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At least 451 records · Page 25Linked to original sources

USGS2021

Honey bee foraged pollen reveals temporal changes in pollen protein content and changes in forager choice for abundant versus high protein flowers

Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged-pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in flowering habitats (uncultivated floristically-rich areas and conservation program land) near these apiaries throughout the growing season. We used these data, along with data from the literature on plant pollen protein content, to determine if honey bees collected a greater proportion of pollen from plant species growing in higher abundance or from plant species that have higher protein content. Protein content in honey bee collected pollen decreased from July to September every year, and there were among-year differences in pollen protein, highlighting the temporal variation in protein collected by these insects. Pollen protein was spatially consistent and broad-scale land use categories were not correlated with pollen protein content. Rather, our findings suggest flowering habitats found across land use categories can support honey bee foraging, which may confound broader land use effects. In early July and in early September, colonies collected a greater proportion of pollen from plants that grew in greater abundance in flowering habitats, but from late July through August, a greater proportion of pollen was collected from high-protein taxa, regardless of abundance. This suggests different factors may influence pollen forager decision-making throughout the season as colony needs and/or available forage communities change. Insights into the role of plant abundance and protein content on foraging could deepen our understanding of honey bee foraging behavior and help to inform habitat restoration programs for improved honey bee nutrition outcomes.

Michigan↗

USGS2021

Is the grass always greener? Land surface phenology reveals differences in peak and season-long vegetation productivity responses to climate and management

Vegetation phenology—the seasonal timing and duration of vegetative phases—is controlled by spatiotemporally variable contributions of climatic and environmental factors plus additional potential influence from human management. We used land surface phenology derived from the Advanced Very High Resolution Radiometer and climate data to examine variability in vegetation productivity and phenological dates from 1989 to 2014 in the U.S. Northwestern Plains, a region with notable spatial heterogeneity in climate, vegetation, and land use. We first analyzed interannual trends in six phenological measures as a baseline. We then demonstrated how including annual-resolution predictors can provide more nuanced insights into measures of phenology between plant communities and across the ecoregion. Across the study area, higher annual precipitation increased both peak and season-long productivity. In contrast, higher mean annual temperatures tended to increase peak productivity but for the majority of the study area decreased season-long productivity. Annual precipitation and temperature had strong explanatory power for productivity-related phenology measures but predicted date-based measures poorly. We found that relationships between climate and phenology varied across the region and among plant communities and that factors such as recovery from disturbance and anthropogenic management also contributed in certain regions. In sum, phenological measures did not respond ubiquitously nor covary in their responses. Nonclimatic dynamics can decouple phenology from climate; therefore, analyses including only interannual trends should not assume climate alone drives patterns. For example, models of areas exhibiting greening or browning should account for climate, anthropogenic influence, and natural disturbances. Investigating multiple aspects of phenology to describe growing-season dynamics provides a richer understanding of spatiotemporal patterns that can be used for predicting ecosystem responses to future climates and land-use change. Such understanding allows for clearer interpretation of results for conservation, wildlife, and land management.

Ecology and Evolution↗

USGS2011

The distributions of one invasive and two native crayfishes in relation to coarse-scale natural and anthropogenic factors

1.&ensp;Native crayfishes are often extirpated from portions of their range because of interactions with invasive species, anthropogenic alterations to environmental conditions or a combination of these factors. Our goal was to identify coarse-scale natural and anthropogenic factors related to the current distributions of the invasive crayfish, Orconectes hylas , and two endemic crayfishes, Orconectes peruncus and Orconectes quadruncus in the St. Francis River drainage, Missouri, U.S.A. and to provide wider insights into the potential role of anthropogenic factors in facilitating species displacement. 2.&ensp;We used classification trees to model coarse-scale natural and anthropogenic environmental factors and their relation to the presence or absence of each species. Model results were then used to predict probability of presence for each species within each stream segment throughout the entire St. Francis River drainage. 3.&ensp;Factors related to geology and soils were the best predictors of species distributions. A dichotomy of these factors explained much of the discrete distributions of the two native species. Agricultural-related factors were identified as the most influential anthropogenic activity related to species distributions. All associations between the invasive species and anthropogenic factors were negative which suggested the invader was not likely to establish in heavily impacted areas. Overall, our models had high correct classification rates, and we were able to reliably predict the presence of the invader in the invaded drainage. 4.&ensp;Given the negative associations of the invader with anthropogenic alterations at a coarse spatial scale, we believe other mechanisms are likely to be responsible for the widespread displacement of the two native species. These findings can be used to assist in conservation activities such as creation of refugia for native species and may direct future research to identify the mechanism(s) of species displacement.

