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At least 433 records · Page 24Linked to original sources

Genetic variation among island and continental populations of Burrowing Owl (Athene cunicularia) subspecies in North America

Burrowing Owls ( Athene cunicularia ) have a large geographic range spanning both North and South America and resident populations occur on many islands in the eastern Pacific Ocean and the Caribbean Sea. Many owl populations are isolated and disjunct from other populations, but studies on genetic variation within and among populations are limited. We characterized DNA microsatellite variation in populations varying in size and geographic isolation in the Florida ( A. c. floridana ), the Western ( A. c. hypugaea ), and the Clarion ( A. c. rostrata ) subspecies of the Burrowing Owl. We also characterized genetic variation in a geographically isolated population of the western subspecies in central Mexico (near Texcoco Lake). Clarion Burrowing Owls had no intrapopulation variation (i.e., fixation) at 5 out of 11 microsatellite loci, a likely outcome of genetic drift in an isolated and small population. The Florida subspecies had only polymorphic loci but had reduced levels of genetic variation compared with the more-widespread western subspecies that occurs throughout western North America. Despite the extensive geographic distribution of the Western Burrowing Owl, we found genetic differentiation between the panmictic population north of the Trans-Mexican Volcanic Belt and the resident Texcoco Lake population in central Mexico.

Journal of Raptor Research

Foraging destinations and marine habitat use of short-tailed albatrosses: A multi-scale approach using first-passage time analysis

We used satellite telemetry, remotely sensed data (bathymetry, chlorophyll a (chl a), sea-surface temperature (SST), wind speed) and first-passage time (FPT) analysis to determine the distribution, movement patterns, and habitat associations of short-tailed albatrosses (Phoebastria albatrus) during the non-breeding season, 2002 and 2003. Satellite transmitters were deployed on birds immediately prior to their departure from a breeding colony at Torishima, Japan (n = 11), or at-sea in the Aleutian Islands (n = 3). Tracking durations ranged from 51 to 138 days for a total of 6709 locations after filtering (131 - 808 per bird). FPT (time required to transit a circle of given radius) revealed the location and spatial scale of area-restricted search (ARS) patterns along flight paths. On average, ARS occurred within 70 km radii. Consequently, the fit of the habitat use models increased at spatial scales beyond a 40 km FPT radius (R2 = 0.31) and stabilized for scales of 70 km and larger (R2=0.40- 0.51). At all scales, wind speed, depth or depth gradient, and chl a or chl a gradient had a significant effect on FPT (i.e., residence time). FPT increased within regions of higher gradients of depth and chl a. In contrast, FPT decreased within regions of greater depth and wind speed, with a significant interaction of wind speed and depth at some scales. Sea-surface temperature or its interactions were only significant at large spatial scales (???160 km FPT radius). Albatrosses engaged in ARS activities primarily over the shelf break and slope, including Kuroshio and Oyashio regions off the western subarctic gyre. Occasionally, birds transited the northern boundary of the Kuroshio Extension while in-route to the Aleutian Islands and Bering Sea, but overall spent little time in the western gyre. In the Aleutian Islands, ARS occurred within straits, particularly along the central and western part of the archipelago. In the Bering Sea, ARS occurred along the northern continental shelf break, the Kamchatka Current region, and east of the Commander Islands. Non-breeding short-tailed albatross concentrate foraging in oceanic areas characterized by gradients in topography and water column productivity. This study provides an understanding of the foraging ecology for a highly migratory, imperiled seabird, and confirms the importance of shelf break and slope regions as hot spots for a variety of top marine predators in the North Pacific.

