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At least 433 records · Page 24Linked to original sources
USGS2007

Concentrations of metals in water, sediment, biofilm, benthic macroinvertebrates, and fish in the Boulder River watershed, Montana, and the role of colloids in metal uptake

To characterize the partitioning of metals in a stream ecosystem, concentrations of trace metals including As, Cd, Cu, Pb, and Zn were measured in water, colloids, sediment, biofilm (also referred to as aufwuchs ), macroinvertebrates, and fish collected from the Boulder River watershed, Montana. Median concentrations of Cd, Cu, and Zn in water throughout the watershed exceeded the U.S. EPA acute and chronic criteria for protection of aquatic life. Concentrations of As, Cd, Cu, Pb, and Zn in sediment were sufficient in the tributaries to cause invertebrate toxicity. The concentrations of As, Cu, Cd, Pb, and Zn in invertebrates from lower Cataract Creek (63, 339, 59, 34, and 2,410 μg/g dry wt, respectively) were greater than the concentrations in invertebrates from the Clark Fork River watershed, Montana (19, 174, 2.3, 15, and 648 μg/g, respectively), that were associated with reduced survival, growth, and health of cutthroat trout fed diets composed of those invertebrates. Colloids and biofilm seem to play a critical role in the pathway of metals into the food chain and concentrations of As, Cu, Pb, and Zn in these two components are significantly correlated. We suggest that transfer of metals associated with Fe colloids to biological components of biofilm is an important pathway where metals associated with abiotic components are first available to biotic components. The significant correlations suggest that Cd, Cu, and Zn may move independently to biota (biofilm, invertebrates, or fish tissues) from water and sediment. The possibility exists that Cd, Cu, and Zn concentrations increase in fish tissues as a result of direct contact with water and sediment and indirect exposure through the food chain. However, uptake through the food chain to fish may be more important for As. Although As concentrations in colloids and biofilm were significantly correlated with As water concentrations, As concentrations in fish tissues were not correlated with water. The pathway for Pb into biological components seems to begin with sediment because concentrations of Pb in water were not significantly correlated with any other component and because concentrations of Pb in the water were often below detection limits.

Montana↗
USGS2018

Contaminants of emerging concern presence and adverse effects in fish: A case study in the Laurentian Great Lakes

The Laurentian Great Lakes are a valuable natural resource that is affected by contaminants of emerging concern (CECs), including sex steroid hormones, personal care products, pharmaceuticals, industrial chemicals, and new generation pesticides. However, little is known about the fate and biological effects of CECs in tributaries to the Great Lakes. In the current study, 16 sites on three rivers in the Great Lakes basin (Fox, Cuyahoga, and Raquette Rivers) were assessed for CEC presence using polar organic chemical integrative samplers (POCIS) and grab water samplers. Biological activity was assessed through a combination of in vitro bioassays (focused on estrogenic activity) and in vivo assays with larval fathead minnows. In addition, resident sunfish, largemouth bass, and white suckers were assessed for changes in biological endpoints associated with CEC exposure. CECs were present in all water samples and POCIS extracts. A total of 111 and 97 chemicals were detected in at least one water sample and POCIS extract, respectively. Known estrogenic chemicals were detected in water samples at all 16 sites and in POCIS extracts at 13 sites. Most sites elicited estrogenic activity in bioassays. Ranking sites and rivers based on water chemistry, POCIS chemistry, or total in vitro estrogenicity produced comparable patterns with the Cuyahoga River ranking as most and the Raquette River as least affected by CECs. Changes in biological responses grouped according to physiological processes, and differed between species but not sex. The Fox and Cuyahoga Rivers often had significantly different patterns in biological response Our study supports the need for multiple lines of evidence and provides a framework to assess CEC presence and effects in fish in the Laurentian Great Lakes basin.

