offshore and southerly alongshore transport of resuspended sediments during storms. The spatial complexity of the flow in the Massachusetts Bays is typical of nearshore areas that have irregular coastal shorelines and topography and currents that are forced locally by wind and river runoff as well as by the flow in adjacent regions. Numerical models are providing a mechanism to interpret the complex spatial flow patterns that cannot be completely resolved by field observations and to investigate key physical processes that control the physics of water and particle transport.

Massachussetts↗
USGS2016

Fluctuating water depths affect American alligator ( Alligator mississippiensis ) body condition in the Everglades, Florida, USA

Successful restoration of wetland ecosystems requires knowledge of wetland hydrologic patterns and an understanding of how those patterns affect wetland plant and animal populations.Within the Everglades, Florida, USA restoration, an applied science strategy including conceptual ecological models linking drivers to indicators is being used to organize current scientific understanding to support restoration efforts. A key driver of the ecosystem affecting the distribution and abundance of organisms is the timing, distribution, and volume of water flows that result in water depth patterns across the landscape. American alligators (Alligator mississippiensis) are one of the ecological indicators being used to assess Everglades restoration because they are a keystone species and integrate biological impacts of hydrological operations through all life stages. Alligator body condition (the relative fatness of an animal) is one of the metrics being used and targets have been set to allow us to track progress. We examined trends in alligator body condition using Fulton’s K over a 15 year period (2000–2014) at seven different wetland areas within the Everglades ecosystem, assessed patterns and trends relative to restoration targets, and related those trends to hydrologic variables. We developed a series of 17 a priori hypotheses that we tested with an information theoretic approach to identify which hydrologic factors affect alligator body condition. Alligator body condition was highest throughout the Everglades during the early 2000s and is approximately 5–10% lower now (2014). Values have varied by year, area, and hydrology. Body condition was positively correlated with range in water depth and fall water depth. Our top model was the “Current” model and included variables that describe current year hydrology (spring depth, fall depth, hydroperiod, range, interaction of range and fall depth, interaction of range and hydroperiod). Across all models, interaction between range and fall water depth was the most important variable (relative weight of 1.0) followed by spring and fall water depths (0.99), range (0.96), hydroperiod (0.95) and interaction between range and hydroperiod (0.95). Our work provides additional evidence that restoring a greater range in annual water depths is important for improvement of alligator body condition and ecosystem function. This information can be incorporated into both planning and operations to assist in reaching Everglades restoration goals.

Florida↗
USGS2018

Critical review: Grand challenges in assessing the adverse effects of contaminants of emerging concern on aquatic food webs

Much progress has been made in the past few decades in understanding the sources, transport, fate, and biological effects of contaminants of emerging concern (CECs) in aquatic ecosystems. Despite these advancements, significant obstacles still prevent comprehensive assessments of the environmental risks associated with the presence of CECs. Many of these obstacles center around the extrapolation of effects of single chemicals observed in the laboratory or effects found in individual organisms or species in the field to impacts of multiple stressors on aquatic food webs. In the present review, we identify 5 challenges that must be addressed to promote studies of CECs from singular exposure events to multispecies aquatic food web interactions. There needs to be: 1) more detailed information on the complexity of mixtures of CECs in the aquatic environment, 2) a greater understanding of the sublethal effects of CECs on a wide range of aquatic organisms, 3) an ascertaining of the biological consequences of variable duration CEC exposures within and across generations in aquatic species, 4) a linkage of multiple stressors with CEC exposure in aquatic systems, and 5) a documenting of the trophic consequences of CEC exposure across aquatic food webs. We examine the current literature to show how these challenges can be addressed to fill knowledge gaps.

Environmental Toxicology and Chemistry↗
USGS2018

Understanding the influence of nutrients on stream ecosystems in agricultural landscapes

Sustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term economic, social, and environmental benefits that make a difference to the lives of the almost 400 million people projected to live in the United States by 2050. In 1991, Congress established the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) to address where, when, why, and how the Nation’s water quality has changed, or is likely to change in the future, in response to human activities and natural factors. Since then, NAWQA has been a leading source of scientific data and knowledge used by national, regional, State, and local agencies to develop science-based policies and management strategies to improve and protect water resources used for drinking water, recreation, irrigation, energy development, and ecosystem needs ( https://water.usgs.gov/nawqa/applications/ ). Plans for the third decade of NAWQA (2013–23) address priority water-quality issues and science needs identified by NAWQA stakeholders, such as the Advisory Committee on Water Information and the National Research Council, and are designed to meet increasing challenges related to population growth, increasing needs for clean water, and changing land-use and weather patterns. Excess nutrients are a pervasive problem of streams, lakes, and coastal waters. The current report, “The Quality of Our Nation’s Waters—Understanding the Effects of Nutrients on Stream Ecosystems in Agricultural Landscapes,” presents a summary of results from USGS investigations conducted from 2003 to 2011 on processes that influence nutrients and how nutrient enrichment can alter biological components of agricultural streams. This study included collecting data from 232 sites distributed among eight study areas. This report summarizes findings on processes that influence nutrients and how nutrient enrichment can alter biological communities in agricultural streams. These findings are relevant to local, State, regional, and national decision-makers involved in efforts to (1) better understand the influence of nutrients on agricultural streams, (2) develop nutrient criteria for streams and rivers, (3) reduce nutrients to streams and downstream receiving waters, and (4) develop tools for tracking nutrient and biological conditions following nutrient reduction strategies. All NAWQA reports are available online at https://water.usgs.gov/nawqa/bib/ . We hope this publication will provide you with insights and information to meet your water-resource needs and will foster increased citizen awareness and involvement in the protection and restoration of our Nation’s waters. The information in this report is intended primarily for those interested or involved in resource management and protection, conservation, regulation, and policymaking at the regional and national levels.

Central Columbia-Yakima River Basins, Great River ↗
USGS2005

Visitor and community survey results for Kilauea Point National Wildlife Refuge and Lighthouse: Completion report

The U.S. Fish and Wildlife Service (USFWS) and the Central Federal Lands Highway Division of the Federal Highway Administration, U.S. Department of Transportation are currently pursuing the planning and potential design of an alternative transportation system (ATS) for Kilauea Point National Wildlife Refuge (Refuge or Kilauea Point NWR). The USFWS and CFLHD seek an alternative transportation solution that provides the highest quality visitor experience and is sensitive to biological and cultural resources and the needs of the local community. In planning the alternative transportation system, managers need to consider how an ATS would change factors such as visitor access, visitor experience, visitor willingness to pay, and visitor net economic benefits. The Policy Analysis and Science Assistance branch (PASA) at the U.S. Geological Survey Fort Collins Science Center is dedicated to studying relations between humans and the environment. The objective of PASA is to conduct studies to understand how humans are affected by environmental management decisions and how human activities impact use and conservation of natural resources.

Hawaii↗
USGS2011

Development and application of indices to assess the condition of benthic algal communities in U.S. streams and rivers

Multi-metric indices (MMIs) are a measure of a combination of characteristics of biological communities and are used as indicators of water quality and ecological health. Although MMIs for algal communities have been developed for specific regions of the United States, none of the indices have national applicability. The MMIs described in this report were developed by the National Water-Quality Assessment Program of the U.S. Geological Survey to assess the overall health of benthic algal communities in U.S. streams and rivers within five geographic regions that encompass the conterminous United States.The traditional procedure for developing MMIs (also referred to as indices of biological integrity) is to select individual metrics that, separately, can distinguish between undisturbed sites (selected for this study as reference sites) and predetermined disturbed sites. The metrics are then combined into a single index. In addition to traditional approaches for selecting individual metrics, the current study used stepwise logistic regressions to select sets of metrics that best predicted whether sites were in an undisturbed or a disturbed condition. Multi-metric indices and logistic regression models were developed for five regions of the United States using calibration datasets and were evaluated using independent validation datasets.

Open-File Report↗
USGS1980

Lateral trends and vertical sequences in estuarine sediments, Willapa Bay, Washington