Deep-Sea Research Part II: Topical Studies in Ocea

Channel change and bed-material transport in the Lower Chetco River, Oregon

The lower Chetco River is a wandering gravel-bed river flanked by abundant and large gravel bars formed of coarse bed-material sediment. Since the early twentieth century, the large gravel bars have been a source of commercial aggregate for which ongoing permitting and aquatic habitat concerns have motivated this assessment of historical channel change and sediment transport rates. Analysis of historical channel change and bed-material transport rates for the lower 18 kilometers shows that the upper reaches of the study area are primarily transport zones, with bar positions fixed by valley geometry and active bars mainly providing transient storage of bed material. Downstream reaches, especially near the confluence of the North Fork Chetco River, are zones of active sedimentation and channel migration. Multiple analyses, supported by direct measurements of bedload during winter 2008–09, indicate that since 1970 the mean annual flux of bed material into the study reach has been about 40,000–100,000 cubic meters per year. Downstream tributary input of bed-material sediment, probably averaging 5–30 percent of the influx coming into the study reach from upstream, is approximately balanced by bed-material attrition by abrasion. Probably little bed material leaves the lower river under natural conditions, with most net influx historically accumulating in wider and more dynamic reaches, especially near the North Fork Chetco River confluence, 8 kilometers upstream from the Pacific Ocean. The year-to-year flux, however, varies tremendously. Some years may have less than 3,000 cubic meters of bed material entering the study area; by contrast, some high-flow years, such as 1982 and 1997, likely have more than 150,000 cubic meters entering the reach. For comparison, the estimated annual volume of gravel extracted from the lower Chetco River for commercial aggregate during 2000–2008 has ranged from 32,000 to 90,000 cubic meters and averaged about 59,000 cubic meters per year. Mined volumes probably exceeded 140,000 cubic meters per year for several years in the late 1970s. Repeat surveys and map analyses indicate a reduction in bar area and sinuosity between 1939 and 2008, chiefly in the period 1965–95. Repeat topographic and bathymetric surveys show channel incision for substantial portions of the study reach, with local areas of bed lowering by as much as 2 meters. A specific gage analysis at the upstream end of the study reach indicates that incision and narrowing followed aggradation culminating in the late 1970s. These observations are all consistent with a reduction of sediment supply relative to transport capacity since channel surveys in the late 1970s, probably owing to a combination of (1) bed sediment removal and (2) transient river adjustments to large sediment volumes brought by floods such as those in 1964 and, to a lesser extent, 1996.

Oregon

Circum-Pacific seismic potential: 1989-1999

The seismic potential for 96 segments of simple plate boundaries around the circum-Pacific region is presented in terms of the conditional probability for the occurrence of either large or great interplate earthquakes during the next 5, 10, and 20 years (i.e., 1989-1994, 1989-1999 and 1989-2009). This study represents the first probabilistic summary of seismic potential on this scale, and involves the comparison of plate boundary segments that exhibit varying recurrence times, magnitudes, and tectonic regimes. Presenting these data in a probabilistic framework provides a basis for the uniform comparison of seismic hazard between these differing fault segments, as well as accounting for individual variations in recurrence time along a specific fault segment, and uncertainties in the determination of the average recurrence time. The definition of specific segments along simple plate boundaries relies on the mapping of earthquake rupture zones as defined by the aftershock distributions of prior large and great earthquakes, and historic descriptions of felt intensities and damage areas. The 96 segments are chosen to represent areas likely to be ruptured by "characteristic" earthquakes of a specified size or magnitude. The term characteristic implies repeated breakage of a plate boundary segment by large or great earthquakes whose source dimensions are similar from cycle to cycle. This definition does not exclude the possibility that occasionally adjacent characteristic earthquake segments may break together in a single, larger event. Conversely, a segment may also break in a series of smaller ruptures. Estimates of recurrence times and conditional probabilities for characteristic earthquakes along segments of simple plate boundaries are based on 1) the historic and instrumental record of large and great earthquake occurrence; 2) paleoseismic evidence of recurrence from radiometric dating of Holocene features produced by earthquakes; 3) direct calculations of recurrence time from the size of the most recent characteristic event and the long-term rates of plate motion assuming the validity of the time-predictable model for earthquake recurrence; and 4) the application of a lognormal distribution for the recurrence times of large and great earthquakes. Time-dependent estimates of seismic potential are based on a physical model of earthquake occurrence which assumes that the probability for an earthquake is low immediately following the occurrence of a characteristic earthquake and increases with time as the stress on the fault segment recovers the stress drop of the event. This study updates earlier work on seismic gaps by explicitly including both recurrence time information and the temporal proximity to the next event as factors in describing earthquake hazards. Currently, 11 out of 96 regions have a high (i.e., ???50%) probability of recurrence during the next 10 years and are characterized by either fairly short (i.e., less than 30-40 years) recurrence times or long elapsed times relative to the average recurrence time. The majority of these segments are located in the southwest Pacific (Vanuatu, New Guinea, and Tonga). When a longer time window is considered (e.g., 20 years or 1989-2009), 30 out of 96 regions have a high potential. Many of these regions are located near areas of high population density. These determinations do not preclude rupture of other fault segments, with less than a 50% chance in 10 or 20 years, or large and great earthquakes in areas we have not studied in detail. While this study has summarized the seismic potential for a large number of regions around the circum-Pacific, there are still a number of geographic and seismotectonic regions that need to be considered, including Indonesia, the Philippines, New Zealand, and the countries that surround the Caribbean basin. ?? 1991 Birkha??user Verlag.