Environmental Pollution↗
USGS2018

Development of a species status assessment process for decisions under the U.S. Endangered Species Act

Decisions under the U.S. Endangered Species Act (ESA) require scientific input on the risk that the species will become extinct. A series of critiques on the role of science in ESA decisions have called for improved consistency and transparency in species risk assessments and clear distinctions between science input and policy application. To address the critiques and document the emerging practice of the U.S. Fish and Wildlife Service (USFWS), we outline an assessment process based on principles and practices of risk and decision analyses that results in a scientific report on species status. The species status assessment (SSA) process has three successive stages: 1) document the life history and ecological relationships of the species in question to provide the foundation for the assessment, 2) describe and hypothesize causes for the current condition of the species, and 3) forecast the species' future condition. The future condition refers to the ability of a species to sustain populations in the wild under plausible future scenarios. The scenarios help explore the species' response to future environmental stressors and to assess the potential for conservation to intervene to improve its status. The SSA process incorporates modeling and scenario planning for prediction of extinction risk and applies the conservation biology principles of representation, resiliency, and redundancy to evaluate the current and future condition. The SSA results in a scientific report distinct from policy application, which contributes to streamlined, transparent, and consistent decision-making and allows for greater technical participation by experts outside of the USFWS, for example, by state natural resource agencies. We present two case studies based on assessments of the eastern massasauga rattlesnake Sistrurus catenatus and the Sonoran Desert tortoise Gopherus morafkai to illustrate the process. The SSA builds upon the past threat-focused assessment by including systematic and explicit analyses of a species' future response to stressors and conservation, and as a result, we believe it provides an improved scientific analysis for ESA decisions.

Journal of Fish and Wildlife Management↗
USGS1999

Sand lance: A review of biology and predator relations and annotated bibliography

Six species of sand lance ( Ammodytes ) in temperate and boreal regions are currently recognized. Sand lance can occupy a wide range of environmental conditions, but all appear to be dormant predominantly in winter, and one species is in summer also. They lack a swim bladder and spend much of their time buried in specific substrates. Copepods are the primary food. Spawning usually occurs in fall or winter (although some species also spawn in spring), eggs are demersal, and larvae may hatch at times of low food abundance. Sand lance usually occur in schools and are regarded as a relatively high-quality forage fish. Sand lance constitute a major prey for at least some populations of over 100 species of consumer, including 40 species of birds, 12 species of marine mammals, 45 species of fishes, and some invertebrates. Variation in the availability of sand lance (and other forage fishes) can have major effects on the breeding success and survival of their predators. Commercial fishing and other pressures on sand lance populations potentially have ramifying effects on many species of wildlife. The bibliography contains over 1,700 references on the family Ammodytidae, with an emphasis on the genus Ammodytes . Keywords are provided for each reference and have been further organized into taxonomic, geographic, subject, and predator indexes.

Research Paper↗
USGS2026

An Antarctic ecosystem value index to quantify ecological value across trophic levels and over time

The Southern Ocean around Antarctica is one of the fastest changing regions on the planet and an emerging resource frontier for fisheries. Here, we present the Antarctic Ecosystem Value Index created by merging ecosystem information across food web trophic levels, from phytoplankton to fish and penguins, to quantify the ecological value of marine areas around the Antarctic continent. We find that coastal polynyas - areas of reduced sea-ice - have Index values 31–72% higher than surrounding areas, suggesting that these areas are biologically valuable hot spots for a number of ice-dependent Antarctic Species. Using output from an Earth system model to generate future projections of the Index, we find that high-value locations, often within polynyas, are likely to continue to be valuable throughout the 21st century despite environmental changes. The Antarctic Ecosystem Value Index indicates that penguins lose importance as their habitat becomes increasingly unsuitable, so protecting high-value habitat areas may be critical for these species. This study also shows that while many high-value Index areas are within existing or proposed Marine Protected Areas, there are several opportunities for adopting additional protection, particularly in East Antarctica and the Amundsen Sea.