Willapa Bay is a sizable estuary on the southern coast of Washington- Relatively unmodified in a geologic sense by human activity the bay provides an excellent example of modern depositional facies in an estuarine setting. Studies of these deposits indicate that consistent lateral trends exist in sediment texture and sedimentary structures. The texture changes from sandy at the mouth of the bay to muddy in its upper parts. In any part of the bay , sediment is coarsest in the channel bottoms, where lag deposits accumulate. The sediment tends to fine in an upslope direction and is finest in supratidal flat deposits of silt and clay. The nature of sedimentary structures depends on the combination of physical and biological processes and sediment textures. Bedforms exist wherever the bed is sandy. In the main tidal channels sandwaves and dunes up to 4 meters high occur. In tributary channels and at the margins of the main channel, at shallower depths and under less intense currents , the structures are generally less than a meter high. Current ripples occur in t he sandy bed of all of the tidal channels and in runoff channels cross the tidal flat. Symmetric long-crested ripples are produced by wave action over the sandy intertidal flat. Internal structures in the bay's sediment depend not only on the nature of the bedform but also on the rate of bioturbation relative to physical processes. Under fields of large sandwaves or dunes, medium- to large-scale tabular and trough crossbedding predominates. This crossbedding generally is unidirectional, reflecting the locally dominant current (ebb or flood). Ripple bedding predominates elsewhere in sandy sediment within the channels. Where sand transport is diminished, as on the floor of the upper tributary channels, bioturbation exceeds the rate of production of physical structures and bedding is destroyed. The depositional banks in such areas tend to be sites of rapid sediment accumulation and bedding in the form of interlayered sand (commonly ripple bedded) and mud persists. On intertidal flats the sediment accumulates slowly and bioturbation erases nearly all physical structures. Bedding is preserved only where deposition is locally rapid , as in topographic depressions or on the depositional banks of runoff channels, or where faunal activity is inhibited, as beneath mounds of blue-green algae. The rate of sedimentation is slower still on the supratidal flats, but the general paucity of faunal activity allows the preservation of thin alternations of fine sand , silt or clay. The lateral migration of the tidal channels produces vertical sequences in which topographically higher facies are superposed on one another. Near the mouth of the estuary the upward sequence: lag deposit — crossbedded sand — ripple or planar-bedded sand is typical. The crossbedding shows a general upward decrease in thickness and a progression from trough to tabular units. In the main tidal channel - in the central estuary and in sandy tributary channels, the typical vertical sequence resembles that near the mouth , with the exception that the sequence is capped by bioturbated sandy or muddy tide flat deposits. In the upper estuary , where muddy sediment predominates, a typical sequence shows the progression-. bioturbated lag deposit — gently dipping interlaminated sand and mud layers of the accretionary bank — bioturbated mud flat deposits — thinly laminated fine supratidal deposits.

Oregon, Washington↗
USGS2023

A comprehensive plan for in-water sea turtle data collection in the US Gulf of Mexico

The Deepwater Horizon Open Ocean Trustee Implementation Group (OO TIG) released a Final Open Ocean Restoration Plan 2 in 2019, which included a project titled Developing a Gulf-wide Comprehensive Plan for In-water Sea Turtle Data Collection. This document, A Comprehensive Plan for In-water Sea Turtle Data Collection in the US Gulf of Mexico (Plan), is the culmination of that OO TIG project. This Plan serves as the OO TIG project’s technical report as well as a framework for a biologically and statistically-sound plan to support coordinated in-water sea turtle data collection in the United States (US) Gulf of Mexico (GoM) to determine sea turtle abundance and population trends. The purpose of this Plan is to act as a guide for collecting biologically and statistically robust, in-water sea turtle data in a comprehensive, coordinated, and standardized fashion in the US GoM. Several sea turtle in-water monitoring efforts are underway in the GoM; however, additional coordination and standardization of these efforts will benefit current restoration and recovery objectives. These efforts will aid in restoration project design, assess long-term effectiveness of restoration activities, and create abundance and distribution baselines across the GoM. This Plan provides guidance for researchers investigating sea turtle abundance and demographic questions, as well as for management agencies and restoration planners. A Steering Committee (SC) was assembled to develop this Plan and to recommend a coordinated approach to the formulation of an improved understanding of sea turtle population baselines in the GoM, from which determination of large-scale population changes, effects of specific threats (e.g., oil spills, anthropogenic hazards), and effects of changes in ocean conditions (e.g., climate change) can later be evaluated. In crafting this guidance, the SC considered species distribution and life history characteristics, spatial and logistical considerations, level of effort required to detect trends, methods available and the pros and cons of each, associated assumptions and biases with suggested monitoring methods, and standardization of data collection. Given the current level of data available, the SC has recommended species monitoring in two main phases in neritic and oceanic waters, with additional recommended sampling for surface pelagic drift communities. The two phases in this Plan focus on 1) monitoring a limited number of sites in the first 5 to 8 years, followed by 2) a refined monitoring design. To support implementation of this Plan, the SC also considered broader programmatic needs, including supplemental data collection, program and data management, potential international partnerships, program expansion, and applications including future technology.