Pure and Applied Geophysics PAGEOPH

Temperature and water-quality diversity and the effects of surface-water connection in off-channel features of the Willamette River, Oregon, 2015–16

Water-quality conditions (including temperature) in the Willamette River and many of its adjacent off-channel features, such as alcoves and side channels, were monitored between river miles 67 (near Salem, Oregon) and 168 (near Eugene, Oregon) during the summers of 2015 and 2016. One or more parameters (water temperature, dissolved oxygen, pH, specific conductance, and [or] water depth) were continuously measured at sites in the main channel (9 sites in 2015; 5 sites in 2016) and select off-channel features (20 features in 2015; 22 features in 2016). This study was initiated in reaction to the unusually warm, dry weather and resulting low streamflows that occurred in the Pacific Northwest in 2015 and the need for flow managers to understand the effects of streamflow on water-quality conditions in off-channel features of the Willamette River. Field monitoring was focused on documenting water-quality conditions during low summer streamflows and during fluctuations in streamflow, including when side channels became alcoves and reconnected to become side channels again. Water in the main channel of the Willamette River upstream from river mile 50 near Newberg typically is well mixed during summer, with warm water temperatures (greater than 18 degrees Celsius) and high dissolved-oxygen concentrations (often greater than 7.7 milligrams per liter). During low summer flows, a diverse suite of off-channel features exists adjacent to the main channel of the Willamette River. Despite temporal and spatial variability within individual features, comparison of continuous water-temperature data between the main channel and off-channel features indicated that some off-channel features were consistently cooler than the main channel, some were consistently warmer than the main channel, and others frequently fluctuated between warmer or cooler than the main channel. Site-specific characteristics including upstream connection, depth, and presence or absence of aquatic or riparian vegetation were factors that seemed to affect the water quality of a feature. Results from this study showed a relation between the geomorphology, hydrology, ecology, and water quality of an off-channel feature. Data confirmed that many features that can be classified as cold-water refuges based on water-temperature standards also contained low concentrations of dissolved oxygen that may not be suitable for sensitive fish species. A simplified site classification scheme is proposed that links water-quality conditions in measured off-channel features with site-specific characteristics and summer streamflows. The site classification scheme was extended to create a theoretical process matrix that relates measured water-quality conditions to a list of the processes and site-specific characteristics that could create those conditions.

Oregon

Parasitic nematodes of marine fishes from Palmyra Atoll, East Indo-Pacific, including a new species of Spinitectus (Nematoda, Cystidicolidae)