Nature Communications↗
USGS2001

An evaluation of selenium concentrations in water, sediment, invertebrates, and fish from the Republican River Basin: 1997-1999

The Republican River Basin of Colorado,Nebraska, and Kansas lies in a valley which contains PierreShale as part of its geological substrata. Selenium is anindigenous constituent in the shale and is readily leached intosurrounding groundwater. The Basin is heavily irrigated throughthe pumping of groundwater, some of which is selenium-contaminated, onto fields in agricultural production. Water,sediment, benthic invertebrates, and/or fish were collected from46 sites in the Basin and were analyzed for selenium to determinethe potential for food-chain bioaccumulation, dietary toxicity,and reproductive effects of selenium in biota. Resultingselenium concentrations were compared to published guidelines orbiological effects thresholds. Water from 38% of the sites (n = 18) contained selenium concentrations exceeding 5 μg L -1 , which is reported to be a high hazard for selenium accumulation into the planktonic food chain. An additional 12 sites (26% of the sites) contained selenium in water between 3–5 μg L -1 , constituting a moderate hazard. Selenium concentrations in sedimentindicated little to no hazard for selenium accumulation fromsediments into the benthic food chain. Ninety-five percent ofbenthic invertebrates collected exhibited selenium concentrationsexceeding 3 μg g -1 , a level reported as potentially lethal to fish and birds that consume them. Seventy-five percent of fish collected in 1997, 90% in 1998, and 64% in 1999 exceeded 4 μg g -1 selenium, indicating a high potential for toxicity andreproductive effects. However, examination of weight profilesof various species of collected individual fish suggestedsuccessful recruitment in spite of selenium concentrations thatexceeded published biological effects thresholds for health andreproductive success. This finding suggested that universalapplication of published guidelines for selenium may beinappropriate or at least may need refinement for systems similarto the Republican River Basin. Additional research is needed todetermine the true impact of selenium on fish and wildliferesources in the Basin.

Environmental Monitoring and Assessment↗
USGS1996

Environmental hazards of aluminum to plants, invertebrates, fish, and wildlife

Aluminum (Al) is the third most common mineral and the most common metal in Earth’s crust, accounting for approximately 8.1% of the crust by weight. Thus, it cannot be considered a contaminant in the usual sense of the word. However, despite its near omnipresence throughout the world, Al has been of major concern as a primary limiting factor to cultivated plants for several decades. In much of the world, Al severely restricts the growth and presence of plant species. Since the late 1970s, concern about Al toxicity has spread to natural habitats, most notably forests and aquatic communities. The primary impetus for this concern has been the increased awareness of the effects of anthropogenic acidification through mine drainage, acid deposition, and other sources. The toxicity of Al is intimately associated with pH in that the metal is soluble and biologically available in acidic (pH <5.5) soils and waters but relatively innocuous in circumneutral (pH 5.5-7.5) conditions. Forest die-offs and reduced survivorship or impaired reproduction of aquatic invertebrates, fish, and amphibians have been directly connected to Al toxicity. Indirect effects on birds and mammals also have been identified. The purpose of this review is to summarize the toxic effects of Al to populations and to evaluate the potential hazards to the communities in which these populations are found.

Book chapter↗
USGSDate not supplied

The ecology of Humboldt Bay, California, an estuarine profile

Synthesizes data on the ecological relationships and functions of the estuary, including information on physical aspects of the bay environment; describes the biotic communities and their relationships; provides management considerations in terms including environmental concerns; and identifies research and management information gaps. Portions of the bay are managed as a national wildlife refuge. Management issues for this ecosystem include loss of habitat and degradation of the environment by additional industrial development and nonpoint source pollution. -from Authors

California↗
USGS2000

Hazard assessment of selenium and other trace elements in wild larval razorback sucker from the Green River, Utah