Missouri↗

USGS2024

Variability in coastal habitat available for Longfin Smelt Spirinchus thaleichthys in the northeastern Pacific Ocean

An understanding of oceanographic conditions and processes important to marine animal ecology is fundamental to the development of effective management and conservation actions. Longfin Smelt ( Spirinchus thaleichthys ) is a pelagic forage fish found in coastal and estuarine waters along the Pacific coast of North America from Alaska to central California. Substantial population declines in California’s San Francisco Estuary, where Longfin Smelt are protected under California’s Endangered Species Act, have prompted extensive study of estuarine factors associated with the decline. However, coastal factors that affect up to two-thirds of the Longfin Smelt life cycle are poorly understood and may be important drivers of population dynamics. We compiled coastal observations from numerous sources to estimate the range-wide coastal marine distribution of Longfin Smelt and assess habitat factors affecting distribution in the northeast Pacific Ocean. Based on maximum entropy species distribution models, Longfin Smelt distribution was correlated with depth, distance from the nearest estuary, sea surface temperature, and sea surface chlorophyll. Longfin Smelt were found in shallow, higher productivity coastal waters closer to estuaries, with depth and temperature the most consistent factors influencing distribution. Habitat suitability was highly variable at the southern extent of the range, particularly off the California coast, and was largely driven by habitat contractions associated with warm-water conditions. Study results provide insights into the habitat and range-wide distribution of an at-risk estuarine-reliant forage fish and are the first step toward identifying processes that affect the marine portion of the Longfin Smelt life cycle.

Frontiers in Marine Science↗

USGS2018

Gaps in kelp cover may threaten the recovery of California sea otters

Despite more than a century of federal protection, the California sea otter Enhydra lutris nereis remains threatened under the U.S. Endangered Species Act (ESA), and the population has not appreciably expanded its range in two decades. Here, we examine a novel dataset of 725 sea otter live strandings from 1984–2015 to gain insights into demographic and environmental factors underlying threats to sea otter recovery. Using multinomial logistic regression to evaluate spatiotemporal patterns of stranding causes, we demonstrate that increases in stranding rates, particularly outside the range center, are related to a substantial increase in shark bites. By contrast, trauma linked to human activities has declined dramatically, and now accounts for less than 5% of stranding cases. Within the range core, where the sea otter population seems regulated by prey availability, symptoms of energetic stress represent more than 63% of all strandings and are strongly associated with high sea otter density. Conversely, in range peripheries, the majority of strandings are caused by shark bite and neurological disease. Notably, these threats are virtually absent where nearshore habitat is characterized by at least 10% kelp canopy cover. Our analyses reveal that declining kelp cover may therefore constrain the population's spatial expansion and recovery in two key ways. Absence of kelp intensifies density‐independent threats in the range peripheries, and likely limits dispersal of reproductive females, which depend on kelp canopy for nursery habitat. These results highlight the significance of both top‐down and bottom‐up processes in population dynamics, and inform an ecosystem‐based approach to conservation planning.

California↗

USGS2014

The effects of spilled oil on coastal ecosystems: Lessons from the Exxon Valdez spill

Oil spilled from ships or other sources into the marine environment often occurs in close proximity to coastlines, and oil frequently accumulates in coastal habitats. As a consequence, a rich, albeit occasionally controversial, body of literature describes a broad range of effects of spilled oil across several habitats, communities, and species in coastal environments. This statement is not to imply that spilled oil has less of an effect in pelagic marine ecosystems, but rather that marine spills occurring offshore may be less likely to be detected, and associated effects are more difficult to monitor, evaluate, and quantify (Peterson et al ., 2012). As a result, we have a much greater awareness of coastal pollution, which speaks to our need to improve our capacities in understanding the ecology of the open oceans. Conservation of coastal ecosystems and assessment of risks associated with oil spills can be facilitated through a better understanding of processes leading to direct and indirect responses of species and systems to oil exposure. It is also important to recognize that oil spilled from ships represents only ~9% of the nearly 700 000 barrels of petroleum that enter waters of North America annually from anthropogenic sources (NRC, 2003). The immediate effects of large spills can be defined as acute, due to the obvious and dramatic effects that are observed. In contrast, the remaining 625 000 barrels that are released each year can be thought of as chronic non-point pollution, resulting from oil entering the coastal ocean as runoff in a more consistent but much less conspicuous rate. In this chapter, we primarily address the effects of large oil spills that occur near coastlines and consider their potential for both acute and chronic effects on coastal communities. As described below, in some instances, the effects from chronic exposure may meet or exceed the more evident acute effects from large spills. Consequently, although quantifying chronic effects from low exposure rates can be challenging and time-consuming, the results of such efforts provide insights into the understudied effects of chronic non-point oil pollution.