Here, we present the results of a taxonomic survey of the nematodes parasitizing fishes from the lagoon flats of Palmyra Atoll, Eastern Indo-Pacific. We performed quantitative parasitological surveys of 653 individual fish from each of the 44 species using the intertidal sand flats that border the atoll’s lagoon. We provide morphological descriptions, prevalence, and mean intensities of the recovered seven species of adult nematode ( Pulchrascaris chiloscyllii , Capillariidae gen. sp., Cucullanus bourdini, Cucullanus oceaniensis, Pseudascarophis sp., Spinitectus (Paraspinitectus) palmyraensis sp. nov., Philometra pellucida ) and three larval stages ( Pulchrascaris sp., Hysterothylacium sp., Cucullanus sp.). We recorded: Pulchrascaris chiloscyllii from Carcharhinus melanopterus ; Capillariidae gen. sp. from Chaetodon lunula, Lutjanus fulvus, and Ellochelon vaigiensis ; Cucullanus bourdin i from Arothron hispidus ; Cucullanus oceaniensis from Abudefduf sordidus ; Pseudascarophis sp. from Chaetodon auriga, Chaetodon lunula, and Mulloidichthys flavolineatus ; Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. from Albula glossodonta ; Philometra pellucida from Arothron hispidus ; and three larval forms, Pulchrascaris sp. from Acanthurus triostegus, Acanthurus xanthopterus, Rhinecanthus aculeatus, Platybelone argalus, Carangoides ferdau, Carangoides orthogrammus, Caranx ignobilis, Caranx melampygus, Caranx papuensis, Chaetodon auriga, Chanos chanos, Amblygobius phalaena, Asterropteryx semipunctata, Valencienea sexguttata, Kyphosus cinerascens, Lutjanus fulvus, Lutjanus monostigma, Ellochelon vaigiensis, Mulloidichthys flavolineatus, Upeneus taeniopterus, Gymnothorax pictus, Abudefduf septemfasciatus, Abudefduf sordidus, and Stegastes nigricans ; Hysterothylacium sp. type MD from Acanthurus triostegus, Carangoides ferdau, Chaetodon lunula, Chanos chanos, Kyphosus cinerascens, Abudefduf sordidus, and Arothron hispidus ; and Cucullanus sp. from Caranx ignobilis . Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. (Cystidicolidae) is described from the intestine of roundjaw bonefish Albula glossodonta . All the nematode species reported in this study represent new geographical records. We discuss how our survey findings compare to other areas of the Indo-Pacific, and the way the relatively numerical dominance of trophically transmitted larval stages likely reflect the intact food web of Palmyra Atoll, which includes a large biomass of large-bodied top predator sharks and ray-finned fishes.

ZooKeys

Marine mineral resources of Pacific Islands— A review of the Exclusive Economic Zones of islands of U.S. affiliation, excluding the State of Hawaii

The United States Exclusive Economic Zone (EEZ) was established in 1983 and comprises all marine areas within 200 nautical miles (370 kilometers) of the nearest U.S. land. This vast area of 3.38 million square nautical miles (11.6 million square kilometers) is about 20 percent greater than the entire land area of the United States. The resource potential of the vast mineral deposits that occur within the U.S. EEZ is unknown, despite field studies that have taken place during the past 25 years. Since about 1975, information on marine mineral deposits has been obtained by numerous research cruises to the Pacific Ocean by the U.S. Geological Survey (USGS), the U.S. National Oceanic and Atmospheric Administration (NOAA), equivalent government agencies in Germany, Canada, France, Russia, Japan, China, South Korea, Australia, and New Zealand, and by academic researchers from all of these nations. Although most of the cruises by other nations explored areas outside the U.S. EEZ, information gained from those studies can aid in the evaluation of the mineral potential in the U.S. EEZ. However, the global effort remains inadequate to allow for the quantitative evaluation of mineral resources contained within the EEZ of nations or within international regions of the oceans.

Circular

The productivity of Cascadia aftershock sequences

This study addresses questions about the productivity of Cascadia mainshock–aftershock sequences using earthquake catalogs produced by the Geological Survey of Canada and the Pacific Northwest Seismic Network. Questions concern the likelihood that future moderate to large intermediate depth intraslab earthquakes in Cascadia would have as few detectable aftershocks as those documented since 1949. More broadly, for Cascadia, we consider if aftershock productivities vary spatially, if they are outliers among global subduction zones, and if they are consistent with a physical model in which aftershocks are clock‐advanced versions of tectonically driven background seismicity. A practical motivation for this study is to assess the likely accuracy of aftershock forecasts based on productivities derived from global data that are now being issued routinely by the U.S. Geological Survey. For this reason, we estimated productivity following the identical procedures used in those forecasts and described in Page et al. (2016) . Results indicate that in Cascadia we can say that the next intermediate depth intraslab earthquake will likely have just a few detectable aftershocks and that aftershock productivity appears to be an outlier among global subduction zones, with rates that on average are lower by more than half, except for mainshocks in the upper plate. Our results are consistent with a clock‐advance model; productivities may be related to the proximity of mainshocks to a population of seismogenic fault patches and correlate with background seismicity rates. The latter and a clear correlation between productivities with mainshock depth indicate that both factors may have predictive value for aftershock forecasting.