Contaminant investigations of the Green River in northeastern Utah have documented selenium contamination at sites receiving irrigation drainage. The Green River provides critical habitat for four endangered fishes including the largest extant riverine population of endangered razorback sucker. Although 2175 larval razorback suckers were collected from the river between 1992 and 1996, very few juveniles have been captured within recent decades. Selenium concentrations were measured in larval razorback suckers collected from five sites in the Green River (Cliff Creek, Stewart Lake Drain, Sportsman's Drain, Greasewood Corral, and Old Charlie Wash) to assess the potential for adverse effects on recruitment of larvae to the juvenile stage and the adult population. Larvae from all sites contained mean selenium concentrations ranging from 4.3 to 5.8 ??g/g. These values were at or above the proposed toxic threshold of 4 ??g/g for adverse biological effects in fish, which was derived from several laboratory and field studies with a wide range of fish species. At two sites, Cliff Creek and Stewart Lake Drain, selenium concentrations in larvae increased over time as fish grew, whereas selenium concentrations decreased as fish grew at Sportsman's Drain. Evaluation of a 279-larvae composite analyzed for 61 elements demonstrated that selenium and, to a lesser extent, vanadium were elevated to concentrations reported to be toxic to a wide range of fish species. Elevated selenium concentrations in larval razorback suckers from the five sites suggest that selenium contamination may be widespread in the Green River, and that survival and recruitment of larvae to the juvenile stage may be limited due to adverse biological effects. Selenium contamination may be adversely affecting the reproductive success and recruitment of endangered razorback sucker.

Ecotoxicology and Environmental Safety↗
USGS2011

Endocrine active chemicals, pharmaceuticals, and other chemicals of concern in surface water, wastewater-treatment plant effluent, and bed sediment, and biological characteristics in selected streams, Minnesota: Design, methods, and data, 2009

This report presents the study design, environmental data, and quality-assurance data for an integrated chemical and biological study of selected streams or lakes that receive wastewater-treatment plant effluent in Minnesota. This study was a cooperative effort of the U.S. Geological Survey, the Minnesota Pollution Control Agency, St. Cloud State University, the University of St. Thomas, and the University of Colorado. The objective of the study was to identify distribution patterns of endocrine active chemicals, pharmaceuticals, and other organic and inorganic chemicals of concern indicative of wastewater effluent, and to identify biological characteristics of estrogenicity and fish responses in the same streams. The U.S. Geological Survey collected and analyzed water, bed-sediment, and quality-assurance samples, and measured or recorded streamflow once at each sampling location from September through November 2009. Sampling locations included surface water and wastewater-treatment plant effluent. Twenty-five wastewater-treatment plants were selected to include continuous flow and periodic release facilities with differing processing steps (activated sludge or trickling filters) and plant design flows ranging from 0.002 to 10.9 cubic meters per second (0.04 to 251 million gallons per day) throughout Minnesota in varying land-use settings. Water samples were collected from the treated effluent of the 25 wastewater-treatment plants and at one point upstream from and one point downstream from wastewater-treatment plant effluent discharges. Bed-sediment samples also were collected at each of the stream or lake locations. Water samples were analyzed for major ions, nutrients, trace elements, pharmaceuticals, phytoestrogens and pharmaceuticals, alkylphenols and other neutral organic chemicals, carboxylic acids, and steroidal hormones. A subset (25 samples) of the bed-sediment samples were analyzed for carbon, wastewater-indicator chemicals, and steroidal hormones; the remaining samples were archived. Biological characteristics were determined by using an in-vitro bioassay to determine total estrogenicity in water samples and a caged fish study to determine characteristics of fish from experiments that exposed fish to wastewater effluent in 2009. St. Cloud State University deployed and processed caged fathead minnows at 13 stream sites during September 2009 for the caged fish study. Measured fish data included length, weight, body condition factor, and vitellogenin concentrations.