Alaska↗

USGS2016

Influence of demography and environment on persistence in toad populations

Effective conservation of rare species requires an understanding of how potential threats affect population dynamics. Unfortunately, information about population demographics prior to threats (i.e., baseline data) is lacking for many species. Perturbations, caused by climate change, disease, or other stressors can lead to population declines and heightened conservation concerns. Boreal toads ( Anaxyrus boreas boreas ) have undergone rangewide declines due mostly to the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd), with only a few sizable populations remaining in the southern Rocky Mountains, USA, that are disease-free. Despite the apparent region-wide occurrence of Bd, our focal populations in central Colorado were disease free over a 14-year capture-mark-recapture study until the recent discovery of Bd at one of the sites. We used recapture data and the Pradel reverse-time model to assess the influence of environmental and site-specific conditions on survival and recruitment. We then forecast changes in the toad populations with 2 growth models; one using an average lambda value to initiate the projection, and one using the most recent value to capture potential effects of the incursion of disease into the system. Adult survival was consistently high at the 3 sites, whereas recruitment was more variable and markedly low at 1 site. We found that active season moisture, active season length, and breeding shallows were important factors in estimating recruitment. Population growth models indicated a slight increase at 1 site but decreasing trends at the 2 other sites, possibly influenced by low recruitment. Insight into declining species management can be gained from information on survival and recruitment and how site-specific environmental factors influence these demographic parameters. Our data are particularly useful because they provide baseline data on demographics in populations before a disease outbreak and enhance our ability to detect changes in population parameters potentially caused by the disease.

Journal of Wildlife Management↗

USGS2021

Evaluation of a two-season banding program to estimate and model migratory bird survival

The management of North American waterfowl is predicated on long-term, continental scale banding implemented prior to the hunting season (i.e., July–September) and subsequent reporting of bands recovered by hunters. However, single-season banding and encounter operations have a number of characteristics that limit their application to estimating demographic rates and evaluating hypothesized limiting factors throughout the annual cycle. We designed and implemented a 2-season banding program for American black ducks ( Anas rubripes ), mallards ( A . platyrhynchos ), and hybrids in eastern North America to evaluate potential application to annual life cycle conservation and sport harvest management. We assessed model fit and compared estimates of annual survival among data types (i.e., pre-hunting season only [July–September], post-hunting season only [January–March], and 2-season [pre- and post-hunting season]) to evaluate model assumptions and potential application to population modeling and management. There was generally high agreement between estimates of annual survival derived using 2-season and pre-season only data for all age and sex cohorts. Estimates of annual survival derived from post-season banding data only were consistently higher for adult females and juveniles of both sexes. We found patterns of seasonal survival varied by species, age, and to a lesser extent, sex. Hunter recovered birds exhibited similar spatial distributions regardless of banding season suggesting banded samples were from the same population. In contrast, Goodness-Of-Fit tests suggest this assumption was statistically violated in some regions and years. We conclude that estimates of seasonal and annual survival for black ducks and mallards based on the 2-season banding program are valid and accurate based on model fit statistics, similarity in survival estimates across data and models, and similarities in the distribution of recoveries. The 2-season program provides greater precision and insight into the survival process and will improve the ability of researchers and managers to test competing hypotheses regarding population regulation resulting in more effective management.