British Columbia, California, Oregon, Washington

A strategy for recovering continuous behavioral telemetry data from Pacific walruses

Tracking animal behavior and movement with telemetry sensors can offer substantial insights required for conservation. Yet, the value of data collected by animal-borne telemetry systems is limited by bandwidth constraints. To understand the response of Pacific walruses ( Odobenus rosmarus divergens ) to rapid changes in sea ice availability, we required continuous geospatial chronologies of foraging behavior. Satellite telemetry offered the only practical means to systematically collect such data; however, data transmission constraints of satellite data-collection systems limited the data volume that could be acquired. Although algorithms exist for reducing sensor data volumes for efficient transmission, none could meet our requirements. Consequently, we developed an algorithm for classifying hourly foraging behavior status aboard a tag with limited processing power. We found a 98% correspondence of our algorithm's classification with a test classification based on time–depth data recovered and characterized through multivariate analysis in a separate study. We then applied our algorithm within a telemetry system that relied on remotely deployed satellite tags. Data collected by these tags from Pacific walruses across their range during 2007–2015 demonstrated the consistency of foraging behavior collected by this strategy with data collected by data logging tags; and demonstrated the ability to collect geospatial behavioral chronologies with minimal missing data where recovery of data logging tags is precluded. Our strategy for developing a telemetry system may be applicable to any study requiring intelligent algorithms to continuously monitor behavior, and then compress those data into meaningful information that can be efficiently transmitted.

Wildlife Society Bulletin

Isotopic compositions of modern seawater at the Mariana and Yap trenches

The isotopic composition of ocean water is crucial in studying water masses and mixing in deep oceans, isotope mass balance in ocean water regulated by high-temperature and low-temperature hydrothermal alterations, and the exchange of water among crust-ocean-mantle reservoirs. We collected 40 water samples from Challenger Deep and the water column above at the Mariana Trench (down to 10,923 m) and 12 from the Yap Trench (down to 6,300 m) in the western Pacific Ocean in three hadal cruises from 2016 to 2018. The δ 2 H values at the Mariana and Yap Trenches average 0.1 ± 0.2 ‰ (1σ error). The δ 2 H records from this study, together with existing databases, manifest that deep waters have δ 2 H values varying between −2 and +2 ‰ (except for the Weddell Sea, the Greenland, Iceland, and Norwegian Seas, and the Mediterranean Sea), with increasing values from the Southern Ocean to the Pacific and Indian Oceans, and to the Atlantic Ocean. The average δ 18 O value of water samples from both trenches is –0.04 ± 0.03 ‰ (1σ error). The correlation between δ 18 O and salinity distinguishes abyssal water masses at the study region, UCDW (Upper Circumpolar Deep Water) and LCDW (Lower Circumpolar Deep Water). These water samples from the Mariana and Yap Trenches gave an average 17 O excess value of −6 ± 1 ppm (1σ error). Our 52 data records of 17 O excess expand the 38 existing records for the deep ocean. Both δ 2 H and 17 O excess of modern ocean have rolled as anchor points to reconstruct compositions of Earth’s early ocean.