Minnesota↗
USGS1995

Water-quality assessment of the upper Snake River Basin, Idaho and western Wyoming — Summary of aquatic biological data for surface water through 1992

The 35,800-square-mile upper Snake River Basin in eastern Idaho and western Wyoming was one of 20 areas selected for water-quality study under the National Water-Quality Assessment Program. As part of the initial phase of the study, data were compiled to describe the current (1992) and historical aquatic biological conditions of surface water in the basin. This description of natural and human environmental factors that affect aquatic life provides the framework for evaluating the status and trends of aquatic biological conditions in streams of the basins. Water resource development and stream alterations, irrigated agriculture, grazing, aquaculture, and species introductions have affected stream biota in the upper Snake River Basin. Cumulative effects of these activities have greatly altered cold-water habitat and aquatic life in the middle Snake River reach (Milner Dam to King Hill). Most of the aquatic Species of Special Concern in the basin , consisting of eight native mollusks and three native fish species, are in this reach of the Snake River. Selected long-term studies, including comprehensive monitoring on Rock Creek, have shown reduced pollutant loadings as a result of implementing practice on cropland; however, aquatic life remains affected by agricultural land use. Community level biological data are lacking for most of the streams in the basin, especially for large river. Aquatic life used to assess water quality of the basin includes primarily macroinvertebrate and fish communities. At least 26 different macroinvertebrate and fish community metrics have been utilized to assess water quality of the basin. Eight species of macroinvertebrates and fish are recognized as Species of Special Concern. The native fish faunas of the basin are composed primarily of cold-water species representing 5 families and 26 species. An additional 13 fish species have been introduced to the basin. Concentrations of synthetic organic compounds and trace-element contaminants in whole fish collected in the basin during 1970-90 generally did not exceed National Academy of Sciences and National Academy of Engineering concentration guidelines or the 1980-81 geometric mean concentrations from samples collected as part of the U.S. Fish and Wildlife Service National Contaminant Biomonitoring Program. Currently, there are no State fish consumption advisories on any streams in the basin, The organochlorine compounds DDT and PCB's were the most frequently detected fish tissue contaminant. Selected long-term data on DDT, its metabolites, and PCB's indicate decreasing concentrations of these compounds. Arsenic, mercury, and selenium were slightly elevated compared with nationwide baseline concentrations and may indicate bioaccumularion in the food chain. Concentrations of most other trace elements in fish tissue were below levels of concerns for the protection of humans and wildlife.

Idaho, Wyoming↗
USGS2019

Trophic plasticity and the invasion of a renowned piscivore: A diet synthesis of northern pike (Esox lucius) from the native and introduced ranges in Alaska, U.S.A.

The invasion of non-native fishes is a leading cause of extinction and imperilment of native freshwater fishes. Evidence suggests that introduced species with generalist diets have the potential for greatest impacts through competition and predation even though populations are often comprised of specialist individuals. The northern pike (Esox lucius), a predatory fish, has been widely introduced outside its native range for recreational fishing purposes, especially in western North America, and it has been implicated in declines and extirpations of native fishes. We synthesized over 2,900 individual northern pike diet records across 31 waterbodies from the native and introduced ranges in Alaska to quantify the extent of diet specialization and generalization relative to freshwater prey communities. To control for effects of ontogenetic diet shifts, we separately analyzed major size classes of northern pike and inferred and visualized trophic plasticity from Prey-Specific Abundance indices and ordination. Diet generalization was common in northern pike among waterbodies and usually consisted of individuals consuming macroinvertebrates. However, when available, individual northern pike diets showed specialization on fishes, amphibians, small mammals, and dragonflies. The reliance on macroinvertebrate prey by northern pike from small, isolated lakes in the native and invasive ranges suggests that dietary plasticity facilitates persistence of these predators in the absence of preferred fish prey. Broadly, this synthesis supports the hypothesis that trophic plasticity and diet generalization widely occur among invasive and native populations of northern pike which is likely to enhance the probability of introduction success, exacerbate their environmental impacts, and complicate management of this potentially invasive freshwater predator.