Ecological Applications↗

USGS2020

Factors driving nutrient trends in streams of the Chesapeake Bay watershed

Despite decades of effort toward reducing nitrogen and phosphorus flux to Chesapeake Bay, water-quality and ecological responses in surface waters have been mixed. Recent research, however, provides useful insight into multiple factors complicating the understanding of nutrient trends in bay tributaries, which we review in this paper, as we approach a 2025 total maximum daily load (TMDL) management deadline. Improvements in water quality in many streams are attributable to management actions that reduced point sources and atmospheric nitrogen deposition and to changes in climate. Nutrient reductions expected from management actions, however, have not been fully realized in watershed streams. Nitrogen from urban nonpoint sources has declined, although water-quality responses to urbanization in individual streams vary depending on predevelopment land use. Evolving agriculture, the largest watershed source of nutrients, has likely contributed to local nutrient trends but has not affected substantial changes in flux to the bay. Changing average nitrogen yields from farmland underlain by carbonate rocks, however, may suggest future trends in other areas under similar management, climatic, or other influences, although drivers of these changes remain unclear. Regardless of upstream trends, phosphorus flux to the bay from its largest tributary has increased due to sediment infill in the Conowingo Reservoir. In general, recent research emphasizes the utility of input reductions over attempts to manage nutrient fate and transport at limiting nutrients in surface waters. Ongoing research opportunities include evaluating effects of climate change and conservation practices over time and space and developing tools to disentangle and evaluate multiple influences on regional water quality.

Chesapeake Bay watershed↗

USGS2019

Factors influencing anuran wetland occupancy in an agricultural landscape

Habitat disturbance is an important cause of global amphibian declines, with especially strong effects in areas of high agricultural use. Determining the influence of site characteristics on amphibian presence and success is vital to developing effective conservation strategies. We used occupancy analysis to estimate presence of four anuran species at wetlands in northern Iowa as a function of eight environmental covariates hypothesized to affect occupancy: fish and salamander abundance, invertebrate density, aquatic vegetative cover, wetland area, atrazine concentration in water, surrounding agricultural land use, and an overall wetland health score (wetland condition index [WCI]). We surveyed 27 wetlands multiple times in 2015 and 2016. Leopard Frogs ( Lithobates pipiens ) and American Toads ( Anaxyrus americanus ) were observed at 100% of the sites, Boreal Chorus Frogs ( Pseudacris maculata ) at 96%, and Gray Treefrogs ( Hyla spp.) at 81%. Wetland site occupancy for all species in our study ranged from 0.23 ( Hyla spp. tadpoles) to 0.95 ( L. pipiens adults), indicating that agricultural wetlands can provide refuge or habitat for amphibians. Fish abundance, percentage of cropland cover within 500 m of the wetland, and salamander abundance were among the variables best supported by our models although their estimated effects were weak. Wetland area, atrazine concentration, vegetative cover, and WCI also influenced occupancy probability, but for only a small number of species and life stages. The direction of predicted effects varied by species and life stage. Despite only weak evidence that the environmental factors we measured influenced anuran occupancy, our results provide insights for managers seeking to understand how amphibians use landscapes modified by agriculture.

Iowa↗

USGS2022

The North American Freshwater Migratory Fish Database (NAFMFD): Characterizing the migratory life histories of freshwater fishes of Canada, the United States and Mexico

Aim Migratory freshwater fishes are those that must access discrete habitats to complete their life cycles. Freshwater fish migrations occur around the world and provide numerous ecosystem services for humans and natural systems; however, many migratory species are in decline globally. A limiting factor to successfully conserve freshwater migratory fishes is that the migratory life histories of many species are unknown or only partially described. To provide researchers with critical and comprehensive information to conserve migratory fishes, we developed the North American Freshwater Migratory Fish Database (NAFMFD). Location Canada, Mexico and the United States. Taxon Freshwater fish. Methods To develop this database, we assigned migratory status, pattern and behaviour to a comprehensive list of freshwater fish species found throughout North America. We assembled the database which included assignments (i.e. migratory status, pattern and behaviour) as well as the sources used to make the assignments. Researchers and managers from across North America reviewed the database for completeness and accuracy on the migratory life histories of fishes. Results The database synthesizes current knowledge of migratory status, pattern and behaviour of native and non-native freshwater fishes throughout North America, including 1250 species representing 79 families and 325 genera. Results showcase the diversity of migratory life histories of freshwater fishes on the continent, including that at least 25% of North American freshwater fishes are migratory, 23% are non-migratory and 44% have undetermined migratory status. Main conclusions NAFMFD improves the quality of migratory data accessible to researchers, which supports a more holistic understanding of the threats encountered by migratory fishes, including habitat fragmentation. The approach we used in developing NAFMFD can provide guidance for developing similar databases in other regions. Collectively, our work offers new insights into the range of freshwater fish migratory life histories, stimulating a need to better understand this diversity globally.