ACS Earth and Space Chemistry

Channel change and bed-material transport in the Lower Chetco River, Oregon

The lower Chetco River is a wandering gravel-bed river flanked by abundant and large gravel bars formed of coarse bed-material sediment. The large gravel bars have been a source of commercial aggregate since the early twentieth century for which ongoing permitting and aquatic habitat concerns have motivated this assessment of historical channel change and sediment transport rates. Analysis of historical channel change and bed-material transport rates for the lower 18 kilometers show that the upper reaches of the study area are primarily transport zones, with bar positions fixed by valley geometry and active bars mainly providing transient storage of bed material. Downstream reaches, especially near the confluence of the North Fork Chetco River, have been zones of active sedimentation and channel migration. Multiple analyses, supported by direct measurements of bedload during winter 2008–09, indicate that since 1970 the mean annual flux of bed material into the study reach has been about 40,000–100,000 cubic meters per year. Downstream tributary input of bed-material sediment, probably averaging 5–30 percent of the influx coming into the study reach from upstream, is approximately balanced by bed-material attrition by abrasion. Probably very little bed material leaves the lower river under natural conditions, with most of the net influx historically accumulating in wider and more dynamic reaches, especially near the North Fork Chetco River confluence, 8 kilometers upstream from the Pacific Ocean. The year-to-year flux, however, varies tremendously. Some years probably have less than 3,000 cubic meters of bed-material entering the study area; by contrast, some high-flow years, such as 1982 and 1997, likely have more than 150,000 cubic meters entering the reach. For comparison, the estimated annual volume of gravel extracted from the lower Chetco River for commercial aggregate during 2000–2008 has ranged from 32,000 to 90,000 cubic meters and averaged about 59,000 cubic meters per year. Mined volumes probably exceeded 140,000 cubic meters per year for several years in the late 1970s. Repeat surveys and map analyses indicate a reduction in bar area and sinuosity between 1939 and 2008, chiefly in the period 1965–95. Repeat topographic and bathymetric surveys show channel incision for substantial portions of the study reach, with local areas of bed lowering by as much as 2 meters. A specific gage analysis at the upstream end of the study reach indicates that incision and narrowing followed aggradation culminating in the late 1970s. These observations are all consistent with a reduction of sediment supply relative to transport capacity since channel surveys in the late 1970s, probably owing to a combination of (1) bed-sediment removal and (2) transient river adjustments to large sediment volumes brought by floods such as those in 1964, and to a lesser extent, 1996.

Open-File Report

Interpreting the paleozoogeography and sea level history of thermally anomalous marine terrace faunas: A case study from the the last interglacial complex of San Clemente Island, California

Marine invertebrate faunas with mixtures of extralimital southern and extralimital northern faunal elements, called thermally anomalous faunas, have been recognized for more than a century in the Quaternary marine terrace record of the Pacific Coast of North America. Although many mechanisms have been proposed to explain this phenomenon, no single explanation seems to be applicable to all localities where thermally anomalous faunas have been observed. Here, we describe one such thermally anomalous fossil fauna that was studied on the second emergent marine terrace at Eel Point on San Clemente Island. The Eel Point terrace complex is a composite feature, consisting of a narrow upper bench (terrace 2a) and a broader lower bench (terrace 2b). Terrace 2b, previously dated from ∼128 ka to ∼114 ka, was thought to date solely to marine isotope stage (MIS) 5.5, representing the peak of the last interglacial period. Nevertheless, the fauna contains an extralimital northern species and several northward-ranging species, as well as an extralimital southern species and several southward-ranging species. Similar faunas with thermally anomalous elements have also been reported from San Nicolas Island, Point Loma (San Diego County), and Cayucos (San Luis Obispo County), California. U-series dating of corals at those localities shows that the thermally anomalous faunas may be the result of mixing of fossils from both the ∼100-ka (cool-water) and the ∼120-ka (warm-water) sea level high stands. Submergence, erosion, and fossil mixing of the ∼120-ka terraces by the ∼100-ka high-sea stand may have been possible due to glacial isostatic adjustment (GIA) effects on North America, which could have resulted in a higher-than-present local sea level stand at ∼100 ka. The terrace elevation spacing on San Clemente Island is very similar to that on San Nicolas Island, and we hypothesize that a similar mixing took place on San Clemente Island. Existing fossil records from older terraces elsewhere in California also show thermally anomalous elements, indicating that the scenario presented here for the last interglacial complex may have applicability to much of the marine Quaternary record for the Pacific Coast.