Alaska↗
USGS2020

Influence of sediment and stream transport on detecting a source of environmental DNA

Environmental DNA (eDNA) can be used for early detection, population estimations, and assessment of potential spread of invasive species, but questions remain about factors that influence eDNA detection results. Efforts are being made to understand how physical, chemical, and biological factors—settling, resuspension, dispersion, eDNA stability/decay—influence eDNA estimations and potentially population abundance. In a series of field and controlled mesocosm experiments, we examined the detection and accumulation of eDNA in sediment and water and the transport of eDNA in a small stream in the Lake Michigan watershed, using the invasive round goby fish ( Neogobius melanostomus ) as a DNA source. Experiment 1: caged fish (average n = 44) were placed in a stream devoid of round goby; water was collected over 24 hours along 120-m of stream, including a simultaneous sampling event at 7 distances from DNA source; stream monitoring continued for 24 hours after fish were removed. Experiment 2: round goby were placed in laboratory tanks; water and sediment were collected over 14 days and for another 150 days post-fish removal to calculate eDNA shedding and decay rates for water and sediment. For samples from both experiments, DNA was extracted, and qPCR targeted a cytochrome oxidase I gene (COI) fragment specific to round goby. Results indicated that eDNA accumulated and decayed more slowly in sediment than water. In the stream, DNA shedding was markedly lower than calculated in the laboratory, but models indicate eDNA could potentially travel long distances (up to 50 km) under certain circumstances. Collectively, these findings show that the interactive effects of ambient conditions (e.g., eDNA stability and decay, hydrology, settling-resuspension) are important to consider when developing comprehensive models. Results of this study can help resource managers target representative sites downstream of potential invasion sites, thereby maximizing resource use.

PLoS ONE↗
USGS2003

Seabird tissue archival and monitoring project: Egg collections and analytical results 1999-2002

In 1998, the U.S. Geological Survey Biological Resources Division (USGS-BRD), the U.S. Fish and Wildlife Service (USFWS) Alaska Maritime National Wildlife Refuge (AMNWR), and the National Institute of Standards and Technology (NIST) began the Seabird Tissue Archival and Monitoring Project (STAMP) to collect and cryogenically bank tissues from seabirds in Alaska for future retrospective analysis of anthropogenic contaminants. The approach of STAMP was similar to that of the Alaska Marine Mammal Tissue Archival Project (AMMTAP). AMMTAP was started in 1987 by NIST and the National Oceanic and Atmospheric Administration (NOAA) as part of the Outer Continental Shelf Environmental Assessment Program sponsored by the Minerals Management Service. Presently sponsored by the USGS-BRD, AMMTAP continues its work as part of a larger national program, the Marine Mammal Health and Stranding Response Program. AMMTAP developed carefully designed sampling and specimen banking protocols. Since 1987, AMMTAP has collected tissues from marine mammals taken in Alaska Native subsistence hunts and has cryogenically banked these tissues at the NIST National Biomonitoring Specimen Bank (NBSB). Through its own analytical work and working in partnership with other researchers both within and outside Alaska, AMMTAP has helped to develop a substantial database on contaminants in Alaska marine mammals. In contrast, data and information is limited on contaminants in Alaska seabirds, which are similar to marine mammals in that they feed near the top of the food chain and have the potential for accumulating anthropogenic contaminants. During its early planning stages, STAMP managers identified the seabird egg as the first tissue of choice for study by the project. There is a relatively long history of using bird eggs for environmental monitoring and for investigating the health status of bird populations. Since 1998, protocols for collecting and processing eggs, and cryogenically banking egg samples have been developed by STAMP (see York et al. 2001). Eggs are being collected on an annual basis for several species at nesting colonies throughout Alaska. Aliquots of these egg samples are being analyzed on a regular basis for persistent organic pollutants and mercury. Results of this work have been published in scientific journals (Christopher et al. 2002) and in conference proceedings (Kucklick et al. 2002; Vander Pol et al. 2002a, 2002b). The intent of this report is to provide an up-to-date description of STAMP. The report contains the most recent egg collection inventory, analytical data, preliminary interpretations based on these data, and a discussion of possible future directions of the project.