Journal of Biogeography↗

USGS2023

Climate change impacts on native cutthroat trout habitat in Colorado streams

Headwater streams support vital aquatic habitat yet are vulnerable to changing climate due to their high elevation and small size. Coldwater fish are especially sensitive to the altered streamflow and water temperature regimes during summer low flow periods. Though previous studies have provided insights on how changes in climate and alterations in stream discharge may affect habitat availability for various native cutthroat trout species, suitable physical habitats have not been evaluated under future climate projections for the threatened Greenback Cutthroat Trout (GBCT) native to headwater regions of Colorado, USA. Thus, this study used field data collected from selected headwater streams across the current distribution of GBCT to construct one-dimensional hydraulic models to evaluate streamflow and physical habitat under four future climate projections. Results illustrate reductions in both predicted streamflow and physical habitat for all future climate projections across study sites. The projected mean summer streamflow shows greater decline (−52% on average) compared to the projected decline in mean August flow (−21% on average). Moreover, sites located at a relative higher elevation with larger substrate and steeper slope were projected to experience more reductions in physical habitat due to streamflow reductions. Specifically, streams with step-pool morphologies may experience grater changes in available habitat compared to pool-riffle streams. Future climate change studies related to coldwater fish that examine spatial variation in flow alteration could provide novel data to complement the existing literature on the thermal characteristics. Tailoring reintroduction and management efforts for GBCT to the individual headwater stream with adequate on-site monitoring could provide a more holistic conservation approach.

Colorado↗

USGS2021

Birds not in flight: Using camera traps to observe ground use of birds at a wind-energy facility

Context: Camera trapping is increasingly used to collect information on wildlife occurrence and behaviour remotely. Not only does the technique provide insights into habitat use by species of interest, it also gathers information on non-target species. Aims: We implemented ground-based camera trapping to investigate the behaviours of ground-dwelling birds, a technique that has largely been unutilised for studying birds, especially in wind-energy facilities. Methods: We used camera traps to monitor activities of Agassiz’s desert tortoises ( Gopherus agassizii ) at their self-constructed burrows in a wind-energy facility near Palm Springs, California, USA. While doing so, we collected data on numerous burrow commensals, including birds. Key results: Monitoring from late spring to mid-autumn in one year showed regular use of tortoise burrows and the immediate area by 12 species of birds, especially passerines. The most abundant species, as indicated by the number of photographs, but not necessarily individuals, was the rock wren ( Salpinctes obsoletus ), with a total of 1499 events. Birds appeared to use the interior or proximate vicinity of burrows for gathering nesting material, displaying, feeding, dust bathing and other activities. Of the bird species observed, 10 are known to be occasional casualties of turbine-blade strikes. The minimum known-age of a burrow had a positive relationship with bird counts. Conclusions: Using camera traps focused at ground level can be a useful tool in avian conservation efforts because it is an effective technique for measuring bird presence, activity and behaviour in altered habitats such as wind farms, especially for those species that are low flyers or ground dwellers. Implications: Acquiring data over the long term by using ground-based monitoring with camera traps could add to our understanding of avian behaviour and habitat use in relation to wind-energy infrastructure and operations, and help determine the vulnerability of avifauna that utilise the area.

California↗

USGS2011

Relating nutrient and herbicide fate with landscape features and characteristics of 15 subwatersheds in the Choptank River watershed