California

Production and characterization of monoclonal antibodies to IgM of Pacific herring ( Clupea pallasii )

Pacific herring ( Clupea pallasii ) have a central role in the North Pacific ecosystem as a forage fish species and are natural reservoirs of several important finfish pathogens, including Viral hemorrhagic septicemia virus (VHSV). Here, we report the identification of the gene encoding the immunoglobulin mu (IgM) heavy chain, as well as the development and characterization of monoclonal antibodies (MAbs) that specifically react with Pacific herring IgM. Pacific herring immunoglobulin was purified and consisted of heavy and light chains of approximately 80 and 25 kDa. Three hybridoma clones were initially identified by ELISA as reactive with purified immunoglobulin but only one clone was able to detect an 80 kDa protein in Pacific and Atlantic herring (Clupea harengus) whole plasma by denaturing western blot. However, all three MAbs were able to precipitate an 80 kDa protein from Pacific herring and LCMS sequencing of peptide fragments derived from this protein matched the predicted amino acid sequence of the cloned, heavy chain gene. In addition, two of the MAbs stained cells within the putative lymphocyte gates for the spleen, anterior kidney and posterior kidney but were not reactive for myeloid/granulocyte gates, which is consistent with these MAbs reacting with surface IgM + B-cells. To our knowledge, this is the first report of IgM-related gene sequences and anti-IgM monoclonal antibodies from any member of the family Clupeidae. The antibodies produced in this study are critical for achieving our long-term goal of conducting serological surveillance to assess pathogen exposure in natural populations of Pacific herring.

Fish and Shellfish Immunology

Juvenile coho salmon growth differences track biennial pink salmon spawning patterns

1. Spawning Pacific salmon ( Oncorhynchus spp.) provide marine-derived resources (MDR) to freshwater food webs in the form of eggs, flesh and maggots that consume salmon carcasses, all of which positively impact stream-dwelling fish growth. Pink salmon ( O. gorbuscha ) are widely distributed throughout coastal catchments along the North Pacific Ocean and display increased spawning abundances in odd years, owing to a fixed 2-year life history. While many studies have found that foraging and growth of stream-dwelling salmonids are improved by increased adult salmon spawning abundance, few studies have investigated the importance of alternating pink salmon spawning abundance between years. 2. Here, we examined how patterns of pink salmon spawning abundance impact the foraging and growth of juvenile coho salmon ( O. kisutch ). First, we used bioenergetic simulations to generate a hypothesis that coho salmon growth would increase during odd relative to even years. We then collected empirical juvenile coho salmon diet and growth data from a Southeast Alaska catchment in 2021 (pink salmon spawning) and 2022 (no pink salmon spawning). Field data were compared against simulation predictions to understand impacts of biennial pink salmon spawning patterns on juvenile coho salmon growth. 3. Empirical growth data revealed similar patterns to bioenergetic simulations. Age-1 coho salmon grew 16.6 mm longer and 5.5 g heavier on average in 2021 compared to 2022. Age-0 coho salmon displayed minor growth differences between years. 4. These results support bioenergetic model predictions and suggest that patterns of pink salmon spawning abundance can impart interannual growth disparities to juvenile coho salmon. Moreover, we show that distinct spawning characteristics of Pacific salmon species are important when understanding patterns of MDR transfer and growth responses in stream fishes.

Alaska

Mercury contamination in three species of anuran amphibians from the Cache Creek watershed, California, USA

Fish and wildlife may bioaccumulate mercury (Hg) to levels that adversely affect reproduction, growth, and survival. Sources of Hg within the Cache Creek Watershed in northern California have been identified, and concentrations of Hg in invertebrates and fish have been documented. However, bioaccumulation of Hg by amphibians has not been evaluated. In this study, adult and juvenile American bullfrogs ( Lithobates catesbeianus ) and foothill yellow-legged frogs ( Rana boylii ), adult Northern Pacific treefrogs ( Pseudacris regilla ), and larval bullfrogs were collected and analyzed for total Hg. One or more species of amphibians from 40% of the 35 sites had mean Hg concentrations greater than the US Environmental Protection Agency’s tissue residue criterion for fish (0.3 μg/g). Of the bullfrog tissues analyzed, the liver had the highest concentrations of both total Hg and methyl mercury. Total Hg in carcasses of bullfrogs was highly correlated with total Hg in leg muscle, the tissue most often consumed by humans.