Report↗
USGS2005

Evaluating water management strategies with the Systems Impact Assessment Model: SIAM version 4

Water from many of California's coastal rivers has been used for a wide variety of development ventures, including major agricultural diversions, hydropower generation, and contaminant assimilation from industry, agriculture and logging. Anthropogenic impacts often degrade water quality and decrease the quantity and quality of aquatic habitat. Reallocating streamflow away from uses that degrade water quality to uses that foster higher water quality is a critical step in restoring riverine habitat and the anadromous fish that rely on that habitat for a portion of their life cycle. Reallocation always brings with it the need to examine the economic efficiency of the proposed changes. If the dollar benefits of improving water quality are greater than the costs, the criterion of improving economic efficiency is satisfied, a fact that can be highly persuasive to decision makers contemplating reallocation. Previous related studies have examined nonmarket benefits of the Trinity River in northern California (Douglas and Taylor, 1998; Douglas and Taylor, 1999abc) but nothing of this kind had been done on the Klamath River, another system with numerous uses for and competition over water in times of drought. An economic survey is nearing completion for the mid- to lower Klamath River, including the Scott, Shasta, and Salmon Rivers, but excluding the Trinity River. This survey provides valuable insights about the magnitude of the benefits and nature of the costs of reallocating water from market uses to instream flows that improve water quality and assist in the recovery of Klamath River fish stocks. Preliminary survey results (Douglas and Johnson, 2002; Douglas and Sleeper, In Prep.) indicate that about 234,000 California, Oregon, and Nevada households made recreation trips to the Klamath River Basin 1997-1998 and that these users spent about $372 million on trip related expenditures. Clearly the prosperity of the region is closely linked to the demand for mid- and lower Klamath River Basin recreation trips. Further, respondents indicated that they would make roughly 36% more recreational trips per annum to the Klamath if the water quality and the fishery were restored to an unspoiled condition. Using two distinct types of survey data, these additional trips would yield benefits with a present value of approximately $9.6 billion (at a discount rate of 7.5%). Calculating costs to restore the fishery and raise water quality involved five major hypothetical restoration activities: (1) purchasing Klamath project farmland and environmentally sensitive forest lands, (2) allocating more water down the Trinity River to enhance the quantity and quality of Klamath flows below the confluence, (3) removing four mainstem dams along the Klamath River and losing their associated hydropower production, (4) eliminating all harvest of Klamath-Trinity fish stocks for a 12-year period including the acquisition of fishing rights from both tribal and commercial marine fishermen, and (5) operating all Klamath-Trinity fish hatcheries to restore self-reproducing stocks. In total, restoration costs were estimated to be about $1.7 to $2.3 billion. If the assumptions used in this study are valid, it is clear that the benefits ($9.6B) outweigh the costs of restoring water quality and the fishery. The apparent disparity between restoration benefits and costs for the Klamath River may suggest to some that water resources on the Klamath be reallocated to environmentally friendly nonmarket uses. The economic analysis rests in part on the information made available to the survey designers by the biological, hydrologic, and water quality data incorporated in The System Impact Assessment Model (SIAM). It is our hope that SIAM can be used to improve the river's water quality and fishery, and strengthen the important regional economy.

Open-File Report↗
USGS2003

Comparing marine and terrestrial ecosystems: Implications for the design of coastal marine reserves