Excess nutrients and agrochemicals from non-point sources contribute to water quality impairment in the Chesapeake Bay watershed and their loading rates are related to land use, agricultural practices, hydrology, and pollutant fate and transport processes. In this study, monthly baseflow stream samples from 15 agricultural subwatersheds of the Choptank River in Maryland USA (2005 to 2007) were characterized for nutrients, herbicides, and herbicide transformation products. High-resolution digital maps of land use and forested wetlands were derived from remote sensing imagery. Examination of landscape metrics and water quality data, partitioned according to hydrogeomorphic class, provided insight into the fate, delivery, and transport mechanisms associated with agricultural pollutants. Mean Nitrate-N concentrations (4.9 mg/L) were correlated positively with percent agriculture (R 2 = 0.56) and negatively with percent forest (R 2 = 0.60). Concentrations were greater ( p = 0.0001) in the well-drained upland (WDU) hydrogeomorphic region than in poorly drained upland (PDU), reflecting increased denitrification and reduced agricultural land use intensity in the PDU landscape due to the prevalence of hydric soils. Atrazine and metolachlor concentrations (mean 0.29 μg/L and 0.19 μg/L) were also greater ( p = 0.0001) in WDU subwatersheds than in PDU subwatersheds. Springtime herbicide concentrations exhibited a strong, positive correlation (R 2 = 0.90) with percent forest in the WDU subwatersheds but not in the PDU subwatersheds. In addition, forested riparian stream buffers in the WDU were more prevalent than in the PDU where forested patches are typically not located near streams, suggesting an alternative delivery mechanism whereby volatilized herbicides are captured by the riparian forest canopy and subsequently washed off during rainfall. Orthophosphate, CIAT (6-chloro- N -(1-methylethyl)-1,3,5-triazine-2,4-diamine), CEAT (6-chloro- N -ethyl-1,3,5-triazine-2,4-diamine), and MESA (2-[(2-ethyl-6-methylphenyl) (2-methoxy-1-methylethyl)amino]-2-oxoethanesulfonic acid) were also analyzed. These findings will assist efforts in targeting implementation of conservation practices to the most environmentally-critical areas within watersheds to achieve water quality improvements in a cost-effective manner.

Delaware, Maryland↗

USGS2015

Migratory Patterns of Chinook Salmon Oncorhynchus tshawytscha Returning to a Large, Free-flowing River Basin

Upriver movements were determined for Chinook salmon Oncorhynchus tshawytscha returning to the Yukon River, a large, virtually pristine river basin. These returns have declined dramatically since the late 1990s, and information is needed to better manage the run and facilitate conservation efforts. A total of 2,860 fish were radio tagged during 2002–2004. Most (97.5%) of the fish tracked upriver to spawning areas displayed continual upriver movements and strong fidelity to the terminal tributaries entered. Movement rates were substantially slower for fish spawning in lower river tributaries (28–40 km d -1 ) compared to upper basin stocks (52–62 km d -1 ). Three distinct migratory patterns were observed, including a gradual decline, pronounced decline, and substantial increase in movement rate as the fish moved upriver. Stocks destined for the same region exhibited similar migratory patterns. Individual fish within a stock showed substantial variation, but tended to reflect the regional pattern. Differences between consistently faster and slower fish explained 74% of the within-stock variation, whereas relative shifts in sequential movement rates between “hares” (faster fish becoming slower) and “tortoises” (slow but steady fish) explained 22% of the variation. Pulses of fish moving upriver were not cohesive. Fish tagged over a 4-day period took 16 days to pass a site 872 km upriver. Movement rates were substantially faster and the percentage of atypical movements considerably less than reported in more southerly drainages, but may reflect the pristine conditions within the Yukon River, wild origins of the fish, and discrete run timing of the returns. Movement data can provide numerous insights into the status and management of salmon returns, particularly in large river drainages with widely scattered fisheries where management actions in the lower river potentially impact harvests and escapement farther upstream. However, the substantial variation exhibited among individual fish within a stock can complicate these efforts.

Alaska, Yukon Territory↗

USGS2025

Assessment of channel morphology, hydraulics, and bedload transport along the Siletz River, western Oregon