Alabama, Florida, Louisiana, Mississippi, Texas↗
USGS2002

Mexican native trouts: A review of their history and current systematic and conservation status

While biologists have been aware of the existence of native Mexican trouts for over a century, they have received little study. The few early studies that did much more than mention their existence began in the 1930s and continued into the early 1960s, focusing primarily on distributional surveys and taxonomic analyses. Starting in the 1980s the Baja California rainbow trout became the subject of more detailed studies, but very little remains known of mainland trouts of the Sierra Madre Occidental. We review earlier studies and report on our own collections and observations made between 1975 and 2000. We present newly discovered historical evidence that leads us to conclude that a "lost" cutthroat trout, a lineage not previously known from Mexico, was collected more than a century ago from headwaters of the Ri??o Conchos (a major tributary of the Rio Grande (= Ri??o Bravo)), a basin not previously considered to harbor a native trout. We review the last century of regional natural resource management and discuss our own observations of trout habitats. Impacts of logging, road building and overgrazing are widespread and expanding. Many streams suffer from heavy erosion, siltation and contamination, and though long-term hydrologic data are generally not available, there is evidence of decreased discharge in many streams. These problems appear related to region-wide land management practices as well as recent regional drought. Trout culture operations using exotic rainbow trout have rapidly proliferated throughout the region, threatening genetic introgression and/or competition with native forms and predation on them. Knowledge of distribution, abundance, relationships and taxonomy, not to mention ecology and population biology, of native trouts of the Sierra Madre Occidental remains inadequate. Vast areas of most mainland drainages are still unexplored by fish collectors, and even rudimentary information regarding basic biology, ecology and population structure of stocks remains lacking. Concentrated exploration, research and management of this long overlooked and undervalued resource are all urgently needed. The history of natural resources exploitation that placed so many native trouts of the western United States on threatened and endangered species lists is repeating itself in the Sierra Madre Occidental. Without concentrated action and development of region-wide socio-economic solutions for current, largely non-sustainable resource management practices, native Mexican trout gene pools will soon be in grave danger of extinction.

Reviews in Fish Biology and Fisheries↗
USGS2022

Site- and individual-level contaminations affect infection prevalence of an emerging infectious disease of amphibians

Emerging infectious disease outbreaks are one of multiple stressors responsible for amphibian declines globally. In the northeastern United States, ranaviral diseases are prevalent in amphibians and other ectothermic species, but there is still uncertainty as to whether their presence is leading to population level effects. Further, there is also uncertainty surrounding the potential interactions among disease infection prevalence in free-ranging animals and habitat degradation (co-occurrence of chemical stressors). The current study was designed to provide field-based estimates of the relationship between amphibian disease and chemical stressors. We visited 40 wetlands across three protected areas, estimated the prevalence of ranavirus among populations of larval wood frogs and spotted salamanders, and assessed chemical and biological stressors in wetland habitats and larval amphibians using a suite of selected bioassays, screening tools and chemical analyses. Estimated ranavirus occupancy varied among the three protected areas and ranged from 0.27 to 0.55 with considerable variation within each protected area. Of the stressors evaluated, ranavirus prevalence was strongly and positively related to concentrations of metalloestrogens (metals with the potential to bind to estrogen receptors) and total metals in wetland sediments and weakly and negatively related to total pesticide concentrations in larval amphibians. These results can be used by land managers to refine habitat assessments to include such environmental factors with the potential to influence disease susceptibility.

Maryland, Massachusetts↗
USGS2008

Determining annual suspended sediment and sediment-associated trace element and nutrient fluxes

Suspended sediment is a major factor in the biological and geochemical cycling of trace elements and nutrients in aquatic systems. The design of effective studies involving the collection, processing, and subsequent chemical analysis of suspended sediment requires a clear understanding of the problems associated with using this sample medium. This review summarizes the current state of knowledge relative to the various issues/problems associated with the collection of representative suspended sediment samples in fluvial systems. It also addresses issues associated with accurately determining the concentrations and fluxes of sediment-associated trace elements and nutrients.

Science of the Total Environment↗
USGS2025

Ice Age biogeography corresponds with current climate vulnerability of freshwater fishes

1. Both local environmental factors and historical biogeography shape ecological communities, but determining which historical biogeographical patterns correspond with contemporary climate vulnerability is an underused conservation method. The historical colonization patterns of freshwater fishes following the Pleistocene (“Ice Age”) glaciations offers an ideal model for comparing historical biogeography and climate-change vulnerability. 2. We used current thermal niches and future stream-temperature projections to estimate the climate vulnerability of 29 Great Plains and Rocky Mountain fishes that we classified as either early or late colonists of the region in the wake of glacial retreat (~19,000 years ago). 3. Ninety-three percent of the most vulnerable species were amongst the earliest colonists of the region and we consider them “postglacial-pioneer species”. Median predicted site loss (number of historically occupied sites predicted to become too warm by end-of-century) was 0% for late colonizing species and 33% for early colonizing species. 4. We provide empirical evidence that postglacial-pioneer fishes are uniquely vulnerable to climate change, and we suggest this may apply to many taxa from formerly glaciated regions. More broadly, we demonstrate that evaluating the relationship between current species-environment patterns and historical biogeography may be a fruitful avenue for future climate change and conservation research.

North America↗