Concepts and theory for the design and application of terrestrial reserves is based on our understanding of environmental, ecological, and evolutionary processes responsible for biological diversity and sustainability of terrestrial ecosystems and how humans have influenced these processes. How well this terrestrial -based theory can be applied toward the design and application of reserves in the coastal marine environment depends, in part, on the degree of similarity between these systems. Several marked differences in ecological and evolutionary processes exist between marine and terrestrial ecosystems as ramifications of fundamental differences in their physical environments (i.e., the relative prevalence of air and water) and contemporary patterns of human impacts. Most notably, the great extent and rate of dispersal of nutrients, materials, holoplanktonic organisms, and reproductive propagules of benthic organisms expand scales of connectivity among near-shore communities and ecosystems . Consequently, the "openness" of marine populations, communities, and ecosystems probably has marked influences on their spatial, genetic, and trophic structures and dynamics in ways experienced by only some terrestrial species. Such differences appear to be particularly significant for the kinds of organisms most exploited and targeted for protection in coastal marine ecosystems (fishes and macroinvertebrates). These and other differences imply some unique design criteria and application of reserves in the marine environment. In explaining the implications of these differences for marine reserve design and application, we identify many of the environmental and ecological processes and design criteria necessary for consideration in the development of the analytical approaches developed elsewhere in this Special Issue.

Ecological Applications↗
USGS2006

Species richness and patterns of invasion in plants, birds, and fishes in the United States

We quantified broad-scale patterns of species richness and species density (mean # species/km 2 ) for native and non-indigenous plants, birds, and fishes in the continental USA and Hawaii. We hypothesized that the species density of native and non-indigenous taxa would generally decrease in northern latitudes and higher elevations following declines in potential evapotranspiration, mean temperature, and precipitation. County data on plants ( n = 3004 counties) and birds ( n =3074 counties), and drainage (6 HUC) data on fishes ( n = 328 drainages) showed that the densities of native and non-indigenous species were strongly positively correlated for plant species ( r = 0.86, P < 0.0001), bird species ( r = 0.93, P <0.0001), and fish species ( r = 0.41, P <0.0001). Multiple regression models showed that the densities of native plant and bird species could be strongly predicted (adj. R 2 = 0.66 in both models) at county levels, but fish species densities were less predictable at drainage levels (adj. R 2 = 0.31, P <0.0001). Similarly, non-indigenous plant and bird species densities were strongly predictable (adj. R 2 = 0.84 and 0.91 respectively), but non-indigenous fish species density was less predictable (adj. R 2 = 0.38). County level hotspots of native and non-indigenous plants, birds, and fishes were located in low elevation areas close to the coast with high precipitation and productivity (vegetation carbon). We show that (1) native species richness can be moderately well predicted with abiotic factors; (2) human populations have tended to settle in areas rich in native species; and (3) the richness and density of non-indigenous plant, bird, and fish species can be accurately predicted from biotic and abiotic factors largely because they are positively correlated to native species densities. We conclude that while humans facilitate the initial establishment, invasions of non-indigenous species, the spread and subsequent distributions of non-indigenous species may be controlled largely by environmental factors.

Biological Invasions↗
USGS2005

Combined use of rapid bioassessment protocols and sediment quality triad to assess stream quality

Physical, chemical and biological conditions at five stations on a small southeastern stream were evaluated using the Rapid Bioassessment Protocols (RBP) and the Sediment Quality Triad (SQT) to assess potential biological impacts of a municipal wastewater treatment facility (WWTF) on downstream resources. Physical habitat, benthic macroinvertebrates and fish assemblages were impaired at Stations 1 and 2 (upstream of the WWTF), suggesting that the degraded physical habitat was adversely impacting the fish and benthic populations. The SQT also demonstrated that Stations 1 and 2 were degraded, but the factors responsible for the impaired conditions were attributed to the elevated concentrations of polycylclic aromatic hydrocarbons (PAHs) and metals (Mn, Pb) in the sediments. The source of contaminants to the upper reaches of the stream appears to be storm-water runoff from the city center. Increased discharge and stabilized base flow contributed by the WWTF appeared to benefit the physically-altered stream system. Although the two assessment procedures demonstrated biological impairment at the upstream stations, the environmental factors identified as being responsible for the impairment were different: the RBP provided insight into contributions associated with the physical habitat and the SQT contributed information on contaminants and sediment quality. Both procedures are important in the identification of physical and chemical factors responsible for environmental impairment and together they provide information critical to the development of appropriate management options for mitigation.

Environmental Monitoring and Assessment↗