Significant Findings Chinook salmon ( Oncorhynchus tshawytscha ) and Pacific lamprey ( Entosphenus tridentatus ) are native, anadromous fish species in the Siletz River Basin, western Oregon, that face many threats to their survival in freshwater and the ocean. The Confederated Tribes of Siletz Indians of Oregon seek to mitigate freshwater threats to Chinook salmon and Pacific lamprey, where possible, with habitat conservation and restoration efforts. This study was conducted to assist the Confederated Tribes of Siletz Indians of Oregon in documenting and understanding the hydrogeomorphic processes shaping present-day habitat conditions and assessing future habitat implications for Chinook salmon and Pacific lamprey along the main-stem Siletz River. As such, this study focused on understanding geomorphic processes and patterns of channel change, including lateral and vertical adjustments in channel position and changes in bed-material sediment (sands, gravels, and cobbles that mantle the channel bed), which collectively determine overall patterns of channel morphology and fluvial habitats. Objective One was to evaluate lateral changes in channel position, vertical changes in bed elevation, and longitudinal patterns in bed-material particle size along the Siletz River using detailed channel maps developed from aerial photographs collected from 1939 to 2016, long-term records of stage and discharge collected by the U.S. Geological Survey (USGS) near the City of Siletz, and sediment particle size data. Objective Two was to assess hydraulic conditions using one- and two-dimensional hydraulic models and transport capacity of bed-material sediment using bedload transport models and sediment particle size data for a range of discharge conditions. Objective Three was to identify potential burrowing habitat for lamprey larvae (PBH) along the Siletz River network and provide insights in local factors influencing PBH along the main-stem Siletz River. The overall findings are synthesized to describe habitat implications for Chinook salmon and Pacific lamprey under present-day and future conditions. Results of Objective One, an evaluation of changes in channel position and bed elevations and longitudinal patterns in bed-material particle size along the Siletz River, include the following From 1939 to 2016, channel planform and the mapped area of gravel bars did not change considerably along the 97.2-kilometers (km) of Siletz River between Elk Creek and Millport Slough, except for in short sections generally less than 1 km long. This inherent lateral channel stability results from the resistant bedrock and terraces that bound most of the channel and limit lateral changes in channel position. Intermittent sections along the study reach where the active channel widened at channel bends displayed noticeable planform changes and increases in mapped bar area. From water year (WY; a 12-month period from October 1 through September 30 and named for the year in which it ends) 1906 to 2021, changes in the stage-discharge relation interpreted as rising and lowering channel bed levels were observed at the USGS streamgage 14305500 (Siletz River at Siletz, OR) in response to floods (such as high flows in February 1996 and January 2002 that exceeded 0.1 and 0.667 annual exceedance probabilities [AEP] events, respectively). However, the rating curve representing the stage-discharge relation did not change in response to high-magnitude floods between 2007 and 2021. Along the approximately 54-km of the Siletz River between Moonshine Park and the Bulls Bag area, surficial particle distributions varied considerably between sampling sites in response to changes in channel width and gradient, sediment inputs from tributaries, and basin geology. Despite this variability, median particle sizes tended to decrease in size in the downstream direction over the 54 km. Results of Objective Two, an evaluation of hydraulic and bedload transport conditions along the Siletz River, include the following The most substantial increases in maximum and mean water velocity and bedload sediment transport capacity occurred at events between the 0.995 and 0.50 AEPs. Events of these magnitudes occur approximately every 1–2 years. Smaller events (0.995 AEP) are generally contained by the banks of the main channel, whereas larger events (0.50 AEP) generally spill over the banks and inundate high-elevation bar and low-elevation floodplain surfaces. Multiple smaller floods within a WY that exceed the 0.995 and 0.50 AEPs (such as in WY 1996) can transport as much or more bed-material sediment than a single, higher magnitude event (such as the maximum event recorded in WY 2000 with an estimated AEP of around 0.002). Bedload transport capacity generally exceeds sediment supply (greater than 2 millimeters [mm]) for most of the study area from Wildcat Creek to the City of Siletz as evidenced by substantial in-channel bedrock. Despite overall conditions of limited sediment supply, transport capacity still varies considerably within and between years with discharge magnitude and spatially in relation to local hydraulics imposed by bedrock, channel morphology, and human infrastructure (such as bridges). Results of Objective Three, an analysis of PBH for lamprey larvae, include the following About 28 percent of the Siletz River network meets the mean annual suspended sediment loads and channel slope criteria for PBH. Along the main-stem Siletz River, in-channel bedrock outcrops and high transport capacity are expected to further constrain PBH. Together, these results suggest that most of the Siletz River between Wildcat Creek and the City of Siletz has had only modest vertical and lateral change between the 1930s and 2010s because of the bedrock in and along the main channel and the river’s relatively high transport capacity relative to bed-material sediment supply. However, localized sections of the Siletz River where the active channel widens, particularly at channel bends, exhibited some change in channel planform and the locations and area of gravel bars. In the future, moderate increases in autumn-winter discharge may not result in substantial changes in coarse gravel bars along the Siletz River but may result in selective transport of finer bed-material sediment (gravel, sands, and silts) that provide spawning habitats for Chinook salmon and Pacific lamprey and burrowing habitats for lamprey larvae. Assuming no substantial changes in bed-material sediment supply, increased bedload transport capacity may cause frequent entrainment of lamprey larvae that are burrowed in coarse sand deposits, suspension and downstream transport of salmon eggs incubating in gravels, and reductions in the areas of spawning gravels for Chinook salmon and Pacific lamprey. Exact implications of current and future discharge conditions for these species along the Siletz River depends on many factors, including sediment supply, local hydraulics, and the timing of flood events relative to fish life stages.