California

Reconciliation of geochronology and paleozoogeography for Quaternary marine terraces, San Luis Obispo Bay area, California, USA

In the San Luis Obispo Bay area of central California, interpretations of marine terrace ages have been hampered by inconsistent results from geochronological indicators (U-series ages of corals and correlations using amino acid racemization of mollusks) and seemingly contradictory paleozoogeographic aspects of fossil faunal assemblages. New U-series ages of corals, amino acid data from mollusks, and detailed analyses of fossil mollusk assemblages are presented that reconcile many of the apparently discordant results from previous studies. The two lowest-elevation terraces are Q1 (lower) and Q2 (upper); both are thought to date from high-sea stands of marine isotope stage (MIS) 5, the last interglacial complex. A combination of U-series dating and amino acid racemization results indicates that the Q1 terrace probably dates to the ∼80 ka high-sea stand of MIS 5a. U-series analyses of corals from the Q2 terrace show open-system histories, but consideration of two alternative open-system histories indicates that this terrace likely hosts corals dating to the high-sea stands of MIS 5c (∼105–95 ka) and MIS 5e (∼130–115 ka). Amino acid ratios in the fossil bivalve Leukoma staminea (Conrad, 1837) support the age differences between the two terraces and the open-system models suggested by the U-series data. Alkenone studies along much of the coast of California have shown that sea surface temperatures (SSTs) of the eastern Pacific Ocean were warmer than present during MIS 5e. During MIS 5c, on the other hand, SSTs were either similar to the present or cooler, but in either case, much cooler than during MIS 5e. The paleozoogeographic aspects of the molluscan faunas from the Q2 terrace support an interpretation that these deposits contain a mixture of fossils from both the MIS 5c and 5e high-sea stands. Fossils from the Q2 terrace include southern or southward-ranging species (likely dating to MIS 5e) and northern or northward-ranging species (likely dating to MIS 5c). A mixture of MIS 5e and MIS 5c fossils on the Q2 terrace is consistent with similar data reported for other localities in California. This phenomenon is explained by glacial isostatic adjustment (GIA) processes, which brought about a higher-than-present sea level during MIS 5c. GIA processes, combined with a low uplift rate, allowed mixing of MIS 5e fossils during the MIS 5c high-sea stand through capture of an MIS 5e terrace that had experienced minimal uplift in ∼20,000 years. Terrace reoccupation and fossil mixing such as that in the San Luis Obispo Bay area can be expected along any part of the Pacific Coast of North America that was affected by GIA processes and where uplift rates are low.

California

Juvenile coho salmon growth and health in streams across an urbanization gradient

Expanding human population and urbanization alters freshwater systems through structural changes to habitat, temperature effects from increased runoff and reduced canopy cover, altered flows, and increased toxicants. Current stream assessments stop short of measuring health or condition of species utilizing these freshwater habitats and fail to link specific stressors mechanistically to the health of organisms in the stream. Juvenile fish growth integrates both external and internal conditions providing a useful indicator of habitat quality and ecosystem health. Thus, there is a need to account for ecological and environmental influences on fish growth accurately. Bioenergetics models can simulate changes in growth and consumption in response to environmental conditions and food availability to account for interactions between an organism's environmental experience and utilization of available resources. The bioenergetics approach accounts for how thermal regime, food supply, and food quality affect fish growth. This study used a bioenergetics modeling approach to evaluate the environmental factors influencing juvenile coho salmon growth among ten Pacific Northwest streams spanning an urban gradient. Urban streams tended to be warmer, have earlier emergence dates and stronger early season growth. However, fish in urban streams experienced increased stress through lower growth efficiencies, especially later in the summer as temperatures warmed, with as much as a 16.6% reduction when compared to fish from other streams. Bioenergetics modeling successfully characterized salmonid growth in small perennial streams as part of a more extensive monitoring program and provides a powerful assessment tool for characterizing mixed life-stage specific responses in urban streams.

Science of the Total Environment