Oregon↗

USGS2022

Multi-species inference of exotic annual and native perennial grasses in rangelands of the western United States using Harmonized Landsat and Sentinel-2 data

The invasion of exotic annual grass (EAG), e.g., cheatgrass ( Bromus tectorum ) and medusahead ( Taeniatherum caput-medusae ), into rangeland ecosystems of the western United States is a broad-scale problem that affects wildlife habitats, increases wildfire frequency, and adds to land management costs. However, identifying individual species of EAG abundance from remote sensing, particularly at early stages of invasion or growth, can be problematic because of overlapping controls and similar phenological characteristics among native and other exotic vegetation. Subsequently, refining and developing tools capable of quantifying the abundance and phenology of annual and perennial grass species would be beneficial to help inform conservation and management efforts at local to regional scales. Here, we deploy an enhanced version of the U.S. Geological Survey Rangeland Exotic Plant Monitoring System to develop timely and accurate maps of annual (2016–2020) and intra-annual (May 2021 and July 2021) abundances of exotic annual and perennial grass species throughout the rangelands of the western United States. This monitoring system leverages field observations and remote-sensing data with artificial intelligence/machine learning to rapidly produce annual and early season estimates of species abundances at a 30-m spatial resolution. We introduce a fully automated and multi-task deep-learning framework to simultaneously predict and generate weekly, near-seamless composites of Harmonized Landsat Sentinel-2 spectral data. These data, along with auxiliary datasets and time series metrics, are incorporated into an ensemble of independent XGBoost models. This study demonstrates that inclusion of the Normalized Difference Vegetation Index and Normalized Difference Wetness Index time-series data generated from our deep-learning framework enables near real-time and accurate mapping of EAG (Median Absolute Error (MdAE): 3.22, 2.72, and 0.02; and correlation coefficient (r): 0.82, 0.81, and 0.73; respectively for EAG, cheatgrass, and medusahead) and native perennial grass abundance (MdAE: 2.51, r:0.72 for Sandberg bluegrass ( Poa secunda )). Our approach and the resulting data provide insights into rangeland grass dynamics, which will be useful for applications, such as fire and drought monitoring, habitat suitability mapping, as well as land-cover and land-change modelling. Spatially explicit, timely, and accurate species-specific abundance datasets provide invaluable information to land managers.

western United States↗

USGS2009

Assessing rates of forest change and fragmentation in Alabama, USA, using the vegetation change tracker model

Forest change is of great concern for land use decision makers and conservation communities. Quantitative and spatial forest change information is critical for addressing many pressing issues, including global climate change, carbon budgets, and sustainability. In this study, our analysis focuses on the differences in geospatial patterns and their changes between federal forests and nonfederal forests in Alabama over the time period 1987–2005, by interpreting 163 Landsat Thematic Mapper (TM) scenes using a vegetation change tracker (VCT) model. Our analysis revealed that for the most part of 1990 s and between 2000 and 2005, Alabama lost about 2% of its forest on an annual basis due to disturbances, but much of the losses were balanced by forest regeneration from previous disturbances. The disturbance maps revealed that federal forests were reasonably well protected, with the fragmentation remaining relatively stable over time. In contrast, nonfederal forests, which are predominant in area share (about 95%), were heavily disturbed, clearly demonstrating decreasing levels of fragmentation during the time period 1987–1993 giving way to a subsequent accelerating fragmentation during the time period 1994–2005. Additionally, the identification of the statistical relationships between forest fragmentation status and forest loss rate and forest net change rate in relation to land ownership implied the distinct differences in forest cutting rate and cutting patterns between federal forests and nonfederal forests. The forest spatial change information derived from the model has provided valuable insights regarding regional forest management practices and disturbance regimes, which are closely associated with regional economics and environmental concerns.

Forest Ecology and Management↗